lowQualScore : 33 1 2222222
lowQualScore : 88 5555 1 77 33 7777777 2 2 5 88
lowQualScore : .. .... . .. .. ....... . . . ..
lowQualScore : 00 0000 7 99 11 1111111 1 1 6 88
consensus : ATGAACAAAATAT-TT----TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G------AAA-AAC-ATTGACACAACTATAC-ATTTCAACAT
Reference ( gi|7 ) : ATGAACAAAATAAATT----TTTTTTTGGATTTGAAGAAAATGTATTACAGT--G------CAA-AAC-ATTGACGCAACTATAT-ATTTCAACAT
gi|5 : ATGAACAAAATATATT----TTTTTTTGTATTCGAAGTAAATATATT---GT--GAAAAAACAA-AAC-ATTGACACAACTATAC-ATTTCAACAT
gi|1 : tATGAACAAAATATATT----TTTTTTTGTATTCGAAGTAAATATATT---GT--GAAAAAACAA-AAC-ATTGACACAACTATAC-ATTTCAACATt
gi|6 : ATGAACAAAATATTAT----TTTTTTTGGATTTAAAGAAAATATATTGTAGT--G------AAA-ACC-ATTGACACAACTATAC-ATGTCAACtctt
gi|4 : ATGAACTAAATATTTA----TTTTTTTGCATTTGAAGAAAATGTATTGCAGTAAA------AAA-AAC-ATTTACGCAGCTATAT-ATTTCAACActtctt
gi|2 : ATGAACAAAATA--TTGTTGTTTTTTTGTATTTGAAGACAATATATTGTAGT--GA-----AAA-AAC-ATTGACACAACTATATAATTTCAACgttt
gi|3 : ATGAACAAAATATTAT----TTTTTTTATATTTGAAAAAAATGTATAACA-T--T------TAA-AATAATGGACACAACTATAC-ATTTCAGCATtttct
gi|17 : ATGAACAAAATA---T----TTTTTTTGTATTTGAAGAAAATGTATTGCATT--G------AAA-AAC-tttta
gi|14 : TGAACAAAATA--TT----TTTTTTTTGATTTGAAGAAAA-GTATTACAGT--T------T-A-AAC-ACTGGCACAACTATAC-ATTttcaacattt
gi|10 : AACAAAATG---T----TTTTATTGTATTTGAAGAAAATGTATTGAAGT--G-------AA-AAT-ATTTACATGACTATAT-ATTTCAACAT
gi|8 : ACAAACTAT-TT----TTTTTTTGTATTTGAAGAAAATATATTACAGT--G------AAA-AAC-ACTGACACAGTTATAC-ATTTTACCATtttta
gi|13 : gtCAAAATA---T----TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--A------AAA-TAA-ATTGAAACAACTATAC-ATTTCAACATttt
gi|11 : CAAAATA--TT----TTTTTTTATATTTTAAGAAAAATTATTGTAGT--G------TAA-AAC-ATTGATCCAACTAACC-GTTTCAACATt
gi|12 : AAATATATT----GTTTTT-GTATTTGAAGAAAATGTATTGGAGT--G------GAA-AAT-ATTGACACAACT-TATCATTTCAACATttt
gi|9 : gATT----TTTTTTTGCATTTGAAGAAAATGTATTGCAGT--G------AAACAAC-ATTGACACAACTATGA-ATTTCAACAT
gi|16 : aaatttattT----TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--A------AAA-TAA-ATTGAAACAACTATAC-ATTTCAACATtt
gi|18 : T----TGTTTTTGAATTTGAAGAAAA-------------------------AC-ATGGACACAACTATAA-ATTTCAAt
gi|15 : ----TTTTTTTGTATTTGAAGAAAATGTATTAGAGT--G------GAA-AAC-ATTGACACAACTATAC-ATTTCAACATatgttttttta
gi|19 : TTGTATTTGAAGAAAATATATTGCAAT--G------AAA-AAC-ATTGACACAACTATAG-ATTTCttt
gi|20 : A-AAC-ATTGATACAACTATAC-ATTCCAACAT
Alignments
lowQualScore : 11111111
lowQualScore : 8888 4 11 22 55555555 2 2 2
lowQualScore : .... . .. .. ........ . . .
lowQualScore : 7777 4 22 99 88888888 0 1 1
consensus : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
Reference ( family-4802 ) : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|1 : ATGAACAAAATATAT--T-TTTTTTTGTATTCGAAGTAAATATATT---GT--G-AAAAAACAA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|10 : AACAAAATGT-T--T-TTATT--GTATTTGAAGAAAATGTATTGAAGT--G--------AA-AATATTTACATGACTATA-T-ATTTCAACATtctt
gi|11 : CAAAATAT-T--T-TTTTTT-ATATTTTAAGAAAAATTATTGTAGT--G-T------AA-AACATTGATCCAACTAAC-C-GTTTCAACATtttta
gi|12 : AAATAT-A--T-TGTTTTTGTATTTGAAGAAAATGTATTGGAGT--G-G------AA-AATATTGACACAACT-TATC-ATTTCAACATttt
gi|13 : gCAAAATAT-T--T-T--TTTTGTATTTGAAGAAAATGTATTGCAGT--A-A------AA-TAAATTGAAACAACTATA-C-ATTTCAACAT
gi|14 : TGAACAAAATAT-T--T-TTTTTTTG-ATTTGAAGAAAA-GTATTACAGT--T--------TA-AACACTGGCACAACTATA-C-ATTt
gi|15 : -TTTTTTTGTATTTGAAGAAAATGTATTAGAGT--G-G------AA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|16 : --T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--A-A------AA-TAAATTGAAACAACTATA-C-ATTTCAACATttt
gi|17 : ATGAACAAAATAT-T--T-T--TTTTGTATTTGAAGAAAATGTATTGCATT--G-A------AA-AACTTCAACAt
gi|18 : --T-TGTTTTTGAATTTGAAGAAAA--------------------------ACATGGACACAACTATA-A-ATTTCAAttt
gi|19 : TTGTATTTGAAGAAAATATATTGCAAT--G-A------AA-AACATTGACACAACTATA-G-ATTTCatgttttttta
gi|2 : ATGAACAAAATAT-TGTTGTTTTTTTGTATTTGAAGACAATATATTGTAGT--GAA------AA-AACATTGACACAACTATA-TAATTTCAAC
gi|20 : A-AACATTGATACAACTATA-C-ATTCCAACATtttct
gi|3 : atATGAACAAAATAT-TA-T-TTTTTTTATATTTGAAAAAAATGTATAACATT--T-A------AA-ATAATGGACACAACTATA-C-ATTTCAGCATtttttattc
gi|4 : ATGAACTAAATAT-T--TATTTTTTTGCATTTGAAGAAAATGTATTGCAGTAAA-A------AA-AACATTTACGCAGCTATA-T-ATTTCAACAtttta
gi|5 : ATGAACAAAATATAT--T-TTTTTTTGTATTCGAAGTAAATATATT---GT--G-AAAAAACAA-AACATTGACACAACTATA-C-ATTTCAACATgttt
gi|6 : tATGAACAAAATAT-TA-T-TTTTTTTGGATTTAAAGAAAATATATTGTAGT--G-A------AA-ACCATTGACACAACTATA-C-ATGTCAACt
gi|7 : ATGAACAAAATAAAT--T-TTTTTTTGGATTTGAAGAAAATGTATTACAGT--G-C------AA-AACATTGACGCAACTATA-T-ATTTCAACATcttctt
gi|8 : ACAAACTAT-T--T-TTTTTTTGTATTTGAAGAAAATATATTACAGT--G-A------AA-AACACTGACACAGTTATA-C-ATTTTACCAT
gi|9 : gt-T--T-TTTTTTTGCATTTGAAGAAAATGTATTGCAGT--G-A------AACAACATTGACACAACTATG-A-ATTTCAACATttt
Alignments
lowQualScore : 11111111
lowQualScore : 8888 4 11 22 55555555 2 2 2
lowQualScore : .... . .. .. ........ . . .
lowQualScore : 7777 4 22 99 88888888 0 1 1
consensus : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
Reference ( family-4802 ) : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|1 : ATGAACAAAATATAT--T-TTTTTTTGTATTCGAAGTAAATATATT---GT--G-AAAAAACAA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|10 : AACAAAATGT-T--T-TTATT--GTATTTGAAGAAAATGTATTGAAGT--G--------AA-AATATTTACATGACTATA-T-ATTTCAACATtctt
gi|11 : CAAAATAT-T--T-TTTTTT-ATATTTTAAGAAAAATTATTGTAGT--G-T------AA-AACATTGATCCAACTAAC-C-GTTTCAACATtttta
gi|12 : AAATAT-A--T-TGTTTTTGTATTTGAAGAAAATGTATTGGAGT--G-G------AA-AATATTGACACAACT-TATC-ATTTCAACATttt
gi|13 : gCAAAATAT-T--T-T--TTTTGTATTTGAAGAAAATGTATTGCAGT--A-A------AA-TAAATTGAAACAACTATA-C-ATTTCAACAT
gi|14 : TGAACAAAATAT-T--T-TTTTTTTG-ATTTGAAGAAAA-GTATTACAGT--T--------TA-AACACTGGCACAACTATA-C-ATTt
gi|15 : -TTTTTTTGTATTTGAAGAAAATGTATTAGAGT--G-G------AA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|16 : --T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--A-A------AA-TAAATTGAAACAACTATA-C-ATTTCAACATttt
gi|17 : ATGAACAAAATAT-T--T-T--TTTTGTATTTGAAGAAAATGTATTGCATT--G-A------AA-AACTTCAACAt
gi|18 : --T-TGTTTTTGAATTTGAAGAAAA--------------------------ACATGGACACAACTATA-A-ATTTCAAttt
gi|19 : TTGTATTTGAAGAAAATATATTGCAAT--G-A------AA-AACATTGACACAACTATA-G-ATTTCatgttttttta
gi|2 : ATGAACAAAATAT-TGTTGTTTTTTTGTATTTGAAGACAATATATTGTAGT--GAA------AA-AACATTGACACAACTATA-TAATTTCAAC
gi|20 : A-AACATTGATACAACTATA-C-ATTCCAACATtttct
gi|3 : atATGAACAAAATAT-TA-T-TTTTTTTATATTTGAAAAAAATGTATAACATT--T-A------AA-ATAATGGACACAACTATA-C-ATTTCAGCATtttttattc
gi|4 : ATGAACTAAATAT-T--TATTTTTTTGCATTTGAAGAAAATGTATTGCAGTAAA-A------AA-AACATTTACGCAGCTATA-T-ATTTCAACAtttta
gi|5 : ATGAACAAAATATAT--T-TTTTTTTGTATTCGAAGTAAATATATT---GT--G-AAAAAACAA-AACATTGACACAACTATA-C-ATTTCAACATgttt
gi|6 : tATGAACAAAATAT-TA-T-TTTTTTTGGATTTAAAGAAAATATATTGTAGT--G-A------AA-ACCATTGACACAACTATA-C-ATGTCAACt
gi|7 : ATGAACAAAATAAAT--T-TTTTTTTGGATTTGAAGAAAATGTATTACAGT--G-C------AA-AACATTGACGCAACTATA-T-ATTTCAACATcttctt
gi|8 : ACAAACTAT-T--T-TTTTTTTGTATTTGAAGAAAATATATTACAGT--G-A------AA-AACACTGACACAGTTATA-C-ATTTTACCAT
gi|9 : gt-T--T-TTTTTTTGCATTTGAAGAAAATGTATTGCAGT--G-A------AACAACATTGACACAACTATG-A-ATTTCAACATttt
blockSeqs : TGT G GA AA AAAAAAC C T A
blockSeqs : TA A GT . AA . . .
blockSeqs : AT . GG . T . . .
blockSeqs : TA . GC . G . . .
blockSeqs : AT . AC . A . . .
blockSeqs : T . AG . G . . .
blockSeqs : T . GC . A . . .
blockSeqs : A . GC . A . . .
blockSeqs : T . GC . A . . .
blockSeqs : T . GT . A . . .
blockSeqs : T . AC . A . . .
blockSeqs : T . GC . A . . .
blockSeqs : T . GT . C . . .
blockSeqs : T . AC . A . . .
blockSeqs : . AC . A . . .
blockSeqs : . GC . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : T*** GC A*******
originalCons : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
finalCons : ATGAACAAAATATT---T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--GA-------AA-AACATTGACACAACTATA-C-ATTTCAACAT
Alignments
lowQualScore : 11111111
lowQualScore : 8888 4 11 22 55555555 2 2 2
lowQualScore : .... . .. .. ........ . . .
lowQualScore : 7777 4 22 99 88888888 0 1 1
consensus : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
Reference ( family-4802 ) : ATGAACAAAATAT-T--T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--G-A------AA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|1 : ATGAACAAAATATAT--T-TTTTTTTGTATTCGAAGTAAATATATT---GT--G-AAAAAACAA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|10 : AACAAAATGT-T--T-TTATT--GTATTTGAAGAAAATGTATTGAAGT--G--------AA-AATATTTACATGACTATA-T-ATTTCAACATtctt
gi|11 : CAAAATAT-T--T-TTTTTT-ATATTTTAAGAAAAATTATTGTAGT--G-T------AA-AACATTGATCCAACTAAC-C-GTTTCAACATtttta
gi|12 : AAATAT-A--T-TGTTTTTGTATTTGAAGAAAATGTATTGGAGT--G-G------AA-AATATTGACACAACT-TATC-ATTTCAACATttt
gi|13 : gCAAAATAT-T--T-T--TTTTGTATTTGAAGAAAATGTATTGCAGT--A-A------AA-TAAATTGAAACAACTATA-C-ATTTCAACAT
gi|14 : TGAACAAAATAT-T--T-TTTTTTTG-ATTTGAAGAAAA-GTATTACAGT--T--------TA-AACACTGGCACAACTATA-C-ATTt
gi|15 : -TTTTTTTGTATTTGAAGAAAATGTATTAGAGT--G-G------AA-AACATTGACACAACTATA-C-ATTTCAACAT
gi|16 : --T-TTTTTTTGTATTTGAAGAAAATGTATTGCAGT--A-A------AA-TAAATTGAAACAACTATA-C-ATTTCAACATttt
gi|17 : ATGAACAAAATAT-T--T-T--TTTTGTATTTGAAGAAAATGTATTGCATT--G-A------AA-AACTTCAACAt
gi|18 : --T-TGTTTTTGAATTTGAAGAAAA--------------------------ACATGGACACAACTATA-A-ATTTCAAttt
gi|19 : TTGTATTTGAAGAAAATATATTGCAAT--G-A------AA-AACATTGACACAACTATA-G-ATTTCatgttttttta
gi|2 : ATGAACAAAATAT-TGTTGTTTTTTTGTATTTGAAGACAATATATTGTAGT--GAA------AA-AACATTGACACAACTATA-TAATTTCAAC
gi|20 : A-AACATTGATACAACTATA-C-ATTCCAACATtttct
gi|3 : atATGAACAAAATAT-TA-T-TTTTTTTATATTTGAAAAAAATGTATAACATT--T-A------AA-ATAATGGACACAACTATA-C-ATTTCAGCATtttttattc
gi|4 : ATGAACTAAATAT-T--TATTTTTTTGCATTTGAAGAAAATGTATTGCAGTAAA-A------AA-AACATTTACGCAGCTATA-T-ATTTCAACAtttta
gi|5 : ATGAACAAAATATAT--T-TTTTTTTGTATTCGAAGTAAATATATT---GT--G-AAAAAACAA-AACATTGACACAACTATA-C-ATTTCAACATgttt
gi|6 : tATGAACAAAATAT-TA-T-TTTTTTTGGATTTAAAGAAAATATATTGTAGT--G-A------AA-ACCATTGACACAACTATA-C-ATGTCAACt
gi|7 : ATGAACAAAATAAAT--T-TTTTTTTGGATTTGAAGAAAATGTATTACAGT--G-C------AA-AACATTGACGCAACTATA-T-ATTTCAACATcttctt
gi|8 : ACAAACTAT-T--T-TTTTTTTGTATTTGAAGAAAATATATTACAGT--G-A------AA-AACACTGACACAGTTATA-C-ATTTTACCAT
gi|9 : gt-T--T-TTTTTTTGCATTTGAAGAAAATGTATTGCAGT--G-A------AACAACATTGACACAACTATG-A-ATTTCAACATttt