lowQualScore : 55 22 11 3333333333333333333 22222 11 111 888888888888888888888888888888888888888888888888888888888888888888888888 33333 3333333333 1111111 2222 11
lowQualScore : 55 2 00 9 77 0000000000000000000 3 2 11111 33 111 555 6666 111111111111111111111111111111111111111111111111111111111111111111111111 2 0 55555 6 666 3 7777 3333333333 3 6666666 4444 2 1 3 4 2222 55 777 777 00
lowQualScore : .. . .. . .. ................... . . ..... .. ... ... .... ........................................................................ . . ..... . ... . .... .......... . ....... .... . . . . .... .. ... ... ..
lowQualScore : 00 5 22 2 99 4444444444444444444 1 9 00000 66 555 444 5555 888888888888888888888888888888888888888888888888888888888888888888888888 0 1 66666 8 444 6 7777 6666666666 1 3333333 7777 3 3 3 0 0000 55 000 000 22
consensus : NNNNNNAAATTAAAAATGCAGTTGACACTCGTTATCTCAAA-GTCCAGGGG---A--CC-----AG-GAAA-ATACTTTGAGATA----ACCA-GTAG---TT---TG----A----G--AAA----CA----GTGTGA-TTTCTATA-------GTA----A---A---AC--AA--GAAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTG-ACAT-AA--CAG-AG-------TTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGTGATTTC--TA---TA---GTAAAACA-AATGAAGGG
Reference ( gi|1 ) : AGCCTAAAAT--AAAATGCAGTTGCCACTTGTTATCTCAAT-GTCCAAGAA---A--CA-----AG-GAAA-ATACTTTGAGATT----ACCA-CTAG---TT---TG----A----G----A----CA----GTGTGA-TTCCTA-A-------GTA----A---A---A---AA--GAAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTG-GC-T-AC--CAG-AG-------TTTGAGAT----AACCAGTAG-TTT-GAGGTTAATAGTGTGATTTC--TA---TA---GTAAAACA-GATAAAGGG
gi|2 : AAATTAAAAATG--------ACTCATTATCTCAAA-GTCCAGGGA---C--CAGGACCAG-GTAA-ATGCTTTGAGACA----A--A-C-AA---TT---TG----A----GCTAAA----CA----CAGTGG-TTTCTATA-------GTC----AGCCA---A---AAT-GAAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTA-AC---A---CAG-AG-------TTTGGGAT----AA
gi|3 : ttagtatATACAGTTG--ACT------CCCAAA-GTCCAGAGG---A--CC-----AG-GACA-ATCATTTGAGACA----ACCA-GTAG---TT---TG----A----GAGAAA----CC----GTGAGA-TTTCTATT-------GTA----A---A---AC--AAATGAAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTG-ACAT-AG--CAG-AG-------Tagaaagtcaactgtattcctat
gi|12 : CAGTTGACACTCGAAATCTCGAA-GTCCAGGAA---A------------------TACTTTGAGATA----ACGAGTTAC---TTAAATT----A----A----A----TA----ATGTGATTTCCAA-A-------GTA----A---A---ACATGA--CAAG-GGAC--TAATTTTTAC-cgactttatttacaatgtcacatggtttcttgactggttggtg
gi|5 : CAGTTGATTCATGTAATCTCAAA-ATC-AAGAGGTCA--CC-----AG-AAAATATACTTTGAGATA----ACCA-ATAG---GT---TG----A----G----A----TAAACTATGTGC-TT--TT-A-------GTATTACA---ACACA---AAT-GAAG-TGGCTATAATTTTTACTTTTGAGA--------TGTA-A------------------CAG-AG-------TTTGAGAT----AAtt
gi|10 : agtaaAGTTGACTCTCATTCTATCAAA-GTC-------------A-----AG-AAAA-ATAGGTTGCGCTA----ACCA-ATAG---TT---TG----AAATTG----A----CA----ATTTGA-AT------------------------------------GAAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTG-AC---ACAACAA-AG-------TTTCGGAT----AAtgcaatccgactgta
gi|17 : tctgtatTTGACACTCGATATCTCAAT-ATCCAGGGG---A--CC-----AGAAAAA-ATACTTTGAGATA----ACCA-GTAtgtgagttgattggt
gi|6 : aTTATCTCAAA-GTCTTGTGG---G--CC-----AA-GAAA-ATACATTGAGATT----AATA-GTAGT--TT---TG----A----GATAAA----TA----GTTTGG-TTTCTA-AAGT----ATA----A---C---A---AA--TGAG-ATATC------TTTAC-TTTGAGATATCC---TGTA-GT----TTG-ATAT-AA--CAG-AG-------CTTGAGAT----AACGAG-AG-T
gi|9 : ttcattctccTTACCTCAA--GTA-AAGAA---AGGCC-----AG-GAAA-ATACGTTGAGATA----ACCA-GTAG---TT---TAAAATA----A----A----CA----GTGAGA-TTCCTT-A-------GTA----A---A---A---CA-----------TATAAAGTTT------GAGATATCT---T-TATGT----TTG-ACAT-AA--CAT-AG-------TTTGAGAT----AAcgattgtac
gi|11 : ggttcatcTCATCTCAAA-ATGCAAAGG---A--CC-----AG-GAAA-ATACTTTGAGATA----ACCA-GTAG-----------------------------------GTGTAA-T--------------------------------------------ATCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTG-ACAT-AA--CAG-AG-------TTTGAGATTTAGAATAAGTAG-Tagagagtcgactgtagtat
gi|7 : tgttcacaatcacaTTATCTTAAA-GTCTAGATG---A--CC-----AG-AGAA-ATACTTCCAGAT--------A-CTAGTTATT---TG----A----A----A----TA----AACTGA-TTTCTATA-------GTG----A---A---AC--AAATGAAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTG-ACAT-AA--CAG-AG-------TTGGATAT----Acgcgttttaaataat
gi|4 : TATCTCAAA-GTCTTGGAG---A--CA-----AA-GAAA-ATAAATTGAGATA----AATA-GTAGT--TT---TG----A----GATAAA----TA----GTGTGG-TTTCTA-ACGTACATGTA----A---A---AC--AAATGAAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAAC-T-AA--CAG-AG-------TTT--GAT----AACGAG-AG-TTT-gtgagactgtacatacct
gi|15 : TCTCATTAGTCCAGAGG---A--CC-----AG-GGGT-ATACTTTGAAATA----ACCG-GTAG---CT---TA----A----A----A----actgtacttttatatattttgca
gi|8 : tatagtacaactggc---A--CC-----AG-GTAA-AAACTTTGAACTTTCAAACCA-GAAG---TT---TG----A----A----ATAAACA----GTGTGA-TTTATATA-------GTA----A---A---ACA-AAT-AAAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTG-ACAT-AA--GTG-AG-------TTTGAGAT----AAC
gi|16 : gggaggA-GTAGTTTGAGATA----ACCA-GTAG---TT---TG----A----GATAAA----CA----GTGTGA-ATTTTATA-------GTA----A---A---A---Agaaagccaactgcaatgtaat
gi|7 : attacgTATCT---TAAA-GT----CTA-GA-TGAC--CAG-AGAAATAC-TTCCAGAT----A-CTAGTTA-TTT-GA----AATAAACTGATTTC--TA---TA---GTGAAACA-AATGAAGGGtaaatga
gi|5 : tG-GT-C-AC--CAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATAAACTATGTGCTTTTAGTA---TT---ACAACACA-AATGAAGagtaatttttactttgatatatcctcatgttgtaaacttgacataacagagttggatatagtgagactgtacatacct
gi|16 : agtaacagttgattcatgtaatctcaaaatcaaga-T-AC--GAGTAG-------TTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGTGAATTT--TA---TA---GTAAAA----ATAAAtggctataatttttacttttgagatgtaacagagtttgagataatgcaatccgactgta
gi|3 : at-------TTTGAGAC----AACCAGTAG-TTT-GAGAGAAACCGTGAGATTTC--TA---TT---GTAAAACA-AATGAAGGGtga
gi|12 : atacagttgactcccaaagtccagaggaccaggacaatca-------TTTGAGAT----AACGAGTTA-CTT-AAATTAAATAATGTGATTTC--CA---AA---GTAAAACATGACAAGGGaccatatattttactttgagatatcccatagtttgacatagcagagtcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|4 : cagttgacactcgaaatctcgaagtccaggaaatacTTGAGAT----AAATAGTAG-TTTTGAGATAAATAGTGTGGTTTC--TAACGTACATGTAAAACA-AATGAAGactaatttttactt
gi|6 : tatctcaaagtcttggagacaaagaaaataaaTTGAGAT----TAATAGTAGTTTT-GAGATAAATAGTTTGGTTTC--TA---AA---GTATAACA-AATGAcacaccataatttttactcctgtagtttgaactaacagagtttgataacgagagtttactgtacttttatatattttgca
gi|9 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacaTTGAGAT----AACCAGTAG-TTT-AAAATAAACAGTGAGATTCC--T----TA---GTAAAACA-TATAAAGgatatctttactttgagatatcctgtagtttgatataacagagcttgagataacgagagtcgattgtac
gi|8 : ggttcatcttacctcaagtaaagaaaggccaggaaaatacg----AACCAGAAG-TTT-GAAATAAACAGTGTGATTTA--TA---TA---GTAAAACA-AATAAAGGGtttgagatatctttatgtttgacataacatagtttgagataaagagagtcgactgtagtat
gi|14 : gggaggaccaggtaaaaactttgaactttcaATTTC--TA---TA---GTAAAACA-AATAAAGAGgccataatttttattttgagatatcccgtagtgtgacataagtgagtttgagataacgaaagccaactgcaatgtaat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AATAAACATAGTAATGTACTAAAACAGATTAAGGCACTATAACTTTTTTTTTGAGATATCAGGTAATTTGATATAATAGTGTTTGACATAACAAGAATCTACTGTAA
Alignments
lowQualScore : 1111111 33333 333333333 111111111111 11111 1 1 1
lowQualScore : 7 6 555 2 1 2222222 33 2 2 6666 3 3 66666 3 0 33 66666666 777777777 2 0 7 2 555 0 2 6666 1 6666 555555555555 44444 7 3 3 6 3
lowQualScore : . . ... . . ....... .. . . .... . . ..... . . .. ........ ......... . . . . ... . . .... . .... ............ ..... . . . . .
lowQualScore : 3 3 444 7 4 1111111 99 9 9 1111 1 1 44444 3 1 99 44444444 888888888 9 1 7 9 000 1 9 1111 5 5555 888888888888 99999 3 7 3 0 3
consensus : NNNNNNAAATTAAAAATGCAGTTGACNCTCG--TTATCTCAA-AGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAG-TAT-AAC-AGTGTGATTTC--TA---TA---GTAAAACA--AA--G--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTTGAGAT----A------------AC----NAGTAGTTTGAGATAAANAGTGT-GA-TTCTATAGT-AAAACAGATGAAGGG
Reference ( family-4630 ) : NNNNNNAAATTAAAAATGCAGTTGACACTCG--TTATCTCAA-AGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAG--A--AAC-AGTGTGATTTC--TA---TA---GTAAAACA--A---G--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTTGAGAT----A------------AC----CAGTAGTTTGAGATAAACAGTGT-GATTTCTATAGT-AAAACAAATGAAGGG
gi|1 : AAAT--AAAATGCAGTTGCCACTTG--TTATCTCAA-TGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAG--A----C-AGTGTGATTCC--TA----A---GTAAAA-A--A---G--AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTTGAGAT----A------------AC----CAGTAGTTTGAGGTTAATAGTGT-GATTTCTATAGT-AAAACAGATAAAGGG
gi|10 : agcctaAGTTGACTCTCA--TTCTATCAA-AGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAA--ATTGAC-AATTTGA-------A---T------------------G--AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTTCGGAT----A------------A
gi|11 : tctgtatGTTCACAATCACATCATCTCAA-AATGCAAAG-----G--ACCAG-GAA----------------------AATAC-TTT-GAG--AT-AACCAGTAGG-------TG---TA---ATA---------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTTGAGATTTAGA------------AT----AAGTAGTtgtgagttgattggt
gi|12 : tCAGTTGACACTCG--AAATCTCGA-AGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT-AAATTA--AAT-AATGTGATTTC--CA---AA---GTAAAACATGA---C--AAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : --TG---TA---CTAAAACA--G---ATTAAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTTGACAT----A------------AC----AAG
gi|14 : aataaacatagtaaATTTC--TA---TA---GTAAAACA--AAT-A--AAG-AGAT--TAATGTTTAC-TTTGAGATATCA---CGTA-AC----TTaatctactgtaa
gi|15 : TCTCATTAGTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAA--A--tccagagataatgatagtcaactgtatctaatatttcc
gi|16 : tatagtacaactggcAGTTTGAGAT----A------------AC----CAGTAGTTTGAGATAAACAGTGT-GAATTTTATAGTAAAAATAAATGA
gi|17 : attacgagtTTGACACTCG--ATATCTCAA-TATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAATTAAAAATG--------ACTCA--TTATCTCAA-AGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCTA--AAC-ACAGTGGTTTC--TA---TA---GTCAGCCA--AAATG--AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTTGGGAT----A------------A
gi|2 : ttagtatTAGGAATACAGTTGACTTTCT--TTATCCCAA-ACTCagaaagtcaactgtattcctat
gi|3 : ttagtataaattaaaaatgactcattatctcaaagtccagggaccaggaccaggtaaatgctttgagacaaacaatttgagctaaacacagtggtttctatagtcagccaaaatgaatggacaatcgtttttattctgagacatcctgtagtttaacacaATACAGTTGAC----------TCCCAA-AGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAG--AGAAAC-CGTGAGATTTC--TA---TT---GTAAAACA--AAT-G--AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGTt
gi|4 : TATCTCAA-AGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAGATA--AAT-AGTGTGGTTTC--TAACGTACATGTAAAACA--AAT-G--AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT--GAT----A------------AC----GAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|5 : CAGTTGATTCATG--TAATCTCAA-AATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATA--AAC-TATGTGCTTTTAGTA---TT---ACAACACA--AAT-G--AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTTGAGAT----A------------Aactgtacttttatatattttgca
gi|6 : agtaaCTCC--TTATCTCAA-AGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAG--ATAAAT-AGTTTGGTTTC--TA---AA---GTATAACA--A------ATG-AGAT----ATCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTTGAGAT----A------------AC----GAG-AGTtgcaatccgactgta
gi|7 : ttcatt--TTATCTTAA-AGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT----A-CTAGTTA-TTT-GAA--ATAAAC-----TGATTTC--TA---TA---GTGAAACA--AAT-G--AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTGGATAT----A------------cgattgtac
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAA--ATAAAC-AGTGTGATTTA--TA---TA---GTAAAACA--A---ATAAAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTTGAGAT----A------------AC----gtgagactgtacatacct
gi|8 : ggTGCAGTTGGCTTTCG--TTATCTCAA-ACTCgaaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagt--TTACCTCAA--GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAAATA--AAC-AGTGAGATTCC--T----TA---GTAAAACA-----------------TATAA-----AG-TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTTGAGAT----A------------Aatgtaat
gi|9 : ggttcatcTGAGAT-TCC---T-TA-GT----AAAACATA-TAAAGTTTGAGAT----ATCTTTATGTTTGACATAACA-TAGTTTGAGATAAAGAGAGTCGA---CTGTAGT-agagagtcgactgtagtat
Alignments
lowQualScore : 1111111 55555 2222 1 333 2
lowQualScore : 7 4 1 1 2222222 33 2 2 6666 3 3 11111 3 0 33 66666666 22 5555 999999 2 555 3 6666 2 7777 1 5 4 1 111 0
lowQualScore : . . . . ....... .. . . .... . . ..... . . .. ........ .. .... ...... . ... . .... . .... . . . . ... .
lowQualScore : 3 0 7 4 1111111 99 9 9 1111 1 1 33333 3 1 99 44444444 99 1111 666666 9 444 1 5555 4 1111 0 5 0 0 000 0
consensus : NNNNNNAAATTAAAAATACAGTTGACTCTCGTTATCTCAAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAG--AT-AAC-AGTGTGATTTC--TA---TA---GTAAAACA-AAT-G-AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTTGAGAT----AACGAGTAGTTTGAGGTNAACAGTGTGAATTTCTATAGTAAAAACAGATGAAGGG
Reference ( family-4630 ) : NNNNNNAAATTAAAAATGCAGTTGACNCTCGTTATCTCAAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAG-TAT-AAC-AGTGTGATTTC--TA---TA---GTAAAACA-AA--G-AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTTGAGAT----AACNAGTAGTTTGAGATAAANAGTGTG-A-TTCTATAGT-AAAACAGATGAAGGG
gi|1 : AAAT--AAAATGCAGTTGCCACTTGTTATCTCAATGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAG------AC-AGTGTGATTCC--TA----A---GTAAA--A-AA--G-AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTTGAGAT----AACCAGTAGTTTGAGGTTAATAGTGTG-ATTTCTATAGT-AAAACAGATAAAGGG
gi|10 : agcctaAGTTGACTCTCATTCTATCAAAGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAA-ATT-GAC-AATTTGA-------A---T-----------------G-AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTTCGGAT----AA
gi|11 : tctgtatCATCATCTCAAAATGCAAAG-----G--ACCAG-GAAA-A---------------------TAC-TTT-GAG--AT-AACCAGTAGG-------TG---TA---ATA-------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTTGAGATTTAGAATAAGTAGTtgtgagttgattggt
gi|12 : tgttcacaatcaCAGTTGACACTCGAAATCTCGAAGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT-AAA-TTA-AAT-AATGTGATTTC--CA---AA---GTAAAACATGA--C-AAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : --TG---TA---CTAAAACA-GA--TTAAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTTGACAT----AACAAG
gi|14 : aataaacatagtaaATTTC--TA---TA---GTAAAACA-AAT-A-AAG-AGAT--TAATGTTTAC-TTTGAGATATCA---CGTA-AC----TTaatctactgtaa
gi|15 : AGTACAACTGGCTCTCATTA-------GTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAtccagagataatgatagtcaactgtatctaatatttcc
gi|16 : tatAGTTTGAGAT----AACCAGTAGTTTGAGATAAACAGTGTGAA-TTTTATAGTAAAAATAAATGAaa
gi|17 : attacgagtTTGACACTCGATATCTCAATATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAATTAAAAATG--------ACTCATTATCTCAAAGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCTA--AAC-ACAGTGGTTTC--TA---TA---GTCAGCCA-AAATG-AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTTGGGAT----AA
gi|2 : ttagtatTAGGAATACAGTTGACTTTCTTTATCCCAAACTCagaaagtcaactgtattcctat
gi|3 : ttagtataaattaaaaatgactcattatctcaaagtccagggaccaggaccaggtaaatgctttgagacaaacaatttgagctaaacacagtggtttctatagtcagccaaaatgaatggacaatcgtttttattctgagacatcctgtagtttaacacaATACAGTTGAC--------TCCCAAAGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAG-AGA-AAC-CGTGAGATTTC--TA---TT---GTAAAACA-AAT-G-AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGTt
gi|4 : TATCTCAAAGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAG--ATAAAT-AGTGTGGTTTC--TAACGTACATGTAAAACA-AAT-G-AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT--GAT----AACGAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|5 : CAGTTGATTCATGTAATCTCAAAATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAG--ATAAAC-TATGTGCTTTTAGTA---TT---ACAACACA-AAT-G-AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTTGAGAT----AAactgtacttttatatattttgca
gi|6 : agtaaTTCATTCTCCTTATCTCAAAGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAGATA--AAT-AGTTTGGTTTC--TA---AA---GTATAACA-AA--T-GAG------ATA-TCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTTGAGAT----AACGAG-AGTtgcaatccgactgta
gi|6 : TACAATCGACTCTCGTTATCTCAAcgattgtac
gi|7 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacattgagattaatagtagttttgagataaatagtttggtttctaaagtataacaaatgagatatctttactttgagatatcctgtagtttgatataacagagcTTATCTTAAAGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT-----ACTAGTTA-TTT-GAA--ATAAAC-----TGATTTC--TA---TA---GTGAAACA-AAT-G-AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTGGATAT----AGTGAGc
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAAATA--AAC-AGTGTGATTTA--TA---TA---GTAAAACA-AAT-A-AAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTTGAGAT----AACGAactgtacatacct
gi|8 : ggTGCAGTTGGCTTTCGTTATCTCAAACTCaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagtTTACCTCAA-GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAA--ATAAAC-AGTGAGATTCC--T----TA---GTAAAACA---------------TATAA-----AG-TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTTGAGAT----AAAGAG-AGTatgtaat
gi|9 : ggttcatcTACAGTCGACTCTCTTTATCTCAAAcgactgtagtat
Alignments
lowQualScore : 3333 1111111 11111 1 22 1
lowQualScore : 0000 33 2 333 1 2222222 33 2 2 6666 3 3 99999 333 0 33 66666666 2 33 444 8 2 555 3 6666 2 555 6666 5 1 7 22 6 5
lowQualScore : .... .. . ... . ....... .. . . .... . . ..... ... . .. ........ . .. ... . . ... . .... . ... .... . . . .. . .
lowQualScore : 7777 77 0 999 4 1111111 99 9 9 1111 1 1 88888 666 1 99 44444444 9 99 111 4 9 444 1 5555 7 444 5555 4 0 3 00 7 5
consensus : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGAT--AAAC-AGTGTGATTTC--TA---TA---GTAAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTNAACAGTGTG-ATTTCTATAGTAAAAACAGATGAAGGG
Reference ( family-4630 ) : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGAT--AA-C-AGTGTGATTTC--TA---TA---GTAAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTNAACAGTGTGAATTTCTATAGTAAAAACAGATGAAGGG
gi|1 : AAAT-----AAAATGCAGTTGCC--ACTTGTTATCTC---AATGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAG-----A-C-AGTGTGATTCC--TA----A---GTAAAA-AA---G--AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTT---GAGAT----AACCAGTAGTTTGAGGTTAATAGTGTG-ATTTCTATAGT-AAAACAGATAAAGGG
gi|10 : agcctaTATAGTTGAC--TCTCATTCTATC---AAAGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAAATT-GA-C-A-----ATTT--------------------GAA-TG--AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTT---CGGAT----AATGTG-AGTT
gi|11 : tctgGTTCACAATCACATCATCTC---AAAATGCAAAG-----G--ACCAG-GAAA-ATACTT----------------------T-GAGAT--AA-CCAGTAGG-------TG---TA---ATA-------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGATTTAGAATAAGTAGTgattggt
gi|12 : tCAGTTGAC--ACTCGAAATCTC---GAAGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT--AAATTAAA-T-AATGTGATTTC--CA---AA---GTAAAAC--A-TGACAAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : --TG---TA---CTAAAACAGA-TT--AAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTT---GACAT----AACAAG
gi|14 : aataaacatagtaaATTTC--TA---TA---GTAAAACAAA-TA--AAG-AGAT--TAATGTTTAC-TTTGAGATATC------------------ACGTAAC----TTTCCAGAGAT----AATGA-TAGTaatctactgtaa
gi|14 : AGATACAGTTGAC--TATCATTATCTCTGGAAAGTcaactgtatctaatatttcc
gi|15 : atttctatagtaaaacaaataaagagattaatgtttactttgagatatcacgtaAGTACAACTGGC--TCTCATTA----------GTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAAAaatatttcc
gi|16 : tatAGTTT---GAGAT----AACCAGTAGTTTGAGATAAACAGTGTGAATTT-TATAGTAAAAATAAATGA
gi|17 : attacgagtTTGAC--ACTCGATATCTC---AATATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAAT---TAAAAAT------GAC--TC--ATTATCTC---AAAGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCT--AAAC-ACAGTGGTTTC--TA---TA---GTCAGCCAAAATG--AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTT---GGGAT----AAAGA--------AAGTCAAC--TGT--ATTCCTAT
gi|3 : ttagtatATACAGTTGAC--TCCC-----------AAAGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAGAG--AAAC-CGTGAGATTTC--TA---TT---GTAAAACAAA-TG--AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGT
gi|4 : TATCTC---AAAGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAGATA-AA-T-AGTGTGGTTTC--TAACGTACATGTAAAACAAA-TG--AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT-----GAT----AACGAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|4 : AAATATATAAAAGTACAGTAAAC--TCTCGTTA--TC---AAACTCactgtacttttatatattttgca
gi|5 : tatctcaaagtcttggagacaaagaaaataaattgagataaatagtagttttgagataaatagtgtggtttctaacgtacatgtaaaacaaatgaagcacaccataatttttactcctgtagtttgaactaacaACAGTTGAT--TCATGTAATCTC---AAAATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATA-AA-C-TATGTGCTTTTAGTA---TT---ACAACACAAA-TG--AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTT---GAGAT----AATGtgca
gi|6 : agtaTTCAT--TCTCCTTATCTC---AAAGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAGAT--AAAT-AGTTTGGTTTC--TA---AA---GTATAACAAA-TG--A----GAT----ATCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTT---GAGAT----AACGAG-AGTcaatccgactgta
gi|6 : TACAATCGAC--TCTCGTTATCTC---AAcgattgtac
gi|7 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacattgagattaatagtagttttgagataaatagtttggtttctaaagtataacaaatgagatatctttactttgagatatcctgtagtttgatataacagagcTTATCTT---AAAGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT----A-CTAGTTA-TTT-GAAAT--AAAC-----TGATTTC--TA---TA---GTGAAACAAA-TG--AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTG---GATAT----AGTGAGc
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAAAT--AAAC-AGTGTGATTTA--TA---TA---GTAAAACAAA-TA--AAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTT---GAGAT----AACGAactgtacatacct
gi|8 : ggTGCAGTTGGC--TTTCGTTATCTC---AAACTCaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagtTTACCTC---AA-GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAAATA-AA-C-AGTGAGATTCC--T----TA---GTAAAACATA-TA--AAG------------------TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTT---GAGAT----AAAGAG-AGTatgtaat
gi|9 : ggttcatcTACAGTCGAC--TCTCTTTATCTC---AAAcgactgtagtat
Alignments
lowQualScore : 3333 1111111 1 11 1 4
lowQualScore : 0000 33 2 333 1 2222222 33 2 2 5555 2 2 0 2 33 444 444 2 2 33 444 8 2 555 3 6666 2 555 7777 0 8 2 1 88 5 0 6
lowQualScore : .... .. . ... . ....... .. . . .... . . . . .. ... ... . . .. ... . . ... . .... . ... .... . . . . .. . . .
lowQualScore : 7777 77 0 999 4 1111111 99 9 7 3333 7 7 5 7 44 444 444 5 7 77 111 4 9 444 1 5555 7 888 1111 8 5 5 0 00 0 0 0
consensus : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGT-AAAACAGATAAAGGG
Reference ( family-4630 ) : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTNAACAGTGTGATTTCTATAGTAAAAACAGATGAAGGG
gi|1 : AAAT-----AAAATGCAGTTGCC--ACTTGTTATCTC---AATGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAG----ACAGTGT-GATTCC--TA----A---GT-AAAA-AA---G--AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTT---GAGAT----AACCAGTAGTTTGAGGTTAATAGTGTGATTTCTATAGT-AAAACAGATAAAGGG
gi|10 : agcctaTATAGTTGAC--TCTCATTCTATC---AAAGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAAATTGACA------ATTT---------------------GAA-TG--AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTT---CGGAT----AATGTG-AGTT
gi|11 : tctgGTTCACAATCACATCATCTC---AAAATGCAAAG-----G--ACCAG-GAAA-ATACTTT-----------------------GAGATAACCAGTAG-G-------TG---TA---AT-A-------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGATTTAGAATAAGTAGTgattggt
gi|12 : tCAGTTGAC--ACTCGAAATCTC---GAAGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT-AAATTAAATAATGT-GATTTC--CA---AA---GT-AAAAC--A-TGACAAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : ATAAACATAGT-AAT------G---TA---CT-AAAACAGA-TT--AAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTT---GACAT----AACAAG
gi|14 : aATTTC--TA---TA---GT-AAAACAAA-TA--AAG-AGAT--TAATGTTTAC-TTTGAGATATC------------------ACGTAAC----TTTCCAGAGAT----AATGA-TAGTaatctactgtaa
gi|14 : AGATACAGTTGAC--TATCATTATCTCTGGAAAGTcaactgtatctaatatttcc
gi|15 : atttctatagtaaaacaaataaagagattaatgtttactttgagatatcacgtaAGTACAACTGGC--TCTCATTA----------GTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAAAaatatttcc
gi|16 : tatA-GTAGTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GAATTT--TA---TA---GTAAAAATAAA-TG--A
gi|17 : attacgTTGAC--ACTCGATATCTC---AATATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAAT---TAAAAAT------GAC--TC--ATTATCTC---AAAGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCTAAACACAGT-GGTTTC--TA---TA---GT-CAGCCAAAATG--AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTT---GGGAT----AAAGA--------AAGTCAAC--TGT-ATTCCTAT
gi|3 : ttagtatATACAGTTGAC--TCCC-----------AAAGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAGAGAAACCGTGA-GATTTC--TA---TT---GT-AAAACAAA-TG--AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGT
gi|4 : TATCTC---AAAGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAGATAAATAGTGT-GGTTTC--TAACGTACATGT-AAAACAAA-TG--AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT-----GAT----AACGAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|4 : AAATATATAAAAGTACAGTAAAC--TCTCGTTA--TC---AAACTCactgtacttttatatattttgca
gi|5 : tatctcaaagtcttggagacaaagaaaataaattgagataaatagtagttttgagataaatagtgtggtttctaacgtacatgtaaaacaaatgaagcacaccataatttttactcctgtagtttgaactaacaACAGTTGAT--TCATGTAATCTC---AAAATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATAAACTATGT-GCTTTTAGTA---TT---AC-AACACAAA-TG--AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTT---GAGAT----AATGtgca
gi|6 : agtaTTCAT--TCTCCTTATCTC---AAAGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAGATAAATAGTTT-GGTTTC--TA---AA---GT-ATAACAAA-TG--A----GAT----ATCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTT---GAGAT----AACGAG-AGTcaatccgactgta
gi|6 : TACAATCGAC--TCTCGTTATCTC---AAcgattgtac
gi|7 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacattgagattaatagtagttttgagataaatagtttggtttctaaagtataacaaatgagatatctttactttgagatatcctgtagtttgatataacagagcTTATCTT---AAAGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT----A-CTAGTTA-TTT-GAAATAAAC----T-GATTTC--TA---TA---GT-GAAACAAA-TG--AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTG---GATAT----AGTGAGc
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAAATAAACAGTGT-GATTTA--TA---TA---GT-AAAACAAA-TA--AAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTT---GAGAT----AACGAactgtacatacct
gi|8 : ggTGCAGTTGGC--TTTCGTTATCTC---AAACTCaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagtTTACCTC---AA-GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAAATAAACAGTGA-GATTCC--T----TA---GT-AAAACATA-TA--AAG------------------TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTT---GAGAT----AAAGAG-AGTatgtaat
gi|9 : ggttcatcTTTGACAT----AAC--ATAG-TTT-GAGATAAAGAGAGTCGA---C--TG---TA---GT-Acgactgtagtat
gi|9 : ggttcatcttacctcaagtaaagaaaggccaggaaaatacgttgagataaccagtagtttaaaataaacagtgagattccttagtaaaacatataaagtttgagatatctttatgTACAGTCGAC--TCTCTTTATCTC---AAAt
Alignments
lowQualScore : 3333 1111111 1 11 1
lowQualScore : 0000 33 2 333 1 2222222 33 2 2 5555 2 2 0 2 33 444 444 2 2 33 444 8 2 555 3 6666 2 555 7777 0 8 2 88 5
lowQualScore : .... .. . ... . ....... .. . . .... . . . . .. ... ... . . .. ... . . ... . .... . ... .... . . . .. .
lowQualScore : 7777 77 0 999 4 1111111 99 9 7 3333 7 7 5 7 44 444 444 5 7 77 111 4 9 444 1 5555 7 888 1111 8 5 5 00 0
consensus : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
Reference ( family-4630 ) : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
gi|1 : AAAT-----AAAATGCAGTTGCC--ACTTGTTATCTC---AATGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAGA----CAGTGT-GATTCC--TA----A---GT-AAAA--AA--G--AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTT---GAGAT----AACCAGTAGTTTGAGGTTAATAGTGTGATTTCTATAGTAAAACAGATAAAGGG
gi|10 : agcctaTATAGTTGAC--TCTCATTCTATC---AAAGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAAATTGACA------ATTT---------------------GAA-TG--AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTT---CGGAT----AATGTG-AGTT
gi|11 : tctgGTTCACAATCACATCATCTC---AAAATGCAAAG-----G--ACCAG-GAAA-ATACTTT-----------------------GAGATAACCAGTAG-G-------TG---TA---AT-A-------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGATTTAGAATAAGTAGTgattggt
gi|12 : tCAGTTGAC--ACTCGAAATCTC---GAAGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT-AAATTAAATAATGT-GATTTC--CA---AA---GT-AAAAC--A-TGACAAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : ATAAACATAGT-AAT------G---TA---CT-AAAACAGA-TT--AAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTT---GACAT----AACAAG
gi|14 : aATTTC--TA---TA---GT-AAAACAAA-TA--AAG-AGAT--TAATGTTTAC-TTTGAGATATC------------------ACGTAAC----TTTCCAGAGAT----AATGA-TAGTaatctactgtaa
gi|14 : AGATACAGTTGAC--TATCATTATCTCTGGAAAGTcaactgtatctaatatttcc
gi|15 : atttctatagtaaaacaaataaagagattaatgtttactttgagatatcacgtaAGTACAACTGGC--TCTCATTA----------GTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAAAaatatttcc
gi|16 : tatA-GTAGTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GAATTT--TA---TA---GTAAAAATAAA-TG--A
gi|17 : attacgTTGAC--ACTCGATATCTC---AATATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAAT---TAAAAAT------GAC--TC--ATTATCTC---AAAGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCTAAACACAGT-GGTTTC--TA---TA---GT-CAGCCAAAATG--AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTT---GGGAT----AAAGA--------AAGTCAAC--TGT-ATTCCTAT
gi|3 : ttagtatATACAGTTGAC--TCCC-----------AAAGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAGAGAAACCGTGA-GATTTC--TA---TT---GT-AAAACAAA-TG--AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGT
gi|4 : TATCTC---AAAGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAGATAAATAGTGT-GGTTTC--TAACGTACATGT-AAAACAAA-TG--AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT-----GAT----AACGAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|4 : AAATATATAAAAGTACAGTAAAC--TCTCGTTA--TC---AAACTCactgtacttttatatattttgca
gi|5 : tatctcaaagtcttggagacaaagaaaataaattgagataaatagtagttttgagataaatagtgtggtttctaacgtacatgtaaaacaaatgaagcacaccataatttttactcctgtagtttgaactaacaACAGTTGAT--TCATGTAATCTC---AAAATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATAAACTATGT-GCTTTTAGTA---TT---AC-AACACAAA-TG--AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTT---GAGAT----AATGtgca
gi|6 : agtaTTCAT--TCTCCTTATCTC---AAAGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAGATAAATAGTTT-GGTTTC--TA---AA---GT-ATAACAAA-TG--A----GAT----ATCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTT---GAGAT----AACGAG-AGTcaatccgactgta
gi|6 : TACAATCGAC--TCTCGTTATCTC---AAcgattgtac
gi|7 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacattgagattaatagtagttttgagataaatagtttggtttctaaagtataacaaatgagatatctttactttgagatatcctgtagtttgatataacagagcTTATCTT---AAAGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT----A-CTAGTTA-TTT-GAAATAAAC----T-GATTTC--TA---TA---GT-GAAACAAA-TG--AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTG---GATAT----AGTGAGc
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAAATAAACAGTGT-GATTTA--TA---TA---GT-AAAACAAA-TA--AAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTT---GAGAT----AACGAactgtacatacct
gi|8 : ggTGCAGTTGGC--TTTCGTTATCTC---AAACTCaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagtTTACCTC---AA-GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAAATAAACAGTGA-GATTCC--T----TA---GT-AAAACATA-TA--AAG------------------TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTT---GAGAT----AAAGAG-AGTatgtaat
gi|9 : ggttcatcTTTGACAT----AAC--ATAG-TTT-GAGATAAAGAGAGTCGA---C--TG---TA---GT-Acgactgtagtat
gi|9 : ggttcatcttacctcaagtaaagaaaggccaggaaaatacgttgagataaccagtagtttaaaataaacagtgagattccttagtaaaacatataaagtttgagatatctttatgTACAGTCGAC--TCTCTTTATCTC---AAAt
Alignments
lowQualScore : 3333 1111111 1 11 1
lowQualScore : 0000 33 2 333 1 2222222 33 2 2 5555 2 2 0 2 33 444 444 2 2 33 444 8 2 555 3 6666 2 555 7777 0 8 2 88 5
lowQualScore : .... .. . ... . ....... .. . . .... . . . . .. ... ... . . .. ... . . ... . .... . ... .... . . . .. .
lowQualScore : 7777 77 0 999 4 1111111 99 9 7 3333 7 7 5 7 44 444 444 5 7 77 111 4 9 444 1 5555 7 888 1111 8 5 5 00 0
consensus : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
Reference ( family-4630 ) : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
gi|1 : AAAT-----AAAATGCAGTTGCC--ACTTGTTATCTC---AATGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAGA----CAGTGT-GATTCC--TA----A---GT-AAAA--AA--G--AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTT---GAGAT----AACCAGTAGTTTGAGGTTAATAGTGTGATTTCTATAGTAAAACAGATAAAGGG
gi|10 : agcctaTATAGTTGAC--TCTCATTCTATC---AAAGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAAATTGACA------ATTT---------------------GAA-TG--AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTT---CGGAT----AATGTG-AGTT
gi|11 : tctgGTTCACAATCACATCATCTC---AAAATGCAAAG-----G--ACCAG-GAAA-ATACTTT-----------------------GAGATAACCAGTAG-G-------TG---TA---AT-A-------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGATTTAGAATAAGTAGTgattggt
gi|12 : tCAGTTGAC--ACTCGAAATCTC---GAAGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT-AAATTAAATAATGT-GATTTC--CA---AA---GT-AAAAC--A-TGACAAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : ATAAACATAGT-AAT------G---TA---CT-AAAACAGA-TT--AAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTT---GACAT----AACAAG
gi|14 : aATTTC--TA---TA---GT-AAAACAAA-TA--AAG-AGAT--TAATGTTTAC-TTTGAGATATC------------------ACGTAAC----TTTCCAGAGAT----AATGA-TAGTaatctactgtaa
gi|14 : AGATACAGTTGAC--TATCATTATCTCTGGAAAGTcaactgtatctaatatttcc
gi|15 : atttctatagtaaaacaaataaagagattaatgtttactttgagatatcacgtaAGTACAACTGGC--TCTCATTA----------GTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAAAaatatttcc
gi|16 : tatA-GTAGTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GAATTT--TA---TA---GTAAAAATAAA-TG--A
gi|17 : attacgTTGAC--ACTCGATATCTC---AATATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAAT---TAAAAAT------GAC--TC--ATTATCTC---AAAGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCTAAACACAGT-GGTTTC--TA---TA---GT-CAGCCAAAATG--AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTT---GGGAT----AAAGA--------AAGTCAAC--TGT-ATTCCTAT
gi|3 : ttagtatATACAGTTGAC--TCCC-----------AAAGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAGAGAAACCGTGA-GATTTC--TA---TT---GT-AAAACAAA-TG--AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGT
gi|4 : TATCTC---AAAGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAGATAAATAGTGT-GGTTTC--TAACGTACATGT-AAAACAAA-TG--AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT-----GAT----AACGAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|4 : AAATATATAAAAGTACAGTAAAC--TCTCGTTA--TC---AAACTCactgtacttttatatattttgca
gi|5 : tatctcaaagtcttggagacaaagaaaataaattgagataaatagtagttttgagataaatagtgtggtttctaacgtacatgtaaaacaaatgaagcacaccataatttttactcctgtagtttgaactaacaACAGTTGAT--TCATGTAATCTC---AAAATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATAAACTATGT-GCTTTTAGTA---TT---AC-AACACAAA-TG--AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTT---GAGAT----AATGtgca
gi|6 : agtaTTCAT--TCTCCTTATCTC---AAAGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAGATAAATAGTTT-GGTTTC--TA---AA---GT-ATAACAAA-TG--A----GAT----ATCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTT---GAGAT----AACGAG-AGTcaatccgactgta
gi|6 : TACAATCGAC--TCTCGTTATCTC---AAcgattgtac
gi|7 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacattgagattaatagtagttttgagataaatagtttggtttctaaagtataacaaatgagatatctttactttgagatatcctgtagtttgatataacagagcTTATCTT---AAAGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT----A-CTAGTTA-TTT-GAAATAAAC----T-GATTTC--TA---TA---GT-GAAACAAA-TG--AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTG---GATAT----AGTGAGc
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAAATAAACAGTGT-GATTTA--TA---TA---GT-AAAACAAA-TA--AAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTT---GAGAT----AACGAactgtacatacct
gi|8 : ggTGCAGTTGGC--TTTCGTTATCTC---AAACTCaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagtTTACCTC---AA-GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAAATAAACAGTGA-GATTCC--T----TA---GT-AAAACATA-TA--AAG------------------TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTT---GAGAT----AAAGAG-AGTatgtaat
gi|9 : ggttcatcTTTGACAT----AAC--ATAG-TTT-GAGATAAAGAGAGTCGA---C--TG---TA---GT-Acgactgtagtat
gi|9 : ggttcatcttacctcaagtaaagaaaggccaggaaaatacgttgagataaccagtagtttaaaataaacagtgagattccttagtaaaacatataaagtttgagatatctttatgTACAGTCGAC--TCTCTTTATCTC---AAAt
blockSeqs : ATAT AA A TGG C GGACCAG TC A T TTCA T T C AG ACG CAT A A AC CAC C T TCA T AAAC A CCA TTAG T . . .
blockSeqs : T . A . C AAA . . . . . . . . . . . . . GA C . . . . A . . T
blockSeqs : . G . C AG . . . . . . . . . . . . . GG T . . . . A . . .
blockSeqs : . A . C AG . . . . . . . . . . . . . GC A . . . . G . . .
blockSeqs : . A . C GG . . . . . . . . . . . . . AG C . . . . A . . .
blockSeqs : . G . C AG . . . . . . . . . . . . . GG C . . . . C . . .
blockSeqs : . A . T GA . . . . . . . . . . . . . GG T . . . . G . . .
blockSeqs : . G . A AG . . . . . . . . . . . . . TG C . . . . A . .
blockSeqs : . G . T TG . . . . . . . . . . . . . GG . . . . . A . .
blockSeqs : . C . T AT . . . . . . . . . . . . . GG . . . . . A . .
blockSeqs : . G . A AG . . . . . . . . . . . . . G . . . . . A . .
blockSeqs : . G . . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqs : .
blockSeqCons :
originalCons : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
finalCons : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
Alignments
lowQualScore : 3333 1111111 1 11 1
lowQualScore : 0000 33 2 333 1 2222222 33 2 2 5555 2 2 0 2 33 444 444 2 2 33 444 8 2 555 3 6666 2 555 7777 0 8 2 88 5
lowQualScore : .... .. . ... . ....... .. . . .... . . . . .. ... ... . . .. ... . . ... . .... . ... .... . . . .. .
lowQualScore : 7777 77 0 999 4 1111111 99 9 7 3333 7 7 5 7 44 444 444 5 7 77 111 4 9 444 1 5555 7 888 1111 8 5 5 00 0
consensus : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
Reference ( family-4630 ) : NNNNNNAAAT---TAAAAATACAGTTGAC--TCTCGTTATCTC---AAAGTCCAGGG-----G--ACCAG-GAAA-ATACTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GATTTC--TA---TA---GT-AAAACAAA-TG--AAG-GGACCATAATTTTTAC-TTTGAGATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGAT----AACGAGTAGTTTGAGGTCAACAGTGTGATTCCTATAGTAAAACAGATAAAGGG
gi|1 : AAAT-----AAAATGCAGTTGCC--ACTTGTTATCTC---AATGTCCAAGA-----A--ACAAG-GAAA-ATACTTTGAGAT----TACCACTAG-TTT-GAGA----CAGTGT-GATTCC--TA----A---GT-AAAA--AA--G--AAG-GTACCATAATTTTTAC-ATCAAGATACCC---TGTA-GT----TTGGC-TACCAGAGTTT---GAGAT----AACCAGTAGTTTGAGGTTAATAGTGTGATTTCTATAGTAAAACAGATAAAGGG
gi|10 : agcctaTATAGTTGAC--TCTCATTCTATC---AAAGTC-------------A--AG-AAAA-ATAGGTTGCGCT----AACCAATAG-TTT-GAAATTGACA------ATTT---------------------GAA-TG--AAG-GAACCATAATATTTAC-TTTCAAATATCC---TGTA-GT----TTGACACAACAAAGTTT---CGGAT----AATGTG-AGTT
gi|11 : tctgGTTCACAATCACATCATCTC---AAAATGCAAAG-----G--ACCAG-GAAA-ATACTTT-----------------------GAGATAACCAGTAG-G-------TG---TA---AT-A-------------------TCATGCGTTTTAC-TTTGATATATCC---TGTA-GT----TTGACATAACAGAGTTT---GAGATTTAGAATAAGTAGTgattggt
gi|12 : tCAGTTGAC--ACTCGAAATCTC---GAAGTCCAGG-----------------AA-ATACTTTGAGAT----AACGAGTTA-CTT-AAATTAAATAATGT-GATTTC--CA---AA---GT-AAAAC--A-TGACAAG-GGAC--TAATTTTTAC-TTcgcgttttaaataat
gi|13 : ATAAACATAGT-AAT------G---TA---CT-AAAACAGA-TT--AAG-GCACTATAACTTTTTT-TTTGAGATATCA---GGTA-AT----TTGATATAATAGTGTTT---GACAT----AACAAG
gi|14 : aATTTC--TA---TA---GT-AAAACAAA-TA--AAG-AGAT--TAATGTTTAC-TTTGAGATATC------------------ACGTAAC----TTTCCAGAGAT----AATGA-TAGTaatctactgtaa
gi|14 : AGATACAGTTGAC--TATCATTATCTCTGGAAAGTcaactgtatctaatatttcc
gi|15 : atttctatagtaaaacaaataaagagattaatgtttactttgagatatcacgtaAGTACAACTGGC--TCTCATTA----------GTCCAGAG-----G--ACCAG-GGGT-ATACTTTGAAAT----AACCGGTAG-CTT-AAAAaatatttcc
gi|16 : tatA-GTAGTTTGAGAT----AACCAGTAG-TTT-GAGATAAACAGTGT-GAATTT--TA---TA---GTAAAAATAAA-TG--A
gi|17 : attacgTTGAC--ACTCGATATCTC---AATATCCAGGG-----G--ACCAGAAAAA-ATACTTTGAGAT----AACCAGTA
gi|2 : aAAAT---TAAAAAT------GAC--TC--ATTATCTC---AAAGTCCAGGGACCAGG--ACCAG-GTAA-ATGCTTTGAGAC----AAACAAT----TT-GAGCTAAACACAGT-GGTTTC--TA---TA---GT-CAGCCAAAATG--AAT-GGACAATCGTTTTTAT-TCTGAGACATCC---TGTA-GT----TTAAC---ACAGAGTTT---GGGAT----AAAGA--------AAGTCAAC--TGT-ATTCCTAT
gi|3 : ttagtatATACAGTTGAC--TCCC-----------AAAGTCCAGAG-----G--ACCAG-GACA-ATCATTTGAGAC----AACCAGTAG-TTT-GAGAGAAACCGTGA-GATTTC--TA---TT---GT-AAAACAAA-TG--AAG-GGACCATATATTTTAC-TTTGAGATATCC---CATA-GT----TTGACATAGCAGAGT
gi|4 : TATCTC---AAAGTCTTGGA-----G--ACAAA-GAAA-ATAAATTGAGAT----AAATAGTAGTTTT-GAGATAAATAGTGT-GGTTTC--TAACGTACATGT-AAAACAAA-TG--AAGCACACCATAATTTTTAC----------TCC---TGTA-GT----TTGAACTAACAGAGTTT-----GAT----AACGAG-AGTTTcgactttatttacaatgtcacatggtttcttgactggttggtg
gi|4 : AAATATATAAAAGTACAGTAAAC--TCTCGTTA--TC---AAACTCactgtacttttatatattttgca
gi|5 : tatctcaaagtcttggagacaaagaaaataaattgagataaatagtagttttgagataaatagtgtggtttctaacgtacatgtaaaacaaatgaagcacaccataatttttactcctgtagtttgaactaacaACAGTTGAT--TCATGTAATCTC---AAAATCAAGAG-----GTCACCAG-AAAATATACTTTGAGAT----AACCAATAG-GTT-GAGATAAACTATGT-GCTTTTAGTA---TT---AC-AACACAAA-TG--AAG-TGGCTATAATTTTTACTTTTGAGAT-----------------------GTAACAGAGTTT---GAGAT----AATGtgca
gi|6 : agtaTTCAT--TCTCCTTATCTC---AAAGTCTTGTG-----G--GCCAA-GAAA-ATACATTGAGAT----TAATAGTAG-TTTTGAGATAAATAGTTT-GGTTTC--TA---AA---GT-ATAACAAA-TG--A----GAT----ATCTTTAC-TTTGAGATATCC---TGTA-GT----TTGATATAACAGAGCTT---GAGAT----AACGAG-AGTcaatccgactgta
gi|6 : TACAATCGAC--TCTCGTTATCTC---AAcgattgtac
gi|7 : ttcattctccttatctcaaagtcttgtgggccaagaaaatacattgagattaatagtagttttgagataaatagtttggtttctaaagtataacaaatgagatatctttactttgagatatcctgtagtttgatataacagagcTTATCTT---AAAGTCTAGAT-----G--ACCAG-AGAA-ATACTTCCAGAT----A-CTAGTTA-TTT-GAAATAAAC----T-GATTTC--TA---TA---GT-GAAACAAA-TG--AAG-GGA--GTAATTTTTAC-TTTGATATATCCTCATGTT-GTAAACTTGACATAACAGAGTTG---GATAT----AGTGAGc
gi|8 : GAG-----G--ACCAG-GTAA-AAACTTTGAACTTTCAAACCAGAAG-TTT-GAAATAAACAGTGT-GATTTA--TA---TA---GT-AAAACAAA-TA--AAG-GGGCCATAATTTTTAT-TTTGAGATATCC---CGTA-GT----GTGACATAAGTGAGTTT---GAGAT----AACGAactgtacatacct
gi|8 : ggTGCAGTTGGC--TTTCGTTATCTC---AAACTCaagccaactgcaatgtaat
gi|9 : gggaggaccaggtaaaaactttgaactttcaaaccagaagtttgaaataaacagtgtgatttatatagtaaaacaaataaaggggccataatttttattttgagatatcccgtagtgtgacataagtTTACCTC---AA-GTAAAGAAA----G--GCCAG-GAAA-ATACGTTGAGAT----AACCAGTAG-TTT-AAAATAAACAGTGA-GATTCC--T----TA---GT-AAAACATA-TA--AAG------------------TTTGAGATATCT---T-TATGT----TTGACATAACATAGTTT---GAGAT----AAAGAG-AGTatgtaat
gi|9 : ggttcatcTTTGACAT----AAC--ATAG-TTT-GAGATAAAGAGAGTCGA---C--TG---TA---GT-Acgactgtagtat
gi|9 : ggttcatcttacctcaagtaaagaaaggccaggaaaatacgttgagataaccagtagtttaaaataaacagtgagattccttagtaaaacatataaagtttgagatatctttatgTACAGTCGAC--TCTCTTTATCTC---AAAt