lowQualScore : 11111111111111111111111111
lowQualScore : 2 55 44444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 11111111 1111111 11111111111111111111111111 111111111111 111 2222222 111111 1 8888888888888888888888888888888888888888 11111 2222222222 11 888888888888888888888888888888888 111111 222222 11 1 11111 2
lowQualScore : 3 1 22 2 5 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 33 0 33333333 8888888 6 77777777777777777777777777 2 1 0 3 555555555555 0 000 8888888 99 99 777777 5 6 6 5555555555555555555555555555555555555555 6 66666 99 5 6666666666 3 5 22 3 111111111111111111111111111111111 2 999999 77 444444 8 99 3 5 22222 888 66 0 66
lowQualScore : . . .. . . ................................................................................... . .. . ........ ....... . .......................... . . . . ............ . ... ....... .. .. ...... . . . ........................................ . ..... .. . .......... . . .. . ................................. . ...... .. ...... . .. . . ..... ... .. . ..
lowQualScore : 0 5 88 2 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 66 1 00000000 6666666 0 22222222222222222222222222 5 1 1 7 777777777777 6 000 7777777 22 22 000000 0 7 0 5555555555555555555555555555555555555555 7 77777 22 7 6666666666 4 4 22 4 000000000000000000000000000000000 5 666666 00 333333 6 00 5 0 55555 888 99 1 99
consensus : AACGAAAA-ATACAATTTACGATCAGCTGGAAATAAA-GATATTGTACACGTT----AACCAAA-AA----CT---TAA---GTTTTA--------A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---TCTG--C------GAAT-----TCTGTTCCTGTACANATACGTTT---A----TCATC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATA-TTTGTTTAACA---GC--T------------------------TG----ATGTA-AGAA-----TCTTA--AA-CAG---------GTGCTTGCNCTATTATAACA-TG------------TNTA--------------TATGTTTGTATAATTTTAATGTTGATTAGAAGGCCATA------TGGTAGATAAGTTTT-ATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCT--TAAAATAAAG--ATATTATTA
Reference ( gi|1 ) : AATTAAAATATACAATG-ATGATCAGCTGAAAATAAA-GTTACTGCATACCTT---CAACCAAA-AA----TT---TAA---GTTTTA--------A----AATGTTC--------------ATTAACT--TATGT----AGGCATGG-------ATGTTTGAAATTCTG--TTTG---AAAT-----TCTGTTCCTGTACAAATACCTTT---A----TCATC---TT---T---AC--AT--GCATT-----TAAGAGGAATTATAGAATATA-TTTGTCTAACA---GC--T------------------------TA----ATGTA-AGAA-----TCTTA--AA-CAG---------GTGTTTGCCCTATAATAACA-TG------------TGTA--------------TATGTTTGTATAATTCTAATTTTGACTAGAAGGCCATA------TGGTAGATAAGTCTA-ATACAGTTGTATGATCT-TAA-----TA---TGTTACCTTCT--TAACATAAAG--ATATTATTAGA
gi|14 : AATGAAAA-ATGAAATATATGATAAACTGGAAATAAA-GATATTGTACACATT---TAGCCTAA-AA----CT---TCA---GCTTTA--------T----AAT-TTA--------------ATAAACT--TATGA----AAGTCTGA-------CTGT
gi|12 : TAAAA-ATACAATTTACGATCAGCTGAAAATAAA-GATATTGCACACT-------ACCAAATAA----TGACATAA----TATCAGCATACAGA----AATATTT--------------ATCATCT--T---------GGCATGA-------AGATTTG-----CTGAACTTGAATAAATGTTAATCTGTTCC
gi|2 : AAATATACAATTTACGATCTGCTGACAATAAA-G-------AT---------------A-AA----CT---GAA---GTTTTA--------A----AACATT----------------TTTACT--TATGT----AGGCATGG-------ATGTTTG-----------------GAAT-----TCTATTCCTGTACACAAACGTTTATCA----TCATC---TT---T---AC--AT--GCATT-----TAAGAGTAATAATAGAATATA-TTTGTTGAAGAATTGCTGT------------------------TATAACATGTATATAGTTTTCTTTTATTAA-TAGTTCAAATCTGTGTTT---------TAACATTT------------TTTC--------------TATGGTTGTATAATTTTATTGTTGATT---AGGTCAAA------TGGTAGATAAGTTTT-ATACTGTTGTATGATCT-TAA-----AATGTTGTTACCTTCT--TAAAATAAAG--ATATTATT
gi|11 : cgAAAGGTACAATTTACAATCAACTTGAAATAAT-GATAGTGTATGCATT---GAACCTAA-AA----AT---GGA---TCTTTA--------A----AATGTTC--------------ATTTACT--TACATTTTAAAGAATGA-------ATGGCTGAAATTCTA--T---------T-----CCTGTACATATATAAGTATC------A----TCTTC---TT---T---Attaatta
gi|7 : GATCAACTGGGAATAAAAGTAATTG---ACCTTTTCCAAC-AAA-AACTGTTT---TAAAATGTTTTA--------ACTGAAACGTTC--------------ATTTACT--TGTGT----ATAAATGG-------ATGTATGACATTC-----------AA-----------TTCCTGCAT-GCTACGTTT---A----TAATC---TTCCGC---AC--AT--ACATG-----TA
gi|6 : CAGCTGAAAATAAA-GATATTGTACACATT---CAACCAAA-AA----CT---GAA---ATTTTA--------A----GACATTT--------------ATTTACTAATATGT----AGGTATGG-------AAGTTTG-----------------GAAT-----TCTATTCCTG-ACAAATATGTTT---ATCTGTCGTC---TT---TTTGAC--AT--GCATA-----AAAGAGTAATTATAGAATATATTTTGTTTAATA---GC--C------------------------AA----ATGTA-AGAA-----TCTTA--AA-AAT---------GTGTTTTCTCTATTATAACA-gaatcctaatgtggctaccagtcagatatacga
gi|4 : aattcatttatgaggagacaaaACAAA-AATACTGTATATGT-----AAACAAA-TA----TT---TAA----TTTTAG-------A----AACATCCTAAATAAGTAATAAGTCAACTG-TATAT----A---ATAGCCACATCATGT--GA---CCTG--CCTG---GAAT-----TATATTCCTGTACATATGCATTT---A----TCATCATCTT---G---AC--AC--ATATT-----CAAGAGTATTTTTAGAATATA-TTTGTTTAACA---GT--TGCTACATGTATGTGTTTTATTAACTG----ATGTA-AGAA-----TCTTA--AA-CAG---------GTGCTTACACTATTATA
gi|9 : ---AAAT-----T-TATTCCAGTACAAATAGGTTT---A----TTTTC---TT---T---ATTTATCCACATT-----TAAGAGTAATTATAAAATATA-TTTGTTTAACT---GC--T------------------------g
gi|3 : gcctggaaAT-----TCTGTTTCTGTACACAAACGTCC---A----TCATC---TT---CTTGAC--AT--GCATTGCATTCAAGAGTAATTATAGAATATT-TTTGTTTAACA---GC--A------------------------AA----ATGTA-AAAA-----TCTT------CAA---------GTGTCTGCTTTATAATTACA-TACAGTCATAAAGTTGTACTTACAATTTCTTCTGTGTTTGTATAATTTTAATGCTGCTTAGAAG---ATAGG----TGGTATATAAGTTTT-ATACTGTTGTAAGATCG-TAA-----CA---TGTTACCTTCT--TAAAATAAAA--ATATTaggtatttaagtttgtgtctttttttcacatatgatgtaaaaaccctaaaatcgtgtttactctatca
gi|5 : AATACA-TTTTTTTAA----------------------------------TG----ATGTA-AGAA-----TCTTA--AA-CA---------------TGCGCTACTATAACA-TG------------TATA--------------CAgc
gi|13 : tgcattgcttgtttgcaaagcatca------------------------TG----ATGCA-AGAA-----TCTTA--AAACAG---------ATGTTTGCTCTATTATAACA-GG------------TATG--------------TATCTTTctttcctttttcaatggttgaaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatacttagaaggccatatggtagataaattatatactgttgtaagatctctaatatattatgttaccttcttaaaaataagattttattac
gi|13 : aaaaA-CAT---------GTGCTTGCCCTTTATT--CA-------------------------------------TTTGTTTAGTTTAAATTTTGTTTAGAAAGCCATctttttcaattgtttacatgtgcttgccctttattcatttgtttagtttaaattttgtttagaaagccat
gi|10 : aaaatgatgcaagaatcttaaaacagatgtttgctctattataacaggtatgtatctttctttttcaattgttt---------GTGCTTACCATATG--------G------------TCTA--------------TATTTTTGTATAATTTCAATGTTGATTAGAAGGCCATA------TGGAAGATAAGTCTT-ATACTGTTGTATGCTCT-TGA-----TA---TTCTACCTTCT--TAAAATAAAG--AT
gi|8 : atttaacatctatatagttttctttttcaattgttcaagt--------------TGTGTTTCTATGATT--------GATTAGAAGACCATAATTATATAATTTATAAGTTTT-ATACTGTTGTATGATCT-TAC-----TA---TGTTACCTTCT--TAAAATAAAC--ATATCATTA
gi|16 : atatatatatagttatggttttcaattgttcaaatgagcttttaaaaacaatttcttcTAGAAGGCCACA------TGGTAGATAGGTTTT-ATATTGTTGTATGATCT-TTA-----TA---TGTTATCTTCC--TAA-ATAAAG--ATATTATTAttatt
gi|5 : ttTAGAAGGCCATA------TGGTAGATAAAT-TATATACTGTTGTAAGATCTCTAATATATTA---TGTTACCTTCT--TAAAAATAAG--ATTTTATTAt
gi|15 : tgcattgcttgtttgcaaagcatcaaatacatttttttaatgatgtaagaatcttaaacatgcgctactataacatgtatacactttcctttttcaatggttgaaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatactAAGGCCGTA------TGGTAGGTCCGTTTT-ATACCGTTGTGTGATCT-TCA-----TA---TGGTACCTTCTAATAA-ATAATGTTATATTc
gi|17 : CAGTTGTATGATCT-TAA-----TT---CGTTGCCTTCT--TAATATAAAG--ATttgcata
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AATACATACAATTCATGATCAACTGAAAATAAA
Alignments
lowQualScore : 44444444 11111111111 111111 333333333333333 11 1111 1111111 8888888888888 11111111 2222222 11111 555555555555555555555555555555 666666666666666666666666666666666666666666666666666666666 222222 11111
lowQualScore : 6 1 88 3 2 22222222 0 44444444444 222222 4 666666666666666 1 33 2222 5 3 8888888 6 9999999999999 2 1 55555555 888 7777777 77 77 44444 5 3 555555555555555555555555555555 5 4 4 6 4 55 666666666666666666666666666666666666666666666666666666666 1 1 33 3 888 0 111111 4 11111 777 4
lowQualScore : . . .. . . ........ . ........... ...... . ............... . .. .... . . ....... . ............. . . ........ ... ....... .. .. ..... . . .............................. . . . . . .. ......................................................... . . .. . ... . ...... . ..... ... .
lowQualScore : 7 7 99 9 2 55555555 5 00000000000 666666 0 666666666666666 0 66 1111 3 0 6666666 0 3333333333333 0 0 55555555 888 5555555 99 99 33333 7 0 000000000000000000000000000000 7 4 7 4 9 55 222222222222222222222222222222222222222222222222222222222 4 7 77 1 222 2 222222 4 11111 888 4
consensus : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---C-------GAATTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCT--ATTA-------------------TAACA-TG------------TNTA--------------TATGTTTGTATAATTTCAAT-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
Reference ( family-4586 ) : AACGAAAA-ATACAATTTACGATCAGCTGGAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---TCTGC---GAATTCTGTTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCNCT--ATTA-------------------TAACA-TG------------TNTA--------------TATGTTTGTATAATTTTAAT-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
gi|1 : AAAATATACAATG-ATGATCAGCTGAAAATAAAGTTA-CTGCATACC-TTC---AACCAAAAATT----TAA---GTTTTA-A----AATGTTC--------------ATTAACT--TATGT----AGGCATGG-------ATGTTTGAAATTCTGTTTGAAATTCTGTTCCTGTACAAATACCTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGGAATTATAGAATATATTT-GTCTAACAGCT------------------------TA--ATGTAAGAATCT-TAAA-CAGGTGTTTGCCCT--ATAA-------------------TAACA-TG------------TGTA--------------TATGTTTGTATAATTCTAAT-T-TTGACTAGAAGGCCATA------TGGTAGATAAGTCTAATACAGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAACATAAA-GATATTATTA
gi|10 : aatt-CAAGTG--TGC------TTA-------------------CCATA-TGG-----------TCTA--------------TATTTTTGTATAATTTCAAT-G-TTGATTAGAAGGCCATA------TGGAAGATAAGTCTTATACTGTTGTATGCTCT-TGA-----TA---TTCTACCTTCTTAAAATAAA-GATga
gi|11 : atttaacatctatatagttttctttttcaattgttAAAG-GTACAATTTACAATCAACTTGAAATAATGATA-GTGTATGCA-TTG---AACCTAAAAAT----GGA---TCTTTA-A----AATGTTC--------------ATTTACT--TACATTTTAAAGAATGA-------ATGGCTGA------------AATTCTATTCCTGTACATATATAAGTATC----A---TC---TT---
gi|12 : AAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGCACAC--T------ACCAAActtta
gi|13 : t------------------------TG--ATGCAAGAATCT-TAAAACAGATGTTTGCTCT--ATTA-------------------TAACA-GG------------TATG--------------TATCTTTtaatgacataatatcagcatacagaaatatttatcatcttggcatgaagatttgctgaacttgaataaatgttaatctgttcc
gi|13 : aaaaA-CATGTGCTTGCCCT---TTA-------------------T-------------------TC-------------------ATTTGTTTAGTTTAAAT-T-TTGTTTAGAAAGCCATctttttcaattgtttacatgtgcttgccctttattcatttgtttagtttaaattttgtttagaaagccat
gi|14 : aaaatgatgcaagaatcttaaaacagatgtttgctctattataacaggtatgtatctttctttttcaattgtttAATGAAAA-ATGAAATATATGATAAACTGGAAATAAAGATA-TTGTACACATTT----AGCCTAAAACT----TCA---GCTTTA-T----AAT-TTA--------------ATAAACT--TATGA----AAGTCTGA-------CTGT
gi|15 : AAGGCCGTA------TGGTAGGTCCGTTTTATACCGTTGTGTGATCT-TCA-----TA---TGGTACCTTCT---AATAAATAATGTTAT
gi|16 : TTAGAAGGCCACA------TGGTAGATAGGTTTTATATTGTTGTATGATCT-TTA-----TA---TGTTATCTTCCT-AAATAAA-GATATTATTAattttgcata
gi|17 : tGTTGTATGATCT-TAA-----TT---CGTTGCCTTCTTAATATAAA-GATt
gi|18 : ca-ATACAATTCATGATCAACTGAAAATAAA
gi|2 : aatacCGAAAT-ATACAATTTACGATCTGCTGACAATAAAGATA------------------------AACT----GAA---GTTTTA-A----AACATT----------------TTTACT--TATGT----AGGCATGG-------ATGTTTG------------GAATTCTATTCCTGTACACAAACGTTTATC----ATCATC---TT---T---AC--AT--GCATT-----TAAGAGTAATAATAGAATATATTT-GTTGAAGAA-T------------------------TG--CTGTTATAACATGTATA-TAGTT--TTCTTTT--ATTAATAGTTCAAATCTGTGTTTTAACATTT------------TTTC--------------TATGGTTGTATAATTTTATT-G-TTGATT---AGGTCAAA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----AATGTTGTTACCTTCTTAAAATAAA-GATATTATT
gi|3 : ATTCTGTTTCTGTACACAAACGTCCATC----A---TC---TT---CTTGAC--AT--GCATTGCATTCAAGAGTAATTATAGAATATTTTT-GTTTAACAGCA------------------------AA--ATGTAAAAATCT-T----CAAGTGTCTGCTTT--ATAA-------------------TTACA-TACAGTCATAAAGTTGTACTTACAATTTCTTCTGTGTTTGTATAATTTTAAT-G-CTGCTTAGAAG---ATAGG----TGGTATATAAGTTTTATACTGTTGTAAGATCG-TAA-----CA---TGTTACCTTCTTAAAATAAA-AATATTttaatta
gi|4 : ACAAAAATA-CTGTATATG-T-----AAACAAATATT----TAA----TTTTAGA----AACATCCTAAATAAGTAATAAGTCAACTG-TATAT----A---ATAGCCACATCATGT--GA---CCTGCCTGGAATTATATTCCTGTACATATGCATTTATC----A---TCATCTT---G---AC--AC--ATATT-----CAAGAGTATTTTTAGAATATATTT-GTTTAACAGTTGCTACATGTATGTGTTTTATTAACTG--ATGTAAGAATCT-TAAA-CAGGTGCTTACACT--ATTA-------------------TAgc
gi|5 : AATACATTT-TTTTAA-----------------------------TG--ATGTAAGAATCT-TAAA-CA------TGCGCT--ACTA-------------------TAACA-TG------------TATA--------------CACTTTCCT-T--TTTCAATGG-TTGAg
gi|5 : tgcattgcttgtttgcaaagcatcaGTGCCTGCCATTAATTT-------------------TGGT--TG------------TACA--------------CAAGTT-GTATG-TTTAAAT-A-CT---TAGAAGGCCATA------TGGTAGATAAATTATATACTGTTGTAAGATCTCTAATATATTA---TGTTACCTTCTTAAAAATAA-GATTTTATTAaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatacttagaaggccatatggtagataaattatatactgttgtaagatctctaatatattatgttaccttcttaaaaataagattttattac
gi|6 : tgcattgcttgtttgcaaagcatcaaatacatttttttaatgatgtaagaatcttaaacatgcgctactataacatgtatacactttcctttttcaatggttgaaatACAAACAGCTGAAAATAAAGATA-TTGTACACA-TTC---AACCAAAAACT----GAA---ATTTTA-A----GACATTT--------------ATTTACTAATATGT----AGGTATGG-------AAGTTTG------------GAATTCTATTCCTG-ACAAATATGTTTATCTGTCG---TC---TT---TTTGAC--AT--GCATA-----AAAGAGTAATTATAGAATATATTTTGTTTAATAGCC------------------------AA--ATGTAAGAATCT-TAAA-AATGTGTTTTCTCT--ATTA-------------------TAACA-c
gi|7 : aattcatttatgaggagGATCAACTGGGAATAAAAGTAATTG---ACC-TTTTCCAAC-AAAAACTGTTTTAAAATGTTTTA-ACTGAAACGTTC--------------ATTTACT--TGTGT----ATAAATGG-------ATGTATGA---C---------ATTCAATTCCTGCATGC-TACGTTTATA----A---TC---TTCCGC---AC--AT--ACATG-----TA
gi|8 : TTTCTAT-GATTGATTAGAAGACCATAATTATATAATTTATAAGTTTTATACTGTTGTATGATCT-TAC-----TA---TGTTACCTTCTTAAAATAAA-CATATCATTAgaatcctaatgtggctaccagtcagatatacga
gi|9 : atatatatatagttatggttttcaattgttcaaatgagcttttaaaaacaatttcttctgtgAATT-TATTCCAGTACAAATAGGTTTATT----T---TC---TT---T---ATTTATCCACATT-----TAAGAGTAATTATAAAATATATTT-GTTTAACTGCT------------------------AGGTATTTAAGttatt
Alignments
lowQualScore : 44444444 11111111111 111111 333333333333333 11 1111 1111111 6666666666666666666 11111111 2222222 11111 555555555555555555555555555555 6666666666666666666666666666666666666666666666666666666666666 11 222222 11111
lowQualScore : 6 1 88 3 2 22222222 0 44444444444 222222 4 666666666666666 1 33 2222 5 3 8888888 6 7777777777777777777 5 1 55555555 888 7777777 77 77 44444 5 3 555555555555555555555555555555 5 5 4 1 1 55 4 5555555555555555555555555555555555555555555555555555555555555 6 00 0 4 666 0 111111 4 11111 777 4
lowQualScore : . . .. . . ........ . ........... ...... . ............... . .. .... . . ....... . ................... . . ........ ... ....... .. .. ..... . . .............................. . . . . . .. . ............................................................. . .. . . ... . ...... . ..... ... .
lowQualScore : 7 7 99 9 2 55555555 5 00000000000 666666 0 666666666666666 0 66 1111 3 0 6666666 0 5555555555555555555 0 0 55555555 888 5555555 99 99 33333 7 0 000000000000000000000000000000 7 0 5 4 4 55 0 5555555555555555555555555555555555555555555555555555555555555 5 11 9 4 222 2 222222 4 11111 888 4
consensus : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCT--ATT-ATAA--CA----TG------------TGT----A--------------CATNTT---------TGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
Reference ( family-4586 ) : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCT--ATT-ATAA--CA----TG------------TNT----A--------------TATGTT---------TGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
gi|1 : AAAATATACAATG-ATGATCAGCTGAAAATAAAGTTA-CTGCATACC-TTC---AACCAAAAATT----TAA---GTTTTA-A----AATGTTC--------------ATTAACT--TATGT----AGGCATGG-------ATGTTTGAAATTCTGTTT-------GAAATTCTGTTCCTGTACAAATACCTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGGAATTATAGAATATATTT-GTCTAACAGCT------------------------TA--ATGTAAGAATCT-TAAA-CAGGTGTTTGCCCT--ATA-ATAA--CA----TG------------TGT----A--------------TATGTT---------TGTATAATTCTAA-T-T-TTGACTAGAAGGCCATA------TGGTAGATAAGTCTAATACAGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAACATAAA-GATATTATTA
gi|10 : aattGTGCTTACCAT--ATG--------------G------------TCT----A--------------TATTTT---------TGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGAAGATAAGTCTTATACTGTTGTATGCTCT-TGA-----TA---TTCTACCTTCTTAAAATAAA-GATga
gi|11 : atttaacatctatatagttttctttttcaattgttcaagtAAAG-GTACAATTTACAATCAACTTGAAATAATGATA-GTGTATGCA-TTG---AACCTAAAAAT----GGA---TCTTTA-A----AATGTTC--------------ATTTACT--TACATTTTAAAGAATGA-------ATGGCTGA------------------AA-TTCTATTCCTGTACATATATAAGTATC----A---TC---TT---
gi|12 : AAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGCACAC--T------ACCAAActtta
gi|13 : t------------------------TG--ATGCAAGAATCT-TAAAACAGATGTTTGCTCT--ATT-ATAA--CA----GG------------TAT----G--------------TATCTT---------TCT-T--TTTCAATT-G-TTtaatgacataatatcagcatacagaaatatttatcatcttggcatgaagatttgctgaacttgaataaatgttaatctgttcc
gi|13 : aaaaA-CATGTGCTTGCCCT---TT-AT------------------------TC-----------------------ATT---------TGTTTAGTTTAAA-T-T-TTGTTTAGAAAGCCATtacatgtgcttgccctttattcatttgtttagtttaaattttgtttagaaagccat
gi|14 : aaaatgatgcaagaatcttaaaacagatgtttgctctattataacaggtatgtatctttctttttcaattgtttAATGAAAA-ATGAAATATATGATAAACTGGAAATAAAGATA-TTGTACACATTT----AGCCTAAAACT----TCA---GCTTTA-T----AAT-TTA--------------ATAAACT--TATGA----AAGTCTGA-------CTGT
gi|15 : AAGGCCGTA------TGGTAGGTCCGTTTTATACCGTTGTGTGATCT-TCA-----TA---TGGTACCTTCT---AATAAATAATGTTAT
gi|16 : TTAGAAGGCCACA------TGGTAGATAGGTTTTATATTGTTGTATGATCT-TTA-----TA---TGTTATCTTCCT-AAATAAA-GATATTATTAattttgcata
gi|17 : tGTTGTATGATCT-TAA-----TT---CGTTGCCTTCTTAATATAAA-GATt
gi|18 : ca-ATACAATTCATGATCAACTGAAAATAAA
gi|2 : aatacCGAAAT-ATACAATTTACGATCTGCTGACAATAAAGATA------------------------AACT----GAA---GTTTTA-A----AACATT----------------TTTACT--TATGT----AGGCATGG-------ATGTTTG------------------GAA-TTCTATTCCTGTACACAAACGTTTATC----ATCATC---TT---T---AC--AT--GCATT-----TAAGAGTAATAATAGAATATATTT-GTTGAAGAA-T------------------------TG--CTGTTATAACATGTATA-TAGTT--TTCTTTT--ATTAATAGTTCAAATCTG------------TGTTTTAA--------------CATTTTTTCTATGGTTGTATAATTTTAT-T-G-TTGATT---AGGTCAAA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----AATGTTGTTACCTTCTTAAAATAAA-GATATTATT
gi|3 : A-TTCTGTTTCTGTACACAAACGTCCATC----A---TC---TT---CTTGAC--AT--GCATTGCATTCAAGAGTAATTATAGAATATTTTT-GTTTAACAGCA------------------------AA--ATGTAAAAATCT-T----CAAGTGTCTGCTTT--ATA-ATTA--CA----TACAGTCATAAAGTTGT----ACTTACAATTTCTTCTGTGTT---------TGTATAATTTTAA-T-G-CTGCTTAGAAG---ATAGG----TGGTATATAAGTTTTATACTGTTGTAAGATCG-TAA-----CA---TGTTACCTTCTTAAAATAAA-AATATTttaatta
gi|4 : ACAAAAATA-CTGTATATG-T-----AAACAAATATT----TAA----TTTTAGA----AACATCCTAAATAAGTAATAAGTCAACTG-TATAT----A---ATAGCCACATCATGT--GA---------CCTGCCTGGAA-TTATATTCCTGTACATATGCATTTATC----A---TCATCTT---G---AC--AC--ATATT-----CAAGAGTATTTTTAGAATATATTT-GTTTAACAGTTGCTACATGTATGTGTTTTATTAACTG--ATGTAAGAATCT-TAAA-CAGGTGCTTACACT--ATT-ATAgc
gi|5 : AATACATTT-TTTTAA-----------------------------TG--ATGTAAGAATCT-TAAA-CA------TGCGCT--ACT-ATAA--CA----TG------------TAT----A--------------CACTTT---------CCT-T--TTTCAA-TGG-TTGAg
gi|5 : tgcattgcttgtttgcaaagcatcaGTGCCTGCCATTAATT-TTGG--T-----TG------------TAC----A--------------CAAGTT----------GTATG-TTTAAA-T-A-CT---TAGAAGGCCATA------TGGTAGATAAATTATATACTGTTGTAAGATCTCTAATATATTA---TGTTACCTTCTTAAAAATAA-GATTTTATTAaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatacttagaaggccatatggtagataaattatatactgttgtaagatctctaatatattatgttaccttcttaaaaataagattttattac
gi|6 : tgcattgcttgtttgcaaagcatcaaatacatttttttaatgatgtaagaatcttaaacatgcgctactataacatgtatacactttcctttttcaatggttgaaatACAAACAGCTGAAAATAAAGATA-TTGTACACA-TTC---AACCAAAAACT----GAA---ATTTTA-A----GACATTT--------------ATTTACTAATATGT----AGGTATGG-------AAGTTTG------------------GAA-TTCTATTCCTG-ACAAATATGTTTATCTGTCG---TC---TT---TTTGAC--AT--GCATA-----AAAGAGTAATTATAGAATATATTTTGTTTAATAGCC------------------------AA--ATGTAAGAATCT-TAAA-AATGTGTTTTCTCT--ATT-ATAA--CA----c
gi|7 : aattcatttatgaggagGATCAACTGGGAATAAAAGTAATTG---ACC-TTTTCCAAC-AAAAACTGTTTTAAAATGTTTTA-ACTGAAACGTTC--------------ATTTACT--TGTGT----ATAAATGG-------ATGTATGA---------C---------A-TTCAATTCCTGCATGC-TACGTTTATA----A---TC---TTCCGC---AC--AT--ACATG-----TA
gi|8 : TTTCTA-T-GATTGATTAGAAGACCATAATTATATAATTTATAAGTTTTATACTGTTGTATGATCT-TAC-----TA---TGTTACCTTCTTAAAATAAA-CATATCATTAgaatcctaatgtggctaccagtcagatatacga
gi|9 : atatatatatagttatggttttcaattgttcaaatgagcttttaaaaacaatttcttctgtgAA-TT-TATTCCAGTACAAATAGGTTTATT----T---TC---TT---T---ATTTATCCACATT-----TAAGAGTAATTATAAAATATATTT-GTTTAACTGCT------------------------AGGTATTTAAGttatt
Alignments
lowQualScore : 44444444 11111111111 111111 333333333333333 11 1111 1111111 6666666666666666666 11111111 2222222 11111 555555555555555555555555555555 7777777777777777777777777777777777777777777777777777777777777 11 222222 11111
lowQualScore : 6 1 88 3 2 22222222 0 44444444444 222222 4 666666666666666 1 33 2222 5 3 8888888 6 7777777777777777777 5 1 55555555 888 7777777 77 77 44444 5 3 555555555555555555555555555555 5 5 4 1 22 4 7777777777777777777777777777777777777777777777777777777777777 6 00 0 4 666 0 111111 4 11111 777 4
lowQualScore : . . .. . . ........ . ........... ...... . ............... . .. .... . . ....... . ................... . . ........ ... ....... .. .. ..... . . .............................. . . . . .. . ............................................................. . .. . . ... . ...... . ..... ... .
lowQualScore : 7 7 99 9 2 55555555 5 00000000000 666666 0 666666666666666 0 66 1111 3 0 6666666 0 5555555555555555555 0 0 55555555 888 5555555 99 99 33333 7 0 000000000000000000000000000000 7 0 5 4 11 0 3333333333333333333333333333333333333333333333333333333333333 5 11 9 4 222 2 222222 4 11111 888 4
consensus : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
Reference ( family-4586 ) : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
gi|1 : AAAATATACAATG-ATGATCAGCTGAAAATAAAGTTA-CTGCATACC-TTC---AACCAAAAATT----TAA---GTTTTA-A----AATGTTC--------------ATTAACT--TATGT----AGGCATGG-------ATGTTTGAAATTCTGTTT-------GAAATTCTGTTCCTGTACAAATACCTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGGAATTATAGAATATATTT-GTCTAACAGCT------------------------TA--ATGTAAGAATCT-TAAA-CAGGTGTTTGCCCTATA-ATAA--CA----TG------------TGT----AT--------------ATG-T---------TTGTATAATTCTAA-T-T-TTGACTAGAAGGCCATA------TGGTAGATAAGTCTAATACAGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAACATAAA-GATATTATTA
gi|10 : aattGTGCTTACCATATG--------------G------------TCT----AT--------------ATT-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGAAGATAAGTCTTATACTGTTGTATGCTCT-TGA-----TA---TTCTACCTTCTTAAAATAAA-GATga
gi|11 : atttaacatctatatagttttctttttcaattgttcaagtAAAG-GTACAATTTACAATCAACTTGAAATAATGATA-GTGTATGCA-TTG---AACCTAAAAAT----GGA---TCTTTA-A----AATGTTC--------------ATTTACT--TACATTTTAAAGAATGA-------ATGGCTGA------------------AA-TTCTATTCCTGTACATATATAAGTATC----A---TC---TT---
gi|12 : AAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGCACAC--T------ACCAAActtta
gi|13 : t------------------------TG--ATGCAAGAATCT-TAAAACAGATGTTTGCTCTATT-ATAA--CA----GG------------TAT----GT--------------ATC-T---------TTCT-T--TTTCAATT-G-TTtaatgacataatatcagcatacagaaatatttatcatcttggcatgaagatttgctgaacttgaataaatgttaatctgttcc
gi|13 : aaaaA-CATGTGCTTGCCCT-TT-AT----------T---------------------C--------------A---T---------TTGTTTAGTTTAAA-T-T-TTGTTTAGAAAGCCATtacatgtgcttgccctttattcatttgtttagtttaaattttgtttagaaagccat
gi|14 : aaaatgatgcaagaatcttaaaacagatgtttgctctattataacaggtatgtatctttctttttcaattgtttAATGAAAA-ATGAAATATATGATAAACTGGAAATAAAGATA-TTGTACACATTT----AGCCTAAAACT----TCA---GCTTTA-T----AAT-TTA--------------ATAAACT--TATGA----AAGTCTGA-------CTGT
gi|15 : AAGGCCGTA------TGGTAGGTCCGTTTTATACCGTTGTGTGATCT-TCA-----TA---TGGTACCTTCT---AATAAATAATGTTAT
gi|16 : TTAGAAGGCCACA------TGGTAGATAGGTTTTATATTGTTGTATGATCT-TTA-----TA---TGTTATCTTCCT-AAATAAA-GATATTATTAattttgcata
gi|17 : tGTTGTATGATCT-TAA-----TT---CGTTGCCTTCTTAATATAAA-GATt
gi|18 : ca-ATACAATTCATGATCAACTGAAAATAAA
gi|2 : aatacCGAAAT-ATACAATTTACGATCTGCTGACAATAAAGATA------------------------AACT----GAA---GTTTTA-A----AACATT----------------TTTACT--TATGT----AGGCATGG-------ATGTTTG------------------GAA-TTCTATTCCTGTACACAAACGTTTATC----ATCATC---TT---T---AC--AT--GCATT-----TAAGAGTAATAATAGAATATATTT-GTTGAAGAA-T------------------------TG--CTGTTATAACATGTATA-TAGTT--TTCTTTTATTAATAGTTCAAATCTG------------TGTTTTAAC--------------ATT-TTTTCTATGGTTGTATAATTTTAT-T-G-TTGATT---AGGTCAAA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----AATGTTGTTACCTTCTTAAAATAAA-GATATTATT
gi|3 : A-TTCTGTTTCTGTACACAAACGTCCATC----A---TC---TT---CTTGAC--AT--GCATTGCATTCAAGAGTAATTATAGAATATTTTT-GTTTAACAGCA------------------------AA--ATGTAAAAATCT-T----CAAGTGTCTGCTTTATA-ATTA--CA----TACAGTCATAAAGTTGT----ACTTACAATTTCTTCTGTG-T---------TTGTATAATTTTAA-T-G-CTGCTTAGAAG---ATAGG----TGGTATATAAGTTTTATACTGTTGTAAGATCG-TAA-----CA---TGTTACCTTCTTAAAATAAA-AATATTttaatta
gi|4 : ACAAAAATA-CTGTATATG-T-----AAACAAATATT----TAA----TTTTAGA----AACATCCTAAATAAGTAATAAGTCAACTG-TATAT----A---ATAGCCACATCATGT--GA---------CCTGCCTGGAA-TTATATTCCTGTACATATGCATTTATC----A---TCATCTT---G---AC--AC--ATATT-----CAAGAGTATTTTTAGAATATATTT-GTTTAACAGTTGCTACATGTATGTGTTTTATTAACTG--ATGTAAGAATCT-TAAA-CAGGTGCTTACACTATT-ATAgc
gi|5 : AATACATTT-TTTTAA-----------------------------TG--ATGTAAGAATCT-TAAA-CA------TGCGCTACT-ATAA--CA----TG------------TAT----AC--------------ACT-T---------TCCT-T--TTTCAA-TGG-TTGAg
gi|5 : tgcattgcttgtttgcaaagcatcaGTGCCTGCC--ATT-A-AT--TT----TGGT----------TGT----AC--------------ACAAG---------TTGTATG-TTTAAA-T-A-CT---TAGAAGGCCATA------TGGTAGATAAATTATATACTGTTGTAAGATCTCTAATATATTA---TGTTACCTTCTTAAAAATAA-GATTTTATTAaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatacttagaaggccatatggtagataaattatatactgttgtaagatctctaatatattatgttaccttcttaaaaataagattttattac
gi|6 : tgcattgcttgtttgcaaagcatcaaatacatttttttaatgatgtaagaatcttaaacatgcgctactataacatgtatacactttcctttttcaatggttgaaatACAAACAGCTGAAAATAAAGATA-TTGTACACA-TTC---AACCAAAAACT----GAA---ATTTTA-A----GACATTT--------------ATTTACTAATATGT----AGGTATGG-------AAGTTTG------------------GAA-TTCTATTCCTG-ACAAATATGTTTATCTGTCG---TC---TT---TTTGAC--AT--GCATA-----AAAGAGTAATTATAGAATATATTTTGTTTAATAGCC------------------------AA--ATGTAAGAATCT-TAAA-AATGTGTTTTCTCTATT-ATAA--CA----c
gi|7 : aattcatttatgaggagGATCAACTGGGAATAAAAGTAATTG---ACC-TTTTCCAAC-AAAAACTGTTTTAAAATGTTTTA-ACTGAAACGTTC--------------ATTTACT--TGTGT----ATAAATGG-------ATGTATGA---------C---------A-TTCAATTCCTGCATGC-TACGTTTATA----A---TC---TTCCGC---AC--AT--ACATG-----TA
gi|8 : TTTCTA-T-GATTGATTAGAAGACCATAATTATATAATTTATAAGTTTTATACTGTTGTATGATCT-TAC-----TA---TGTTACCTTCTTAAAATAAA-CATATCATTAgaatcctaatgtggctaccagtcagatatacga
gi|9 : atatatatatagttatggttttcaattgttcaaatgagcttttaaaaacaatttcttctgtgAA-TT-TATTCCAGTACAAATAGGTTTATT----T---TC---TT---T---ATTTATCCACATT-----TAAGAGTAATTATAAAATATATTT-GTTTAACTGCT------------------------AGGTATTTAAGttatt
Alignments
lowQualScore : 44444444 11111111111 111111 333333333333333 11 1111 1111111 6666666666666666666 11111111 2222222 11111 555555555555555555555555555555 7777777777777777777777777777777777777777777777777777777777777 11 222222 11111
lowQualScore : 6 1 88 3 2 22222222 0 44444444444 222222 4 666666666666666 1 33 2222 5 3 8888888 6 7777777777777777777 5 1 55555555 888 7777777 77 77 44444 5 3 555555555555555555555555555555 5 5 4 1 22 4 7777777777777777777777777777777777777777777777777777777777777 6 00 0 4 666 0 111111 4 11111 777 4
lowQualScore : . . .. . . ........ . ........... ...... . ............... . .. .... . . ....... . ................... . . ........ ... ....... .. .. ..... . . .............................. . . . . .. . ............................................................. . .. . . ... . ...... . ..... ... .
lowQualScore : 7 7 99 9 2 55555555 5 00000000000 666666 0 666666666666666 0 66 1111 3 0 6666666 0 5555555555555555555 0 0 55555555 888 5555555 99 99 33333 7 0 000000000000000000000000000000 7 0 5 4 11 0 3333333333333333333333333333333333333333333333333333333333333 5 11 9 4 222 2 222222 4 11111 888 4
consensus : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
Reference ( family-4586 ) : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
gi|1 : AAAATATACAATG-ATGATCAGCTGAAAATAAAGTTA-CTGCATACC-TTC---AACCAAAAATT----TAA---GTTTTA-A----AATGTTC--------------ATTAACT--TATGT----AGGCATGG-------ATGTTTGAAATTCTGTTT-------GAAATTCTGTTCCTGTACAAATACCTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGGAATTATAGAATATATTT-GTCTAACAGCT------------------------TA--ATGTAAGAATCT-TAAA-CAGGTGTTTGCCCTATA-ATAA--CA----TG------------TGT----AT--------------ATG-T---------TTGTATAATTCTAA-T-T-TTGACTAGAAGGCCATA------TGGTAGATAAGTCTAATACAGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAACATAAA-GATATTATTA
gi|10 : aattGTGCTTACCATATG--------------G------------TCT----AT--------------ATT-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGAAGATAAGTCTTATACTGTTGTATGCTCT-TGA-----TA---TTCTACCTTCTTAAAATAAA-GATga
gi|11 : atttaacatctatatagttttctttttcaattgttcaagtAAAG-GTACAATTTACAATCAACTTGAAATAATGATA-GTGTATGCA-TTG---AACCTAAAAAT----GGA---TCTTTA-A----AATGTTC--------------ATTTACT--TACATTTTAAAGAATGA-------ATGGCTGA------------------AA-TTCTATTCCTGTACATATATAAGTATC----A---TC---TT---
gi|12 : AAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGCACAC--T------ACCAAActtta
gi|13 : t------------------------TG--ATGCAAGAATCT-TAAAACAGATGTTTGCTCTATT-ATAA--CA----GG------------TAT----GT--------------ATC-T---------TTCT-T--TTTCAATT-G-TTtaatgacataatatcagcatacagaaatatttatcatcttggcatgaagatttgctgaacttgaataaatgttaatctgttcc
gi|13 : aaaaA-CATGTGCTTGCCCT-TT-AT----------T---------------------C--------------A---T---------TTGTTTAGTTTAAA-T-T-TTGTTTAGAAAGCCATtacatgtgcttgccctttattcatttgtttagtttaaattttgtttagaaagccat
gi|14 : aaaatgatgcaagaatcttaaaacagatgtttgctctattataacaggtatgtatctttctttttcaattgtttAATGAAAA-ATGAAATATATGATAAACTGGAAATAAAGATA-TTGTACACATTT----AGCCTAAAACT----TCA---GCTTTA-T----AAT-TTA--------------ATAAACT--TATGA----AAGTCTGA-------CTGT
gi|15 : AAGGCCGTA------TGGTAGGTCCGTTTTATACCGTTGTGTGATCT-TCA-----TA---TGGTACCTTCT---AATAAATAATGTTAT
gi|16 : TTAGAAGGCCACA------TGGTAGATAGGTTTTATATTGTTGTATGATCT-TTA-----TA---TGTTATCTTCCT-AAATAAA-GATATTATTAattttgcata
gi|17 : tGTTGTATGATCT-TAA-----TT---CGTTGCCTTCTTAATATAAA-GATt
gi|18 : ca-ATACAATTCATGATCAACTGAAAATAAA
gi|2 : aatacCGAAAT-ATACAATTTACGATCTGCTGACAATAAAGATA------------------------AACT----GAA---GTTTTA-A----AACATT----------------TTTACT--TATGT----AGGCATGG-------ATGTTTG------------------GAA-TTCTATTCCTGTACACAAACGTTTATC----ATCATC---TT---T---AC--AT--GCATT-----TAAGAGTAATAATAGAATATATTT-GTTGAAGAA-T------------------------TG--CTGTTATAACATGTATA-TAGTT--TTCTTTTATTAATAGTTCAAATCTG------------TGTTTTAAC--------------ATT-TTTTCTATGGTTGTATAATTTTAT-T-G-TTGATT---AGGTCAAA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----AATGTTGTTACCTTCTTAAAATAAA-GATATTATT
gi|3 : A-TTCTGTTTCTGTACACAAACGTCCATC----A---TC---TT---CTTGAC--AT--GCATTGCATTCAAGAGTAATTATAGAATATTTTT-GTTTAACAGCA------------------------AA--ATGTAAAAATCT-T----CAAGTGTCTGCTTTATA-ATTA--CA----TACAGTCATAAAGTTGT----ACTTACAATTTCTTCTGTG-T---------TTGTATAATTTTAA-T-G-CTGCTTAGAAG---ATAGG----TGGTATATAAGTTTTATACTGTTGTAAGATCG-TAA-----CA---TGTTACCTTCTTAAAATAAA-AATATTttaatta
gi|4 : ACAAAAATA-CTGTATATG-T-----AAACAAATATT----TAA----TTTTAGA----AACATCCTAAATAAGTAATAAGTCAACTG-TATAT----A---ATAGCCACATCATGT--GA---------CCTGCCTGGAA-TTATATTCCTGTACATATGCATTTATC----A---TCATCTT---G---AC--AC--ATATT-----CAAGAGTATTTTTAGAATATATTT-GTTTAACAGTTGCTACATGTATGTGTTTTATTAACTG--ATGTAAGAATCT-TAAA-CAGGTGCTTACACTATT-ATAgc
gi|5 : AATACATTT-TTTTAA-----------------------------TG--ATGTAAGAATCT-TAAA-CA------TGCGCTACT-ATAA--CA----TG------------TAT----AC--------------ACT-T---------TCCT-T--TTTCAA-TGG-TTGAg
gi|5 : tgcattgcttgtttgcaaagcatcaGTGCCTGCC--ATT-A-AT--TT----TGGT----------TGT----AC--------------ACAAG---------TTGTATG-TTTAAA-T-A-CT---TAGAAGGCCATA------TGGTAGATAAATTATATACTGTTGTAAGATCTCTAATATATTA---TGTTACCTTCTTAAAAATAA-GATTTTATTAaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatacttagaaggccatatggtagataaattatatactgttgtaagatctctaatatattatgttaccttcttaaaaataagattttattac
gi|6 : tgcattgcttgtttgcaaagcatcaaatacatttttttaatgatgtaagaatcttaaacatgcgctactataacatgtatacactttcctttttcaatggttgaaatACAAACAGCTGAAAATAAAGATA-TTGTACACA-TTC---AACCAAAAACT----GAA---ATTTTA-A----GACATTT--------------ATTTACTAATATGT----AGGTATGG-------AAGTTTG------------------GAA-TTCTATTCCTG-ACAAATATGTTTATCTGTCG---TC---TT---TTTGAC--AT--GCATA-----AAAGAGTAATTATAGAATATATTTTGTTTAATAGCC------------------------AA--ATGTAAGAATCT-TAAA-AATGTGTTTTCTCTATT-ATAA--CA----c
gi|7 : aattcatttatgaggagGATCAACTGGGAATAAAAGTAATTG---ACC-TTTTCCAAC-AAAAACTGTTTTAAAATGTTTTA-ACTGAAACGTTC--------------ATTTACT--TGTGT----ATAAATGG-------ATGTATGA---------C---------A-TTCAATTCCTGCATGC-TACGTTTATA----A---TC---TTCCGC---AC--AT--ACATG-----TA
gi|8 : TTTCTA-T-GATTGATTAGAAGACCATAATTATATAATTTATAAGTTTTATACTGTTGTATGATCT-TAC-----TA---TGTTACCTTCTTAAAATAAA-CATATCATTAgaatcctaatgtggctaccagtcagatatacga
gi|9 : atatatatatagttatggttttcaattgttcaaatgagcttttaaaaacaatttcttctgtgAA-TT-TATTCCAGTACAAATAGGTTTATT----T---TC---TT---T---ATTTATCCACATT-----TAAGAGTAATTATAAAATATATTT-GTTTAACTGCT------------------------AGGTATTTAAGttatt
blockSeqs : . T AT T T CTTTTCC GTTTTAAAATG ACTGA G CTAAATAAGTAATAA T AA TTTA A A CCACATC C ACCTGCCTGG . T TGTCG ATC CTTG TT CC GCATT T G TTGCTACATGTATGTGTTTTATTAACTG G A G C CA A TACATACAGTCATAAAGTTGTACTTACAATTTCTTCTGTGT A AA T GG ATTATA C TATAT TGT T
blockSeqs : . T G C C ATTG GGAT GA A C A G . A T . T AC . C ATCA . TTTG . . . . C CTAGGT . . T T TC . AGTTCAAATCTGTGTTTTAACATTTTTTCTATGG T AG . GA GG . . . .
blockSeqs : . T T T C ATTT TCAG A A A T . . G C . T A . C A . CCGC . . . . C CAAA . . G C CC . ATTTTGGTTGTACACAAG A AA . G . . . . .
blockSeqs : . C T T T ATTC GAAG T A T A . . G T . A G . T A . T . . . . T CCAA . . A T TT . AACAGGTATGTATCT A AA . G . . . . .
blockSeqs : . T C T C GT GAAA A G C T . . T A . . G . A A . G . . . . C TTG . . G C TT . AACATGTATACACTT A G . T . . . . .
blockSeqs : T . . T TAA A . . T . . . . . . C A . T . . . . . TG . . T C AC . GTCTATATTT . . . G . . . . .
blockSeqs : . . . . . A T . . . T GC . TCAT . . . G . . . . .
blockSeqs : . TC . . A . . . .
blockSeqs : . C .
blockSeqCons : G******************
originalCons : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGA---------C-------GAA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
finalCons : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AGGNATGG-------ATGTTTGG------------------AA-TTCTATTCCTGTACANATACGTTTATC----A---TC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
Alignments
lowQualScore : 44444444 11111111111 111111 333333333333333 11 2222222222222222 222222222222 1111 2222222 11111 555555555555555555555555555555 7777777777777777777777777777777777777777777777777777777777777 11 222222 11111
lowQualScore : 6 1 88 3 2 22222222 0 44444444444 222222 4 666666666666666 1 33 1111111111111111 5 77 0 555555555555 1 888 0000 888 7777777 77 77 44444 5 3 555555555555555555555555555555 5 5 4 1 22 4 7777777777777777777777777777777777777777777777777777777777777 6 00 0 4 666 0 111111 4 11111 777 4
lowQualScore : . . .. . . ........ . ........... ...... . ............... . .. ................ . .. . ............ . ... .... ... ....... .. .. ..... . . .............................. . . . . .. . ............................................................. . .. . . ... . ...... . ..... ... .
lowQualScore : 7 7 99 9 2 55555555 5 00000000000 666666 0 666666666666666 0 66 1111111111111111 7 99 3 666666666666 0 888 6666 888 5555555 99 99 33333 7 0 000000000000000000000000000000 7 0 5 4 11 0 3333333333333333333333333333333333333333333333333333333333333 5 11 9 4 222 2 222222 4 11111 888 4
consensus : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AG--GC------ATG-GA--TGTTTGGAA------------TTCTATTCCTGTACANATACGTTT---ATC----ATC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
Reference ( family-4586 ) : AACGAAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGTACACG-TT----AACCAAAAACT----TAA---GTTTTA-A----AACGTTC--------------ATTNACT--TATGT----AG--GN------ATG-GA--TGTTTGGAA------------TTCTATTCCTGTACANATACGTTT---ATC----ATC---TT---T---AC--AT--GCATT-----TAAGAGTAATTATAGAATATATTT-GTTTAACAGCT------------------------TG--ATGTAAGAATCT-TAAA-CAGGTGCTTGCCCTATT-ATAA--CA----TG------------TGT----AC--------------ATN-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAAAATAAA-GATATTATTA
gi|1 : AAAATATACAATG-ATGATCAGCTGAAAATAAAGTTA-CTGCATACC-TTC---AACCAAAAATT----TAA---GTTTTA-A----AATGTTC--------------ATTAACT--TATGT----AG--GC------ATG-GA--TGTTTGAAATTCTGTTTGAAATTCTGTTCCTGTACAAATACCTTT---ATC----ATC---TT---T---AC--AT--GCATT-----TAAGAGGAATTATAGAATATATTT-GTCTAACAGCT------------------------TA--ATGTAAGAATCT-TAAA-CAGGTGTTTGCCCTATA-ATAA--CA----TG------------TGT----AT--------------ATG-T---------TTGTATAATTCTAA-T-T-TTGACTAGAAGGCCATA------TGGTAGATAAGTCTAATACAGTTGTATGATCT-TAA-----TA---TGTTACCTTCTTAACATAAA-GATATTATTA
gi|10 : aattGTGCTTACCATATG--------------G------------TCT----AT--------------ATT-T---------TTGTATAATTTCAA-T-G-TTGATTAGAAGGCCATA------TGGAAGATAAGTCTTATACTGTTGTATGCTCT-TGA-----TA---TTCTACCTTCTTAAAATAAA-GATga
gi|11 : atttaacatctatatagttttctttttcaattgttcaagtAAAG-GTACAATTTACAATCAACTTGAAATAATGATA-GTGTATGCA-TTG---AACCTAAAAAT----GGA---TCTTTA-A----AATGTTC--------------ATTTACT--TACATTTTAAA--GA------ATG-AA--TGGCTGAAA------------TTCTATTCCTGTACATATATAAGT---ATC----ATC---TT---
gi|12 : AAAA-ATACAATTTACGATCAGCTGAAAATAAAGATA-TTGCACAC--T------ACCAAActtta
gi|13 : t------------------------TG--ATGCAAGAATCT-TAAAACAGATGTTTGCTCTATT-ATAA--CA----GG------------TAT----GT--------------ATC-T---------TTCT-T--TTTCAATT-G-TTtaatgacataatatcagcatacagaaatatttatcatcttggcatgaagatttgctgaacttgaataaatgttaatctgttcc
gi|13 : aaaaA-CATGTGCTTGCCCT-TT-AT----------T---------------------C--------------A---T---------TTGTTTAGTTTAAA-T-T-TTGTTTAGAAAGCCATtacatgtgcttgccctttattcatttgtttagtttaaattttgtttagaaagccat
gi|14 : aaaatgatgcaagaatcttaaaacagatgtttgctctattataacaggtatgtatctttctttttcaattgtttAATGAAAA-ATGAAATATATGATAAACTGGAAATAAAGATA-TTGTACACATTT----AGCCTAAAACT----TCA---GCTTTA-T----AAT-TTA--------------ATAAACT--TATGA----AA--GT------CTG-AC--TGT
gi|15 : AAGGCCGTA------TGGTAGGTCCGTTTTATACCGTTGTGTGATCT-TCA-----TA---TGGTACCTTCT---AATAAATAATGTTAT
gi|16 : TTAGAAGGCCACA------TGGTAGATAGGTTTTATATTGTTGTATGATCT-TTA-----TA---TGTTATCTTCCT-AAATAAA-GATATTATTAattttgcata
gi|17 : tGTTGTATGATCT-TAA-----TT---CGTTGCCTTCTTAATATAAA-GATt
gi|18 : ca-ATACAATTCATGATCAACTGAAAATAAA
gi|2 : aatacCGAAAT-ATACAATTTACGATCTGCTGACAATAAAGATA------------------------AACT----GAA---GTTTTA-A----AACATT----------------TTTACT--TATGT----AG--GC------ATG-GA--TGTTTGGAA------------TTCTATTCCTGTACACAAACGTTTATCATC----ATC---TT---T---AC--AT--GCATT-----TAAGAGTAATAATAGAATATATTT-GTTGAAGAA-T------------------------TG--CTGTTATAACATGTATA-TAGTT--TTCTTTTATTAATAGTTCAAATCTG------------TGTTTTAAC--------------ATT-TTTTCTATGGTTGTATAATTTTAT-T-G-TTGATT---AGGTCAAA------TGGTAGATAAGTTTTATACTGTTGTATGATCT-TAA-----AATGTTGTTACCTTCTTAAAATAAA-GATATTATT
gi|3 : A------------TTCTGTTTCTGTACACAAACGTCC---ATC----ATC---TT---CTTGAC--AT--GCATTGCATTCAAGAGTAATTATAGAATATTTTT-GTTTAACAGCA------------------------AA--ATGTAAAAATCT-T----CAAGTGTCTGCTTTATA-ATTA--CA----TACAGTCATAAAGTTGT----ACTTACAATTTCTTCTGTG-T---------TTGTATAATTTTAA-T-G-CTGCTTAGAAG---ATAGG----TGGTATATAAGTTTTATACTGTTGTAAGATCG-TAA-----CA---TGTTACCTTCTTAAAATAAA-AATATTttaatta
gi|4 : ACAAAAATA-CTGTATATG-T-----AAACAAATATT----TAA----TTTTAGA----AACATCCTAAATAAGTAATAAGTCAACTG-TATAT----AATAGCCACATCATGTGACCTGCCTGGAA------------TTATATTCCTGTACATATGCATTT---ATC----ATCATCTT---G---AC--AC--ATATT-----CAAGAGTATTTTTAGAATATATTT-GTTTAACAGTTGCTACATGTATGTGTTTTATTAACTG--ATGTAAGAATCT-TAAA-CAGGTGCTTACACTATT-ATAgc
gi|5 : AATACATTT-TTTTAA-----------------------------TG--ATGTAAGAATCT-TAAA-CA------TGCGCTACT-ATAA--CA----TG------------TAT----AC--------------ACT-T---------TCCT-T--TTTCAA-TGG-TTGAg
gi|5 : tgcattgcttgtttgcaaagcatcaGTGCCTGCC--ATT-A-AT--TT----TGGT----------TGT----AC--------------ACAAG---------TTGTATG-TTTAAA-T-A-CT---TAGAAGGCCATA------TGGTAGATAAATTATATACTGTTGTAAGATCTCTAATATATTA---TGTTACCTTCTTAAAAATAA-GATTTTATTAaatgtgcctgccattaattttggttgtacacaagttgtatgtttaaatacttagaaggccatatggtagataaattatatactgttgtaagatctctaatatattatgttaccttcttaaaaataagattttattac
gi|6 : tgcattgcttgtttgcaaagcatcaaatacatttttttaatgatgtaagaatcttaaacatgcgctactataacatgtatacactttcctttttcaatggttgaaatACAAACAGCTGAAAATAAAGATA-TTGTACACA-TTC---AACCAAAAACT----GAA---ATTTTA-A----GACATTT--------------ATTTACTAATATGT----AG--GT------ATG-GA--AGTTTGGAA------------TTCTATTCCTG-ACAAATATGTTT---ATCTGTCGTC---TT---TTTGAC--AT--GCATA-----AAAGAGTAATTATAGAATATATTTTGTTTAATAGCC------------------------AA--ATGTAAGAATCT-TAAA-AATGTGTTTTCTCTATT-ATAA--CA----c
gi|7 : aattcatttatgaggagGATCAACTGGGAATAAAAGTAATTG---ACC-TTTTCCAAC-AAAAACTGTTTTAAAATGTTTTA-ACTGAAACGTTC--------------ATTTACT--TGTGT----AT--AA------ATG-GA--TGTATGACA------------TTCAATTCCTGCATGC-TACGTTT---ATA----ATC---TTCCGC---AC--AT--ACATG-----TA
gi|8 : TTTCTA-T-GATTGATTAGAAGACCATAATTATATAATTTATAAGTTTTATACTGTTGTATGATCT-TAC-----TA---TGTTACCTTCTTAAAATAAA-CATATCATTAgaatcctaatgtggctaccagtcagatatacga
gi|9 : atatatatatagttatggttttcaattgttcaaatgagcttttaaaaacaatttcttctgtgAA------------TT-TATTCCAGTACAAATAGGTTT---ATT----TTC---TT---T---ATTTATCCACATT-----TAAGAGTAATTATAAAATATATTT-GTTTAACTGCT------------------------AGGTATTTAAGttatt