lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11111 11111 1111 111 44444444 2 1 111111 1 1111 2222222 11 2 1 111 222222 2222 666666666666666 1 11 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 11111 2222222222 1111 6666 111 11 111
lowQualScore : 6 00000 3 44444 2222 3 000 5 6 5 99999999 1 0 0 3 0 3 111111 7 0 7777 3 1 1111111 88 0 3 8 3 2 0 3 444 2 3 2 888888 2 0 6 3 8888 8 6 555555555555555 8 8 0 6 0 5 2 11 44 3 6 1 5 6 0 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 44 1 88888 5555 6 2 1111111111 4444 0000 000 11 8 777 1 6 3 2 6
lowQualScore : . ..... . ..... .... . ... . . . ........ . . . . . . ...... . . .... . . ....... .. . . . . . . . ... . . . ...... . . . . .... . . ............... . . . . . . . .. .. . . . . . . . .............................................................................................................................. . .. . ..... .... . . .......... .... .... ... .. . ... . . . . .
lowQualScore : 7 55555 7 33333 1111 9 000 7 7 2 88888888 0 6 8 0 6 8 222222 8 2 2222 2 0 7777777 55 0 5 0 5 0 3 0 777 0 0 3 000000 0 7 7 7 3333 3 0 000000000000000 3 3 7 3 7 0 5 00 00 5 7 4 0 0 8 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 33 3 77777 5555 7 5 7777777777 2222 7777 000 66 1 444 7 0 2 2 0
consensus : TTTGTTCGCTCCCCATCTCCATATTNT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACCGTA-G-CTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACANATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTANATTTGCANTTAGCTANTTGNGCCANGCATTCGNG---TGCCTGAAAAGTAANATCATATTTTANTGTGATTGTTTT--TTTTATGTGTGGGCTGACATAA------A-----GA-GAAGTTTAAATAATAAGTGAAAGAACAGATGAACANAATGGAAANTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTTTGAAACACCTGCTGTAAGACCAC----------------GGGCC-----CAN---------C-TT--GGA--------GT-----------TTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCA--GGTAC-ACATTCAA----GTTTGTCATGTTAACAGT---GGCTCTTTTCAATNGAGTCATC-GAAAACATGCACGACATTGGACATTCTGAGGCCTA
Reference ( gi|2 ) : TTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCATAGGGCTTTAAAGCACTTTACCATATTAAATACAGGTGCAAATACGTACTTATCTGGATTTAGACAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATTGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGTTGACATAA------A-----GA-GTAGTATAAACAATAAGTGTAGGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTAGAGATGTTACGATGGAACATTTTAATATAGCTAACAAATTCATTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAA-------GGAA----------------------TTTGGAACACC------AAGACCAC----------------GGGCC-----CAT---------C-TT--GGA--------GT-----------TTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAAGTATTCCGCCGTGAGGA-AAATTGGCTGTCA--GGTGC-ACATTCAA----GTT----ATGTTAACAGT---GGCTCTTTTCAACGGAGTAATC-G-AAACATGCACGGCATTGGACATTCTGAGACTTAG
gi|12 : TTTGCTCGCTCCCCATCTCCATATTTTAAGTCCTG-----GGTA-A-----TT----TGTATT--CCAA---CATT---GACGCGTATCTCATTAACATCACATTAT
gi|1 : tcgagagataatgcaggTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TATATACGTTATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCGTAGGGCTTTAAAGCACTTTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGA-TTAGGCAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCgttctgttagtggtatatacgtattaacgaagcccattgtgcatgtctgatcaacattcattgtaccacattcatatgattcacacaaacaagaccttttaagcactgtcgttattgaatacaggtgc
gi|16 : TTGTTCGCTCCC-ATCTCCATATGAT--TTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCAATACCG-GACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaatggaaagttgacagtgtcggggtggtgtctagagatgttacggtggaacatattaatatagataacaaattcacttgtattgaacaaaagagcaaagtgtcttgtcataactaaataaaggaatttggaacaccaagaccacgggcccattgtttaaaacacctgctgtaagacttctaacttggagtttgtcctggtactacataaataaatacagcatgcatctgaggtattccgccgtgaggaaaattggctgtcaggtacacattcaagtttgtcatgttaacagtggctcttttcaacagagtaatcgaaacatgcacgaaattggacattctgaggccta
gi|8 : CATATTCT--ATTCTGTAAATGGTATACAATATA----CATAATAACGAAACCCATT---G-TACATGTCTGATCAACATC-CATTGTACCACATTCATATGATTCACACAAACAATATCTTAAGACTTTTAAGCACTGTAACATATTGAATA---GTGCAAATACATAGATATCTG-ATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTAAGCTCCAATACCAGACATGTTTATGTACCGGGGTAT-------GTTATAAGCCGTCA
gi|12 : ttggcctgtatctcattaacatCACATTAT--GTTCTGTTAGTGGTATA-----TA----CGTATTAACGAAGCCCATT---G-TGCATGTCTGATCAACATT-CATTGTACCACATTCATATGATTCACACAAACAAGAC-------CTTTTAAGCACTGT-CGTTATTGAATACAGGTGC
gi|9 : tcgagagataatgcaggtttgctcgctccccatctccatattttaagtcctgggtaatttgtattccaacattgacgcgtatctcattaacatATATTTT--GCTCTGTTAATGATATA-----TA----CGTAATACCGAATCCCATT---G-TACATGTTTGATTAACATG-AATTGTACCA---------CGTTCACATAAACAAGA-CAT-----TTT-AAGCATTGTACCATATTGAATACCGGTGCAAATATGTACTTGCCT-GATTTAGGCAAGCTTAGATTTCAATGAAATTGTATCAAGTATGGT-----AGTTCGTTCCAATACCGGACATGTTTATGTATCGAGGTAT-------GTTGTAAG
gi|5 : ggtaatttgtatcccaacattggcgtgtttctttttaacataTA-----TA----CGTAATAACAAAACCCATT---C-TACATGTCTGATCAACATT-CAGTGTACCACATTTATATCAATTACATAAACAAGA-CAT-----TTT-AAGCATTATATAATATTAAATACAGGTGCAACTACATACTTA-----AT--------------ATTTAAATGAAATTGTATCAAATAGGGT-----AGTTAGCCCCAATACCTGACATGTTTATATACCAGGGCATGTTATTGGTTATAAGCTGTCAC-CATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTCACATTTTATTGTGATTGTT----TTTTATGT
gi|4 : TATCTGGGTT-AGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGTTAGGGCAGTTTGCTCCAATACCAGACATGTTTATGTACC-GGGTAT-------GTTAGAAGCTGTCACattg
gi|3 : CCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTACATTTGTATTTAGCTACTTGAGCCACGCATTCTTA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGCTGACATAA------A-----GA-GTAGTATAATTAATAAGTGAAAGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGTGTGGTGGCTAGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGGAAAGTGTCTTGTCATAAATAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACC---------------------TC-----TAA---------C-TT--GGA--------GT-----------TTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCA--GGTAC-ACATTCAA----GTTTGTCATGTTAACAGT---GGCTCTTTTCAACGGAGTAATC-G-AAACATGCACGACATTGGACATTCTGAGGCCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaataaaatggacatttgacagtgtttgggtggtggctagagatgttacggtggaaattttaatatagataacaaactcacttgtattgaacaaaaaaaaatgtcatgtcatta
gi|16 : CCAATACCGGACATGTTT
gi|13 : ttgttcgctcccatctccatatgattttctgtaaatggtatatacgtaataacgaaacTTAGATTT-CAATTA---AATTGTATCAAGTATTTGAGGAGTGCCTGAAAAATAAAATCATATTTAAATGTGATTGTGTT--TTTTATGTATGGGCTGACATAAAATCACA-----GC-GAAGGTTAAACAATAAATGAAAGAATAGATGAACAGAATTGAA
gi|15 : TATGTGTGGACTGAAATAA------AATCAAGACGAAGTTTAAATAATAAGTGGAGAAACAGGTGAGCAGGATGAAAACTTGGCAAATTATTGGGA----GGTTGGTGATGGTATGATGGGACAT
gi|4 : aATCAATAAAATGGACATTTGACAG--TGTTTGGGTGGTGGCTAGAGATGTTACGGTGGAA-ATTTTAATATAGATAACAAACTCACTTGTATTGAACAAAAA---AAAATGTCATGTCAT
gi|1 : tatctgggttaggcaagtttagatttaaatgaaattgtatcaagtaggttagggcagtttgctccaataccagacatgtttatgtaccgggtatgttagaagctgtcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATGGAAAGTTGACAG--TGTCGGGGTGGTGTCTAGAGATGTTACGGTGGAACATATTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACT---------------------TC-----TAA---------C-TT--GGA--------GT-----------TTGTCCTGGTACTACATAAATAAATACAGC-------ATGCATCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCA--GGTAC-ACATTCAA----GTTTGTCATGTTAACAGT---GGCTCTTTTCAACAGAGTAATC-G-AAACATGCACGAAATTGGACATTCTGAGGCCTAta
gi|7 : ttgttcgctccccatctccatatgctgttctgtaaatggtatatatatacgttataacgaaacccattgtacatgtctgatcaacattcattgtaccacattcatatcattcacacaaacaaaaccgtagggctttaaagcactttaccatattgaatacaggtgcaaatacgtacttatctggattaggcaagtttagatttaaatgaaattgtataaagtagggtaggacagttcgctccaataccggacatgtttatgtaccggggtatgttataagctgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG--TGTCTGG-TGGTGGCTGGAGATGTTACTGTGGAAAATTTTAATATAGGCAACAAATTCACTTATATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAA-------GGAA----------------------TT-GGAACACC------AAGAGCAT----------------GGGCC-----CAT---------TGTTCAGGACACCTGCTGTATGACCTCTAACTGTTCTGGCACTACATAA-TAAATACAGCCTAATACATGCATCTGAGGTATTCTGTCATGAGGA-AAATTGGCTGTCA--GGTAC-ATATTCAA----GTTTGTCATGTTAACAGT---TGCTCTTTTCAATTGAGCCACC-GAAAACATGCATGACATTGGACATTCTGAGGCC
gi|6 : TGGAGATGTTACGGTGGAAAATATTAATATAGATACCAAATTCACTTGTATTTAACAACAGAGCAAAGTGTCATGTCATAACTAAAACAA-------GGAA----------------------TT-GCAACACC------TAGACCACAGGTCCTTTGTTCATGGGGCTTGCTGCATGGCCTCTAAC-TT--GGG--------GT-----------TTGTCCCGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGCGATATTCCTCTGTGAGGA-AAATTG--TATT----GTACAATATTTAAGTGTGTC----ATGTTAACAGT---GGCTCTTTTTAAATGAGTCATC-A-AAACATGCACGACAT
gi|10 : -TT--GGA--------AT-----------TTGCCCTGGTACTTCATGTATAA-TACAGCGCAA-ACACTCATC--------------ACGAGGG-GAATTAGCTGT--------------TCAA----TTTTGCCATGTTACCAAT---GACGCTTTTCAATAGAGTCATC-GAAAACATGCAAGACAacaggtcgagacaacaacggatatattggacattctgaggc
gi|11 : catatcatatttaaaaaaagacattggatcatcaatatcacaggaccattgttcagggcatctgctggctgacctctaatgtcttaccgctaatgtcgaaaa-TT--TGA--------AT-----------TTGCCCTGGTACTTCATGTATAA-TATAGCGAAA-ACGTGCATC--------------ACGAGGACAAACAGG-TGTCATCGAT---ACATTCAA----ATTTGCCATGTTAACAATCATGACACTTTTCAATCGAGTCATCAA-AAACATGCAAGACAT---ATATATTGAGACaataggttgacacaataacggatctaatttgtgtatgctg
gi|14 : acccattgttctgtgcatctgctagctgacctctaatttcttgctagtgatgtcgaaaaTC----ATGTTGACAGT---GGCTCTTTTCAATCGAGTCATC-GAAAACACGCATGACATaacagcggatctattggacatcctg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TGTTTGCTTCCCATCTCCATATTTCAAGTCCTGGGCAATTTGCATCCCAACA
Alignments
lowQualScore : 11111 1111 6666666 1 1111111 1 222222 22 444444444444 1 1 777777777777777777777777777777
lowQualScore : 2 22 77 1 22222 0000 2 888 5 5 3333333 1 1 55 1 7777 1 8888888 88 3 2 1 5 1 5 1 1 1 444444 0 1 3 1 66 77 1 444444444444 0 4 4 1 1 1 99 1 4 2 3 1 1 1 99 1111 555555555555555555555555555555 4 1 5 0 8 5 1 0 1 5 0 22 5 5 66 888 1 9 0 0
lowQualScore : . .. .. . ..... .... . ... . . ....... . . .. . .... . ....... .. . . . . . . . . . ...... . . . . .. .. . ............ . . . . . . .. . . . . . . . .. .... .............................. . . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 5 33 99 9 55555 6666 2 888 0 7 3333333 0 7 00 3 7777 0 6666666 33 3 0 0 2 0 2 0 0 0 555555 8 0 0 0 22 55 4 888888888888 0 0 0 2 0 0 22 0 3 1 2 3 0 0 22 8888 333333333333333333333333333333 8 0 0 3 4 0 3 7 4 7 7 11 7 0 99 888 0 4 2 8
consensus : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-TAGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAA------A-----GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTT--TAGGACACCTGCTG---------TAA-G----ACC--------TCTAACTTGGAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
Reference ( family-4425 ) : TTTGTTCGCTCCCCATCTCCATATTNT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACCGTAG--CTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACANATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTANATTTGCANTTAGCTANTTGNGCCANGCATTCGNG---TGCCTGAAAAGTAANATCATATTTTANTGTGATTGTTTTT--TTTATGTGTGGGCTGACATAA------A-----GA-GAAGTTTAAATAATAAGTGAAAGAACAGATGAACANAATGGAAANTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTT--TGAAACACCTGCTG---------TAA-G----ACCACG---GGCCCANCTTGGAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAATNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
gi|1 : TTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TATATACGTTATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCGTAGGGCTTTAAAGCACTTTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATT-AGGCAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTC
gi|1 : ACAATGGAAAGTTGACAG--TGTCGGGGTGGTGTCTAGAGATGTTACGGTGGAACATATTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTT--TAAAACACCTGCTG---------TAA-G----ACT--------TCTAACTTGGAGTTTGTCCTGGTACTACATAAATAAATACAG-------CATGCATCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACAGAGTAATCG-AAACATGCACGAAATTGGACATTCTGAGGCCTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaatggaaagttgacagtgtcggggtggtgtctagagatgttacggtggaacatattaatatagataacaaattcacttgtattgaacaaaagagcaaagtgtcttgtcataactaaataaaggaatttggaacaccaagaccacgggcccattgtttaaaacacctgctgtaagacttctaacttggagtttgtcctggtactacataaataaatacagcatgcatctgaggtattccgccgtgaggaaaattggctgtcaggtacacattcaagtttgtcatgttaacagtggctcttttcaacagagtaatcgaaacatgcacgaaattggacattctgaggccta
gi|10 : ttgttcgctccccatctccatatgctgttctgtaaatggtatatatatacgttataacgaaacccattgtacatgtctgatcaacattcattgtaccacattcatatcattcacacaaacaaaaccgtagggctttaaagcactttaccatattgaatacaggtgcaaatacgtacttatctggattaggcaagtttagatttaaatgaaattgtataaagtagggtaggacagttcgctccaataccggacatgtttatgtaccggggtatgttataagctgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATATCATATTTAAAAAAAGACATT-GGATCATCAATATCACAGGACCATTGTT--CAGGGCATCTGCTGGCTGACCTCTAATGTCTTACCGCTAATGTCGAAAATTGGAATTTGCCCTGGTACTTCATGTATAA-TACAGCGCAA-ACACTCATC--------------ACGAGGG-GAATTAGCTGT------------TCAATT-TTG--CCATGTTACCAAT---GACGCTTTTCAATAGAGTCATCGAAAACATGCAAGACA
gi|11 : TTTGAATTTGCCCTGGTACTTCATGTATAA-TATAGCGAAA-ACGTGCATC--------------ACGAGGACAAACAGG-TGTCATCGAT-ACATTCAAAT-TTG--CCATGTTAACAATCATGACACTTTTCAATCGAGTCATCAAAAACATGCAAGACAT---ATATATTGAGACaataggttgacacaataacggatctaatttgtgtatgctg
gi|12 : acccattgttctgtgcatctgctagctgacctctaatttcttgctagtgatgtcgaaaaTTTGCTCGCTCCCCATCTCCATATTTTAAGTCCTG-----GGTA-A-----TT----TGTATT--CCAA---CATT---GACGCGTATCTCATTAACATCACATTATaacagcggatctattggacatcctg
gi|12 : tcgagagataatgcaggCACATTAT--GTTCTGTTAGTGGTATA-----TA----CGTATTAACGAAGCCCATT---G-TGCATGTCTGATCAACATT-CATTGTACCACATTCATATGATTCACACAAACAAGAC-------CTTTTAAGCACTGT-CGTTATTGAATACAGGTGCgttctgttagtggtatatacgtattaacgaagcccattgtgcatgtctgatcaacattcattgtaccacattcatatgattcacacaaacaagaccttttaagcactgtcgttattgaatacaggtgc
gi|13 : tcgagagataatgcaggtttgctcgctccccatctccatattttaagtcctgggtaatttgtattccaacattgacgcgtatctcattaacatTTAGATTT-CAATTA---AATTGTATCAAGTATTTGAGGAGTGCCTGAAAAATAAAATCATATTTAAATGTGATTGTGTTT--TTTATGTATGGGCTGACATAAAATCACA-----GC-GAAGGTTAAACAATAAATGAAAGAATAGATGAACAGAATTGAA
gi|14 : AGTGTTGCATCATGTTGACAGT---GGCTCTTTTCAATCGAGTCATCGAAAACACGCATGACAT
gi|15 : agaagaatttgttattgtgtggtgtttTATGTGTGGACTGAAATAA------AATCAAGACGAAGTTTAAATAATAAGTGGAGAAACAGGTGAGCAGGATGAAAACTTGGCAAATTATTGGGA----GGTTGGTGATGGTATGATGGGACATacaggtcgagacaacaaccaacctttagaacactatgaggccta
gi|16 : aTTGTTCGCTCCC-ATCTCCATATGAT--TTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCAATACCG-GACATGTTT
gi|2 : TTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCATAGGGCTTTAAAGCACTTTACCATATTAAATACAGGTGCAAATACGTACTTATCTGGATTTAGACAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATTGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGTTGACATAA------A-----GA-GTAGTATAAACAATAAGTGTAGGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTAGAGATGTTACGATGGAACATTTTAATATAGCTAACAAATTCATTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAA-------GGAA----------------------TT--TGGAACACC---------------AA-G----ACCACG---GGCCCATCTTGGAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAAGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTGC-ACATTCAAGT-T------ATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGGCATTGGACATTCTGAGACTTA
gi|3 : CCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTACATTTGTATTTAGCTACTTGAGCCACGCATTCTTA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGCTGACATAA------A-----GA-GTAGTATAATTAATAAGTGAAAGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGTGTGGTGGCTAGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGGAAAGTGTCTTGTCATAAATAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTT--TAAAACACCTGCTG---------TAA-G----ACC--------TCTAACTTGGAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGACATTGGACATTCTGAGGCCTg
gi|4 : TATCTGGGTT-AGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGTTAGGGCAGTTTGCTCCAATACCAGACATGTTTATGTACC-GGGTAT-------GTTAGAAGCTGTCAC
gi|4 : ATCAATAAAATGGACATTTGACAG--TGTTTGGGTGGTGGCTAGAGATGTTACGGTGGAA-ATTTTAATATAGATAACAAACTCACTTGTATTGAACAAAAA---AAAATGTCATGTCATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaataaaatggacatttgacagtgtttgggtggtggctagagatgttacggtggaaattttaatatagataacaaactcacttgtattgaacaaaaaaaaatgtcatgtcatta
gi|5 : tatctgggttaggcaagtttagatttaaatgaaattgtatcaagtaggttagggcagtttgctccaataccagacatgtttatgtaccgggtatgttagaagctgtcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-----TA----CGTAATAACAAAACCCATT---C-TACATGTCTGATCAACATT-CAGTGTACCACATTTATATCAATTACATAAACAAGAC---A----TTTTAAGCATTATATAATATTAAATACAGGTGCAACTACATACTTA-----AT--------------ATTTAAATGAAATTGTATCAAATAGGGT-----AGTTAGCCCCAATACCTGACATGTTTATATACCAGGGCATGTTATTGGTTATAAGCTGTCAC-CATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTCACATTTTATTGTGATTG--TTT--TTTATGTATta
gi|6 : TGGAGATGTTACGGTGGAAAATATTAATATAGATACCAAATTCACTTGTATTTAACAACAGAGCAAAGTGTCATGTCATAACTAAAACAAGGAA-TTGCAACACCTAGACCACAGGTCCTTTGTTCATGGG--GCTTGCTG---------CAT-G----GCC--------TCTAACTTGGGGTTTGTCCCGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGCGATATTCCTCTGTGAGGA-AAATTG--TATT--GTACAATATTTAAGT-GTG--TCATGTTAACAGT---GGCTCTTTTTAAATGAGTCATC-AAAACATGCACGACATtg
gi|7 : AG--TGTCTGG-TGGTGGCTGGAGATGTTACTGTGGAAAATTTTAATATAGGCAACAAATTCACTTATATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAATT-GGAACACCAAGAGCATGGGCCCATTGTT--CAGGACACCTGCTG---------TAT-G----ACC--------TCTAACT--------GTTCTGGCACTACATAA-TAAATACAGCCTAATACATGCATCTGAGGTATTCTGTCATGAGGA-AAATTGGCTGTCAGGTAC-ATATTCAAGT-TTG--TCATGTTAACAGT---TGCTCTTTTCAATTGAGCCACCGAAAACATGCATGACATTGGACATTCTGAGGCCTacaggtcgagacaacaacggatatattggacattctgaggc
gi|8 : CATATTCT--ATTCTGTAAATGGTATACAATATA----CATAATAACGAAACCCATT---G-TACATGTCTGATCAACATC-CATTGTACCACATTCATATGATTCACACAAACAATATCTTAAGACTTTTAAGCACTGTAACATATTGAATA---GTGCAAATACATAGATATCTG-ATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTAAGCTCCAATACCAGACATGTTTATGTACCGGGGTAT-------GTTATAAGCCGTCA
gi|9 : ttggcctgtatctcattaacatATATTTT--GCTCTGTTAATGATATA-----TA----CGTAATACCGAATCCCATT---G-TACATGTTTGATTAACATG-AATTGTACCA---------CGTTCACATAAACAAGAC---A----TTTTAAGCATTGTACCATATTGAATACCGGTGCAAATATGTACTTGCCT-GATTTAGGCAAGCTTAGATTTCAATGAAATTGTATCAAGTATGGT-----AGTTCGTTCCAATACCGGACATGTTTATGTATCGAGGTAT-------GTTGTAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TGTTTGCTTCCCATCTCCATATTTCAAGTCCTGGGCAATTTGCATCCCAACA
Alignments
lowQualScore : 11111 1111 55555555 1 1111111 1 111 555555 1 1 11111 777777777777777777777777777777777777777777777777
lowQualScore : 1 77 1 22222 0000 2 888 5 5 44444444 1 1 55 1 7777 1 8888888 7 3 1 5 5 777 1 0 3 8 1 333333 0 1 1 1 1 99 1 4 1 9 1 0 777 44444 999999999999999999999999999999999999999999999999 5 11 8 5 1 0 1 5 0 22 5 5 66 888 22 9 0 0
lowQualScore : . .. . ..... .... . ... . . ........ . . .. . .... . ....... . . . . . ... . . . . . ...... . . . . . .. . . . . . . ... ..... ................................................ . .. . . . . . . . .. . . .. ... .. . . .
lowQualScore : 7 99 9 55555 6666 2 888 0 7 22222222 0 7 00 3 7777 0 6666666 3 3 0 2 2 555 0 2 2 8 4 888888 0 0 0 2 0 22 0 3 0 5 0 4 111 33333 999999999999999999999999999999999999999999999999 0 00 4 0 3 7 4 7 7 11 7 0 99 888 11 4 2 8
consensus : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAATT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTANGACC-----TCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
Reference ( family-4425 ) : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAA------GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTTTAGGACACCTGCTGTAAGACC-----TCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
gi|1 : TTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TATATACGTTATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCGT-AGGGCTTTAAAGCACTTTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATT-AGGCAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTC
gi|1 : ACAATGGAAAGTTGACAG--TGTCGGGGTGGTGTCTAGAGATGTTACGGTGGAACATATTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACT-----TCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGC-------ATGCATCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACAGAGTAATCG-AAACATGCACGAAATTGGACATTCTGAGGCCTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaatggaaagttgacagtgtcggggtggtgtctagagatgttacggtggaacatattaatatagataacaaattcacttgtattgaacaaaagagcaaagtgtcttgtcataactaaataaaggaatttggaacaccaagaccacgggcccattgtttaaaacacctgctgtaagacttctaacttggagtttgtcctggtactacataaataaatacagcatgcatctgaggtattccgccgtgaggaaaattggctgtcaggtacacattcaagtttgtcatgttaacagtggctcttttcaacagagtaatcgaaacatgcacgaaattggacattctgaggccta
gi|10 : ttgttcgctccccatctccatatgctgttctgtaaatggtatatatatacgttataacgaaacccattgtacatgtctgatcaacattcattgtaccacattcatatcattcacacaaacaaaaccgtagggctttaaagcactttaccatattgaatacaggtgcaaatacgtacttatctggattaggcaagtttagatttaaatgaaattgtataaagtagggtaggacagttcgctccaataccggacatgtttatgtaccggggtatgttataagctgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATATCATATTTAAAAAAAGACATT-GGATCATCAATATCACAGGACCATTGTTCAGGGCATCTGCTGGCTGACC-----TCTAA---TGTCTTACCGCTAATGTCGAAAATTG-------------------GAATTTGCCCTGGTACTTCATGTATAA-TACAGCGCAA-ACACTCATC--------------ACGAGGG-GAATTAGCTGT------------TCAATT-TTG--CCATGTTACCAAT---GACGCTTTTCAATAGAGTCATCGAAAACATGCAAGACA
gi|11 : CCCATTGTTCTGTGCATCTGCTAGCTGACC-----TCTAATTTC----------------------TTGCTAGTGATGTCGAAAATTTGAATTTGCCCTGGTACTTCATGTATAA-TATAGCGAAA-ACGTGCATC--------------ACGAGGACAAACAGG-TGTCATCGAT-ACATTCAAAT-TTG--CCATGTTAACAATCATGACACTTTTCAATCGAGTCATCAAAAACATGCAAGACAT---ATATATTGAGACaataggttgacacaataacggatctaatttgtgtatgctg
gi|12 : aTTTGCTCGCTCCCCATCTCCATATTTTAAGTCCTG-----GGTA-A-----TT----TGTATT--CCAA---CATT---GACGCGTATCTCATTAACATCACATTATaacagcggatctattggacatcctg
gi|12 : tcgagagataatgcaggCACATTAT--GTTCTGTTAGTGGTATA-----TA----CGTATTAACGAAGCCCATT---G-TGCATGTCTGATCAACATT-CATTGTACCACATTCATATGATTCACACAAACAAGAC--------CTTTTAAGCACTGT-CGTTATTGAATACAGGTGCgttctgttagtggtatatacgtattaacgaagcccattgtgcatgtctgatcaacattcattgtaccacattcatatgattcacacaaacaagaccttttaagcactgtcgttattgaatacaggtgc
gi|13 : tcgagagataatgcaggtttgctcgctccccatctccatattttaagtcctgggtaatttgtattccaacattgacgcgtatctcattaacatTTAGATTT-CAATTA---AATTGTATCAAGTATTTGAGGAGTGCCTGAAAAATAAAATCATATTTAAATGTGATTGTGTTT--TTTATGTATGGGCTGACATAAAATCACAGC-GAAGGTTAAACAATAAATGAAAGAATAGATGAACAGAATTGAA
gi|14 : AGTGTTGCATCATGTTGACAGT---GGCTCTTTTCAATCGAGTCATCGAAAACACGCATGACAT
gi|15 : agaagaatttgttattgtgtggtgtttTATGTGTGGACTGAAATAAAATCAA-GACGAAGTTTAAATAATAAGTGGAGAAACAGGTGAGCAGGATGAAAACTTGGCAAATTATTGGGA----GGTTGGTGATGGTATGATGGGACATacaggtcgagacaacaaccaacctttagaacactatgaggccta
gi|16 : aTTGTTCGCTCCC-ATCTCCATATGAT--TTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCAATACCG-GACATGTTT
gi|17 : TGTTTGCTTCCCATCTCCATATT
gi|2 : TTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCAT-AGGGCTTTAAAGCACTTTACCATATTAAATACAGGTGCAAATACGTACTTATCTGGATTTAGACAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATTGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGTTGACATAAA------GA-GTAGTATAAACAATAAGTGTAGGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTAGAGATGTTACGATGGAACATTTTAATATAGCTAACAAATTCATTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAA-------GGAA----------------------TTTGGAACACC------AAGACCACGGGCCCAT---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAAGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTGC-ACATTCAAGT-T------ATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGGCATTGGACATTCTGAGACTTAtcaagtcctgggcaatttgcatcccaaca
gi|3 : CCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTACATTTGTATTTAGCTACTTGAGCCACGCATTCTTA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGCTGACATAAA------GA-GTAGTATAATTAATAAGTGAAAGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGTGTGGTGGCTAGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGGAAAGTGTCTTGTCATAAATAAATAAAGGAATTTGGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACC-----TCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGACATTGGACATTCTGAGGCCTg
gi|4 : TATCTGGGTT-AGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGTTAGGGCAGTTTGCTCCAATACCAGACATGTTTATGTACC-GGGTAT-------GTTAGAAGCTGTCAC
gi|4 : ATCAATAAAATGGACATTTGACAG--TGTTTGGGTGGTGGCTAGAGATGTTACGGTGGAA-ATTTTAATATAGATAACAAACTCACTTGTATTGAACAAAAA---AAAATGTCATGTCATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaataaaatggacatttgacagtgtttgggtggtggctagagatgttacggtggaaattttaatatagataacaaactcacttgtattgaacaaaaaaaaatgtcatgtcatta
gi|5 : tatctgggttaggcaagtttagatttaaatgaaattgtatcaagtaggttagggcagtttgctccaataccagacatgtttatgtaccgggtatgttagaagctgtcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-----TA----CGTAATAACAAAACCCATT---C-TACATGTCTGATCAACATT-CAGTGTACCACATTTATATCAATTACATAAACAAGAC----A----TTTTAAGCATTATATAATATTAAATACAGGTGCAACTACATACTTA-----AT--------------ATTTAAATGAAATTGTATCAAATAGGGT-----AGTTAGCCCCAATACCTGACATGTTTATATACCAGGGCATGTTATTGGTTATAAGCTGTCAC-CATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTCACATTTTATTGTGATTGTT----TTTTATGTATta
gi|6 : TGGAGATGTTACGGTGGAAAATATTAATATAGATACCAAATTCACTTGTATTTAACAACAGAGCAAAGTGTCATGTCATAACTAAAACAAGGAATT-GCAACACCTAGACCACAGGTCCTTTGTTCATGGGGCTTGCTGCATGGCC-----TCTAA---C----------------------TTG-------------------GGGTTTGTCCCGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGCGATATTCCTCTGTGAGGA-AAATTG--TATT--GTACAATATTTAAGT-GTG--TCATGTTAACAGT---GGCTCTTTTTAAATGAGTCATC-AAAACATGCACGACATtg
gi|7 : AG--TGTCTGG-TGGTGGCTGGAGATGTTACTGTGGAAAATTTTAATATAGGCAACAAATTCACTTATATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAATT-GGAACACCAAGAGCATGGGCCCATTGTTCAGGACACCTGCTGTATGACC-----TCTAA---C----------------------T---------------------------GTTCTGGCACTACATAA-TAAATACAGCCTAATACATGCATCTGAGGTATTCTGTCATGAGGA-AAATTGGCTGTCAGGTAC-ATATTCAAGT-TTG--TCATGTTAACAGT---TGCTCTTTTCAATTGAGCCACCGAAAACATGCATGACATTGGACATTCTGAGGCCTacaggtcgagacaacaacggatatattggacattctgaggc
gi|8 : CATATTCT--ATTCTGTAAATGGTATACAATATA----CATAATAACGAAACCCATT---G-TACATGTCTGATCAACATC-CATTGTACCACATTCATATGATTCACACAAACAATATC-TTAAGACTTTTAAGCACTGTAACATATTGAATA---GTGCAAATACATAGATATCTG-ATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTAAGCTCCAATACCAGACATGTTTATGTACCGGGGTAT-------GTTATAAGCCGTCA
gi|9 : ttggcctgtatctcattaacatATATTTT--GCTCTGTTAATGATATA-----TA----CGTAATACCGAATCCCATT---G-TACATGTTTGATTAACATG-AATTGTACCA---------CGTTCACATAAACAAGAC----A----TTTTAAGCATTGTACCATATTGAATACCGGTGCAAATATGTACTTGCCT-GATTTAGGCAAGCTTAGATTTCAATGAAATTGTATCAAGTATGGT-----AGTTCGTTCCAATACCGGACATGTTTATGTATCGAGGTAT-------GTTGTAAG
Alignments
lowQualScore : 11111 1111 55555555 1 1111111 1 111 3333333 1 1 888888888888888888888888888888888888888888888888
lowQualScore : 1 77 1 22222 0000 2 888 5 5 44444444 1 1 55 1 7777 1 8888888 7 3 1 5 5 777 1 0 3 8 1 8888888 0 1 1 1 1 99 1 4 1 3 6 0 777 333333333333333333333333333333333333333333333333 2 5 0 8 5 1 0 1 5 0 22 5 5 66 888 22 9 0 0
lowQualScore : . .. . ..... .... . ... . . ........ . . .. . .... . ....... . . . . . ... . . . . . ....... . . . . . .. . . . . . . ... ................................................ . . . . . . . . . . .. . . .. ... .. . . .
lowQualScore : 7 99 9 55555 6666 2 888 0 7 22222222 0 7 00 3 7777 0 6666666 3 3 0 2 2 555 0 2 2 8 4 8888888 0 0 0 2 0 22 0 3 0 3 7 1 777 333333333333333333333333333333333333333333333333 3 0 3 4 0 3 7 4 7 7 11 7 0 99 888 11 4 2 8
consensus : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
Reference ( family-4425 ) : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTANGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
gi|1 : TTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TATATACGTTATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCGT-AGGGCTTTAAAGCACTTTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATT-AGGCAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTC
gi|1 : ACAATGGAAAGTTGACAG--TGTCGGGGTGGTGTCTAGAGATGTTACGGTGGAACATATTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAATTT-GGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACTTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAG-------CATGCATCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACAGAGTAATCG-AAACATGCACGAAATTGGACATTCTGAGGCCTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaatggaaagttgacagtgtcggggtggtgtctagagatgttacggtggaacatattaatatagataacaaattcacttgtattgaacaaaagagcaaagtgtcttgtcataactaaataaaggaatttggaacaccaagaccacgggcccattgtttaaaacacctgctgtaagacttctaacttggagtttgtcctggtactacataaataaatacagcatgcatctgaggtattccgccgtgaggaaaattggctgtcaggtacacattcaagtttgtcatgttaacagtggctcttttcaacagagtaatcgaaacatgcacgaaattggacattctgaggccta
gi|10 : ttgttcgctccccatctccatatgctgttctgtaaatggtatatatatacgttataacgaaacccattgtacatgtctgatcaacattcattgtaccacattcatatcattcacacaaacaaaaccgtagggctttaaagcactttaccatattgaatacaggtgcaaatacgtacttatctggattaggcaagtttagatttaaatgaaattgtataaagtagggtaggacagttcgctccaataccggacatgtttatgtaccggggtatgttataagctgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATATCATATTTAAAAAAAGACA-TT-GGATCATCAATATCACAGGACCATTGTTCAGGGCATCTGCTGGCTGACCTCTAA---TGTCTTACCGCTAATGTCGAAAATTG-------------------GAATTTGCCCTGGTACTTCATGTATAA-TACAGCGCAA-ACACTCATC--------------ACGAGGG-GAATTAGCTGT------------TCAATT-TTG--CCATGTTACCAAT---GACGCTTTTCAATAGAGTCATCGAAAACATGCAAGACA
gi|11 : CCCATTGTTCTGTGCATCTGCTAGCTGACCTCTAATTTC----------------------TTGCTAGTGATGTCGAAAATTTGAATTTGCCCTGGTACTTCATGTATAA-TATAGCGAAA-ACGTGCATC--------------ACGAGGACAAACAGG-TGTCATCGAT-ACATTCAAAT-TTG--CCATGTTAACAATCATGACACTTTTCAATCGAGTCATCAAAAACATGCAAGACAT---ATATATTGAGACaataggttgacacaataacggatctaatttgtgtatgctg
gi|12 : aTTTGCTCGCTCCCCATCTCCATATTTTAAGTCCTG-----GGTA-A-----TT----TGTATT--CCAA---CATT---GACGCGTATCTCATTAACATCACATTATaacagcggatctattggacatcctg
gi|12 : tcgagagataatgcaggCACATTAT--GTTCTGTTAGTGGTATA-----TA----CGTATTAACGAAGCCCATT---G-TGCATGTCTGATCAACATT-CATTGTACCACATTCATATGATTCACACAAACAAGAC--------CTTTTAAGCACTGT-CGTTATTGAATACAGGTGCgttctgttagtggtatatacgtattaacgaagcccattgtgcatgtctgatcaacattcattgtaccacattcatatgattcacacaaacaagaccttttaagcactgtcgttattgaatacaggtgc
gi|13 : tcgagagataatgcaggtttgctcgctccccatctccatattttaagtcctgggtaatttgtattccaacattgacgcgtatctcattaacatTTAGATTT-CAATTA---AATTGTATCAAGTATTTGAGGAGTGCCTGAAAAATAAAATCATATTTAAATGTGATTGTGTTT--TTTATGTATGGGCTGACATAAAATCACAGC-GAAGGTTAAACAATAAATGAAAGAATAGATGAACAGAATTGAA
gi|14 : AGTGTTGCATCATGTTGACAGT---GGCTCTTTTCAATCGAGTCATCGAAAACACGCATGACAT
gi|15 : agaagaatttgttattgtgtggtgtttTATGTGTGGACTGAAATAAAATCAA-GACGAAGTTTAAATAATAAGTGGAGAAACAGGTGAGCAGGATGAAAACTTGGCAAATTATTGGGA----GGTTGGTGATGGTATGATGGGACATacaggtcgagacaacaaccaacctttagaacactatgaggccta
gi|16 : aTTGTTCGCTCCC-ATCTCCATATGAT--TTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCAATACCG-GACATGTTT
gi|17 : TGTTTGCTTCCCATCTCCATATT
gi|2 : TTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCAT-AGGGCTTTAAAGCACTTTACCATATTAAATACAGGTGCAAATACGTACTTATCTGGATTTAGACAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATTGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGTTGACATAAA------GA-GTAGTATAAACAATAAGTGTAGGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTAGAGATGTTACGATGGAACATTTTAATATAGCTAACAAATTCATTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAA-TTTGGAAC------ACCAAGA--CCAC------GGGC----------------CCAT---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAAGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTGC-ACATTCAAGT-T------ATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGGCATTGGACATTCTGAGACTTAtcaagtcctgggcaatttgcatcccaaca
gi|3 : CCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTACATTTGTATTTAGCTACTTGAGCCACGCATTCTTA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGCTGACATAA----A--GA-GTAGTATAATTAATAAGTGAAAGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGTGTGGTGGCTAGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGGAAAGTGTCTTGTCATAAATAAATAAAGGAATTT-GGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGACATTGGACATTCTGAGGCCTg
gi|4 : TATCTGGGTT-AGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGTTAGGGCAGTTTGCTCCAATACCAGACATGTTTATGTACC-GGGTAT-------GTTAGAAGCTGTCAC
gi|4 : ATCAATAAAATGGACATTTGACAG--TGTTTGGGTGGTGGCTAGAGATGTTACGGTGGAA-ATTTTAATATAGATAACAAACTCACTTGTATTGAACAAAAA---AAAATGTCATGTCATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaataaaatggacatttgacagtgtttgggtggtggctagagatgttacggtggaaattttaatatagataacaaactcacttgtattgaacaaaaaaaaatgtcatgtcatta
gi|5 : tatctgggttaggcaagtttagatttaaatgaaattgtatcaagtaggttagggcagtttgctccaataccagacatgtttatgtaccgggtatgttagaagctgtcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-----TA----CGTAATAACAAAACCCATT---C-TACATGTCTGATCAACATT-CAGTGTACCACATTTATATCAATTACATAAACAAGAC----A----TTTTAAGCATTATATAATATTAAATACAGGTGCAACTACATACTTA-----AT--------------ATTTAAATGAAATTGTATCAAATAGGGT-----AGTTAGCCCCAATACCTGACATGTTTATATACCAGGGCATGTTATTGGTTATAAGCTGTCAC-CATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTCACATTTTATTGTGATTGTT----TTTTATGTATta
gi|6 : TGGAGATGTTACGGTGGAAAATATTAATATAGATACCAAATTCACTTGTATTTAACAACAGAGCAAAGTGTCATGTCATAACTAAAACAAGGAA-TT-GCAACACCTAGACCACAGGTCCTTTGTTCATGGGGCTTGCTGCATGGCCTCTAA---C----------------------TTG-------------------GGGTTTGTCCCGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGCGATATTCCTCTGTGAGGA-AAATTG--TATT--GTACAATATTTAAGT-GTG--TCATGTTAACAGT---GGCTCTTTTTAAATGAGTCATC-AAAACATGCACGACATtg
gi|7 : AG--TGTCTGG-TGGTGGCTGGAGATGTTACTGTGGAAAATTTTAATATAGGCAACAAATTCACTTATATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGAGCATGGGCCCATTGTTCAGGACACCTGCTGTATGACCTCTAA---C-------------------------------------------------TGTTCTGGCACTACAT-AATAAATACAGCCTAATACATGCATCTGAGGTATTCTGTCATGAGGA-AAATTGGCTGTCAGGTAC-ATATTCAAGT-TTG--TCATGTTAACAGT---TGCTCTTTTCAATTGAGCCACCGAAAACATGCATGACATTGGACATTCTGAGGCCTacaggtcgagacaacaacggatatattggacattctgaggc
gi|8 : CATATTCT--ATTCTGTAAATGGTATACAATATA----CATAATAACGAAACCCATT---G-TACATGTCTGATCAACATC-CATTGTACCACATTCATATGATTCACACAAACAATATC-TTAAGACTTTTAAGCACTGTAACATATTGAATA---GTGCAAATACATAGATATCTG-ATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTAAGCTCCAATACCAGACATGTTTATGTACCGGGGTAT-------GTTATAAGCCGTCA
gi|9 : ttggcctgtatctcattaacatATATTTT--GCTCTGTTAATGATATA-----TA----CGTAATACCGAATCCCATT---G-TACATGTTTGATTAACATG-AATTGTACCA---------CGTTCACATAAACAAGAC----A----TTTTAAGCATTGTACCATATTGAATACCGGTGCAAATATGTACTTGCCT-GATTTAGGCAAGCTTAGATTTCAATGAAATTGTATCAAGTATGGT-----AGTTCGTTCCAATACCGGACATGTTTATGTATCGAGGTAT-------GTTGTAAG
Alignments
lowQualScore : 11111 1111 55555555 1 1111111 1 111 3333333 1 1 888888888888888888888888888888888888888888888888
lowQualScore : 1 77 1 22222 0000 2 888 5 5 44444444 1 1 55 1 7777 1 8888888 7 3 1 5 5 777 1 0 3 8 1 8888888 0 1 1 1 1 99 1 4 1 3 6 5 0 3 333333333333333333333333333333333333333333333333 2 5 0 8 5 1 0 1 5 0 22 5 5 66 888 22 9 0 0
lowQualScore : . .. . ..... .... . ... . . ........ . . .. . .... . ....... . . . . . ... . . . . . ....... . . . . . .. . . . . . . . . ................................................ . . . . . . . . . . .. . . .. ... .. . . .
lowQualScore : 7 99 9 55555 6666 2 888 0 7 22222222 0 7 00 3 7777 0 6666666 3 3 0 2 2 555 0 2 2 8 4 8888888 0 0 0 2 0 22 0 3 0 3 7 2 1 4 333333333333333333333333333333333333333333333333 3 0 3 4 0 3 7 4 7 7 11 7 0 99 888 11 4 2 8
consensus : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
Reference ( family-4425 ) : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
gi|1 : TTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TATATACGTTATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCGT-AGGGCTTTAAAGCACTTTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATT-AGGCAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTC
gi|1 : ACAATGGAAAGTTGACAG--TGTCGGGGTGGTGTCTAGAGATGTTACGGTGGAACATATTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAATTT-GGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACTTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAG-------CATGCATCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACAGAGTAATCG-AAACATGCACGAAATTGGACATTCTGAGGCCTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaatggaaagttgacagtgtcggggtggtgtctagagatgttacggtggaacatattaatatagataacaaattcacttgtattgaacaaaagagcaaagtgtcttgtcataactaaataaaggaatttggaacaccaagaccacgggcccattgtttaaaacacctgctgtaagacttctaacttggagtttgtcctggtactacataaataaatacagcatgcatctgaggtattccgccgtgaggaaaattggctgtcaggtacacattcaagtttgtcatgttaacagtggctcttttcaacagagtaatcgaaacatgcacgaaattggacattctgaggccta
gi|10 : ttgttcgctccccatctccatatgctgttctgtaaatggtatatatatacgttataacgaaacccattgtacatgtctgatcaacattcattgtaccacattcatatcattcacacaaacaaaaccgtagggctttaaagcactttaccatattgaatacaggtgcaaatacgtacttatctggattaggcaagtttagatttaaatgaaattgtataaagtagggtaggacagttcgctccaataccggacatgtttatgtaccggggtatgttataagctgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATATCATATTTAAAAAAAGACA-TT-GGATCATCAATATCACAGGACCATTGTTCAGGGCATCTGCTGGCTGACCTCTAA---TGTCTTACCGCTAATGTCGAAAATTG-------------------GAATTTGCCCTGGTACTTCATGTATAA-TACAGCGCAA-ACACTCATC--------------ACGAGGG-GAATTAGCTGT------------TCAATT-TTG--CCATGTTACCAAT---GACGCTTTTCAATAGAGTCATCGAAAACATGCAAGACA
gi|11 : CCCATTGTTCTGTGCATCTGCTAGCTGACCTCTAATTTC----------------------TTGCTAGTGATGTCGAAAATTTGAATTTGCCCTGGTACTTCATGTATAA-TATAGCGAAA-ACGTGCATC--------------ACGAGGACAAACAGG-TGTCATCGAT-ACATTCAAAT-TTG--CCATGTTAACAATCATGACACTTTTCAATCGAGTCATCAAAAACATGCAAGACAT---ATATATTGAGACaataggttgacacaataacggatctaatttgtgtatgctg
gi|12 : aTTTGCTCGCTCCCCATCTCCATATTTTAAGTCCTG-----GGTA-A-----TT----TGTATT--CCAA---CATT---GACGCGTATCTCATTAACATCACATTATaacagcggatctattggacatcctg
gi|12 : tcgagagataatgcaggCACATTAT--GTTCTGTTAGTGGTATA-----TA----CGTATTAACGAAGCCCATT---G-TGCATGTCTGATCAACATT-CATTGTACCACATTCATATGATTCACACAAACAAGAC--------CTTTTAAGCACTGT-CGTTATTGAATACAGGTGCgttctgttagtggtatatacgtattaacgaagcccattgtgcatgtctgatcaacattcattgtaccacattcatatgattcacacaaacaagaccttttaagcactgtcgttattgaatacaggtgc
gi|13 : tcgagagataatgcaggtttgctcgctccccatctccatattttaagtcctgggtaatttgtattccaacattgacgcgtatctcattaacatTTAGATTT-CAATTA---AATTGTATCAAGTATTTGAGGAGTGCCTGAAAAATAAAATCATATTTAAATGTGATTGTGTTT--TTTATGTATGGGCTGACATAAAATCACAGC-GAAGGTTAAACAATAAATGAAAGAATAGATGAACAGAATTGAA
gi|14 : AGTGTTGCATCATGTTGACAGT---GGCTCTTTTCAATCGAGTCATCGAAAACACGCATGACAT
gi|15 : agaagaatttgttattgtgtggtgtttTATGTGTGGACTGAAATAAAATCAA-GACGAAGTTTAAATAATAAGTGGAGAAACAGGTGAGCAGGATGAAAACTTGGCAAATTATTGGGA----GGTTGGTGATGGTATGATGGGACATacaggtcgagacaacaaccaacctttagaacactatgaggccta
gi|16 : aTTGTTCGCTCCC-ATCTCCATATGAT--TTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCAATACCG-GACATGTTT
gi|17 : TGTTTGCTTCCCATCTCCATATT
gi|2 : TTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCAT-AGGGCTTTAAAGCACTTTACCATATTAAATACAGGTGCAAATACGTACTTATCTGGATTTAGACAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATTGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGTTGACATAAA------GA-GTAGTATAAACAATAAGTGTAGGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTAGAGATGTTACGATGGAACATTTTAATATAGCTAACAAATTCATTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAA-TTTGGAACACCAAGA--------CCAC------GGGC-CC------AT------------C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAAGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTGC-ACATTCAAGT-T------ATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGGCATTGGACATTCTGAGACTTAtcaagtcctgggcaatttgcatcccaaca
gi|3 : CCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTACATTTGTATTTAGCTACTTGAGCCACGCATTCTTA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGCTGACATAA----A--GA-GTAGTATAATTAATAAGTGAAAGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGTGTGGTGGCTAGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGGAAAGTGTCTTGTCATAAATAAATAAAGGAATTT-GGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGACATTGGACATTCTGAGGCCTg
gi|4 : TATCTGGGTT-AGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGTTAGGGCAGTTTGCTCCAATACCAGACATGTTTATGTACC-GGGTAT-------GTTAGAAGCTGTCAC
gi|4 : ATCAATAAAATGGACATTTGACAG--TGTTTGGGTGGTGGCTAGAGATGTTACGGTGGAA-ATTTTAATATAGATAACAAACTCACTTGTATTGAACAAAAA---AAAATGTCATGTCATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaataaaatggacatttgacagtgtttgggtggtggctagagatgttacggtggaaattttaatatagataacaaactcacttgtattgaacaaaaaaaaatgtcatgtcatta
gi|5 : tatctgggttaggcaagtttagatttaaatgaaattgtatcaagtaggttagggcagtttgctccaataccagacatgtttatgtaccgggtatgttagaagctgtcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-----TA----CGTAATAACAAAACCCATT---C-TACATGTCTGATCAACATT-CAGTGTACCACATTTATATCAATTACATAAACAAGAC----A----TTTTAAGCATTATATAATATTAAATACAGGTGCAACTACATACTTA-----AT--------------ATTTAAATGAAATTGTATCAAATAGGGT-----AGTTAGCCCCAATACCTGACATGTTTATATACCAGGGCATGTTATTGGTTATAAGCTGTCAC-CATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTCACATTTTATTGTGATTGTT----TTTTATGTATta
gi|6 : TGGAGATGTTACGGTGGAAAATATTAATATAGATACCAAATTCACTTGTATTTAACAACAGAGCAAAGTGTCATGTCATAACTAAAACAAGGAA-TT-GCAACACCTAGACCACAGGTCCTTTGTTCATGGGGCTTGCTGCATGGCCTCTAA---C----------------------TTG-------------------GGGTTTGTCCCGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGCGATATTCCTCTGTGAGGA-AAATTG--TATT--GTACAATATTTAAGT-GTG--TCATGTTAACAGT---GGCTCTTTTTAAATGAGTCATC-AAAACATGCACGACATtg
gi|7 : AG--TGTCTGG-TGGTGGCTGGAGATGTTACTGTGGAAAATTTTAATATAGGCAACAAATTCACTTATATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGAGCATGGGCCCATTGTTCAGGACACCTGCTGTATGACCTCTAA---C-------------------------------------------------TGTTCTGGCACTACAT-AATAAATACAGCCTAATACATGCATCTGAGGTATTCTGTCATGAGGA-AAATTGGCTGTCAGGTAC-ATATTCAAGT-TTG--TCATGTTAACAGT---TGCTCTTTTCAATTGAGCCACCGAAAACATGCATGACATTGGACATTCTGAGGCCTacaggtcgagacaacaacggatatattggacattctgaggc
gi|8 : CATATTCT--ATTCTGTAAATGGTATACAATATA----CATAATAACGAAACCCATT---G-TACATGTCTGATCAACATC-CATTGTACCACATTCATATGATTCACACAAACAATATC-TTAAGACTTTTAAGCACTGTAACATATTGAATA---GTGCAAATACATAGATATCTG-ATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTAAGCTCCAATACCAGACATGTTTATGTACCGGGGTAT-------GTTATAAGCCGTCA
gi|9 : ttggcctgtatctcattaacatATATTTT--GCTCTGTTAATGATATA-----TA----CGTAATACCGAATCCCATT---G-TACATGTTTGATTAACATG-AATTGTACCA---------CGTTCACATAAACAAGAC----A----TTTTAAGCATTGTACCATATTGAATACCGGTGCAAATATGTACTTGCCT-GATTTAGGCAAGCTTAGATTTCAATGAAATTGTATCAAGTATGGT-----AGTTCGTTCCAATACCGGACATGTTTATGTATCGAGGTAT-------GTTGTAAG
blockSeqs : T AA T CAATA . G ACC A A CATAGGG G T GG T AGGA C GTTATTG A N G G G . G T C T AATCAA C A T G G AT A C A T T T G TGTCTTACCGCTAATGTCGAAAATTG G A T T A C C AT A G CA CAT TA A
blockSeqs : A . A . . A . . . CTTAAGA T T GG T AGGG T . . . N G G . G T C A A . T A T G . G C T . . C G TTTCTTGCTAGTGATGTCGAAAATTT G A T T A C . AG . . . . TC A
blockSeqs : A . A . . A . . . A A T G T AGGG A . N N . T . . A A . T A A C . G C T . . C T CTTG A A T T C T . AG . . . . TC A
blockSeqs : C . A . . A . . . A G C G . . A . T C . G A A . . G C CTTG A A T T A T . AG . . . . CG A
blockSeqs : C . T . . A . . . . G . . . . C . A . . A A . . . T CTTG A . . . . T . . . . . . CG A
blockSeqs : T . . . . T . . . . . A . C . . . . . T . . . . . . AT .
blockSeqs : . . . . . . . . TT .
blockSeqCons : ****
originalCons : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
finalCons : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
Alignments
lowQualScore : 11111 1111 55555555 1 1111111 1 111 3333333 1 1 888888888888888888888888888888888888888888888888
lowQualScore : 1 77 1 22222 0000 2 888 5 5 44444444 1 1 55 1 7777 1 8888888 7 3 1 5 5 777 1 0 3 8 1 8888888 0 1 1 1 1 99 1 4 1 3 6 5 0 3 333333333333333333333333333333333333333333333333 2 5 0 8 5 1 0 1 5 0 22 5 5 66 888 22 9 0 0
lowQualScore : . .. . ..... .... . ... . . ........ . . .. . .... . ....... . . . . . ... . . . . . ....... . . . . . .. . . . . . . . . ................................................ . . . . . . . . . . .. . . .. ... .. . . .
lowQualScore : 7 99 9 55555 6666 2 888 0 7 22222222 0 7 00 3 7777 0 6666666 3 3 0 2 2 555 0 2 2 8 4 8888888 0 0 0 2 0 22 0 3 0 3 7 2 1 4 333333333333333333333333333333333333333333333333 3 0 3 4 0 3 7 4 7 7 11 7 0 99 888 11 4 2 8
consensus : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
Reference ( family-4425 ) : TTTGTTCGCTCCCCATCTCCATATTCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAGACC-T-AGGGCTTTTAAGCACTGTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATNGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTNTAGTGTGATTGTTTTTCTTTTATGTGTGGGCTGACATAAAATCA--GA-GNAGTNTAAACAATAAGTGAAGGAACAGATGAACANAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTGGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCNTGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGACCACGGGCCCATTGTTCAGGGCACCTGCTGTATGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAGGTATTCCGCCGCGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACNGAGTCATCGAAAACATGCACGACATTGGACATTCTGAGGCCTA
gi|1 : TTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TATATACGTTATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCGT-AGGGCTTTAAAGCACTTTACCATATTGAATACAGGTGCAAATACGTACTTATCTGGATT-AGGCAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTC
gi|1 : ACAATGGAAAGTTGACAG--TGTCGGGGTGGTGTCTAGAGATGTTACGGTGGAACATATTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAATTT-GGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACTTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAG-------CATGCATCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACAGAGTAATCG-AAACATGCACGAAATTGGACATTCTGAGGCCTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaatggaaagttgacagtgtcggggtggtgtctagagatgttacggtggaacatattaatatagataacaaattcacttgtattgaacaaaagagcaaagtgtcttgtcataactaaataaaggaatttggaacaccaagaccacgggcccattgtttaaaacacctgctgtaagacttctaacttggagtttgtcctggtactacataaataaatacagcatgcatctgaggtattccgccgtgaggaaaattggctgtcaggtacacattcaagtttgtcatgttaacagtggctcttttcaacagagtaatcgaaacatgcacgaaattggacattctgaggccta
gi|10 : ttgttcgctccccatctccatatgctgttctgtaaatggtatatatatacgttataacgaaacccattgtacatgtctgatcaacattcattgtaccacattcatatcattcacacaaacaaaaccgtagggctttaaagcactttaccatattgaatacaggtgcaaatacgtacttatctggattaggcaagtttagatttaaatgaaattgtataaagtagggtaggacagttcgctccaataccggacatgtttatgtaccggggtatgttataagctgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATATCATATTTAAAAAAAGACA-TT-GGATCATCAATATCACAGGACCATTGTTCAGGGCATCTGCTGGCTGACCTCTAA---TGTCTTACCGCTAATGTCGAAAATTG-------------------GAATTTGCCCTGGTACTTCATGTATAA-TACAGCGCAA-ACACTCATC--------------ACGAGGG-GAATTAGCTGT------------TCAATT-TTG--CCATGTTACCAAT---GACGCTTTTCAATAGAGTCATCGAAAACATGCAAGACA
gi|11 : CCCATTGTTCTGTGCATCTGCTAGCTGACCTCTAATTTC----------------------TTGCTAGTGATGTCGAAAATTTGAATTTGCCCTGGTACTTCATGTATAA-TATAGCGAAA-ACGTGCATC--------------ACGAGGACAAACAGG-TGTCATCGAT-ACATTCAAAT-TTG--CCATGTTAACAATCATGACACTTTTCAATCGAGTCATCAAAAACATGCAAGACAT---ATATATTGAGACaataggttgacacaataacggatctaatttgtgtatgctg
gi|12 : aTTTGCTCGCTCCCCATCTCCATATTTTAAGTCCTG-----GGTA-A-----TT----TGTATT--CCAA---CATT---GACGCGTATCTCATTAACATCACATTATaacagcggatctattggacatcctg
gi|12 : tcgagagataatgcaggCACATTAT--GTTCTGTTAGTGGTATA-----TA----CGTATTAACGAAGCCCATT---G-TGCATGTCTGATCAACATT-CATTGTACCACATTCATATGATTCACACAAACAAGAC--------CTTTTAAGCACTGT-CGTTATTGAATACAGGTGCgttctgttagtggtatatacgtattaacgaagcccattgtgcatgtctgatcaacattcattgtaccacattcatatgattcacacaaacaagaccttttaagcactgtcgttattgaatacaggtgc
gi|13 : tcgagagataatgcaggtttgctcgctccccatctccatattttaagtcctgggtaatttgtattccaacattgacgcgtatctcattaacatTTAGATTT-CAATTA---AATTGTATCAAGTATTTGAGGAGTGCCTGAAAAATAAAATCATATTTAAATGTGATTGTGTTT--TTTATGTATGGGCTGACATAAAATCACAGC-GAAGGTTAAACAATAAATGAAAGAATAGATGAACAGAATTGAA
gi|14 : AGTGTTGCATCATGTTGACAGT---GGCTCTTTTCAATCGAGTCATCGAAAACACGCATGACAT
gi|15 : agaagaatttgttattgtgtggtgtttTATGTGTGGACTGAAATAAAATCAA-GACGAAGTTTAAATAATAAGTGGAGAAACAGGTGAGCAGGATGAAAACTTGGCAAATTATTGGGA----GGTTGGTGATGGTATGATGGGACATacaggtcgagacaacaaccaacctttagaacactatgaggccta
gi|16 : aTTGTTCGCTCCC-ATCTCCATATGAT--TTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCAATACCG-GACATGTTT
gi|17 : TGTTTGCTTCCCATCTCCATATT
gi|2 : TTTGTTCGCTCCCCATCTCCATATGCT--GTTCTGTAAATGGTATA-----TA----CGTAATAACGAAACCCATT---G-TACATGTCTGATCAACATT-CATTGTACCACATTCATATCATTCACACAAACAAAACCAT-AGGGCTTTAAAGCACTTTACCATATTAAATACAGGTGCAAATACGTACTTATCTGGATTTAGACAAGTTTAGATTTAAATGAAATTGTATAAAGTAGGGTAGGACAGTTCGCTCCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGCTCAAAAGATCAATTGACGAAATTGACATTACATTTGCATTTAGCTACTTGAGCCAAGCATTCTAA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGTTGACATAAA------GA-GTAGTATAAACAATAAGTGTAGGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGGGTGGTGGCTAGAGATGTTACGATGGAACATTTTAATATAGCTAACAAATTCATTTGTATTGAACAAAAGAGCAAAGTGTCTTGTCATAACTAAATAAAGGAA-TTTGGAACACCAAGA--------CCAC------GGGC-CC------AT------------C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCATCTGAAGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTGC-ACATTCAAGT-T------ATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGGCATTGGACATTCTGAGACTTAtcaagtcctgggcaatttgcatcccaaca
gi|3 : CCAATACCGGACATGTTTATGTACCGGGGTAT-------GTTATAAGCTGTCACAAATATA-TTAGTAAATTCATATCCCCGTTCAAAAGATCAATGGACAAAATTGACATTACATTTGTATTTAGCTACTTGAGCCACGCATTCTTA---TGCCTAAAAAGTAACATCATGTTGTAGTGTGATTGTTTTTCTTTTATGTGAGGGCTGACATAA----A--GA-GTAGTATAATTAATAAGTGAAAGAACAGATGAACACAATGGAAAGTTGACAG--TGTCGGTGTGGTGGCTAGAGATGTTACGGTGGAACATTTTAATATAGATAACAAATTCACTTGTATTGAACAAAAGAGGAAAGTGTCTTGTCATAAATAAATAAAGGAATTT-GGAACACCAAGACCACGGGCCCATTGTTTAAAACACCTGCTGTAAGACCTCTAA---C----------------------TTG-------------------GAGTTTGTCCTGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGAGGTATTCCGCCGTGAGGA-AAATTGGCTGTCAGGTAC-ACATTCAAGT-TTG--TCATGTTAACAGT---GGCTCTTTTCAACGGAGTAATCG-AAACATGCACGACATTGGACATTCTGAGGCCTg
gi|4 : TATCTGGGTT-AGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGTTAGGGCAGTTTGCTCCAATACCAGACATGTTTATGTACC-GGGTAT-------GTTAGAAGCTGTCAC
gi|4 : ATCAATAAAATGGACATTTGACAG--TGTTTGGGTGGTGGCTAGAGATGTTACGGTGGAA-ATTTTAATATAGATAACAAACTCACTTGTATTGAACAAAAA---AAAATGTCATGTCATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaataaaatggacatttgacagtgtttgggtggtggctagagatgttacggtggaaattttaatatagataacaaactcacttgtattgaacaaaaaaaaatgtcatgtcatta
gi|5 : tatctgggttaggcaagtttagatttaaatgaaattgtatcaagtaggttagggcagtttgctccaataccagacatgtttatgtaccgggtatgttagaagctgtcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-----TA----CGTAATAACAAAACCCATT---C-TACATGTCTGATCAACATT-CAGTGTACCACATTTATATCAATTACATAAACAAGAC----A----TTTTAAGCATTATATAATATTAAATACAGGTGCAACTACATACTTA-----AT--------------ATTTAAATGAAATTGTATCAAATAGGGT-----AGTTAGCCCCAATACCTGACATGTTTATATACCAGGGCATGTTATTGGTTATAAGCTGTCAC-CATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTCACATTTTATTGTGATTGTT----TTTTATGTATta
gi|6 : TGGAGATGTTACGGTGGAAAATATTAATATAGATACCAAATTCACTTGTATTTAACAACAGAGCAAAGTGTCATGTCATAACTAAAACAAGGAA-TT-GCAACACCTAGACCACAGGTCCTTTGTTCATGGGGCTTGCTGCATGGCCTCTAA---C----------------------TTG-------------------GGGTTTGTCCCGGTACTACATAAATAAATACAGCGTAATACATGCCTCTGCGATATTCCTCTGTGAGGA-AAATTG--TATT--GTACAATATTTAAGT-GTG--TCATGTTAACAGT---GGCTCTTTTTAAATGAGTCATC-AAAACATGCACGACATtg
gi|7 : AG--TGTCTGG-TGGTGGCTGGAGATGTTACTGTGGAAAATTTTAATATAGGCAACAAATTCACTTATATTGAACAAAAGAGCAAAGTGTCATGTCATAACTAAATAAAGGAA-TT-GGAACACCAAGAGCATGGGCCCATTGTTCAGGACACCTGCTGTATGACCTCTAA---C-------------------------------------------------TGTTCTGGCACTACAT-AATAAATACAGCCTAATACATGCATCTGAGGTATTCTGTCATGAGGA-AAATTGGCTGTCAGGTAC-ATATTCAAGT-TTG--TCATGTTAACAGT---TGCTCTTTTCAATTGAGCCACCGAAAACATGCATGACATTGGACATTCTGAGGCCTacaggtcgagacaacaacggatatattggacattctgaggc
gi|8 : CATATTCT--ATTCTGTAAATGGTATACAATATA----CATAATAACGAAACCCATT---G-TACATGTCTGATCAACATC-CATTGTACCACATTCATATGATTCACACAAACAATATC-TTAAGACTTTTAAGCACTGTAACATATTGAATA---GTGCAAATACATAGATATCTG-ATTTAGGCAAGTTTAGATTTAAATGAAATTGTATCAAGTAGGGTAGGGCAGTAAGCTCCAATACCAGACATGTTTATGTACCGGGGTAT-------GTTATAAGCCGTCA
gi|9 : ttggcctgtatctcattaacatATATTTT--GCTCTGTTAATGATATA-----TA----CGTAATACCGAATCCCATT---G-TACATGTTTGATTAACATG-AATTGTACCA---------CGTTCACATAAACAAGAC----A----TTTTAAGCATTGTACCATATTGAATACCGGTGCAAATATGTACTTGCCT-GATTTAGGCAAGCTTAGATTTCAATGAAATTGTATCAAGTATGGT-----AGTTCGTTCCAATACCGGACATGTTTATGTATCGAGGTAT-------GTTGTAAG