lowQualScore : 1111111111111111 11111111111111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 88888 11 111 111111 11 1111 111 444444444444444444444444 111 77777777777777777777 222222 1 22 33333 11 1111 1 111111111 222 11111111 4444444444444444 7777777777777777777777777777777777777777777777777777777777777777777777777777777 111 222222 2222 11 1 1 1111111111111111 1 11 5555555555555555 1 222 00000000000000000000000000000000000000000000000000 1 222 1 1 1 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 1 1 1
lowQualScore : 6 22222 00 99 5 000 77 666666 22 2222 000 0 4 777777777777777777777777 333 88888888888888888888 333333 5 3 33 3 999 8 99999 44 6666 3 5 555555555 4 4 111 0 1 555 444 99999999 2222222222222222 1 33 2 9999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 5 0 333 111111 1 5 4444 77 5 0 5 4 4 44 5 3 9 3 6666666666666666 3 44 0 9999999999999999 3 6 66 5 4 666 22222222222222222222222222222222222222222222222222 7 555 7 6 6 6 5 7 11 6 6 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 6 6 5 5 5 7
lowQualScore : . ..... .. .. . ... .. ...... .. .... ... . . ........................ ... .................... ...... . . .. . ... . ..... .. .... . . ......... . . ... . . ... ... ........ ................ . .. . ............................................................................... . . . . ... ...... . . .... .. . . . . . .. . . . . ................ . .. . ................ . . .. . . ... .................................................. . ... . . . . . . .. . . . . ................................................................................................................................ . . . . . . .
lowQualScore : 0 00000 77 00 7 000 99 444444 33 1111 666 4 3 888888888888888888888888 333 66666666666666666666 000000 4 2 44 2 888 0 66666 66 2222 3 2 999999999 4 4 444 1 5 222 666 55555555 1111111111111111 7 88 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 0 3 777 444444 4 7 1111 99 0 1 0 7 8 33 0 7 7 3 7777777777777777 3 00 7 3333333333333333 0 0 55 0 0 000 00000000000000000000000000000000000000000000000000 0 000 0 0 0 0 0 0 00 0 0 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAACGNCA-T---TTTCAA--CAC------ATGTCAGGT----TA--TATATGGCATATC-----CAGT----T----T-G---GTGGAGGAAGA-CTTCA----GAA-----C------TGAGT------AGAACCACCGTCCTTCCGCAAGTAACT-GNC---AAAC-TTTCTCACATAAAGTTTTTG-GAGCGA-GCGGGACTCGAACCTACGA-CC-T-A-GCGGTGAGAG-GTAAGTGAT-C-TT-G------AGA---CA-NCG----CT-TAGACCACTCGGCCACGGAGGACCC----TTAAC---TA-A------TTG--AA-T----A-AATNTNAA--CTT-TAGGTAAGT-------AAGT---T--A-T-TT-ATTATAGTGACAT----GTGTAC-ATGTAACA--TGATATACA-GATATAGAATTTTAAANAACACA-CCGGCCCAA-TGG--C------TCACCCATACAAATA-AACAGTTATATC---GTTTCANNCGTGAANTTATGTTTGNNATTGAGCATCATCAAAAAGTAAANACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATT
Reference ( gi|1 ) : TACCAATACA---ATGC-TTAACGACA-T---TTTCAA--CAT------ATTCCAGGT----TA--CATATGGCATATC-----CAGT----T----T-G---GTGGAGGAAGA-CTTCA----GA------C------TGAGT------AGAACAACCGTAATTCCGCAAGTAACT-GA----AAAC-ATTCTCACATAAAGCTTTTG-GAGCAA-ACGGGACTCGAACCTACGA-CC-T-A-GCGGTGAGAG-GTAAGTGAT-C-TT-G------AGA---CA-CTA----CT-TAGGCCATTCGGCCACGGAGGACCC----TTAACA--TA-A------TTG--GA-T----A-AATTTTAG--CTT-TAGGTAAAT-------AAGT---T--A-T-TT-ATTATAGAGACAT----GTGTGC-ATGTGACA--TGGTATACA-GATATATAACTTTAATCAACACACCCGGCCTAA-TGA---------TTACCGATACAAATA-AACAGTTACATT---ATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATAGGCCGGGGCCGATTAGCTCAGTCGGTTACGCGTCTGACTATCAATCCAGGGGTCGTGTGTACGAATTCCCGCCCGACAACAGTCTTCGTGATGATTGATATACGACATGTGTCTCATTATCATTCGTCTCTCACTGTTGATTAAAAAAGGTGAAGTTATCAGTTACTTGAGGAGCCGGGGTGGTTGAGTATTGGTTAACCATTCAGGATCCCAGGAAACAGTGGTTCAGCTAACTGATCGTCTGTTAGCCCTCGATGCCATTCAAATGTCGCTAAATAGCCAATCTATCAAGTCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGA-CA-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAAC--TGCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTTGCTCCAAAGAGCTCACC
gi|6 : TACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTAAT----TAGGCATATAA-ATATT-----TA------T----T-G---GTGGCTGAA----TTC---------------------GCGT------AGAAGCACCATCGTTCCGTCAATAACT-GGCAGCAAAC-AATCTCACATATA--TTTTAAGACCGAGATGGG-TTCGAACCTATGA-CC-T-CTGCGATGAGAT-ATAAGAGGT-C-AT-T------AGA---CA-ATATCACCT-TAGATCGCTCGGCAACGTAG---CA----TAAATG--TA-ATGTTAGTTG--AA-TCCTAA-AATTTGAATCTTT-TA--TACA--------AAGT---G--T-T-TT-ATTTT--AAACAT----TCTTGCAATCT-ACA--TTCTGCTCA-GGTTTATA--TTTAAT
gi|22 : acgttttgacgtttttttaagtgtttttgaTGT-TTAATGAAA-TAGTTTTTAG--CAC------ATTTTATGT----TA--TATATGGCATATC-----Cttaatgtcat
gi|2 : aattattttttGT-TTAACGCCA-T---TTTCAA--CAC------ATTTCAGAT----TA--CATATTGCATACCATGTTCAGT----T----TTGATTGTGGAGAAAAC-CCTCA----GA------A------TGAATCTTGATAGAACCATCGTCCTTCCG---ATGATG-GC----AAAC-TTTCTCACATAAAGTTTTTG-GAGCGA-GCGGGACTCGAACCTACGA-CCTT-A-GCGGTGAGAA-TTAAGTGAT-C-TT-C------AGA---CG-GCAC---CT-TAGACCACTCAGTCtttttttccattg
gi|7 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-TTAAC-ATT-T---TTTTCA--CAT------GGGACAGGT----CA--AATATGGCACATC-----CAGTTTTAT----T-G---GTGGAGGAAAACCTTCA-----A------CAAAATTTTAGT------AGAACCACC------C--CAAGTAACC-GAC---AAACTTTTTTCACACAATGTTTATG-G-GCA----------TGAATCTACGT-TC-C-------TG---G-GTAAGTGGC-C-AT-T------AGA---CA-TCA----------GCTAT--AG--ACAGAGGACCC----CT
gi|3 : AACGTCA-T---TTTCAA--CAC------ATTTCAGGT----TA--TATATGGCATATC-----CCGTTTTAT----T-G---GTAGAGGAAGA-CTTCATAATGAAAT---C------TGAGT------AGAACCATTGTCCTCCTGAAAGTAACTAGC----AAAC-TTTCTCACATACCATTTTTG-GA-CAGTGTGGTACTCGAACCTATGA-CC-TAA-ATAGTGAGAG-TTTAGTGAT-C-TT-G------AGATGGCA-C------CT-TAGACCACTCGGCCAAGGAGAACCCACTGTT------TG-A------TTGTTAATT----ACAATATTAG--C----AGG-AAGTTCCTGGGAAGTGC-TCAA-T-TT-A-TGTA-ATTCAT-----TGTAG-ATAT--CA--TGATATATA-TATATATAgttttacaacagaataaatatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttggttaCA-T---TTTTAA--CAC------ATG--AAGT----TA--TTTATAG--TTTC-----AGGT----T----T-GCCGGTGGAAGAAGC-TCTCA----GAATGAATC------TGAGC------AGAACTGCCGTACTTCCGCATGCAACT-GGC---AAAC-ATTCTTGCGTAAAATATTTGTGAACGA-GCTTGGTTCCAACCAATGG-CT-C-A-TCGGTGGAAA-GTAACTGGTAT-TT-GGACGGAAGA---CA-GCG----CCGTAGACCACTCAGTCACGGAGGATCCAACTTTGAC---TC-T------CTGT-GC-T----ATAATCTCCA--CTTACAGGTGAAT-------GA-----T--A-T-TT-A------GGAC-------TGTAC-AT-TG-CAGCTAGT-TACA-GACATATTATTTT
gi|10 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaaacctA-T---TTTCAA--CAT------ATGCCAGGTTATATA--TATATATCATATT-----TAGT----TTTACT-G---GTGGAGGAAGA-C
gi|19 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaTTTTA-GAGCGA-ACGGTACTCAAACTTACGA-CC-T-T-G-GGGGTGAG-GTATGTGAT-C-TTCG------AGA---CA-GTG----CT-CAGG
gi|18 : tacaaaaA-ATGGG-CTCCAACCCACGA-CC-TCA-GCGATGTTAA-ATATATAAT---TT-G------AGA---T-----------------CAATCGGTCACAGAGGAGAC----TTAACAGTTA-A------TTG--ttttt
gi|9 : GAGATTTGA-CCCACAAACT-T-G-GCAGTGAGTT-TTAGCTGAT-C-TT-C------AGA---CA-TTA----CT-TA
gi|14 : gtatagaaacctctgtatatggtagaactacatgtaatgtcctatggcatgctttctcactttcactttctcttaaaatagagttCTCAAACCCACGA-CT-TTA-GCGGTGAGAG-ATAcca
gi|16 : GTGAGAG-GTAAGTGGT-CGTT-GG-----AGGT--CAGCCA----AA-TATATCACTCGGCCTAGGAGGACCT----TTCATT--TA-G------TTG--AA-T----T-AATTTAAA--CTT-taaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|13 : GAGAATGTTAGTGAT-C-AA-G------AGA---AGTCTC----AT-TCGGCTATGCGGCCACGGAGGACCC----AAAACA--TATA------TTT--AA-T----A-AAAGATAG--CTT-T
gi|23 : -TAGGTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGACATGACAGTGTAC-ATGTAATA--TGATATACA-GAtttaatatggcaaata
gi|8 : gAAGTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGGCAT----GTGCAC-ATGTAACA--TGATATACA-GATAAAGAACTTTAAAAAACACA-CAGGCCCAACTGACATATAT--TCACACATACAAATA-AACAGTTATATC---A-TTCACA--T-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATA-
gi|12 : aGGTAGTT-------AGGT---A--C-T-TT-ATTATAGTGACA------TGTGC-AT-----A--TGATATACATTATATAGAATTTTAAAGAACACAACCAGCTAAA-TGG---------T--CC--TATAAGTAGAATA-CCACATTTCAATTTCtata
gi|17 : g---T--A-TATT-ATTATAGTGGTAT----GTGTAC-ATGTAACA--TAATATACA-AATATAGAATTTTAAACACCACA
gi|5 : atattatacgaaagaaattaaACA-GATATAGAATGTTAAACAACACCCCTGACCCAA-TGGACCTATAAGTCACCTATACAAATA-ACC-GTTCTATC---GTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTTATTCATTTATTGGTCCAACGCCATTTTCAACATTTAGTAGGTTATATAAATTTTGATCTCCCTTTTTATTTGTCGGAAATGACCTTGGTTGCATATCCATGACTCTGAGTAA
Unaligned ( gi|15 ): TGATTTAAACTAGCAGAGAGTTACTTGAGATGGCACCAAAAACTACTCAGCCATGGAAGATCCTCACTTGTCTATTAACTAATAACA
Unaligned ( gi|20 ): TGAACTCTGACCTATGACCTAAGTTTTGAAAAGTTAGTGGCAATCAGAAAGCAAAGTTCTTAGACCAATCGTCCAAGGAT
Unaligned ( gi|21 ): AAAGTAACTGGCTAAATTTCTTGCATTTTATGCTTTGGCCGGTATGGAATTGAGCCGACTACCTAAGTGGTGAG
Unaligned ( gi|24 ): CAGAACAATTGTCCTTCTGCAAGTAACTAGCAAATTTTTCATAA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 11 11111111 333333333333333333 6666666666666666666666666 111 11111111 222222222222 666666666666666666666666666666666666666666666666666666666 3333333333333333333 11111 111 1 1 8888888888888888 333333 1 222 333 11 1 1 555555 22 11 11 33333333 333 1 7777777777777 333333333
lowQualScore : 000 5 1 4 777 11 9999 99999 33333333 666666666666666666 3333333333333333333333333 4 3 1 888 55 1 5 888 5 0 5 0 55 4 3 555 44 0 3 3 11111111 2 777777777777 4 1 777777777777777777777777777777777777777777777777777777777 1 1 6 5 99 5555555555555555555 5 5 1 1 77 22222 0 5 3 5 1 111 0 0 0 8888888888888888 3 7 88 555555 6 1 22 0 0 0 1 2 111 4 4 3 4 555 3 88 4 4 4 4 3 4 3 5 5 777777 4 77 77 88 66666666 555 2 4 5 5555555555555 777777777 4 3 2 3 4
lowQualScore : ... . . . ... .. .... ..... ........ .................. ......................... . . . ... .. . . ... . . . . .. . . ... .. . . . ........ . ............ . . ......................................................... . . . . .. ................... . . . . .. ..... . . . . . ... . . . ................ . . .. ...... . . .. . . . . . ... . . . . ... . .. . . . . . . . . . ...... . .. .. .. ........ ... . . . ............. ......... . . . . .
lowQualScore : 555 7 0 4 888 11 4444 66666 00000000 444444444444444444 7777777777777777777777777 3 0 0 888 88 6 3 888 0 2 0 4 22 0 6 999 55 7 3 3 33333333 2 222222222222 0 9 000000000000000000000000000000000000000000000000000000000 0 0 7 7 22 1111111111111111111 7 7 4 7 99 99999 1 7 6 0 0 888 0 2 0 1111111111111111 7 3 00 777777 7 0 00 7 7 7 0 0 555 0 0 0 0 000 0 00 0 0 0 0 0 0 0 0 5 555555 0 55 55 55 00000000 000 5 0 0 0000000000000 000000000 0 0 5 0 0
consensus : TACCAATGCGTGCGTGT-TTAACGNCA-T---TTTCAACACATNNCAGG----TTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------TGAGTAGAACCACCGTCCTTCCGCAAGTAACTGGCA---AAC-TTTCTCACATAAAGTTT---TTG-GAGC-GAGC-GGGACTCGAACCTACGA-CC-T-A-GCGGTGAGAG-GTAAGTGAT-C-TT-G------AGACGNC-G----C-T---TAGA-CCACTCGGCCACGGAGGACCC----T-----------TAA--------C---TA-ATTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCNATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAACGNCA-T---TTTCAACACATGTCAGG----TTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GAA-----C------TGAGTAGAACCACCGTCCTTCCGCAAGTAACTGNCA---AAC-TTTCTCACATAAAGTTT---TTG-GAGC-GAGC-GGGACTCGAACCTACGA-CC-T-A-GCGGTGAGAG-GTAAGTGAT-C-TT-G------AGACANC-G----C-T---TAGA-CCACTCGGCCACGGAGGACCC----T-----------TAA--------C---TA-ATTGA-----------AT----AAATNTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAANAACAC-A-CC-GGCCCAA-TGG--C------T------CACCCATACAAATAAACAGTTATATCGTTTCANNCGTGAANTTATGTTTGNNATTGAGCATCATCAAAAAGTAAANACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATT
gi|1 : TACCAATACA---ATGC-TTAACGACA-T---TTTCAACATATTCCAGG----TTA----CATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GA------C------TGAGTAGAACAACCGTAATTCCGCAAGTAACTGA-A---AAC-ATTCTCACATAAAGCTT---TTG-GAGC-AAAC-GGGACTCGAACCTACGA-CC-T-A-GCGGTGAGAG-GTAAGTGAT-C-TT-G------AGACACT-A----C-T---TAGG-CCATTCGGCCACGGAGGACCC----T-----------TAA--------CA--TA-ATTGG-----------AT----AAATTTTAG-CTT-TAG--GTAAAT-------AAGT---T--A-T-TT-ATTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGA-CA-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAAC--TGCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagA-T---TTTCAACATATGCCAGG----TTATATATATATATCATATT-----TA-GT----TTTACT----G---GTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAACGCCA-T---TTTCAACATTTAGTAGG----TTA----TATA
gi|12 : tttattcatttattgG--GTAGTT-------AGGT---A--C-T-TT-ATTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--aattttgatctccctttttatttgtcggaaatgaccttggttgcatatccatgactctgagtaa
gi|13 : gGAGAATGTTAGTGAT-C-AA-G------AGAAGTC-T----CAT---TCGG-CTATGCGGCCACGGAGGACCC----A-----------AAA--------CA--TATATTTA-----------AT----AAAAGATAG-CTT-Ttcctataagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACGA-CT-TTA-GCGGTGAGAG-ATAtttaatatggcaaata
gi|15 : C-T-A-GCAG--AGAG-TTA-------C-TT-G------AGATGGC-A----C-C---AAAAACTACTCAGCCATGGAAGATCC----TCACTTGTCTATTAA--------C---TA-ATtaaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaaGTGAGAG-GTAAGTGGT-CGTT-G-------GAGGTCAG----C-CAAATATA-TCACTCGGCCTAGGAGGACCT----T-----------TCAT-------T---TA-GTTGA-----------AT----TAATTTAAA-CTT-aaca
gi|17 : ---T--A-TATT-ATTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaattaaGGGCTCCAACCCACGA-CC-TCA-GCGATGTTAA-ATATATAAT---TT-G--------------------------AGA-TCAATCGGTCACAGAGGAGAC----T-----------TAA--------CAGTTA-ATTG
gi|19 : aatTT---TTA-GAGC-GAAC-GGTACTCAAACTTACGA-CC-T-T-G-GGGGTGAG-GTATGTGAT-C-TTCG------AGACAGT-G----C-T---CAG
gi|2 : tacaaaaGT-TTAACGCCA-T---TTTCAACACATTTCAGA----TTA----CATATTGCATACCATGTTCA-GT----T----TT---GATTGTGGAGAAAACCCT----CA----GAA-----TGAATCTTGA-TAGAACCATCGTCCTTCCG---ATGA-TGGCA---AAC-TTTCTCACATAAAGTTT---TTG-GAGC-GAGC-GGGACTCGAACCTACGA-CCTT-A-GCGGTGAGAA-TTAAGTGAT-C-TT-C------AGACGGC-AC---C-T---TAGA-CCACTCAGTCgttttt
gi|22 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatgggTGT-TTAATGAAA-TAGTTTTTAGCACATTTTATG----TTA----TATATGGCATATC-----C
gi|23 : aattatttttt-TAG--GTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAtttttttccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTAGCA---AA--TTTTTCATA
gi|3 : cGT-TAAACGTCA-T---TTTCAACACATTTCAGG----TTA----TATATGGCATATC-----CC-GT----T----TTATTG---GTAGAGGAAGACTT----CATAATGAAAT---C------TGAGTAGAACCATTGTCCTCCTGAAAGTAACTAGCA---AAC-TTTCTCACATACCATTT---TTG-GACA-GTGT-GGTACTCGAACCTATGA-CC-TAA-ATAGTGAGAG-TTTAGTGAT-C-TT-G------AGATGGC-AC---C-T---TAGA-CCACTCGGCCAAGGAGAACCC------------------A--------C---TG-TTTGATT---------GT----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGGAAGTGC-TCAA-T-TT-AT----GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATAa
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAACCTCA-T---TTTTAACACATG--AAG----TTA----TTTATAG--TTTC-----AG-GT----T----T----GCCGGTGGAAGAAGCTCT----CA----GAATGAATC------TGAGCAGAACTGCCGTACTTCCGCATGCAACTGGCA---AAC-ATTCTTGCGTAAAATAT---TTGTGAAC-GAGC-TTGGTTCCAACCAATGG-CT-C-A-TCGGTGGAAA-GTAACTGGTAT-TT-GGACGGAAGACAGC-G----C-CG--TAGA-CCACTCAGTCACGGAGGATCC-----------------AA--------C---T---TTGACTCTCTGTGCTAT-----AATCTCCA-CTTACAG--GTGAAT-------GA-----T--A-T-T------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTA----ATTA-GGCATATA-----AATAT----T----T----A---TTGGTGGCTGAATT----C---------------------GCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TTT---TAA-GACC-GAGA-TGGGTTCGAACCTATGA-CC-T-CTGCGATGAGAT-ATAAGAGGT-C-AT-T------AGACAAT-ATCACC-T---TAGA-TCGCTCGGCAACGTAGCA-------------------TAAATGTAATGT---TA-GTTGA-----------ATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAACATTT-T---TTTCA-CATGGGACAGG----TCA----AATATGGCACATC-----CA-GTTTTAT----T----G---GTGGAGGAAAACCTTCAACA----AAAT----T------TTAGTAGAACCACC--C------CAAGTAACCGACA---AACTTTTTTCACACAATGTTT---ATG-G-GC-A----------TGAATCTACGT-TC-C-------TG---G-GTAAGTGGC-C-AT-T------AGACATCAG----C-TA--TAG------------ACAGAGGACCCCTGTT-----------TTA--------C----A-ACAGA-----------AT----AAATATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
gi|9 : aTGGCA---TGC-TTTCTCACTTTCACTTTCTCTTA-AAATAGAGTTGAGATTTGA-CCCACAAACT-T-G-GCAGTGAGTT-TTAGCTGAT-C-TT-C------AGACATT-A----C-T---TA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TGAACTCTGACCTATGACCTAAGTTTTGAAAAGTTAGTGGCAATCAGAAAGCAAAGTTCTTAGACCAATCGTCCAAGGAT
Unaligned ( gi|21 ): AAAGTAACTGGCTAAATTTCTTGCATTTTATGCTTTGGCCGGTATGGAATTGAGCCGACTACCTAAGTGGTGAG
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 11111 11111111 333333333333333333 5555555555555555555555555 11111 111 11111111111 3333333333333 666666666666666666666666666666666666666666666666666666666 3333333333333333333 11111 111 1 1 88888888888888888 222222 1 222 222 11 222 333333 11 11 11 33333333 222 1 3333333333333 222 11
lowQualScore : 000 5 5 1 777 66 9999 22222 33333333 666666666666666666 1 4444444444444444444444444 6 4 3 888 55 888 22222 5 0 2 555 3 999 0 3 555 3 11111111111 333 5555555555555 3 1 777777777777777777777777777777777777777777777777777777777 1 8 6 99 5555555555555555555 5 5 1 1 77 22222 0 5 3 5 111 0 0 0 11111111111111111 1 7 88 111111 6 2 111 1 1 1 1 111 1 66 1 1 1 1 1 1 1 111 000000 1 88 77 88 66666666 111 1 1 5 4444444444444 111 1 88 1 1 1 1 1
lowQualScore : ... . . . ... .. .... ..... ........ .................. . ......................... . . . ... .. ... ..... . . . ... . ... . . ... . ........... ... ............. . . ......................................................... . . . .. ................... . . . . .. ..... . . . . ... . . . ................. . . .. ...... . . ... . . . . ... . .. . . . . . . . ... ...... . .. .. .. ........ ... . . . ............. ... . .. . . . . .
lowQualScore : 555 7 0 0 888 33 4444 11111 00000000 444444444444444444 3 2222222222222222222222222 7 3 0 888 88 444 55555 0 1 2 666 3 222 2 1 888 3 33333333333 222 6666666666666 6 9 000000000000000000000000000000000000000000000000000000000 0 0 7 22 1111111111111111111 7 7 4 7 99 99999 1 7 6 0 888 0 2 0 22222222222222222 0 3 00 777777 7 0 555 0 0 0 0 555 0 55 0 0 0 0 0 0 0 555 000000 0 00 55 55 00000000 555 0 0 0 0000000000000 000 0 00 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGA-CCACTCGGCCACGGAGGACCC----T-----------TAA--------C---TA-ATTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAA-CGNCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGNC-G-----C-T---TAGA-CCACTCGGCCACGGAGGACCC----T-----------TAA--------C---TA-ATTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCNATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
gi|1 : TACCAATACA---ATGC-TTAA-CGACAT---TTTCAACATATTCCA----GGTTA----CATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GA------C------T-GAGTAGAACAACCGTAATTCCGCAAGTAACTG---A-AAAC-ATTCTCACATAAAGCT-----TTTG-GAGCAAACG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACACT-A-----C-T---TAGG-CCATTCGGCCACGGAGGACCC----T-----------TAA--------CA--TA-ATTGG-----------AT----AAATTTTAG-CTT-TAG--GTAAAT-------AAGT---T--A-T-TT-ATTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGAC-A-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAACT--GCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagAT---TTTCAACATATGCCA----GGTTATATATATATATCATATT-----TA-GT----TTTACT----G---GTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAA-CGCCAT---TTTCAACATTTAGTA----GGTTA----TATA
gi|12 : tttattcatttattgG--GTAGTT-------AGGT---A--C-T-TT-ATTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--T---------------CCTATAaattttgatctccctttttatttgtcggaaatgaccttggttgcatatccatgactctgagtaa
gi|13 : gGAGAATGTTAGTG---AT-C-AA-G------AGAAGTC-T-----CAT---TCGG-CTATGCGGCCACGGAGGACCC----A-----------AAA--------CA--TATATTTA-----------AT----AAAagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACGACT-TTA-GCGGTGAGAG-ATAagatagcttttttaatatggcaaata
gi|15 : C-T-A-GCAG--AGAG-TTA----------C-TT-G------AGATGGC-A-----C-C---AAAAACTACTCAGCCATGGAAGATCC----TCACTTGTCTATTAA--------C---TA-ATtaaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaaGTGAGAG-GTAAGTG---GT-CGTT-G-------GAGGTCAG-----C-CAAATATA-TCACTCGGCCTAGGAGGACCT----T-----------TCAT-------T---TA-GTTGA-----------AT----TAATTTAAA-CTT-aaca
gi|17 : ---T--A-TATT-ATTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaattaa-GGGCTCCAACCCACGACC-TCA-GCGATGTTAA-ATATATA---AT---TT-G---------------------------AGA-TCAATCGGTCACAGAGGAGAC----T-----------TAA--------CAGTTA-ATTG
gi|19 : aatT-----TTTA-GAGCGAACG-GTACTCAAACTTACGACC-T-T-G-GGGGTGAG-GTATGTG---AT-C-TTCG------AGACAGT-G-----C-T---CAG
gi|2 : tacaaaaGT-TTAA-CGCCAT---TTTCAACACATTTCA----GATTA----CATATTGCATACCATGTTCA-GT----T----TT---GATTGTGGAGAAAACCCT----CA----GAA-----TGAATCTT-GA-TAGAACCATCGTCCTTCCG---ATGA-TG---GCAAAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACCTT-A-GCGGTGAGAA-TTAAGTG---AT-C-TT-C------AGACGGC-AC----C-T---TAGA-CCACTCAGTCgttttt
gi|20 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-GAACTCTGACCTATGACC-T-AAGTTTTGAAAA-GTTAGTGGCAAT-C-----------AGAAAGC-AAAGTTC-T---TAGA-CCAATCGTCCAAGGA
gi|21 : tAAGTAACTG---GCTAAA-TTTCTTGCAT----TTTATGCTTTG---GCCGGTATGGAATTGAGCCGACTACC-TAA-GTGGTGAGt
gi|22 : aTGT-TTAA-TGAAATAGTTTTTAGCACATTTTA----TGTTA----TATATGGCATATC-----C
gi|23 : aattatttttt-TAG--GTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAtttttttccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTA---GCAAA--TTTTTCATA
gi|3 : cGT-TAAA-CGTCAT---TTTCAACACATTTCA----GGTTA----TATATGGCATATC-----CC-GT----T----TTATTG---GTAGAGGAAGACTT----CATAATGAAAT---C------T-GAGTAGAACCATTGTCCTCCTGAAAGTAACTA---GCAAAC-TTTCTCACATACCATT-----TTTG-GACAGTGTG-GTACTCGAACCTATGACC-TAA-ATAGTGAGAG-TTTAGTG---AT-C-TT-G------AGATGGC-AC----C-T---TAGA-CCACTCGGCCAAGGAGAACCC------------------A--------C---TG-TTTGATT---------GT----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGGAAGTGC-TCAA-T-TT-AT----GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATAa
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAA-CCTCAT---TTTTAACACATG--A----AGTTA----TTTATAG--TTTC-----AG-GT----T----T----GCCGGTGGAAGAAGCTCT----CA----GAATGAATC------T-GAGCAGAACTGCCGTACTTCCGCATGCAACTG---GCAAAC-ATTCTTGCGTAAAATA-----TTTGTGAACGAGCT-TGGTTCCAACCAATGGCT-C-A-TCGGTGGAAA-GTAACTG---GTAT-TT-GGACGGAAGACAGC-G-----C-CG--TAGA-CCACTCAGTCACGGAGGATCC-----------------AA--------C---T---TTGACTCTCTGTGCTAT-----AATCTCCA-CTTACAG--GTGAAT-------GA-----T--A-T-T------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTA-----ATTAGGCATATA-----AATAT----T----T----A---TTGGTGG-----CT----------GAA-----T------TCGCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TT-----TTAA-GACCGAGAT-GGGTTCGAACCTATGACC-T-CTGCGATGAGAT-ATAAGAG---GT-C-AT-T------AGACAAT-ATCAC-C-T---TAGA-TCGCTCGGCAACGTAGCA-------------------TAAATGTAATGT---TA-GTTGA-----------ATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAA-CATTTT---TTTCA-CATGGGACA----GGTCA----AATATGGCACATC-----CA-GTTTTAT----T----G---GTGGAGGAAAACCTTCAACA----AAAT----T------T-TAGTAGAACCACC--C------CAAGTAACCG---ACAAACTTTTTTCACACAATGTT-----TATG-G-GCA----------TGAATCTACGTTC-C-------TG---G-GTAAGTG---GC-C-AT-T------AGACATCAG-----C-TA--TAG------------ACAGAGGACCCCTGTT-----------TTA--------C----A-ACAGA-----------AT----AAATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTATAGAAACCTCTGTATATGGTAGAACTACATGTAATGTCCTATGGCATGCTTTCTCACTTTCACTTTCTCTTAAAATAGAGTTGAGATTTGACCCACAAACTTGGCAGTGAGTTTTAGCTGATCTTCAGACATTACTTACCA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 11111 11111111 333333333333333333 5555555555555555555555555 11111 111 11111111111 3333333333333 5555555555555555555555555555555555555555555555 3333333333333333333 11111 111 1 1 88888888888888888 222222 1 222 222 11 222 333333 11 11 11 33333333 222 1 3333333333333 222 11
lowQualScore : 000 5 5 2 777 66 9999 22222 33333333 666666666666666666 1 4444444444444444444444444 6 4 3 888 55 3 777 22222 5 0 2 555 3 999 0 3 555 3 11111111111 222 8888888888888 1 6666666666666666666666666666666666666666666666 1 8 6 99 5555555555555555555 5 5 1 1 77 22222 0 5 3 5 111 0 0 0 11111111111111111 0 7 88 111111 6 2 111 1 1 1 1 111 1 66 1 1 1 1 1 1 1 111 000000 1 88 77 88 66666666 111 1 1 5 4444444444444 111 1 88 1 1 1 1 1
lowQualScore : ... . . . ... .. .... ..... ........ .................. . ......................... . . . ... .. . ... ..... . . . ... . ... . . ... . ........... ... ............. . .............................................. . . . .. ................... . . . . .. ..... . . . . ... . . . ................. . . .. ...... . . ... . . . . ... . .. . . . . . . . ... ...... . .. .. .. ........ ... . . . ............. ... . .. . . . . .
lowQualScore : 555 7 0 2 888 33 4444 11111 00000000 444444444444444444 3 2222222222222222222222222 7 3 0 888 88 1 111 55555 0 1 2 666 3 222 2 1 888 3 33333333333 888 9999999999999 9 1111111111111111111111111111111111111111111111 0 0 7 22 1111111111111111111 7 7 4 7 99 99999 1 7 6 0 888 0 2 0 22222222222222222 8 3 00 777777 7 0 555 0 0 0 0 555 0 55 0 0 0 0 0 0 0 555 000000 0 00 55 55 00000000 555 0 0 0 0000000000000 000 0 00 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAA--------CA--TA-ATTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAA--------C---TA-ATTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
gi|1 : TACCAATACA---ATGC-TTAA-CGACAT---TTTCAACATATTCCA----GGTTA----CATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GA------C------T-GAGTAGAACAACCGTAATTCCGCAAGTAACTG---A-AAAC-ATTCTCACATAAAGCT-----TTTG-GAGCAAACG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACACT-A-----C-T---TAGGCCATTCGGCCACGGAGGACCC----TTAA--------CA--TA-ATTGG-----------AT----AAATTTTAG-CTT-TAG--GTAAAT-------AAGT---T--A-T-TT-ATTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGAC-A-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAACT--GCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagAT---TTTCAACATATGCCA----GGTTATATATATATATCATATT-----TA-GT----TTTACT----G---GTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAA-CGCCAT---TTTCAACATTTAGTA----GGTTA----TATA
gi|12 : tttattcatttattgG--GTAGTT-------AGGT---A--C-T-TT-ATTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--T---------------CCTATAaattttgatctccctttttatttgtcggaaatgaccttggttgcatatccatgactctgagtaa
gi|13 : gGAGAATGTTAGTG---AT-C-AA-G------AGAAGTC-T-----CAT---TCGGCTATGCGGCCACGGAGGACCC----AAAA--------CA--TATATTTA-----------AT----AAAagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACGACT-TTA-GCGGTGAGAG-ATAagatagcttttttaatatggcaaata
gi|15 : C-T-A-GCAG--AGAG-TTA----------C-TT-G------AGATGGC-A-----C-CA--AAAACTACTCAGCCATGGAAGATCC----TCAtaaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaaGTGAGAG-GTAAGTG---GT-CGTT-G-------GAGGTCAG-----C-CAAATATATCACTCGGCCTAGGAGGACCT----TTCAT-------T---TA-GTTGA-----------AT----TAATTTAAA-CTT-cttgtctattaactaataaca
gi|17 : ---T--A-TATT-ATTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaattaa-GGGCTCCAACCCACGACC-TCA-GCGATGTTAA-ATATATA---AT---TT-G---------------------------AGATCAATCGGTCACAGAGGAGAC----TTAA--------CAGTTA-ATTG
gi|19 : aatT-----TTTA-GAGCGAACG-GTACTCAAACTTACGACC-T-T-G-GGGGTGAG-GTATGTG---AT-C-TTCG------AGACAGT-G-----C-T---CAG
gi|2 : tacaaaaGT-TTAA-CGCCAT---TTTCAACACATTTCA----GATTA----CATATTGCATACCATGTTCA-GT----T----TT---GATTGTGGAGAAAACCCT----CA----GAA-----TGAATCTT-GA-TAGAACCATCGTCCTTCCG---ATGA-TG---GCAAAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACCTT-A-GCGGTGAGAA-TTAAGTG---AT-C-TT-C------AGACGGC-AC----C-T---TAGACCACTCAGTCgttttt
gi|20 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-GAACTCTGACCTATGACC-T-AAGTTTTGAAAA-GTTAGTGGCAAT-C-----------AGAAAGC-AAAGTTC-T---TAGACCAATCGTCCAAGGA
gi|21 : tAAGTAACTG---GCTAAA-TTTCTTGCAT----TTTATGCTTTG---GCCGGTATGGAATTGAGCCGACTACC-TAA-GTGGTGAGt
gi|22 : aTGT-TTAA-TGAAATAGTTTTTAGCACATTTTA----TGTTA----TATATGGCATATC-----C
gi|23 : aattatttttt-TAG--GTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAtttttttccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTA---GCAAAT-TTTT---CATAA
gi|3 : cGT-TAAA-CGTCAT---TTTCAACACATTTCA----GGTTA----TATATGGCATATC-----CC-GT----T----TTATTG---GTAGAGGAAGACTT----CATAATGAAAT---C------T-GAGTAGAACCATTGTCCTCCTGAAAGTAACTA---GCAAAC-TTTCTCACATACCATT-----TTTG-GACAGTGTG-GTACTCGAACCTATGACC-TAA-ATAGTGAGAG-TTTAGTG---AT-C-TT-G------AGATGGC-AC----C-T---TAGACCACTCGGCCAAGGAGAACCC-------A--------C---TG-TTTGATT---------GT----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGGAAGTGC-TCAA-T-TT-AT----GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATA
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAA-CCTCAT---TTTTAACACATG--A----AGTTA----TTTATAG--TTTC-----AG-GT----T----T----GCCGGTGGAAGAAGCTCT----CA----GAATGAATC------T-GAGCAGAACTGCCGTACTTCCGCATGCAACTG---GCAAAC-ATTCTTGCGTAAAATA-----TTTGTGAACGAGCT-TGGTTCCAACCAATGGCT-C-A-TCGGTGGAAA-GTAACTG---GTAT-TT-GGACGGAAGACAGC-G-----C-CG--TAGACCACTCAGTCACGGAGGATCC------AA--------C---T---TTGACTCTCTGTGCTAT-----AATCTCCA-CTTACAG--GTGAAT-------GA-----T--A-T-T------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTA-----ATTAGGCATATA-----AATAT----T----T----A---TTGGTGG-----CT----------GAA-----T------TCGCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TT-----TTAA-GACCGAGAT-GGGTTCGAACCTATGACC-T-CTGCGATGAGAT-ATAAGAG---GT-C-AT-T------AGACAAT-ATCAC-C-T---TAGATCGCTCGGCAACGTAGCA--------TAAATGTAATGT---TA-GTTGA-----------ATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAA-CATTTT---TTTCA-CATGGGACA----GGTCA----AATATGGCACATC-----CA-GTTTTAT----T----G---GTGGAGGAAAACCTTCAACA----AAAT----T------T-TAGTAGAACCACC--C------CAAGTAACCG---ACAAACTTTTTTCACACAATGTT-----TATG-G-GCA----------TGAATCTACGTTC-C-------TG---G-GTAAGTG---GC-C-AT-T------AGACATCAG-----C-TA--TAG-----------ACAGAGGACCCCTGTTTTA--------C----A-ACAGA-----------AT----AAATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTATAGAAACCTCTGTATATGGTAGAACTACATGTAATGTCCTATGGCATGCTTTCTCACTTTCACTTTCTCTTAAAATAGAGTTGAGATTTGACCCACAAACTTGGCAGTGAGTTTTAGCTGATCTTCAGACATTACTTACCA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 11111 11111111 333333333333333333 5555555555555555555555555 11111 111 11111111111 33333333333333333 44444444444444444444444444444444444444444444 3333333333333333333 11111 111 1 1 88888888888888888 222222 1 222 222 11 222 333333 11 11 11 33333333 222 1 3333333333333 222 11
lowQualScore : 000 5 5 2 777 66 9999 22222 33333333 666666666666666666 1 4444444444444444444444444 6 4 3 888 55 3 777 22222 5 0 2 555 3 999 0 3 555 3 11111111111 99999999999999999 0 99999999999999999999999999999999999999999999 1 8 6 99 5555555555555555555 5 5 1 1 77 22222 0 5 3 5 111 0 0 0 11111111111111111 0 7 88 111111 6 2 111 1 1 1 1 111 1 66 1 1 1 1 1 1 1 111 000000 1 88 77 88 66666666 111 1 1 5 4444444444444 111 1 88 1 1 1 1 1
lowQualScore : ... . . . ... .. .... ..... ........ .................. . ......................... . . . ... .. . ... ..... . . . ... . ... . . ... . ........... ................. . ............................................ . . . .. ................... . . . . .. ..... . . . . ... . . . ................. . . .. ...... . . ... . . . . ... . .. . . . . . . . ... ...... . .. .. .. ........ ... . . . ............. ... . .. . . . . .
lowQualScore : 555 7 0 2 888 33 4444 11111 00000000 444444444444444444 3 2222222222222222222222222 7 3 0 888 88 1 111 55555 0 1 2 666 3 222 2 1 888 3 33333333333 22222222222222222 4 55555555555555555555555555555555555555555555 0 0 7 22 1111111111111111111 7 7 4 7 99 99999 1 7 6 0 888 0 2 0 22222222222222222 8 3 00 777777 7 0 555 0 0 0 0 555 0 55 0 0 0 0 0 0 0 555 000000 0 00 55 55 00000000 555 0 0 0 0000000000000 000 0 00 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAACG--TA-A------TTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAACA--TA-A------TTGA-----------AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
gi|1 : TACCAATACA---ATGC-TTAA-CGACAT---TTTCAACATATTCCA----GGTTA----CATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GA------C------T-GAGTAGAACAACCGTAATTCCGCAAGTAACTG---A-AAAC-ATTCTCACATAAAGCT-----TTTG-GAGCAAACG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACACT-A-----C-T---TAGGCCATTCGGCCACGGAGGACCC----TTAACA--TA-A------TTGG-----------AT----AAATTTTAG-CTT-TAG--GTAAAT-------AAGT---T--A-T-TT-ATTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGAC-A-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAACT--GCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagAT---TTTCAACATATGCCA----GGTTATATATATATATCATATT-----TA-GT----TTTACT----G---GTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAA-CGCCAT---TTTCAACATTTAGTA----GGTTA----TATA
gi|12 : tttattcatttattgG--GTAGTT-------AGGT---A--C-T-TT-ATTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--T---------------CCTATAaattttgatctccctttttatttgtcggaaatgaccttggttgcatatccatgactctgagtaa
gi|13 : gGAGAATGTTAGTG---AT-C-AA-G------AGAAGTC-T-----CAT---TCGGCTATGCGGCCACGGAGGACCC----AAAACA--TATA------TTTA-----------AT----AAAagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACGACT-TTA-GCGGTGAGAG-ATAagatagcttttttaatatggcaaata
gi|15 : C-T-A-GCAG--AGAG-TTA----------C-TT-G------AGATGGC-A-----C-CA--AAAACTACTCAGCCATGGAAGATCC----TCAtaaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaaGTGAGAG-GTAAGTG---GT-CGTT-G-------GAGGTCAG-----C-CAAATATATCACTCGGCCTAGGAGGACCT----TTCATT--TA-G------TTGA-----------AT----TAATTTAAA-CTT-cttgtctattaactaataaca
gi|17 : ---T--A-TATT-ATTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaattaa-GGGCTCCAACCCACGACC-TCA-GCGATGTTAA-ATATATA---AT---TT-G------AGAT---------------------CAATCGGTCACAGAGGAGAC----TTAACAGTTA-A------TTG
gi|19 : aatT-----TTTA-GAGCGAACG-GTACTCAAACTTACGACC-T-T-G-GGGGTGAG-GTATGTG---AT-C-TTCG------AGACAGT-G-----C-T---CAG
gi|2 : tacaaaaGT-TTAA-CGCCAT---TTTCAACACATTTCA----GATTA----CATATTGCATACCATGTTCA-GT----T----TT---GATTGTGGAGAAAACCCT----CA----GAA-----TGAATCTT-GA-TAGAACCATCGTCCTTCCG---ATGA-TG---GCAAAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACCTT-A-GCGGTGAGAA-TTAAGTG---AT-C-TT-C------AGACGGC-AC----C-T---TAGACCACTCAGTCgttttt
gi|20 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-GAACTCTGACCTATGACC-T-AAGTTTTGAAAA-GTTAGTGGCAAT-C-----------AGAAAGC-AAAGTTC-T---TAGACCAATCGTCCAAGGA
gi|21 : tAAGTAACTG---GCTAAA-TTTCTTGCAT----TTTATGCTTTG---GCCGGTATGGAATTGAGCCGACTACC-TAA-GTGGTGAGt
gi|22 : aTGT-TTAA-TGAAATAGTTTTTAGCACATTTTA----TGTTA----TATATGGCATATC-----C
gi|23 : aattatttttt-TAG--GTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAtttttttccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTA---GCAAAT-TTTT---CATAA
gi|3 : cGT-TAAA-CGTCAT---TTTCAACACATTTCA----GGTTA----TATATGGCATATC-----CC-GT----T----TTATTG---GTAGAGGAAGACTT----CATAATGAAAT---C------T-GAGTAGAACCATTGTCCTCCTGAAAGTAACTA---GCAAAC-TTTCTCACATACCATT-----TTTG-GACAGTGTG-GTACTCGAACCTATGACC-TAA-ATAGTGAGAG-TTTAGTG---AT-C-TT-G------AGATGGC-AC----C-T---TAGACCACTCGGCCAAGGAGAACCCACTGTT------TG-A------TTG-------------T----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGGAAGTGC-TCAA-T-TT-AT----GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATA
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAA-CCTCAT---TTTTAACACATG--A----AGTTA----TTTATAG--TTTC-----AG-GT----T----T----GCCGGTGGAAGAAGCTCT----CA----GAATGAATC------T-GAGCAGAACTGCCGTACTTCCGCATGCAACTG---GCAAAC-ATTCTTGCGTAAAATA-----TTTGTGAACGAGCT-TGGTTCCAACCAATGGCT-C-A-TCGGTGGAAA-GTAACTG---GTAT-TT-GGACGGAAGACAGC-G-----C-CG--TAGACCACTCAGTCACGGAGGATCC------AAC---T---------TTGACTCTCTGTGCTAT-----AATCTCCA-CTTACAG--GTGAAT-------GA-----T--A-T-T------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTA-----ATTAGGCATATA-----AATAT----T----T----A---TTGGTGG-----CT----------GAA-----T------TCGCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TT-----TTAA-GACCGAGAT-GGGTTCGAACCTATGACC-T-CTGCGATGAGAT-ATAAGAG---GT-C-AT-T------AGACAAT-ATCAC-C-T---TAGATCGCTCGGCAACGTAG---CA----TAAATG--TA-ATGTTAGTTGA-----------ATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAA-CATTTT---TTTCA-CATGGGACA----GGTCA----AATATGGCACATC-----CA-GTTTTAT----T----G---GTGGAGGAAAACCTTCAACA----AAAT----T------T-TAGTAGAACCACC--C------CAAGTAACCG---ACAAACTTTTTTCACACAATGTT-----TATG-G-GCA----------TGAATCTACGTTC-C-------TG---G-GTAAGTG---GC-C-AT-T------AGACATCAG-----C-TA--TAG-----------ACAGAGGACCCCTGTTTTAC----A-A------CAGA-----------AT----AAATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTATAGAAACCTCTGTATATGGTAGAACTACATGTAATGTCCTATGGCATGCTTTCTCACTTTCACTTTCTCTTAAAATAGAGTTGAGATTTGACCCACAAACTTGGCAGTGAGTTTTAGCTGATCTTCAGACATTACTTACCA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 11111 11111111 333333333333333333 5555555555555555555555555 11111 111 11111111111 3333333333333 444444444444444444444444444 11111 3333333333333333333 11111 111 1 1 88888888888888888 222222 1 222 222 11 222 333333 11 11 11 33333333 222 1 3333333333333 222 11
lowQualScore : 000 5 5 2 777 66 9999 22222 33333333 666666666666666666 1 4444444444444444444444444 6 4 3 888 55 3 777 22222 5 0 2 555 3 999 0 3 555 3 11111111111 222 8888888888888 666666666666666666666666666 0 77 77777 1 8 6 99 5555555555555555555 5 5 1 1 77 22222 0 5 3 5 111 0 0 0 11111111111111111 0 7 88 111111 6 2 111 1 1 1 1 111 1 66 1 1 1 1 1 1 1 111 000000 1 88 77 88 66666666 111 1 1 5 4444444444444 111 1 88 1 1 1 1 1
lowQualScore : ... . . . ... .. .... ..... ........ .................. . ......................... . . . ... .. . ... ..... . . . ... . ... . . ... . ........... ... ............. ........................... . .. ..... . . . .. ................... . . . . .. ..... . . . . ... . . . ................. . . .. ...... . . ... . . . . ... . .. . . . . . . . ... ...... . .. .. .. ........ ... . . . ............. ... . .. . . . . .
lowQualScore : 555 7 0 2 888 33 4444 11111 00000000 444444444444444444 3 2222222222222222222222222 7 3 0 888 88 1 111 55555 0 1 2 666 3 222 2 1 888 3 33333333333 888 9999999999999 222222222222222222222222222 4 99 66666 0 0 7 22 1111111111111111111 7 7 4 7 99 99999 1 7 6 0 888 0 2 0 22222222222222222 8 3 00 777777 7 0 555 0 0 0 0 555 0 55 0 0 0 0 0 0 0 555 000000 0 00 55 55 00000000 555 0 0 0 0000000000000 000 0 00 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAAC-----G--TA-A------TTGA--AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAAC-----G--TA-A------TTGA--AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
gi|1 : TACCAATACA---ATGC-TTAA-CGACAT---TTTCAACATATTCCA----GGTTA----CATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GA------C------T-GAGTAGAACAACCGTAATTCCGCAAGTAACTG---A-AAAC-ATTCTCACATAAAGCT-----TTTG-GAGCAAACG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACACT-A-----C-T---TAGGCCATTCGGCCACGGAGGACCC----TTAAC-----A--TA-A------TTGG--AT----AAATTTTAG-CTT-TAG--GTAAAT-------AAGT---T--A-T-TT-ATTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGAC-A-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAACT--GCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagAT---TTTCAACATATGCCA----GGTTATATATATATATCATATT-----TA-GT----TTTACT----G---GTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAA-CGCCAT---TTTCAACATTTAGTA----GGTTA----TATA
gi|12 : tttattcatttattgG--GTAGTT-------AGGT---A--C-T-TT-ATTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--T---------------CCTATAaattttgatctccctttttatttgtcggaaatgaccttggttgcatatccatgactctgagtaa
gi|13 : gGAGAATGTTAGTG---AT-C-AA-G------AGAAGTC-T-----CAT---TCGGCTATGCGGCCACGGAGGACCC----AAAAC-----A--TATA------TTTA--AT----AAAagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACGACT-TTA-GCGGTGAGAG-ATAagatagcttttttaatatggcaaata
gi|15 : C-T-A-GCAG--AGAG-TTA----------C-TT-G------AGATGGC-A-----C-CA--AAAACTACTCAGCCATGGAAGATCC----TCAtaaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaaGTGAGAG-GTAAGTG---GT-CGTT-G-------GAGGTCAG-----C-CAAATATATCACTCGGCCTAGGAGGACCT----TTCAT-----T--TA-G------TTGA--AT----TAATTTAAA-CTT-cttgtctattaactaataaca
gi|17 : ---T--A-TATT-ATTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaattaa-GGGCTCCAACCCACGACC-TCA-GCGATGTTAA-ATATATA---AT---TT-G---------------------------AGATCAATCGGTCACAGAGGAGAC----TTAAC-----AGTTA-A------TTG
gi|19 : aatT-----TTTA-GAGCGAACG-GTACTCAAACTTACGACC-T-T-G-GGGGTGAG-GTATGTG---AT-C-TTCG------AGACAGT-G-----C-T---CAG
gi|2 : tacaaaaGT-TTAA-CGCCAT---TTTCAACACATTTCA----GATTA----CATATTGCATACCATGTTCA-GT----T----TT---GATTGTGGAGAAAACCCT----CA----GAA-----TGAATCTT-GA-TAGAACCATCGTCCTTCCG---ATGA-TG---GCAAAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACCTT-A-GCGGTGAGAA-TTAAGTG---AT-C-TT-C------AGACGGC-AC----C-T---TAGACCACTCAGTCgttttt
gi|20 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-GAACTCTGACCTATGACC-T-AAGTTTTGAAAA-GTTAGTGGCAAT-C-----------AGAAAGC-AAAGTTC-T---TAGACCAATCGTCCAAGGA
gi|21 : tAAGTAACTG---GCTAAA-TTTCTTGCAT----TTTATGCTTTG---GCCGGTATGGAATTGAGCCGACTACC-TAA-GTGGTGAGt
gi|22 : aTGT-TTAA-TGAAATAGTTTTTAGCACATTTTA----TGTTA----TATATGGCATATC-----C
gi|23 : aattatttttt-TAG--GTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAtttttttccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTA---GCAAAT-TTTT---CATAA
gi|3 : cGT-TAAA-CGTCAT---TTTCAACACATTTCA----GGTTA----TATATGGCATATC-----CC-GT----T----TTATTG---GTAGAGGAAGACTT----CATAATGAAAT---C------T-GAGTAGAACCATTGTCCTCCTGAAAGTAACTA---GCAAAC-TTTCTCACATACCATT-----TTTG-GACAGTGTG-GTACTCGAACCTATGACC-TAA-ATAGTGAGAG-TTTAGTG---AT-C-TT-G------AGATGGC-AC----C-T---TAGACCACTCGGCCAAGGAGAACCC-------ACT----G--T---------TTGATTGT----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGGAAGTGC-TCAA-T-TT-AT----GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATA
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAA-CCTCAT---TTTTAACACATG--A----AGTTA----TTTATAG--TTTC-----AG-GT----T----T----GCCGGTGGAAGAAGCTCT----CA----GAATGAATC------T-GAGCAGAACTGCCGTACTTCCGCATGCAACTG---GCAAAC-ATTCTTGCGTAAAATA-----TTTGTGAACGAGCT-TGGTTCCAACCAATGGCT-C-A-TCGGTGGAAA-GTAACTG---GTAT-TT-GGACGGAAGACAGC-G-----C-CG--TAGACCACTCAGTCACGGAGGATCCAACTTTGACTCTCTG--TG-C------T-----AT-----AATCTCCA-CTTACAG--GTGAAT-------GA-----T--A-T-T------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTA-----ATTAGGCATATA-----AATAT----T----T----A---TTGGTGG-----CT----------GAA-----T------TCGCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TT-----TTAA-GACCGAGAT-GGGTTCGAACCTATGACC-T-CTGCGATGAGAT-ATAAGAG---GT-C-AT-T------AGACAAT-ATCAC-C-T---TAGATCGCTCGGCAACGTAG---CA----TAAAT-----G--TA-ATGTTAGTTGA--ATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAA-CATTTT---TTTCA-CATGGGACA----GGTCA----AATATGGCACATC-----CA-GTTTTAT----T----G---GTGGAGGAAAACCTTCAACA----AAAT----T------T-TAGTAGAACCACC--C------CAAGTAACCG---ACAAACTTTTTTCACACAATGTT-----TATG-G-GCA----------TGAATCTACGTTC-C-------TG---G-GTAAGTG---GC-C-AT-T------AGACATCAG-----C-TA--TAG-----------ACAGAGGACCCCTGTTTTAC---------A-A------CAGA--AT----AAATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTATAGAAACCTCTGTATATGGTAGAACTACATGTAATGTCCTATGGCATGCTTTCTCACTTTCACTTTCTCTTAAAATAGAGTTGAGATTTGACCCACAAACTTGGCAGTGAGTTTTAGCTGATCTTCAGACATTACTTACCA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 11111 11111111 333333333333333333 5555555555555555555555555 11111 111 11111111111 3333333333333 444444444444444444444444444 11111 3333333333333333333 11111 111 1 1 88888888888888888 222222 1 222 222 11 222 333333 11 11 11 33333333 222 1 3333333333333 222 11
lowQualScore : 000 5 5 2 777 66 9999 22222 33333333 666666666666666666 1 4444444444444444444444444 6 4 3 888 55 3 777 22222 5 0 2 555 3 999 0 3 555 3 11111111111 222 8888888888888 666666666666666666666666666 0 77 77777 1 8 6 99 5555555555555555555 5 5 1 1 77 22222 0 5 3 5 111 0 0 0 11111111111111111 0 7 88 111111 6 2 111 1 1 1 1 111 1 66 1 1 1 1 1 1 1 111 000000 1 88 77 88 66666666 111 1 1 5 4444444444444 111 1 88 1 1 1 1 1
lowQualScore : ... . . . ... .. .... ..... ........ .................. . ......................... . . . ... .. . ... ..... . . . ... . ... . . ... . ........... ... ............. ........................... . .. ..... . . . .. ................... . . . . .. ..... . . . . ... . . . ................. . . .. ...... . . ... . . . . ... . .. . . . . . . . ... ...... . .. .. .. ........ ... . . . ............. ... . .. . . . . .
lowQualScore : 555 7 0 2 888 33 4444 11111 00000000 444444444444444444 3 2222222222222222222222222 7 3 0 888 88 1 111 55555 0 1 2 666 3 222 2 1 888 3 33333333333 888 9999999999999 222222222222222222222222222 4 99 66666 0 0 7 22 1111111111111111111 7 7 4 7 99 99999 1 7 6 0 888 0 2 0 22222222222222222 8 3 00 777777 7 0 555 0 0 0 0 555 0 55 0 0 0 0 0 0 0 555 000000 0 00 55 55 00000000 555 0 0 0 0000000000000 000 0 00 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAAC-----G--TA-A------TTGA--AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAAC-----G--TA-A------TTGA--AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
gi|1 : TACCAATACA---ATGC-TTAA-CGACAT---TTTCAACATATTCCA----GGTTA----CATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACTT----CA----GA------C------T-GAGTAGAACAACCGTAATTCCGCAAGTAACTG---A-AAAC-ATTCTCACATAAAGCT-----TTTG-GAGCAAACG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACACT-A-----C-T---TAGGCCATTCGGCCACGGAGGACCC----TTAAC-----A--TA-A------TTGG--AT----AAATTTTAG-CTT-TAG--GTAAAT-------AAGT---T--A-T-TT-ATTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGAC-A-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAACT--GCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagAT---TTTCAACATATGCCA----GGTTATATATATATATCATATT-----TA-GT----TTTACT----G---GTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAA-CGCCAT---TTTCAACATTTAGTA----GGTTA----TATA
gi|12 : tttattcatttattgG--GTAGTT-------AGGT---A--C-T-TT-ATTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--T---------------CCTATAaattttgatctccctttttatttgtcggaaatgaccttggttgcatatccatgactctgagtaa
gi|13 : gGAGAATGTTAGTG---AT-C-AA-G------AGAAGTC-T-----CAT---TCGGCTATGCGGCCACGGAGGACCC----AAAAC-----A--TATA------TTTA--AT----AAAagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACGACT-TTA-GCGGTGAGAG-ATAagatagcttttttaatatggcaaata
gi|15 : C-T-A-GCAG--AGAG-TTA----------C-TT-G------AGATGGC-A-----C-CA--AAAACTACTCAGCCATGGAAGATCC----TCAtaaatagcatcttcaaccatttaatcacagaatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaaGTGAGAG-GTAAGTG---GT-CGTT-G-------GAGGTCAG-----C-CAAATATATCACTCGGCCTAGGAGGACCT----TTCAT-----T--TA-G------TTGA--AT----TAATTTAAA-CTT-cttgtctattaactaataaca
gi|17 : ---T--A-TATT-ATTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaattaa-GGGCTCCAACCCACGACC-TCA-GCGATGTTAA-ATATATA---AT---TT-G---------------------------AGATCAATCGGTCACAGAGGAGAC----TTAAC-----AGTTA-A------TTG
gi|19 : aatT-----TTTA-GAGCGAACG-GTACTCAAACTTACGACC-T-T-G-GGGGTGAG-GTATGTG---AT-C-TTCG------AGACAGT-G-----C-T---CAG
gi|2 : tacaaaaGT-TTAA-CGCCAT---TTTCAACACATTTCA----GATTA----CATATTGCATACCATGTTCA-GT----T----TT---GATTGTGGAGAAAACCCT----CA----GAA-----TGAATCTT-GA-TAGAACCATCGTCCTTCCG---ATGA-TG---GCAAAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACCTT-A-GCGGTGAGAA-TTAAGTG---AT-C-TT-C------AGACGGC-AC----C-T---TAGACCACTCAGTCgttttt
gi|20 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-GAACTCTGACCTATGACC-T-AAGTTTTGAAAA-GTTAGTGGCAAT-C-----------AGAAAGC-AAAGTTC-T---TAGACCAATCGTCCAAGGA
gi|21 : tAAGTAACTG---GCTAAA-TTTCTTGCAT----TTTATGCTTTG---GCCGGTATGGAATTGAGCCGACTACC-TAA-GTGGTGAGt
gi|22 : aTGT-TTAA-TGAAATAGTTTTTAGCACATTTTA----TGTTA----TATATGGCATATC-----C
gi|23 : aattatttttt-TAG--GTAAGC-------AAGTAAAT--AGT-TT-ATTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAtttttttccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTA---GCAAAT-TTTT---CATAA
gi|3 : cGT-TAAA-CGTCAT---TTTCAACACATTTCA----GGTTA----TATATGGCATATC-----CC-GT----T----TTATTG---GTAGAGGAAGACTT----CATAATGAAAT---C------T-GAGTAGAACCATTGTCCTCCTGAAAGTAACTA---GCAAAC-TTTCTCACATACCATT-----TTTG-GACAGTGTG-GTACTCGAACCTATGACC-TAA-ATAGTGAGAG-TTTAGTG---AT-C-TT-G------AGATGGC-AC----C-T---TAGACCACTCGGCCAAGGAGAACCC-------ACT----G--T---------TTGATTGT----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGGAAGTGC-TCAA-T-TT-AT----GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATA
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAA-CCTCAT---TTTTAACACATG--A----AGTTA----TTTATAG--TTTC-----AG-GT----T----T----GCCGGTGGAAGAAGCTCT----CA----GAATGAATC------T-GAGCAGAACTGCCGTACTTCCGCATGCAACTG---GCAAAC-ATTCTTGCGTAAAATA-----TTTGTGAACGAGCT-TGGTTCCAACCAATGGCT-C-A-TCGGTGGAAA-GTAACTG---GTAT-TT-GGACGGAAGACAGC-G-----C-CG--TAGACCACTCAGTCACGGAGGATCCAACTTTGACTCTCTG--TG-C------T-----AT-----AATCTCCA-CTTACAG--GTGAAT-------GA-----T--A-T-T------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTA-----ATTAGGCATATA-----AATAT----T----T----A---TTGGTGG-----CT----------GAA-----T------TCGCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TT-----TTAA-GACCGAGAT-GGGTTCGAACCTATGACC-T-CTGCGATGAGAT-ATAAGAG---GT-C-AT-T------AGACAAT-ATCAC-C-T---TAGATCGCTCGGCAACGTAG---CA----TAAAT-----G--TA-ATGTTAGTTGA--ATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAA-CATTTT---TTTCA-CATGGGACA----GGTCA----AATATGGCACATC-----CA-GTTTTAT----T----G---GTGGAGGAAAACCTTCAACA----AAAT----T------T-TAGTAGAACCACC--C------CAAGTAACCG---ACAAACTTTTTTCACACAATGTT-----TATG-G-GCA----------TGAATCTACGTTC-C-------TG---G-GTAAGTG---GC-C-AT-T------AGACATCAG-----C-TA--TAG-----------ACAGAGGACCCCTGTTTTAC---------A-A------CAGA--AT----AAATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAGT-------GAGTAAAT--A-T-TTCATTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
blockSeqs : TGC G C C AGT GC TGAT TATAT ATGTTCA TTTACTG A CAGAATGAATCT C C C GCA TT A AAG TATGC T A TAT T TA T GCA A TTGGACGGA AGT AAAGTTCT AACTTTGACTCTCTGTGC TT CCTAA A T A CA TCCTGGGAAGTGCTCAA A C T T TT GACAG T A T AA T C ACCTATAAGTC A GT GTCG G C TAT T T T A . T GA T T T T T T A CAT . T . CC AT GTATTTAA . C T G AACC . G . A T C A T
blockSeqs : . . C . AG . T AAT TTTGATT C CATAATGAAATC . C A . T G CCA . . A CG . CA . . . GTTG TGG AGCCAAA TAAATGTAATGTTAG . A C . . . AAGTAAATAG . . T T . G . A . A . . CATATATTC . A CACA . T
blockSeqs : . . A . TT . C TA TTTATTG A CAGAATGAATC . C C . T A AAA . . G CG . AA . . . TTCG GGT ATCACCT TTAACAGTTAA . T C . . . GAGTAAATA . . T T . G . A . C . . T
blockSeqs : . . T . TT . T CC TTTATTG C TCAACAAAATT . C T . T G ATG . . T TG . AA . . . AAG CAG AGCTA CTGTTTTACAA . T G . . . AGGTAC . . T T . G . A . A
blockSeqs : . . T . TT . T AG TTGCCG A GAAT . G C . T A TA . . A CT . AA . . . TTG CGG TCAT AAAACATATA . A . . GATA . . . T . . . . .
blockSeqs : . . C . GA . T CA TTA . . . . A A . . . A AT . CT . . . TTG AAG ACCA TTCATTTAG . . . . . . . . . . .
blockSeqs : . T . GA . A . A . . . . . . A . . . TTC TGG ACCT ACTGT .
blockSeqs : . G . . . T . . . TTG CAG ACCT
blockSeqs : . A . . . ATT CAA GCCG
blockSeqs : . A . . . ATT CAT GCT
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons : TTTATTG*********** CANAATGAATC************** NA* ACCT********* TTAACNGTTAG**************** GGGTAAGTA********** A**
originalCons : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GT----T----T----G---GTGGAGGAAGACCT----CA----GAA-----C------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-T-A-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGC-G-----C-T---TAGACCACTCGGCCACGGAGGACCC----TTAAC-----G--TA-A------TTGA--AT----AAATTTNAA-CTT-TAG--GTAAGT-------AAGT---T--A-T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
finalCons : TACCAATGCGTGCGTGT-TTAA-CGCCAT---TTTCAACACATNNCA----GGTTA----TATATGGCATATC-----CA-GTTTTATTG-----------GTGGAGGAAGACCTCANAATGAATC--------------T-GAGTAGAACCACCGTCCTTCCGCAAGTAACTG---GCAAAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACGACC-TNA-GCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGGCACCT---------TAGACCACTCGGCCACGGAGGACCCTTAACNGTTAG----------------TTGA--AT----AAATTTNAA-CTT-TAG--GTAAGTGGGTAAGTA----------T-TT-ATTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACACA--CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTATAGAAACCTCTGTATATGGTAGAACTACATGTAATGTCCTATGGCATGCTTTCTCACTTTCACTTTCTCTTAAAATAGAGTTGAGATTTGACCCACAAACTTGGCAGTGAGTTTTAGCTGATCTTCAGACATTACTTACCA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG
Alignments
lowQualScore : 222 111111111111 11111 22222222222222222 11111 111111111111111111 1111111111 3333333333333333333333333 11111 11 111111111111 1 11111 111 1 1 88888888888888888 222222 1 222 222 11 222 333333 11 11 11 33333333 222 1 3333333333333 222 11
lowQualScore : 000 5 5 2 777 66 9999 0 111111111111 11111 1 4 44444444444444444 5 4 3 888 55 3 777 22222 5 0 2 555 3 4 3 2 444444444444444444 999999 1111111111 0 8888888888888888888888888 2 44444 1 8 6 11 999999999999 1 5 88888 1 77 22222 0 5 3 5 111 0 0 0 11111111111111111 0 7 88 111111 6 2 111 1 1 1 1 111 1 66 1 1 1 1 1 1 1 111 000000 1 88 77 88 66666666 111 1 1 5 4444444444444 111 1 88 1 1 1 1 1
lowQualScore : ... . . . ... .. .... . ............ ..... . . ................. . . . ... .. . ... ..... . . . ... . . . . .................. ...... .......... . ......................... . ..... . . . .. ............ . . ..... . .. ..... . . . . ... . . . ................. . . .. ...... . . ... . . . . ... . .. . . . . . . . ... ...... . .. .. .. ........ ... . . . ............. ... . .. . . . . .
lowQualScore : 555 7 0 2 888 33 4444 1 777777777777 11111 8 4 99999999999999999 7 3 0 888 88 1 111 55555 0 1 2 666 6 5 1 5 555555555555555555 444444 9999999999 2 0000000000000000000000000 2 22222 0 0 7 00 444444444444 4 7 11111 7 99 99999 1 7 6 0 888 0 2 0 22222222222222222 8 3 00 777777 7 0 555 0 0 0 0 555 0 55 0 0 0 0 0 0 0 555 000000 0 00 55 55 00000000 555 0 0 0 0000000000000 000 0 00 0 0 0 0 0
consensus : TACCAATGCGTGCGTGT-TTAAC-GCCAT---TTTCAACACATNNCAGG----TTATATA-----TGG----CATATC-----CAGTTTT-ATTGGTGGAGGAAGACCT------C--ANA---ATGAA-TCTGAGTAGAACCACCGTCCTTCCGCAAGTAACTGGCA---AAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACG-ACCTNAGCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGG---CA----CCT---TAGACCACTCGGCCACGGAGGACCC----T-----TAACNGTT----AG-TTGAAT----AAATTTNAA-CTT-TAG--GTAAG----TGAGTAAATA-T-TT-A--TTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
Reference ( family-478 ) : TACCAATGCGTGCGTGT-TTAAC-GCCAT---TTTCAACACATNNCAGG----TTATATA-----TGG----CATATC-----CAGTTTT-ATTGGTGGAGGAAGACCT------C--ANA---ATGAA-TCTGAGTAGAACCACCGTCCTTCCGCAAGTAACTGGCA---AAC-TTTCTCGCATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACG-ACCTNAGCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACGG---CA----CCT---TAGACCACTCGGCCACGGAGGACCC----T-----TAACNGTT----AG-TTGAAT----AAATTTNAA-CTT-TAG--GTAAG----TGGGTAAGTA-T-TT-A--TTATAGTGA--CATG----TGTACA-TGTAACATGATATACA-GATATAGAATTTTAAACAACAC-A-CC-GGCCCAA-TGG--C------T------CACCTATACAAATAAACAGTTATATCGTTTCAGTCGTGAAATTATGTTTGCAATTAAACATCATCAAAAAATAAATACATAGATATCACAAGGNAGTTNCANAACAGCANATTATTTACGNCTGCTTGNAAGGTCANTGNTNATNTATTGTACTTCTTCTTCTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCATANAAGCCTTNACAATATATTTAGNTACTTCTCTGGGAACGTTTGTGACCATATAAATGCACTTTTTTCAACANCGAATCCATACCATTAAACTATGCATGTATTTAAATCAGAATATTNCTCNTTGAAAACGTCTGCTTTAATATACCGTATATAATTGTAAAATGGTTTNCATCTTCANTCTGAAGTANATTACANAATGTANAANGTATT
gi|1 : TACCAATACA---ATGC-TTAAC-GACAT---TTTCAACATATTCCAGG----TTACATA-----TGG----CATATC-----CAGTTT-----GGTGGAGGAAGACTT------C--AGA----------CTGAGTAGAACAACCGTAATTCCGCAAGTAACTGA-A---AAC-ATTCTCACATAAAGCT-----TTTG-GAGCAAACG-GGACTCGAACCTACG-ACCT-AGCGGTGAGAG-GTAAGTG---AT-C-TT-G------AGACAC---TA----C-T---TAGGCCATTCGGCCACGGAGGACCC----T-----TAACA--T----AA-TTGGAT----AAATTTTAG-CTT-TAG--GTAAA----TAAGT---TA-T-TT-A--TTATAGAGA--CATG----TGTGCA-TGTGACATGGTATACA-GATATATAACTTTAATCAACAC-ACCC-GGCCTAA-TGA---------T------TACCGATACAAATAAACAGTTACATTATTTCAGT--TGAAATTATGCTTGCAATTAAACAGCATCAAAAAATAAATA-AGAGA---CACAAGAAAATTACAGAACAGTATATTATTTATGGCTGCTTGT-AGGTCAATGATAATATATTGTACTTCTTCTTCTCATA
gi|1 : TCTTCTCATAGAAGCCTTAACAATATATTTAGCTACTTTTCTGGGAATGTTTGTGAC-A-ATAAATACACTTTTTTCAACAACGAAT--ATACCATTAAACT--GCAT--------ATCAGAATATTGCTCATT-AAAACGTCTGCTTTAATATACTGTATATAATTGTAAAATGGTTTCCATCTTCATTTTGAAGTAGATTACAAAATGTACAAAGTATTggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagtcttctcatagaagccttaacaatatatttagctacttttctgggaatgtttgtgacaataaatacacttttttcaacaacgaatataccattaaactgcatatcagaatattgctcattaaaacgtctgctttaatatactgtatataattgtaaaatggtttccatcttcattttgaagtagattacaaaatgtacaaagtatttgctccaaagagctcacc
gi|10 : taccaatacaatgcttaacgacattttcaacatattccaggttacatatggcatatccagtttggtggaggaagacttcagactgagtagaacaaccgtaattccgcaagtaactgaaaacattctcacataaagcttttggagcaaacgggactcgaacctacgacctagcggtgagaggtaagtgatcttgagacactacttaggccattcggccacggaggacccttaacataattggataaattttagctttaggtaaataagttatttattatagagacatgtgtgcatgtgacatggtatacagatatataactttaatcaacacacccggcctaatgattaccgatacaaataaacagttacattatttcagttgaaattatgcttgcaattaaacagcatcaaaaaataaataagagacacaagaaaattacagaacagtatattatttatggctgcttgtaggtcaatgataatatattgtacttcttcttctcataggccggggccgattagctcagtcggttacgcgtctgactatcaatccaggggtcgtgtgtacgaattcccgcccgacaacagtcttcgtgatgattgatatacgacatgtgtctcattatcattcgtctctcactgttgattaaaaaaggtgaagttatcagttacttgaggagccggggtggttgagtattggttaaccattcaggatcccaggaaacagtggttcagctaactgatcgtctgttagccctcgatgccattcaaatgtcgctaaatagccaatctatcaagAT---TTTCAACATATGCCAGG----TTATATA-----TATATATCATATT-----TAGTTTT-ACTGGTGGAGGAAGACtgctccaaagagctcacc
gi|11 : agaagcaagcgaaggttagttattttgttaatttggatattttttatctaacattttattttaattgggtaaatcaGT-CCAAC-GCCAT---TTTCAACATTTAGTAGG----TTATATAAATTTTG------ATCTC-----CCTTTTT-ATTTGTCGGAAATGACCTTGGTTGC--ATATCCATGAC-TCTGAGTA
gi|12 : tttattcatttattgG----TAGTTAGGTACT-TT-A--TTATAGTGA--CATG----TG--CA-T-----ATGATATACATTATATAGAATTTTAAAGAACACAA-CC-AGCTAAA-TGG--T---------------CCTATAa
gi|13 : ggGAGAATGTTAGTG---AT-C-AA-G------AGAAGT---CT----CAT---TCGGCTATGCGGCCACGGAGGACCC----A-----AAACATAT----A--TTTAAT----AAAagtagaataccacatttcaatttc
gi|14 : CTCAAACCCACG-ACTTTAGCGGTGAGAG-ATA--T-------------------AAATAG---CA----TCT---TCAACCATTTAATCACAGAagatagcttttttaatatggcaaata
gi|15 : GAGAG-TTA----------C-TT-G------AGATGG---CA----CCA---AAAACTACTCAGCCATGGAAGATCC----T-----CACTTGTC----TA-TTAACT----AAatgacgttataatttgtttaaatcttca
gi|16 : tgatttaaactagcaGTGAGAG-GTAAGTG---GT-CGTT-G-------GAGGT---CA----GCCAAATATATCACTCGGCCTAGGAGGACCT----T-----T--CATTT----AG-TTGAAT----TAATTTAAA-CTT-taaca
gi|17 : AATA-TATT-A--TTATAGTGG--TATG----TGTACA-TGTAACATAATATACA-AATATAGAATTTTAAACACCAC-A-
gi|18 : atattatacgaaagaaatt-GGGCTCCAACCCACG-ACCTCAGCGATGTTAA-ATATATA---AT---TT-G------AGAT----------------------CAATCGGTCACAGAGGAGAC----T-----TAACAGTT----AA-TTG
gi|19 : aatT-----TTTA-GAGCGAACG-GTACTCAAACTTACG-ACCTTGGGGGT--GAG-GTATGTG---AT-C-TTCG------AGACAG---
gi|2 : tacaaaaGT-TTAAC-GCCAT---TTTCAACACATTTCAGA----TTACATA-----TTG----CATACCATGTTCAGTTTTGATTG-TGGAGAAAACCCT------C--AGA---ATGAA-TCTTGATAGAACCATCGTCCTTCCG---ATGA-TGGCA---AAC-TTTCTCACATAAAGTT-----TTTG-GAGCGAGCG-GGACTCGAACCTACG-ACCTTAGCGGTGAGAA-TTAAGTG---AT-C-TT-C------AGACGG---CA----CCT---TAGACCACTCAGTCtgctcaggttttt
gi|20 : tggttcatgaggccccacctaaattgccgattcatgtttcgatctaaacagtaaaactacatatttatatcaaatatcctatattatgaatattctgttcaataactgatcttgtattttgttttgtggtgtgtatgtttttttttaattttgtcgaccaaatacttaatcgtggcccgcgataaaagctatcgggctatgttaaaacattgatgacctttgaattaactcataatttctcataatacttttctaatggg-GAACTCTGACCTATG-ACCTAAGTTTTGAAAA-GTTAGTGGCAAT-C-----------AGAAAG---CAAAGTTCT---TAGACCAATCGTCCAAGGA
gi|21 : tAAGTAACTGGCT---AAA-TTTCTTGCAT----TTTATGCTTTG---GCCGGTATGGAATTGAGCCGACT-ACCTAAGTGGTGAGt
gi|22 : aTGT-TTAAT-GAAATAGTTTTTAGCACATTTTATG----TTATATA-----TGG----CATATC-----C--TTTT-TTT
gi|23 : aattatttttt-TAG--GTAAG----CAAGTAAATAGT-TT-A--TTATAGTGA--CATGACAGTGTACA-TGTAATATGATATACA-GAccattg
gi|24 : gAGAACAATTGTCCTTCTGCAAGTAACTAGCA---AAT-TTTT---CATAA
gi|3 : cGT-TAAAC-GTCAT---TTTCAACACATTTCAGG----TTATATA-----TGG----CATATC-----CCGTTTT-ATTGGTAGAGGAAGACTT------C--ATA---ATGAAATCTGAGTAGAACCATTGTCCTCCTGAAAGTAACTAGCA---AAC-TTTCTCACATACCATT-----TTTG-GACAGTGTG-GTACTCGAACCTATG-ACCTAAATAGTGAGAG-TTTAGTG---AT-C-TT-G------AGATGG---CA----CCT---TAGACCACTCGGCCAAGGAGAACCC------------ACTGTT----TGATTG--T----TAATTACAA-TAT-TAGCAGGAAGTTCCTGGG-AAGTG-C-TC-AATTTAT-GTAATTCAT-----TGTAGA-TAT--CATGATATATA-TATATA
gi|4 : tataaacatttaatctggttatcaaaagggcattttatagaaatattgtgctccaaaatgaaaaatttgtctttctaattatcaatatataccttttggaagaatcaagtgaacgttttatttgacttggttgtttgattttttttttgAAC-CTCAT---TTTTAACACATG--AAG----TTATTTA-----TAG----T---TT-----CAGGTTT-GCCGGTGGAAGAAGCTCT------C--AGA---ATGAA-TCTGAGCAGAACTGCCGTACTTCCGCATGCAACTGGCA---AAC-ATTCTTGCGTAAAATA-----TTTGTGAACGAGCT-TGGTTCCAACCAATG-G-CTCATCGGTGGAAA-GTAACTG---GTAT-TT-GGACGGAAGACAG---CG----CCG---TAGACCACTCAGTCACGGAGGATCCAACTT-----TGACTCTC----TG-TGCTAT-----AATCTCCA-CTTACAG--GTGAA----TG-----ATA-T-T--------TAG-GA--C-------TGTACATTGCAGC-TAGT-TACA-GACATATTATTTTta
gi|5 : agttattgatcataataaaataaattcttaatcagaatcgagtttcaacattattaacttgttttaaaaccataaattatgaggaaacatatactgatttacgtaaaagttaacacagtctcacaaaACA-GATATAGAATGTTAAACAACAC-C-CCTGACCCAA-TGGACC------TATAAGTCACCTATACAAATAACC-GTTCTATCGTTT--GTCGTGAACTTATGTTTGCTATTAAGCATTATCAAAAAGTAAAAACATAGATATTATAAGGTAGTTTTATAACAACAAATTA---ACGTCTGTTTGGAAAATCATTGTTTATTTATTGTATTTCTTTTTCTCATA
gi|5 : TTTTCTCATATAAGCCTTTACAATATATTTAAATATTTCTCTGGGAACGTTTATGACCATATAAATGTA------TCAACATC--ATCCATACCATTAAACTATACATGTATTTAAATCAAAA---TCCTCTTTGAAAATATCTGCTTTAA-A-ACC-------ATTGTAAAATG---TGCA--TTCAATCTAAAGTATATTACACAATGTAAAATGTATTtaagcctttacaatatatttaaatatttctctgggaacgtttatgaccatataaatgtatcaacatcatccataccattaaactatacatgtatttaaatcaaaatcctctttgaaaatatctgctttaaaaccattgtaaaatgtgcattcaatctaaagtatattacacaatgtaaaatgtatt
gi|6 : acagatatagaatgttaaacaacacccctgacccaatggacctataagtcacctatacaaataaccgttctatcgtttgtcgtgaacttatgtttgctattaagcattatcaaaaagtaaaaacatagatattataaggtagttttataacaacaaattaacgtctgtttggaaaatcattgtttatttattgtatttctTACCAATGCGTGCGTGCGTTAACCGCAAT---TCTCGATACATGATATGATGCTTAATTA------GG----CATATA-----AATATTT-ATTGGTGG----------------C---------TGAA-TTCGCGTAGAAGCACCATCGTTCCGTCAATAACTGGCAGCAAAC-AATCTCACATATA-TT-----TTAA-GACCGAGAT-GGGTTCGAACCTATG-ACCTCTGCGATGAGAT-ATAAGAG---GT-C-AT-T------AGACAATATCA----CCT---TAGATCGCTCGGCAACGTAG---CA----TAAATGTAA-TGTT----AG-TTGAATCCTAAAATTTGAATCTT-T
gi|7 : acgttttgacgtttttttaagtgtttttga-TTAAC-ATTTT---TTTCA-CATGGGACAGG----TCAAATA-----TGG----CACATC-----CAGTTTT-ATTGGTGGAGGAAAACCT------TCAACA---A--AA-TTTTAGTAGAACCACC--C------CAAGTAACCGACA---AACTTTTTTCACACAATGTT-----TATG-G-GCA----------TGAATCTACGTTCCTG----------G-GTAAGTG---GC-C-AT-T------AGACAT---CA----GCTA--TAG-----------ACAGAGGACCC-------------CTGTTTTACAA-CAGAAT----AAATtatacaaagtgttttattttaaacattcttgcaatctacattctgctcaggtttatatttaatttaatgtcat
gi|8 : AA--GTAAG----TGAGTAAATA-T-TTCA--TTATAGTGG--CATG----TGCACA-TGTAACATGATATACA-GATAAAGAACTTTAAAAAACAC-A-CA-GGCCCAACTGA--CATATATT------CACACATACAAATAAACAGTTATATCA-TTCA--CAT-AAATTATGTTTGAAATTGAACATCATCAAAAAATAAATATATAatgcagcaattgggaagcaacagaacatgggctatatccatttttatcaaaaatggccaactgaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GTATAGAAACCTCTGTATATGGTAGAACTACATGTAATGTCCTATGGCATGCTTTCTCACTTTCACTTTCTCTTAAAATAGAGTTGAGATTTGACCCACAAACTTGGCAGTGAGTTTTAGCTGATCTTCAGACATTACTTACCA
Unaligned ( gi|25 ): GACCATATGGACAGAAAATTGTTAACATTGACTTTAAGTAAG