lowQualScore : 111111111 33333333333333 111 33333333 1111 11111 222 3333333333333333 1 1 1111 111 22222 111 1 11 11 1111 99999999999999999999999999999
lowQualScore : 5 7 5 888888888 4 4 88888888888888 0 0 1 666 777 66 88 22222222 1111 3 0 44444 666 99 1 5 7777777777777777 99 8 3 99 3 9 9 2 6 6 3 7777 777 88888 777 0 3 6 33 33 0 6666 3 1 33333333333333333333333333333 0 3
lowQualScore : . . . ......... . . .............. . . . ... ... .. .. ........ .... . . ..... ... .. . . ................ .. . . .. . . . . . . . .... ... ..... ... . . . .. .. . .... . . ............................. . .
lowQualScore : 0 1 5 777777777 4 0 33333333333333 7 8 1 666 000 11 44 00000000 6666 4 4 33333 777 22 7 7 8888888888888888 88 0 2 88 3 0 3 7 6 7 5 6666 555 22222 555 2 5 0 88 88 8 0000 2 2 22222222222222222222222222222 7 7
consensus : AAGTTTATTA-GCAACTCGGCAA-A------ACATTT-GCCTTTGGCCGTT-TAC------A--ANAATTACAGAAATATGGCAAAGA---CAATA--ATA-TA-CA-----GTTAAAT--ACAATGCAA-----ATAAATA--TATG--ATGAAAGTAGAATAT-AAAT--T---AA---A----CAGTCAAAGTTTCAAGAGTAG-TTTTTCTAATGATNNATGCTTCTTTGATGAATTTTGAAAGTTTAAACAACAT-CTTTTT-ATT---TTA-A--GTT---GACATAAAAGTATTGNACGCGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGCATA---TCT----CAATATNAGAT
Reference ( gi|1 ) : AAGTTTATTA-GCAGCTTGGCAA-G------ACATTT-GCCTTTGGCCATT-TAC------A--ATAATTACAGAAATATGGAAAAGA---CAATA--ATA-CA-CA-----GTTAATT--ACAATACAA-----ATAAATA--AATG--ATGAAAGTAAAATAT-AAAT--T---AA---A----CAGTTGAAGTTTCAAGAGTAG-TTTTTCTAATGATTAATGCTTCTTTGGTGAAATTTGAAAGTTAAAACCACAT-CTTTGT-ATT---TTA-A--GTT---GACATAAAAGTATTGAATTTGT--GTACTGAAGGCCATGATATATGATCTAAATATGTTTCC-T----AATATCAGTTTAAGTTCT---ACAACATCAGAT
gi|6 : AAGTTGATTA-GCAACTCGGCAA-G------ACATTT-GCT-------------C------A--A-------AGCAATGTGACAAAGA---CAAGT--ATA-TA-CC-----GTTAAAT--ACAATGCAATGAACATAAATA--TATG--ATGAAAGTAAAATAT-AAAT--TCAGAA---A----CAGTCAAAGTTTCAAAAGTAGTTTTTTCTAATGATACATGCTTCTTTGATGAATTTT----GTTTGAACCAT-T-CTT
gi|3 : attcaAAGTTTATTA-ACAACTCGGCAA-A---------------------CCATTATAC----------TGATTACAGAACTATGACAAAGA---CAATA--ATA-TA-AA-----GTTAAAT--ATAATGCAA-----ATAAATA--TATG--ATGAAAGTAGAATAT-AAAT--T---AA---G---------GAAGTTT
gi|15 : gtttcaagtttcaAAATTTGTAA-GCATCTCTGCAA-A------ACATTTAGCTTTTGGCCGTT-TAC------AT-AGAA-TACAG-AATATatacacattctttttactttagttgacataaaaatattgaacgtgtgtactgaatgtcacgatatatgacaaaaacatatttctaccatgagcaatatcggat
gi|7 : aAAGTCCATTA-ACAACTAGGCAA-A------GCATTT-GTCTGCGGTCATT-TAC------A--A-------AGA-------AAAGAA---CAATA--ATA-TA-GACGAAGGCTAAAA--ACACTGAAA-----ATGAATAT-AATG--GTGAA
gi|11 : ttcaAGTTTGTTATATAAATCAGAAA-G------CTATTT-GCCTTTGGTCATT-TACAACAAAA--ATAATT-C--AAGTATGGTAAAGATATCAGAA--ATATTA-CA-----GTTGATT--ATATTAcgacgactgtatattaa
gi|9 : AGTATATCA-AAAATTTGACAAAG------AATTTT-GCCTTTTGACAGT-TAC------C--AAAATTACAGAAATATAGCAATGA---CA--A--ATG-TA-AAAAT--GTTAATTGAATAACACA
gi|13 : aaagtttaagTTTATTT-GAAACTCGTCAC-A------ACAATT-GCTTTTGGCAATT-TAC------A--AATATTACAGATATAC------GA---CAATATTATA-CA-C------GTTAATA--ACA--ACAA-----A
gi|14 : atTTATTA-GCAACTCTGCAA-ATTTGTAACATTT-GCCTTTGGCTTAT-TACAA----A--AAAAGCACAGGTATATGACAAAGA---TAATA--ATA-
gi|16 : aaatcAA-A------ATATTT-GCCTTTGGCCATT-TAC------AACATAA-TAC--AAGTATGGTTAAGA---CA
gi|4 : tgaacaTCGGCCGTT-TAC------A--ATGCCTACAGAAATATGTCAAATA---CAATA--ATA-TAACC-----GTTTAAT--ACAATGGAA-----ATAAATA--TATG--ATGAAAATAGAATAT-TAAT--C---AAGAAA----CAGTTCAAGTTTCAAGAGTAG-TTTTT-TAATGATTGGTGGTTCGTTCATGAATTTTGAAAGTTAAAACTAt
gi|12 : aatgttgcaatgtttcaaagtttatcagcaacAAAGA---CAATA--ATA-TA-CT-----GTTAAAT--ACAAAGCAA-----ATAGATA--TAAG--ATGAAAGTAGAATAT-AAAT--T---tttt
gi|2 : gactgttgctaaaaataggcatacataattgcCAA-----ATACATACAGATGTCATAAATGCAAAATGT-AAATAAT---AA---AGAAACAGGCAAAGATTCAGGGGTTG-TTTTATAAACAACACATACCTCTTTAATAGTGTTTGAAAGTTTAAACAATAT-CATGAT-GTTCAGTTGTA--GTT---GACATAAAAGAAATGCACACATAAATGTTGAAGGTCAC--------ATTT--ATATG-TACC-T----CATATCAGCATA---TCTGGGACAATATTAGAT
gi|10 : atttcagGAAAGAAGAATATCAAATAAG---AA---A----CAGTCAAAGTTTCAAGAGCAG-TTTTTCTAATGATTAACGCTTCTTTGGTGAATAACAAAAGTTTAAACAACAT-CTTTTT-Ataactgaatcagagcgatatacagtttgattaaataatttacatgaattgaatagttttctctttcagtt
gi|5 : GTAGACTAT-AAAT--T---GA---AAGA-CAGTCAATGTTGCAATGTTAG-TATTTCTAGTTATGAATGCCTTTTTGATGGATGTTGAAAGTATAAACAACAT-A------ATT---TTA-ATTGTTTATGAGATAAAAGTGTTATATATGT--GTACCGAAGGCCAATATACATGACATAAATATGTTTCCAT----AATCTTAATATACCTTTT---TCAACATAAGAT
gi|8 : TTCTTTGATGAA-TTT---AGTTTAAGGAACAT-CTTTTTTATT---TTT-A--ATT---GATATAAAAGTATTGAATGTGT--GTACTGAAGACAATGATATATGACCTTAATATGTTCCT-TTGGCAATAT
gi|3 : aaCACATTCTTTTT-ACT---TTA----GTT---GACATAAAAATATTGAACGTGT--GTACTGAATGTCACGATATATGACAAAAACATATTTC---------TACCA---TGAG--------CAATATCGGAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATTCAGATTTAATTACATTTTCGTTACATTATTTACATAAATGATTTTCTCTATCGAT
Unaligned ( gi|18 ): TTGTTGACATCATATTACTGAACTTGTGAACTGA
Alignments
lowQualScore : 111111 11111 22222222 11111 1111 222222 2222 111111 1111 11 11 1111 1 55555555555555
lowQualScore : 4 000000 3 7 555 55 3 77777 666 0 11 666 4 55555555 0 1 22222 5 1 0000 4 4 333333 5555 6 1 22 5 33 22 333333 6 6666 22 1 44 11 66 1 6 0 8 7777 0 0 66666666666666 1 1
lowQualScore : . ...... . . ... .. . ..... ... . .. ... . ........ . . ..... . . .... . . ...... .... . . .. . .. .. ...... . .... .. . .. .. .. . . . . .... . . .............. . .
lowQualScore : 0 555555 6 3 888 00 6 88888 444 4 77 444 0 33333333 8 7 55555 7 7 6666 4 4 111111 8888 7 0 00 0 66 99 777777 7 0000 00 0 22 00 44 0 0 8 0 0000 2 0 22222222222222 0 0
consensus : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--A-ANA-ANTACAG---AAATATGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC----TG---CAACATNAGAT
Reference ( family-472 ) : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--A-ANA-ATTACAG---AAATATGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCAAAGTTTCAAGAGTAG-TTTTTCTAATGATNNATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGNACGCGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC----T----CAATATNAGAT
gi|1 : AAGTTTATTA-GCAGCTTGGCAAG------AC-ATTT-GCCTTTGGCCATTTAC--A-ATA-ATTACAG---AAATATGGAAAAGA---CAATAATA-CA-CA-----GTTAATTACAATACAA-----ATAAATAA-ATGATG----AAA-GTAAAATAT-AAAT--T---AAA----CAGTTGAAGTTTCAAGAGTAG-TTTTTCTAATGATTAATGCTTCTTTGGTGAAA-TTTGAAAGTTAAAACCACAT-C----TTTGT-A--T-TTTAAGTTGACATAAAAGTATTGAATTTGT--GTACTGAAGGCCATGATATATGATCTAAATATGTTTCC-T----AATATCAGT-TTAAGTTC----TA---CAACATCAGAT
gi|10 : G----AAA-GAAGAATATCAAATAAG---AAA----CAGTCAAAGTTTCAAGAGCAG-TTTTTCTAATGATTAACGCTTCTTTGGTGAAT-AACAAAAGTTTAAACAACAT-C----TTTTT-A--
gi|11 : AGTTTGTTATATAAATCAG-AAA------GCTATTT-GCCTTTGGTCATTTAC--A-ACA-AAAATAATTCAAGTATGGTAAAGATATCAGAAATATTA-CA-----GTTGATTATA
gi|12 : ATTGCAAAGA---CAATAATA-TA-CT-----GTTAAATACAAAGCAA-----ATAGATAT-AAGATG----AAA-GTAGAATAT-AAAT--T---tta
gi|13 : gactgttgctaaaaataggcatacataTTTATTT-GAAACTCGTCACA------AC-AATT-GCTTTTGGCAATTTAC--A-AAT-ATTACAG---ATATAC------GA---CAATATTA-TA-CAC----GTTAATAACAA--CAA-----A
gi|14 : atTTATTA-GCAACTCTGCAAATTTGTAAC-ATTT-GCCTTTGGCTTATTACAAA-AAA-AGCACAG---GTATATGACAAAGA---TAATAATA-
gi|15 : aaatcAAATTTGTAA-GCATCTCTGCAAA------AC-ATTTAGCTTTTGGCCGTTTAC--ATAGA-A-TACAG----AATAT
gi|16 : aAAA------AT-ATTT-GCCTTTGGCCATTTAC--A-ACATAATAC-----AAGTATGGTTAAGA---CA
gi|2 : tgaacaGCAA-----ATACATAC-A-GATGTCATAAATGCAAAATGT-AAATAAT---AAAGAAACAGGCAAAGATTCAGGGGTTG-TTTTATAAACAACACATACCTCTTTAAT-AGTGTTTGAAAGTTTAAACAATAT-CATGATGTTC-A--G-TTGTAGTTGACATAAAAGAAATGCACACATAAATGTTGAAGGTCAC--------ATTT--ATATG-TACC-T----CATATCAGC-ATA---TC----TGGGACAATATTAGATt
gi|3 : atttcaAAGTTTATTA-ACAACTCGGCAAA------CC-ATT----------------AT--A-CTG-ATTACAG---AACTATGACAAAGA---CAATAATA-TA-AA-----GTTAAATATAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAtaactgaatcagagcgatatacagtttgattaaataatttacatgaattgaatagttttctctttcagtt
gi|3 : gtttcaagtttcaATAAAT-TAAGGAAGTTTATACA-CATTC----TTTTT-A--C-TTTA-GTTGACATAAAAATATTGAACGTGT--GTACTGAATGTCACGATATATGACAAAAACATATTT-C-T----ACCATGAGCAATA---TC----ggaagtttatacacattctttttactttagttgacataaaaatattgaacgtgtgtactgaatgtcacgatatatgacaaaaacatatttctaccatgagcaatatcggat
gi|4 : gtttcaagtttcaaagtttattaacaactcggcaaaccattatactgattacagaactatgacaaagacaataatataaagttaaatataatgcaaataaatatatgatgaaagtagaatAAGTTTATCA-GCAACTCGGC--------------------------CGTTTAC--A-ATG-CCTACAG---AAATATGTCAAATA---CAATAATA-TAACC-----GTTTAATACAATGGAA-----ATAAATAT-ATGATG----AAA-ATAGAATAT-TAAT--CAAGAAA----CAGTTCAAGTTTCAAGAGTAG-TTTTT-TAATGATTGGTGGTTCGTTCATGAAT-TTTGAAAGTTAAAACggat
gi|5 : aatgttgcaatgtttca-GTAGACTAT-AAAT--T---GAAAGA-CAGTCAATGTTGCAATGTTAG-TATTTCTAGTTATGAATGCCTTTTTGATGGAT-GTTGAAAGTATAAACAACAT-A----ATTTT-AATTGTTTA---TGAGATAAAAGTGTTATATATGT--GTACCGAAGGCCAATATACATGACATAAATATGTTTCCAT----AATCTTAAT-ATA---CCTTTTT----CAACATAAGATtatttt
gi|6 : AAGTTGATTA-GCAACTCGGCAAG------AC-ATTT-GCT------------C--A-A--------AG---CAATGTGACAAAGA---CAAGTATA-TA-CC-----GTTAAATACAATGCAATGAACATAAATAT-ATGATG----AAA-GTAAAATAT-AAAT--TCAGAAA----CAGTCAAAGTTTCAAAAGTAGTTTTTTCTAATGATACATGCTTCTTTGATGAAT-TTT----GTTTGAAC--CAT-T----CTT
gi|7 : attcaAAGTCCATTA-ACAACTAGGCAAA------GC-ATTT-GTCTGCGGTCATTTAC--A-A--------AG---AA-------AAGAA---CAATAATA-TA-GACGAAGGCTAAAAACACTGAAA-----ATGAATATAATGGTG----AAC-GACGACTGT-ATAT--T---AA
gi|8 : ttcaTTCTTTGATGAAT-TT----AGTTTAAGGAACAT-C----TTTTTTA--T-TTTTAATTGATATAAAAGTATTGAATGTGT--GTACTGAAGACAATGATATATGACCTTAATATGTTCCT-TTGGCAATAT
gi|9 : aaAGTATATCA-AAAATTTGACAAA------GA-ATTTTGCCTTTTGACAGTTAC--C-AAA-ATTACAG---AAATATAGCAATGA---CA--AATG-TA-AAAAT--GTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTCAGATTTAATTACATTTTCGTTACATTATTTACATAAATGATTTTCTCTATCGAT
Unaligned ( gi|18 ): TTGTTGACATCATATTACTGAACTTGTGAACTGA
Alignments
lowQualScore : 111111 11111 22222222 11111 1111 222222 2222 111111 1111 11 11 1111 1 3333333333333
lowQualScore : 4 000000 3 7 555 44 22222 44 555 3 11 666 4 55555555 0 1 22222 5 1 0000 4 4 333333 2222 2 6 1 22 5 33 22 333333 6 6666 22 1 1 11 66 1 6 0 8 7777 0 0 7777777777777 1
lowQualScore : . ...... . . ... .. ..... .. ... . .. ... . ........ . . ..... . . .... . . ...... .... . . . .. . .. .. ...... . .... .. . . .. .. . . . . .... . . ............. .
lowQualScore : 0 555555 6 3 888 66 11111 66 888 3 77 444 0 33333333 8 7 55555 7 7 6666 4 4 111111 1111 7 7 0 55 0 66 99 777777 7 0000 00 0 4 00 44 0 0 8 0 0000 2 0 8888888888888 0
consensus : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---TN---CAACATNAGAT
Reference ( family-472 ) : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---TG---CAACATNAGAT
gi|1 : AAGTTTATTA-GCAGCTTGGCAAG------AC-ATTT-GCCTTTGGCCATTTAC--AATA-ATTA--CAG---AAATA-TGGAAAAGA---CAATAATA-CA-CA-----GTTAATTACAATACAA-----ATAAATAA-ATGATG----AAA-GTAAAATAT-AAAT--T---AAA----CAGTTGAAGTTTCAAGAGTAG-TTTTTCTAATGATTAATGCTTCTTTGGTGAAA-TTTGAAAGTTAAAACCACAT-C----TTTGT-A--T-TTTAAGTTGACATAAAAGTATTGAATTTGT--GTACTGAAGGCCATGATATATGATCTAAATATGTTTCC-T----AATATCAGT-TTAAGTTC---TA---CAACATCAGAT
gi|10 : G----AAA-GAAGAATATCAAATAAG---AAA----CAGTCAAAGTTTCAAGAGCAG-TTTTTCTAATGATTAACGCTTCTTTGGTGAAT-AACAAAAGTTTAAACAACAT-C----TTTTT-A--
gi|11 : AGTTTGTTATATAAATCAG-AAA------GCTATTT-GCCTTTGGTCATTTAC--AACA-AAAA--TAATTCAAGTA-TGGTAAAGATATCAGAAATATTA-CA-----GTTGATTATA
gi|12 : TTGC--TAAA-AATAGGCAT---ACATAATTGCAAAGA---CAATAATA-TA-CT-----GTTAAATACAAAGCAA-----ATAGATAT-AAGATG----AAA-GTAGAATAT-AAAT--T---tta
gi|13 : gactgTTTATTT-GAAACTCGTCACA------AC-AATT-GCTTTTGGCAATTTAC--AAAT-ATTA--CAG---ATATA-C------GA---CAATATTA-TA-CAC----GTTAATAACAA--CAA-----A
gi|14 : atTTATTA-GCAACTCTGCAAATTTGTAAC-ATTT-GCCTTTGGCTTATTACAAAAAA-AGCA--CAG---GTATA-TGACAAAGA---TAATAATA-
gi|15 : aaatcAAATTTGTAA-GCATCTCTGCAAA------AC-ATTTAGCTTTTGGCCGTTTAC--ATAG-AATA--CAG----AATA-T
gi|16 : aAAA------AT-ATTT-GCCTTTGGCCATTTAC--AACATAATA--C-----AAGTA-TGGTTAAGA---CA
gi|2 : tgaacaGCAA-----ATACATAC-A-GATGTCATAAATGCAAAATGT-AAATAAT---AAAGAAACAGGCAAAGATTCAGGGGTTG-TTTTATAAACAACACATACCTCTTTAAT-AGTGTTTGAAAGTTTAAACAATAT-CATGATGTTC-A--G-TTGTAGTTGACATAAAAGAAATGCACACATAAATGTTGAAGGTCAC--------ATTT--ATATG-TACC-T----CATATCAGC-ATA---TC---TGGGACAATATTAGATt
gi|3 : atttcaAAGTTTATTA-ACAACTCGGCAAA------CC-A----------------TTAT--ACTG-ATTA--CAG---AACTA-TGACAAAGA---CAATAATA-TA-AA-----GTTAAATATAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAG---------GAAGTTTtaactgaatcagagcgatatacagtttgattaaataatttacatgaattgaatagttttctctttcagtt
gi|3 : gtttcaagtttcaATAAAT-TAAGGAAGTTTATACA-CATTC----TTTTT-A--C-TTTA-GTTGACATAAAAATATTGAACGTGT--GTACTGAATGTCACGATATATGACAAAAACATATTT-C-T----ACCATGAGCAATA---TC---atacacattctttttactttagttgacataaaaatattgaacgtgtgtactgaatgtcacgatatatgacaaaaacatatttctaccatgagcaatatcggat
gi|4 : gtttcaagtttcaaagtttattaacaactcggcaaaccattatactgattacagaactatgacaaagacaataatataaagttaaatataatgcaaataaatatatgatgaaagtagaatAAGTTTATCA-GCAACTCGGC--------------------------CGTTTAC--AATG-CCTA--CAG---AAATA-TGTCAAATA---CAATAATA-TAACC-----GTTTAATACAATGGAA-----ATAAATAT-ATGATG----AAA-ATAGAATAT-TAAT--CAAGAAA----CAGTTCAAGTTTCAAGAGTAG-TTTTT-TAATGATTGGTGGTTCGTTCATGAAT-TTTGAAAGTTAAAACggat
gi|5 : aatgttgcaatgtttca-GTAGACTAT-AAAT--T---GAAAGA-CAGTCAATGTTGCAATGTTAG-TATTTCTAGTTATGAATGCCTTTTTGATGGAT-GTTGAAAGTATAAACAACAT-A----ATTTT-AATTGTTTA---TGAGATAAAAGTGTTATATATGT--GTACCGAAGGCCAATATACATGACATAAATATGTTTCCAT----AATCTTAAT-ATA---CCTTTTT---CAACATAAGATtatttt
gi|6 : AAGTTGATTA-GCAACTCGGCAAG------AC-ATTT-GCT------------C--AA----------AG---CAATG-TGACAAAGA---CAAGTATA-TA-CC-----GTTAAATACAATGCAATGAACATAAATAT-ATGATG----AAA-GTAAAATAT-AAAT--TCAGAAA----CAGTCAAAGTTTCAAAAGTAGTTTTTTCTAATGATACATGCTTCTTTGATGAAT-TTT----GTTTGAAC--CAT-T----CTT
gi|7 : attcaAAGTCCATTA-ACAACTAGGCAAA------GC-ATTT-GTCTGCGGTCATTTAC--AA----------AG---AA--------AAGAA---CAATAATA-TA-GACGAAGGCTAAAAACACTGAAA-----ATGAATATAATGGTG----AAC-GACGACTGT-ATAT--T---AA
gi|8 : ttcaTTCTTTGATGAAT-TT----AGTTTAAGGAACAT-C----TTTTTTA--T-TTTTAATTGATATAAAAGTATTGAATGTGT--GTACTGAAGACAATGATATATGACCTTAATATGTTCCT-TTGGCAATAT
gi|9 : aaAGTATATCA-AAAATTTGACAAA------GA-ATTTTGCCTTTTGACAGTTAC--CAAA-ATTA--CAG---AAATA-TAGCAATGA---CA--AATG-TA-AAAAT--GTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTCAGATTTAATTACATTTTCGTTACATTATTTACATAAATGATTTTCTCTATCGAT
Unaligned ( gi|18 ): TTGTTGACATCATATTACTGAACTTGTGAACTGA
Alignments
lowQualScore : 111111 11111 22222222 11111 1111 222222 2222 111111 1111 11 11 1111 1 3333333333333
lowQualScore : 4 000000 3 7 555 44 22222 44 555 3 11 666 4 55555555 0 1 22222 5 1 0000 4 4 333333 2222 2 6 1 22 5 33 22 333333 6 6666 22 1 1 11 66 1 6 0 8 7777 0 0 5555555555555 1
lowQualScore : . ...... . . ... .. ..... .. ... . .. ... . ........ . . ..... . . .... . . ...... .... . . . .. . .. .. ...... . .... .. . . .. .. . . . . .... . . ............. .
lowQualScore : 0 555555 6 3 888 66 11111 66 888 3 77 444 0 33333333 8 7 55555 7 7 6666 4 4 111111 1111 7 7 0 55 0 66 99 777777 7 0000 00 0 4 00 44 0 0 8 0 0000 2 0 1111111111111 0
consensus : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
Reference ( family-472 ) : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---NCAACATNAGAT
gi|1 : AAGTTTATTA-GCAGCTTGGCAAG------AC-ATTT-GCCTTTGGCCATTTAC--AATA-ATTA--CAG---AAATA-TGGAAAAGA---CAATAATA-CA-CA-----GTTAATTACAATACAA-----ATAAATAA-ATGATG----AAA-GTAAAATAT-AAAT--T---AAA----CAGTTGAAGTTTCAAGAGTAG-TTTTTCTAATGATTAATGCTTCTTTGGTGAAA-TTTGAAAGTTAAAACCACAT-C----TTTGT-A--T-TTTAAGTTGACATAAAAGTATTGAATTTGT--GTACTGAAGGCCATGATATATGATCTAAATATGTTTCC-T----AATATCAGT-TTAAGTTC---T---ACAACATCAGAT
gi|10 : G----AAA-GAAGAATATCAAATAAG---AAA----CAGTCAAAGTTTCAAGAGCAG-TTTTTCTAATGATTAACGCTTCTTTGGTGAAT-AACAAAAGTTTAAACAACAT-C----TTTTT-A--
gi|11 : AGTTTGTTATATAAATCAG-AAA------GCTATTT-GCCTTTGGTCATTTAC--AACA-AAAA--TAATTCAAGTA-TGGTAAAGATATCAGAAATATTA-CA-----GTTGATTATA
gi|12 : TTGC--TAAA-AATAGGCAT---ACATAATTGCAAAGA---CAATAATA-TA-CT-----GTTAAATACAAAGCAA-----ATAGATAT-AAGATG----AAA-GTAGAATAT-AAAT--T---tta
gi|13 : gactgTTTATTT-GAAACTCGTCACA------AC-AATT-GCTTTTGGCAATTTAC--AAAT-ATTA--CAG---ATATA-C------GA---CAATATTA-TA-CAC----GTTAATAACAA--CAA-----A
gi|14 : atTTATTA-GCAACTCTGCAAATTTGTAAC-ATTT-GCCTTTGGCTTATTACAAAAAA-AGCA--CAG---GTATA-TGACAAAGA---TAATAATA-
gi|15 : aaatcAAATTTGTAA-GCATCTCTGCAAA------AC-ATTTAGCTTTTGGCCGTTTAC--ATAG-AATA--CAG----AATA-T
gi|16 : aAAA------AT-ATTT-GCCTTTGGCCATTTAC--AACATAATA--C-----AAGTA-TGGTTAAGA---CA
gi|2 : tgaacaGCAA-----ATACATAC-A-GATGTCATAAATGCAAAATGT-AAATAAT---AAAGAAACAGGCAAAGATTCAGGGGTTG-TTTTATAAACAACACATACCTCTTTAAT-AGTGTTTGAAAGTTTAAACAATAT-CATGATGTTC-A--G-TTGTAGTTGACATAAAAGAAATGCACACATAAATGTTGAAGGTCAC--------ATTT--ATATG-TACC-T----CATATCAGC-ATA---TC---TGGGACAATATTAGATt
gi|3 : atttcaAAGTTTATTA-ACAACTCGGCAAA------CC-A----------------TTAT--ACTG-ATTA--CAG---AACTA-TGACAAAGA---CAATAATA-TA-AA-----GTTAAATATAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAG---------GAAGTTTtaactgaatcagagcgatatacagtttgattaaataatttacatgaattgaatagttttctctttcagtt
gi|3 : gtttcaagtttcaATAAAT-TAAGGAAGTTTATACA-CATTC----TTTTT-A--C-TTTA-GTTGACATAAAAATATTGAACGTGT--GTACTGAATGTCACGATATATGACAAAAACATATTT-C-T----ACCATGAGCAATA---TC---atacacattctttttactttagttgacataaaaatattgaacgtgtgtactgaatgtcacgatatatgacaaaaacatatttctaccatgagcaatatcggat
gi|4 : gtttcaagtttcaaagtttattaacaactcggcaaaccattatactgattacagaactatgacaaagacaataatataaagttaaatataatgcaaataaatatatgatgaaagtagaatAAGTTTATCA-GCAACTCGGC--------------------------CGTTTAC--AATG-CCTA--CAG---AAATA-TGTCAAATA---CAATAATA-TAACC-----GTTTAATACAATGGAA-----ATAAATAT-ATGATG----AAA-ATAGAATAT-TAAT--CAAGAAA----CAGTTCAAGTTTCAAGAGTAG-TTTTT-TAATGATTGGTGGTTCGTTCATGAAT-TTTGAAAGTTAAAACggat
gi|5 : aatgttgcaatgtttca-GTAGACTAT-AAAT--T---GAAAGA-CAGTCAATGTTGCAATGTTAG-TATTTCTAGTTATGAATGCCTTTTTGATGGAT-GTTGAAAGTATAAACAACAT-A----ATTTT-AATTGTTTA---TGAGATAAAAGTGTTATATATGT--GTACCGAAGGCCAATATACATGACATAAATATGTTTCCAT----AATCTTAAT-ATA---CCTTTT---TCAACATAAGATtatttt
gi|6 : AAGTTGATTA-GCAACTCGGCAAG------AC-ATTT-GCT------------C--AA----------AG---CAATG-TGACAAAGA---CAAGTATA-TA-CC-----GTTAAATACAATGCAATGAACATAAATAT-ATGATG----AAA-GTAAAATAT-AAAT--TCAGAAA----CAGTCAAAGTTTCAAAAGTAGTTTTTTCTAATGATACATGCTTCTTTGATGAAT-TTT----GTTTGAAC--CAT-T----CTT
gi|7 : attcaAAGTCCATTA-ACAACTAGGCAAA------GC-ATTT-GTCTGCGGTCATTTAC--AA----------AG---AA--------AAGAA---CAATAATA-TA-GACGAAGGCTAAAAACACTGAAA-----ATGAATATAATGGTG----AAC-GACGACTGT-ATAT--T---AA
gi|8 : ttcaTTCTTTGATGAAT-TT----AGTTTAAGGAACAT-C----TTTTTTA--T-TTTTAATTGATATAAAAGTATTGAATGTGT--GTACTGAAGACAATGATATATGACCTTAATATGTTCCT-TTGGCAATAT
gi|9 : aaAGTATATCA-AAAATTTGACAAA------GA-ATTTTGCCTTTTGACAGTTAC--CAAA-ATTA--CAG---AAATA-TAGCAATGA---CA--AATG-TA-AAAAT--GTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTCAGATTTAATTACATTTTCGTTACATTATTTACATAAATGATTTTCTCTATCGAT
Unaligned ( gi|18 ): TTGTTGACATCATATTACTGAACTTGTGAACTGA
Alignments
lowQualScore : 111111 11111 22222222 11111 1111 222222 2222 111111 1111 11 11 1111 1 333333333333
lowQualScore : 4 000000 3 7 555 44 22222 44 555 3 11 666 4 55555555 0 1 22222 5 1 0000 4 4 333333 2222 2 6 1 22 5 33 22 333333 6 6666 22 1 1 11 66 1 6 0 8 7777 0 0 444444444444 1
lowQualScore : . ...... . . ... .. ..... .. ... . .. ... . ........ . . ..... . . .... . . ...... .... . . . .. . .. .. ...... . .... .. . . .. .. . . . . .... . . ............ .
lowQualScore : 0 555555 6 3 888 66 11111 66 888 3 77 444 0 33333333 8 7 55555 7 7 6666 4 4 111111 1111 7 7 0 55 0 66 99 777777 7 0000 00 0 4 00 44 0 0 8 0 0000 2 0 111111111111 0
consensus : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
Reference ( family-472 ) : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
gi|1 : AAGTTTATTA-GCAGCTTGGCAAG------AC-ATTT-GCCTTTGGCCATTTAC--AATA-ATTA--CAG---AAATA-TGGAAAAGA---CAATAATA-CA-CA-----GTTAATTACAATACAA-----ATAAATAA-ATGATG----AAA-GTAAAATAT-AAAT--T---AAA----CAGTTGAAGTTTCAAGAGTAG-TTTTTCTAATGATTAATGCTTCTTTGGTGAAA-TTTGAAAGTTAAAACCACAT-C----TTTGT-A--T-TTTAAGTTGACATAAAAGTATTGAATTTGT--GTACTGAAGGCCATGATATATGATCTAAATATGTTTCC-T----AATATCAGT-TTAAGTTC---T---ACAACATCAGAT
gi|10 : G----AAA-GAAGAATATCAAATAAG---AAA----CAGTCAAAGTTTCAAGAGCAG-TTTTTCTAATGATTAACGCTTCTTTGGTGAAT-AACAAAAGTTTAAACAACAT-C----TTTTT-A--
gi|11 : AGTTTGTTATATAAATCAG-AAA------GCTATTT-GCCTTTGGTCATTTAC--AACA-AAAA--TAATTCAAGTA-TGGTAAAGATATCAGAAATATTA-CA-----GTTGATTATA
gi|12 : TTGC--TAAA-AATAGGCAT---ACATAATTGCAAAGA---CAATAATA-TA-CT-----GTTAAATACAAAGCAA-----ATAGATAT-AAGATG----AAA-GTAGAATAT-AAAT--T---tta
gi|13 : gactgTTTATTT-GAAACTCGTCACA------AC-AATT-GCTTTTGGCAATTTAC--AAAT-ATTA--CAG---ATATA-C------GA---CAATATTA-TA-CAC----GTTAATAACAA--CAA-----A
gi|14 : atTTATTA-GCAACTCTGCAAATTTGTAAC-ATTT-GCCTTTGGCTTATTACAAAAAA-AGCA--CAG---GTATA-TGACAAAGA---TAATAATA-
gi|15 : aaatcAAATTTGTAA-GCATCTCTGCAAA------AC-ATTTAGCTTTTGGCCGTTTAC--ATAG-AATA--CAG----AATA-T
gi|16 : aAAA------AT-ATTT-GCCTTTGGCCATTTAC--AACATAATA--C-----AAGTA-TGGTTAAGA---CA
gi|2 : tgaacaGCAA-----ATACATAC-A-GATGTCATAAATGCAAAATGT-AAATAAT---AAAGAAACAGGCAAAGATTCAGGGGTTG-TTTTATAAACAACACATACCTCTTTAAT-AGTGTTTGAAAGTTTAAACAATAT-CATGATGTTC-A--G-TTGTAGTTGACATAAAAGAAATGCACACATAAATGTTGAAGGTCAC--------ATTT--ATATG-TACC-T----CATATCAGC-ATA---TC---TGGGACAATATTAGATt
gi|3 : atttcaAAGTTTATTA-ACAACTCGGCAAA------CC-A----------------TTAT--ACTG-ATTA--CAG---AACTA-TGACAAAGA---CAATAATA-TA-AA-----GTTAAATATAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAG---------GAAGTTTtaactgaatcagagcgatatacagtttgattaaataatttacatgaattgaatagttttctctttcagtt
gi|3 : gtttcaagtttcaATAAAT-TAAGGAAGTTTATACA-CATTC----TTTTT-A--C-TTTA-GTTGACATAAAAATATTGAACGTGT--GTACTGAATGTCACGATATATGACAAAAACATATTT-C-T----ACCATGAGCAATA---TC---atacacattctttttactttagttgacataaaaatattgaacgtgtgtactgaatgtcacgatatatgacaaaaacatatttctaccatgagcaatatcggat
gi|4 : gtttcaagtttcaaagtttattaacaactcggcaaaccattatactgattacagaactatgacaaagacaataatataaagttaaatataatgcaaataaatatatgatgaaagtagaatAAGTTTATCA-GCAACTCGGC--------------------------CGTTTAC--AATG-CCTA--CAG---AAATA-TGTCAAATA---CAATAATA-TAACC-----GTTTAATACAATGGAA-----ATAAATAT-ATGATG----AAA-ATAGAATAT-TAAT--CAAGAAA----CAGTTCAAGTTTCAAGAGTAG-TTTTT-TAATGATTGGTGGTTCGTTCATGAAT-TTTGAAAGTTAAAACggat
gi|5 : aatgttgcaatgtttca-GTAGACTAT-AAAT--T---GAAAGA-CAGTCAATGTTGCAATGTTAG-TATTTCTAGTTATGAATGCCTTTTTGATGGAT-GTTGAAAGTATAAACAACAT-A----ATTTT-AATTGTTTA---TGAGATAAAAGTGTTATATATGT--GTACCGAAGGCCAATATACATGACATAAATATGTTTCCAT----AATCTTAAT-ATA---CCTTTT---TCAACATAAGATtatttt
gi|6 : AAGTTGATTA-GCAACTCGGCAAG------AC-ATTT-GCT------------C--AA----------AG---CAATG-TGACAAAGA---CAAGTATA-TA-CC-----GTTAAATACAATGCAATGAACATAAATAT-ATGATG----AAA-GTAAAATAT-AAAT--TCAGAAA----CAGTCAAAGTTTCAAAAGTAGTTTTTTCTAATGATACATGCTTCTTTGATGAAT-TTT----GTTTGAAC--CAT-T----CTT
gi|7 : attcaAAGTCCATTA-ACAACTAGGCAAA------GC-ATTT-GTCTGCGGTCATTTAC--AA----------AG---AA--------AAGAA---CAATAATA-TA-GACGAAGGCTAAAAACACTGAAA-----ATGAATATAATGGTG----AAC-GACGACTGT-ATAT--T---AA
gi|8 : ttcaTTCTTTGATGAAT-TT----AGTTTAAGGAACAT-C----TTTTTTA--T-TTTTAATTGATATAAAAGTATTGAATGTGT--GTACTGAAGACAATGATATATGACCTTAATATGTTCCT-TTGGCAATAT
gi|9 : aaAGTATATCA-AAAATTTGACAAA------GA-ATTTTGCCTTTTGACAGTTAC--CAAA-ATTA--CAG---AAATA-TAGCAATGA---CA--AATG-TA-AAAAT--GTTAA
blockSeqs : T TTTGTA T A TCA AA CATAA GG TTC A GG TAT T GACGAAG A TGAAC A A TCAT T C CAAG GAAA A T C TA G CA AA CATGA T ATTG TA C A AA CG T A A TGGC A TCTGGG T
blockSeqs : . . . T CAA . CAAA . . . TG . . AAAAT T . . T . . . TCAG AGA A . T AC . TG AA TC . G TA A G . AT A A . . . CCTTTT A
blockSeqs : . . . . CTT . AAAA . . . GA . . CAC T . . T . . . AAG . G . C TG . AG AA C . C A T A . TG A T . . .
blockSeqs : . . . . CCG . ATAT . . . GG . . ACC T . . T . . . AAT . C . C GA . TG AA A . T A A G . C C . . .
blockSeqs : . . . . CCA . AAAG . . . GA . . CA T . . T . . . T . A . . AC . TG A T .
blockSeqs : . . . . TCA . AGAA . . . GT . . CT . . . . . . . T . A . T . C
blockSeqs : . . . . ACA . TGAT . . . GA . . AA . . . . T . .
blockSeqs : . . . . CG . TGCC . . . AG . . CC . . T
blockSeqs : . . . . . . AAAT . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
finalCons : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTCAGATTTAATTACATTTTCGTTACATTATTTACATAAATGATTTTCTCTATCGAT
Unaligned ( gi|18 ): TTGTTGACATCATATTACTGAACTTGTGAACTGA
Alignments
lowQualScore : 111111 11111 22222222 11111 1111 222222 2222 111111 1111 11 11 1111 1 333333333333
lowQualScore : 4 000000 3 7 555 44 22222 44 555 3 11 666 4 55555555 0 1 22222 5 1 0000 4 4 333333 2222 2 6 1 22 5 33 22 333333 6 6666 22 1 1 11 66 1 6 0 8 7777 0 0 444444444444 1
lowQualScore : . ...... . . ... .. ..... .. ... . .. ... . ........ . . ..... . . .... . . ...... .... . . . .. . .. .. ...... . .... .. . . .. .. . . . . .... . . ............ .
lowQualScore : 0 555555 6 3 888 66 11111 66 888 3 77 444 0 33333333 8 7 55555 7 7 6666 4 4 111111 1111 7 7 0 55 0 66 99 777777 7 0000 00 0 4 00 44 0 0 8 0 0000 2 0 111111111111 0
consensus : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
Reference ( family-472 ) : AAGTTTATTA-GCAACTCGGCAAA------AC-ATTT-GCCTTTGGCCGTTTAC--AANA-ANTA--CAG---AAATA-TGGCAAAGA---CAATAATA-TA-CA-----GTTAAATACAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAA----CAGTCGAAGTTTCAAGAGTAG-TTTTTCTAATGATNAATGCTTCTTTGATGAAT-TTTGAAAGTTTAAACAACAT-C----TTTTT-A--T-TTTAAGTTGACATAAAAGTATTGAACGTGT--GTACTGAAGGCCACGATATATGACNTAAATATGTTTCC-T----AATATCAGC-ATA---TC---T---ACAACATNAGAT
gi|1 : AAGTTTATTA-GCAGCTTGGCAAG------AC-ATTT-GCCTTTGGCCATTTAC--AATA-ATTA--CAG---AAATA-TGGAAAAGA---CAATAATA-CA-CA-----GTTAATTACAATACAA-----ATAAATAA-ATGATG----AAA-GTAAAATAT-AAAT--T---AAA----CAGTTGAAGTTTCAAGAGTAG-TTTTTCTAATGATTAATGCTTCTTTGGTGAAA-TTTGAAAGTTAAAACCACAT-C----TTTGT-A--T-TTTAAGTTGACATAAAAGTATTGAATTTGT--GTACTGAAGGCCATGATATATGATCTAAATATGTTTCC-T----AATATCAGT-TTAAGTTC---T---ACAACATCAGAT
gi|10 : G----AAA-GAAGAATATCAAATAAG---AAA----CAGTCAAAGTTTCAAGAGCAG-TTTTTCTAATGATTAACGCTTCTTTGGTGAAT-AACAAAAGTTTAAACAACAT-C----TTTTT-A--
gi|11 : AGTTTGTTATATAAATCAG-AAA------GCTATTT-GCCTTTGGTCATTTAC--AACA-AAAA--TAATTCAAGTA-TGGTAAAGATATCAGAAATATTA-CA-----GTTGATTATA
gi|12 : TTGC--TAAA-AATAGGCAT---ACATAATTGCAAAGA---CAATAATA-TA-CT-----GTTAAATACAAAGCAA-----ATAGATAT-AAGATG----AAA-GTAGAATAT-AAAT--T---tta
gi|13 : gactgTTTATTT-GAAACTCGTCACA------AC-AATT-GCTTTTGGCAATTTAC--AAAT-ATTA--CAG---ATATA-C------GA---CAATATTA-TA-CAC----GTTAATAACAA--CAA-----A
gi|14 : atTTATTA-GCAACTCTGCAAATTTGTAAC-ATTT-GCCTTTGGCTTATTACAAAAAA-AGCA--CAG---GTATA-TGACAAAGA---TAATAATA-
gi|15 : aaatcAAATTTGTAA-GCATCTCTGCAAA------AC-ATTTAGCTTTTGGCCGTTTAC--ATAG-AATA--CAG----AATA-T
gi|16 : aAAA------AT-ATTT-GCCTTTGGCCATTTAC--AACATAATA--C-----AAGTA-TGGTTAAGA---CA
gi|2 : tgaacaGCAA-----ATACATAC-A-GATGTCATAAATGCAAAATGT-AAATAAT---AAAGAAACAGGCAAAGATTCAGGGGTTG-TTTTATAAACAACACATACCTCTTTAAT-AGTGTTTGAAAGTTTAAACAATAT-CATGATGTTC-A--G-TTGTAGTTGACATAAAAGAAATGCACACATAAATGTTGAAGGTCAC--------ATTT--ATATG-TACC-T----CATATCAGC-ATA---TC---TGGGACAATATTAGATt
gi|3 : atttcaAAGTTTATTA-ACAACTCGGCAAA------CC-A----------------TTAT--ACTG-ATTA--CAG---AACTA-TGACAAAGA---CAATAATA-TA-AA-----GTTAAATATAATGCAA-----ATAAATAT-ATGATG----AAA-GTAGAATAT-AAAT--T---AAG---------GAAGTTTtaactgaatcagagcgatatacagtttgattaaataatttacatgaattgaatagttttctctttcagtt
gi|3 : gtttcaagtttcaATAAAT-TAAGGAAGTTTATACA-CATTC----TTTTT-A--C-TTTA-GTTGACATAAAAATATTGAACGTGT--GTACTGAATGTCACGATATATGACAAAAACATATTT-C-T----ACCATGAGCAATA---TC---atacacattctttttactttagttgacataaaaatattgaacgtgtgtactgaatgtcacgatatatgacaaaaacatatttctaccatgagcaatatcggat
gi|4 : gtttcaagtttcaaagtttattaacaactcggcaaaccattatactgattacagaactatgacaaagacaataatataaagttaaatataatgcaaataaatatatgatgaaagtagaatAAGTTTATCA-GCAACTCGGC--------------------------CGTTTAC--AATG-CCTA--CAG---AAATA-TGTCAAATA---CAATAATA-TAACC-----GTTTAATACAATGGAA-----ATAAATAT-ATGATG----AAA-ATAGAATAT-TAAT--CAAGAAA----CAGTTCAAGTTTCAAGAGTAG-TTTTT-TAATGATTGGTGGTTCGTTCATGAAT-TTTGAAAGTTAAAACggat
gi|5 : aatgttgcaatgtttca-GTAGACTAT-AAAT--T---GAAAGA-CAGTCAATGTTGCAATGTTAG-TATTTCTAGTTATGAATGCCTTTTTGATGGAT-GTTGAAAGTATAAACAACAT-A----ATTTT-AATTGTTTA---TGAGATAAAAGTGTTATATATGT--GTACCGAAGGCCAATATACATGACATAAATATGTTTCCAT----AATCTTAAT-ATA---CCTTTT---TCAACATAAGATtatttt
gi|6 : AAGTTGATTA-GCAACTCGGCAAG------AC-ATTT-GCT------------C--AA----------AG---CAATG-TGACAAAGA---CAAGTATA-TA-CC-----GTTAAATACAATGCAATGAACATAAATAT-ATGATG----AAA-GTAAAATAT-AAAT--TCAGAAA----CAGTCAAAGTTTCAAAAGTAGTTTTTTCTAATGATACATGCTTCTTTGATGAAT-TTT----GTTTGAAC--CAT-T----CTT
gi|7 : attcaAAGTCCATTA-ACAACTAGGCAAA------GC-ATTT-GTCTGCGGTCATTTAC--AA----------AG---AA--------AAGAA---CAATAATA-TA-GACGAAGGCTAAAAACACTGAAA-----ATGAATATAATGGTG----AAC-GACGACTGT-ATAT--T---AA
gi|8 : ttcaTTCTTTGATGAAT-TT----AGTTTAAGGAACAT-C----TTTTTTA--T-TTTTAATTGATATAAAAGTATTGAATGTGT--GTACTGAAGACAATGATATATGACCTTAATATGTTCCT-TTGGCAATAT
gi|9 : aaAGTATATCA-AAAATTTGACAAA------GA-ATTTTGCCTTTTGACAGTTAC--CAAA-ATTA--CAG---AAATA-TAGCAATGA---CA--AATG-TA-AAAAT--GTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTCAGATTTAATTACATTTTCGTTACATTATTTACATAAATGATTTTCTCTATCGAT
Unaligned ( gi|18 ): TTGTTGACATCATATTACTGAACTTGTGAACTGA