lowQualScore : 222222222222222222222222222222222 11111111111111111 11111111111
lowQualScore : 1 333 1 7777 1 11 666666666666666666 22222 000000000000000000000000000000000 111 1 22222 11 1 44444444444444444 1111 33333 111 77777777777777777777777777777777 1 33333 1 6666 11111111111 1 1 1 55
lowQualScore : 0 111 2 5 7777 11 3 77 11 3 5 3 7 000000000000000000 2 1 0 11111 222222222222222222222222222222222 888 7 0 3 2 3 88888 33 5 22222222222222222 8888 3 33333 111 1 5 6666 3 4 2 77777777777777777777777777777777 6 7 6 44444 5 1111 88888888888 7 6 6 7 6 5 6 55 6 6
lowQualScore : . ... . . .... .. . .. .. . . . . .................. . . . ..... ................................. ... . . . . . ..... .. . ................. .... . ..... ... . . .... . . . ................................ . . . ..... . .... ........... . . . . . . . .. . .
lowQualScore : 5 222 0 0 5555 55 3 99 99 6 0 3 0 333333333333333333 2 2 2 22222 333333333333333333333333333333333 333 7 0 5 5 2 00000 88 0 00000000000000000 8888 0 00000 888 0 2 8888 2 5 5 55555555555555555555555555555555 0 0 0 00000 0 0000 00000000000 0 0 0 0 0 0 0 00 0 0
consensus : TTNTTTTC--TTTCTTTTATTTNTCTTGGAAGACTGTTC----CAGTCCCGAATAGCTTGATAAA-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACATGAAAACTGCCAAAACTATGTC-G--------ANTATT--ATAAGAGTGCGTCTTNGAGACTAAAATAAAATTATCAT-T-GGTAAGGCGG-GCACGTA----------TTATTACAAAANAAT-ATGAACNTNGTTT--AN-TC--TCGGTTGTTTTACTCT--TTT--TTCG---TAACATT-TAGCCAACCAAG-ATTACT--GAAATNTGAGACTTTTAAAGNAGTTCTACAACCACAGCCNCNTNCTTATGAAACCTCTGACGACCTAGGANTTGTTTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATT
Reference ( gi|1 ) : TTCTTTT---TTTCTTTTATATGTCTTGGAAGACTGTTCTGGACAGTCCCGAAAAGCTTGATAAACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACTATGTC-G--------AACATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC--------------G-ACACGTA----------TTATTACAAAAAAAT-ATGAACATGGTTT--AT-TC--TCAGTTCTTTTACTCC--TTTCCTTTACTCTGACA-T-TAGTCAACAGAT-ATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAACCACA-A---ATGAA---TCTAACAAC------TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTTTTTGATGCCACTGTTCATATTTAAACAATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|2 : TTTTTCA---TTTCTTATATTTTTCTTGGAAGACTGTTC----CAGTCCCAAATAGCTTGCTGAACGAAGGTATTTAGCATGGAACTATTCTA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCTTGCAA----------------CCCAAAAATATTGATAAA-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCTATGTC-T--------AGTACTTAATAAAAGTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|11 : tctttttaatagctttTTTTCA-TTTCTTTTATTTTTCTTGGAAGACTTATCT----AGTCTGGAACAGCCTTAT--ACTA--GTATTTTAC-CAAAACTA-Ta
gi|8 : ---TTTATTTT---TCTCTTTGAAGACTGT----------CCCGAATAGCTTGATAAGAGACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACTGTGTA-T--------GCTATT--ATAGAAGTGTGTATTGGAAACTAAAATAAA
gi|5 : caTTTTTTTATGTGTCTTGGAAAACTGTTC----CAGTCCCGAATAGCTTGGTAAAAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGAT-GTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACT
gi|4 : tacTTCTTTTTTTTGC---GGAGGACTATTC----CAGTCCCAGAGTGCTTGATAAA--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACTATGTCTGCT------AA------ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATCATTTAGGTAAGGCGG-GCATGTA----------TTATTA-AAATTATT-ATGAACCTTG-TT--ATGTC--TCATTTGTTTTACTC----------TGCTAT--CA-C-TAGCCAACTAAG-AATACTCAGATATCTGAAACTTTTAA
gi|15 : aTTCTAATATGTGTCTTG--AAACTGTTC----CAGACCCGAATAGCTTGttataacaacataattatg
gi|3 : ttcacTCTTTTATATGTCTTGGAAGACTGTTTC---CA-TCTCGAATAGC------------------TGACA---AAGTA---------ATGTACATGAAAACTTCCAAAACTATGTC-G--------ACTATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATATCGGTAAGATGG-ACATTTG----------TTAT--CAAAAAAAT-ATGAACATGGTTTAGAC-TCTGTCAGTTGGTTTACTCT--GTT--TTCA-----ACATT-TATCCAGCAAAA-ATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAG-CACATACTTATGAAACCTCTAACGACCTAGGATTTGTTTca
gi|12 : TCATTTATTTTTCTTGGAAGATATTTC----CATTTTCGAACAGCTTGATAAA
gi|10 : TTTTATTTTTCGCAGAAGACTATTC----CAGACCTGAATTGCTTGATAAA-GAAGACATTTGAAATAaaaactaccaaaattatgcctactat
gi|9 : tCTGTTC----CAGTCCCGAATGGCTTGATAGAAGAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTTATATC-tagataaaataaaattagcatgtatgtaatgcaaaaac
gi|6 : ttttttatatgcatacttgttttcgttcctttactttttCTAAAATAAAATTACC--------------ATGTACATAAGATGAATATTTATTATTAAACAATTATGAACATTGTTT--TG-TC--TTGGTTGTTTTACTCCGGTTTC---------AACATT-TAGCCGACCAAG-ATTAC----AAATTTAAAAta
gi|2 : T-ATGAACTTGCTTT--AG-TC--TCAGTTGTTTTACACT--TTT--TTCA-----ATA-TCTAGTCAGCC-ATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAACCTTC-T---ATGAA---TCTGATAA-------GTTGTTTTGAGtgatctttggtgccatttca
gi|13 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTAACA-T--AGCCAACCAAG-ATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGCCatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|16 : CTGAGACTTTTAAAGAAGTTCTACAACCATAACC
gi|2 : GTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 111 11111 44444444444 222 1111 11 11 55555 4444444 44444444444444444 88888888888888888888888888888888888888888888888888888888888888888888888888888888 22 22222 11 11
lowQualScore : 1 77 1 44 1 7777 1 3 88 3 55 0 4 1 0 000 6 1 66666 1 99 2 4 44 99999999999 88 2 44 111 1 8 1 1 3333 11 2 5 11 11111 88 1 99 1 1 1 0 1 4444444 33333333333333333 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 2 4 3 3 33 77777 88 4 4 2 88
lowQualScore : . .. . .. . .... . . .. . .. . . . . ... . . ..... . .. . . .. ........... .. . .. ... . . . . .... .. . . .. ..... .. . .. . . . . . ....... ................. . ................................................................................ . . . . .. ..... .. . . . ..
lowQualScore : 0 00 0 66 8 1111 4 3 66 6 22 7 4 4 7 000 7 0 77777 7 22 2 6 66 00000000000 55 0 55 222 0 0 0 0 4444 00 8 4 00 99999 88 0 22 0 7 0 8 4 7777777 00000000000000000 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 0 0 00 00000 55 0 0 5 00
consensus : TTGTTTTCA-TTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATC--AT-C--G-GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTT--AGTC--TCAGTTGTTTTACTCCGTT--TTC-----GACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAACCACAT-C-TATGAA---TCTAACGAC-TA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNNNTNNNGNCGNTGTTCGAATTATTTAACACTTTTTCAGGTTCANACTTATATAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
Reference ( family-4205 ) : TTNTTTTC--TTTCTTTTATTTNTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACATGAAAACTGCCAAAACT---ATGTCGANT-----ATT--ATAAGAGTGCGTCTTNGAGACTAAAATAAAATTATC--AT-T--G-GTAAGGCGGGCACGTATTATTACAAAANAA-TATGAACNTNGTTT--ANTC--TCGGTTGTTTTACTCTTTT--TTCG---TAACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGNAGTTCTACAACCACAGCCNCNTNCTTATGAAACCTCTGACGACCTAGGANTTGTTTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCA---TATTT-----------------ATAT------AATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATT
gi|1 : TTCTTTT---TTTCTTTTATATGTCT--TGGAAGACTGTTCTGGACAGTCCC-GAAAAGCTTGATA--A-ACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACT---ATGTCGAAC-----ATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC------------------GACACGTATTATTACAAAAAAA-TATGAACATGGTTT--ATTC--TCAGTTCTTTTACTCCTTTCCTTTACTCTGACA-TTAGTCAACAGATATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAACCACA----AATGAA---TCTAACAAC------TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTTTTTGATGCCACTGTTCA---TATTT-----------------AAAC------AATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|10 : TTTTATTTTTCG--CAGAAGACTATTC----CAGACCT-GAATTGCTTGATA--A-A-GAAGACATTTGAAATA
gi|11 : tTTTTCA-TTTCTTTTATTTTTCT--TGGAAGACTTATC----TAGTCTG-GAACAGCCTTATACTA-------GTATTTTAC-CAAAACTA-Ttagataaaataaaattagcatgtatgtaatgcaaaaac
gi|12 : TCATTTATTTTTCT--TGGAAGATATTTC----CATTTTC-GAACAGCTTGATA--A-A-AAA
gi|13 : ---TAACAT--AGCCAACCAAGATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGCCactaccaaaattatgcctactat
gi|15 : TTCTAATATGTGTCT--TGAAA--CTGTTC----CAGACCC-GAATAGCTTG
gi|16 : ttcacTGAGACTTTTAAAGAAGTTCTACAACCATAACCca
gi|2 : cTTTTCA-TTTCTTATATTTTTCT--TGGAAGACTGTTC----CAGTCCC-AAATAGCTTGCTG--A-ACGAAGGTATTTAGCATGGAACTATTCTA
gi|2 : t-TATGAACTTGCTTT--AGTC--TCAGTTGTTTTACACTTTT--TTC-----AATATCTAGTCAGCCATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAACC---TTC-TATGAA---TCTGA-----TA--AGTTGTTTTGAGATGCCACTGTGCCAGGATATGAATGCAGAATCCAGATGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|3 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTCTTTTATATGTCT--TGGAAGACTGTTT----CCATCTC-GAATAGCT-GACA--A-A-----GTA--------------A-T---------GTACATGAAAACTTCCAAAACT---ATGTCGACT-----ATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATAT-C--G-GTAAGATGGACATTTGTTAT--CAAAAAAA-TATGAACATGGTTTAGACTCTGTCAGTTGGTTTACTCTGTT--TTC-----AACATTTATCCAGCAAAAATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAG-CACATACTTATGAAACCTCTAACGACCTAGGATTTGTTT
gi|4 : TTCTTTTTTTTGC-----GGAGGACTATTC----CAGTCCCAGAGT-GCTTGATA--A-A--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACT---ATGTCTGCT-----A-A--ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATC--AT-TTAG-GTAAGGCGGGCATGTATTATTA-AAATTAT-TATGAACCTTGTTA--TGTC--TCATTTGTTTTACTCTGCT--ATC------AC---TAGCCAACTAAGAATACTCAGATATCTGAAACTTTTAA
gi|5 : aTTTTTTTATGTGTCT--TGGAAAACTGTTC----CAGTCCC-GAATAGCTTGGTA--A-AAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGATGTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACTttataacaacataattatg
gi|6 : tacCTAAAATAAAATTACC--ATGT--ACATAAGATGAATATTTATTATT---AAACAATTATGAACATTGTTT--TGTC--TTGGTTGTTTTACTCCGGT--TTC-----AACATTTAGCCGACCAAGATTAC----AAATTTAAAA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCT--TGCAA------CC----CAA-----AAATA--TTGATA--A-A-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCT---ATGTCTAGT-----ACTTAATAAAAGTtgatctttggtgccatttca
gi|8 : tctttttaatagctttTTTATTTTTCTCTTTGAAGACTGT----------CCC-GAATAGCTTGATA--AGA-GACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACT---GTGTATGCT-----ATT--ATAGAAGTGTGTATTGGAAACTAAAATAAAa
gi|9 : caTTGTTTTC--GTTCCTTTACTTTTT----------CTGTTC----CAGTCCC-GAATGGCTTGATAG-A-A-GAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTT---ATATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT
Alignments
lowQualScore : 11 11111 555555555555 222 11 11 333333333 2222 222 444444444 222 99999999999999999999999 11 22222 11 11
lowQualScore : 5 44 1 7777 1 3 88 3 55 0 4 1 1 1 888 44444 0 99 0 44 444444444444 55 1 111 1 8 1 1 11 11 5 888888888 66 1 99 1 1 1 0 1 8 7777 333 555555555 1 22 22 333 1 1 4444 333 1 1 111 11111111111111111111111 1 1 1 1 66 77777 88 1 1 1 88
lowQualScore : . .. . .... . . .. . .. . . . . . ... ..... . .. . .. ............ .. . ... . . . . .. .. . ......... .. . .. . . . . . . .... ... ......... . .. .. ... . . .... ... . . ... ....................... . . . . .. ..... .. . . . ..
lowQualScore : 7 66 8 1111 4 3 66 6 22 7 4 4 4 4 888 33333 1 22 3 00 555555555555 00 0 222 0 0 0 4 00 00 0 666666666 44 0 22 0 7 0 8 4 0 0000 333 777777777 0 00 00 000 0 0 0000 000 0 0 555 00000000000000000000000 0 0 0 0 55 00000 55 0 0 0 00
consensus : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTTTTC--------AACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CACACCTATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNNNTNNNGNCGNTGTTCGAATTATTTAACACTTTTTCAGGTTCATATTTATACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
Reference ( family-4205 ) : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTTTTC--------GACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CACATCTATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNNNTNNNGNCGNTGTTCGAATTATTTAACACTTTTTCAGGTTCANACTTATATAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
gi|1 : TTCTTTT---TTTCTTTTATATGTCT--TGGAAGACTGTTCTGGACAGTCCC-GAAAAGCTTGATA--A-ACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACT---ATGTCGAAC-----ATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC-------------------GACACGTATTATTACAAAAAAA-TATGAACATGGTTTAT--TC--TCAGTTCTTTTACTCC-TTTCCTTTACTCTGACA-TTAGTCAACAGATATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAAC-CACA--AATGAA---TCTAACAA-C-----TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTTTTTGATGCCACTGTTCA---TATTTAA-----------------------ACAATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|10 : TTTTATTTTTCG--CAGAAGACTATTC----CAGACCT-GAATTGCTTGATA--A-A-GAAGACATTTGAAATA
gi|11 : tTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTTATC----TAGTCTG-GAACAGCCTTATACTA-------GTATTTTAC-CAAAACTA-Ttagataaaataaaattagcatgtatgtaatgcaaaaac
gi|12 : TCATTTATTTTTCT--TGGAAGATATTTC----CATTTTC-GAACAGCTTGATA--A-A-AAA
gi|12 : AAAACTACCAAAATT---ATGCCTACT-----ATactaccaaaattatgcctactat
gi|13 : tcatttatttttcttggaagatatttccattttcgaacagcttgataaaTAGCCAACCAAGATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGC-C
gi|15 : taacaTTC-ACTTCTAATATGTGTCT--TGAAA--CTGTTC----CAGACCC-GAATAGCTTG
gi|16 : TGAGACTTTTAAAGAAGTTCTACAACCATAAC-Cca
gi|2 : cTTTTC-ATTTCTTATATTTTTCT--TGGAAGACTGTTC----CAGTCCC-AAATAGCTTGCTG--A-ACGAAGGTATTTAGCATGGAACTATTCTA
gi|2 : t-TATGAACTTGCTTTAG--TC--TCAGTTGTTTTACACTTTTTTC--------AATATCTAGTCAGCCATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAAC-CT--TCTATGAA---TCTGA-----TA--AGTTGTTTTGAGATGCCACTGTGCCAGGATATGAATGCAGAATCCAGATGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|3 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTCTTTTATATGTCT--TGGAAGACTGTTT----CCATCTC-GAATAGCT-GACA--A-A-----GTA--------------A-T---------GTACATGAAAACTTCCAAAACT---ATGTCGACT-----ATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATATC--G---GTAAGATGGACATTTGTTAT--CAAAAAAA-TATGAACATGGTTTAGACTCTGTCAGTTGGTTTACTCTGTTTTC--------AACATTTATCCAGCAAAAATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAGCACATACTTATGAAACCTCTAACGACCTAGGATTTGTTT
gi|4 : TTCTTTT-TTTTGC----GGAGGACTATTC----CAGTCCCAGAGT-GCTTGATA--A-A--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACT---ATGTCTGCT-----A-A--ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATCAT--TTAG---GTAAGGCGGGCATGTATTATTA-AAATTAT-TATGAACCTTGTTATG--TC--TCATTTGTTTTACTCTGCTATC---------AC---TAGCCAACTAAGAATACTCAGATATCTGAAACTTTTAA
gi|5 : a-ACTTTTTTTATGTGTCT--TGGAAAACTGTTC----CAGTCCC-GAATAGCTTGGTA--A-AAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGATGTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACTttataacaacataattatg
gi|6 : tCTAAAATAAAATTACCAT-----GTACATAAGATGAATATTTATTATT---AAACAATTATGAACATTGTTTTG--TC--TTGGTTGTTTTACTCCGGTTTC--------AACATTTAGCCGACCAAGATTAC----AAATTTAAAA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCT--TGCAA------CC----CAA-----AAATA--TTGATA--A-A-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCT---ATGTCTAGT-----ACTTAATAAAAGTtgatctttggtgccatttca
gi|8 : tctttttaatagctttTTTATTTTTCTCTTTGAAGACTGT----------CCC-GAATAGCTTGATA--AGA-GACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACT---GTGTATGCT-----ATT--ATAGAAGTGTGTATTGGAAACTAAAATAAAa
gi|9 : caTTGTTTTC-GTTCCTTTACTTTTTCT-----------GTTC----CAGTCCC-GAATGGCTTGATAG-A-A-GAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTT---ATATCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT
Alignments
lowQualScore : 11 11111 555555555555 222 11 11 11 11111 2222 222 444444444 99999999999999999999 3333333 11 22222 11 11
lowQualScore : 5 44 1 7777 1 3 88 3 55 0 4 1 1 1 888 44444 0 99 0 44 444444444444 55 1 111 1 8 1 1 11 11 11 66666 77 1 99 1 1 1 0 1 8 6666 333 555555555 1 22 22 333 1 1 4444 333 77777777777777777777 2222222 4 1 1 1 1 66 77777 88 1 1 1 88
lowQualScore : . .. . .... . . .. . .. . . . . . ... ..... . .. . .. ............ .. . ... . . . . .. .. .. ..... .. . .. . . . . . . .... ... ......... . .. .. ... . . .... ... .................... ....... . . . . . .. ..... .. . . . ..
lowQualScore : 7 66 8 1111 4 3 66 6 22 7 4 4 4 4 888 33333 1 22 3 00 555555555555 00 0 222 0 0 0 4 00 00 00 77777 33 0 22 0 7 0 8 4 0 7777 333 777777777 0 00 00 000 0 0 0000 000 00000000000000000000 5555555 0 0 0 0 0 55 00000 55 0 0 0 00
consensus : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATA-CTATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNNNTNNNGNTGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
Reference ( family-4205 ) : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CACACCTATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNNNTNNNGNCGNTGTTCGAATTATTTAACACTTTTTCAGGTTCATATTTATACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
gi|1 : TTCTTTT---TTTCTTTTATATGTCT--TGGAAGACTGTTCTGGACAGTCCC-GAAAAGCTTGATA--A-ACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACT---ATGTCGAAC-----ATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC-------------------GACACGTATTATTACAAAAAAA-TATGAACATGGTTTAT--TC--TCAGTTCTTTTACTCCTTTCCTTTACTCTGACA-TTAGTCAACAGATATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAAC-CACAA--ATGAA---TCTAACAA-C-----TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTTTTTGATGC-------------------CACT-------GTTCATATTTAAACAATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|10 : TTTTATTTTTCG--CAGAAGACTATTC----CAGACCT-GAATTGCTTGATA--A-A-GAAGACATTTGAAATA
gi|11 : tTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTTATC----TAGTCTG-GAACAGCCTTATACTA-------GTATTTTAC-CAAAACTA-Ttagataaaataaaattagcatgtatgtaatgcaaaaac
gi|12 : TCATTTATTTTTCT--TGGAAGATATTTC----CATTTTC-GAACAGCTTGATA--A-A-AAA
gi|12 : AAAACTACCAAAATT---ATGCCTACT-----ATactaccaaaattatgcctactat
gi|13 : tcatttatttttcttggaagatatttccattttcgaacagcttgataaaA-----ACAT--AGCCAACCAAGATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGC-C
gi|15 : tTTC-ACTTCTAATATGTGTCT--TGAAA--CTGTTC----CAGACCC-GAATAGCTTG
gi|16 : TGAGACTTTTAAAGAAGTTCTACAACCATAAC-Cca
gi|2 : cTTTTC-ATTTCTTATATTTTTCT--TGGAAGACTGTTC----CAGTCCC-AAATAGCTTGCTG--A-ACGAAGGTATTTAGCATGGAACTATTCTA
gi|2 : t-TATGAACTTGCTTTAG--TC--TCAGTTGTTTTACACTTTT--TTCA-----ATATCTAGTCAGCCATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAAC-CTT--CTATGAA---TCTGA-----TA--AGTTGTTTTGAGATGCCACTGTGCCAGGATATGAATGCAGAATCCAGATGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|3 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTCTTTTATATGTCT--TGGAAGACTGTTT----CCATCTC-GAATAGCT-GACA--A-A-----GTA--------------A-T---------GTACATGAAAACTTCCAAAACT---ATGTCGACT-----ATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATATC--G---GTAAGATGGACATTTGTTAT--CAAAAAAA-TATGAACATGGTTTAGACTCTGTCAGTTGGTTTACTCTGTT--TTCA-----ACATTTATCCAGCAAAAATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAGCACATACTTATGAAACCTCTAACGACCTAGGATTTGTTT
gi|4 : TTCTTTT-TTTTGC----GGAGGACTATTC----CAGTCCCAGAGT-GCTTGATA--A-A--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACT---ATGTCTGCT-----A-A--ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATCAT--TTAG---GTAAGGCGGGCATGTATTATTA-AAATTAT-TATGAACCTTGTTATG--TC--TCATTTGTTTTACTCTGCT--ATCA---------CTAGCCAACTAAGAATACTCAGATATCTGAAACTTTTAA
gi|5 : a-ACTTTTTTTATGTGTCT--TGGAAAACTGTTC----CAGTCCC-GAATAGCTTGGTA--A-AAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGATGTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACTttataacaacataattatg
gi|6 : tCTAAAATAAAATTACCAT-----GTACATAAGATGAATATTTATTATT---AAACAATTATGAACATTGTTTTG--TC--TTGGTTGTTTTACTCCGGT--TTCA-----ACATTTAGCCGACCAAGATTAC----AAATTTAAAA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCT--TGCAA------CC----CAA-----AAATA--TTGATA--A-A-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCT---ATGTCTAGT-----ACTTAATAAAAGTtgatctttggtgccatttca
gi|8 : tctttttaatagctttTTTATTTTTCTCTTTGAAGACTGT----------CCC-GAATAGCTTGATA--AGA-GACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACT---GTGTATGCT-----ATT--ATAGAAGTGTGTATTGGAAACTAAAATAAAa
gi|9 : caTTGTTTTC-GTTCCTTTACTTTTTCT-----------GTTC----CAGTCCC-GAATGGCTTGATAG-A-A-GAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTT---ATATCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT
Alignments
lowQualScore : 11 11111 555555555555 222 11 11 11 11111 2222 222 444444444 888888888888888 333333 3333333 11 22222 11 11
lowQualScore : 5 44 1 7777 1 3 88 3 55 0 4 1 1 1 888 44444 0 99 0 44 444444444444 55 1 111 1 8 1 1 11 11 11 66666 77 1 99 1 1 1 0 1 8 6666 333 555555555 1 22 22 333 1 1 222222222222222 000000 3 2222222 1 1 1 1 1 66 77777 88 1 1 1 88
lowQualScore : . .. . .... . . .. . .. . . . . . ... ..... . .. . .. ............ .. . ... . . . . .. .. .. ..... .. . .. . . . . . . .... ... ......... . .. .. ... . . ............... ...... . ....... . . . . . .. ..... .. . . . ..
lowQualScore : 7 66 8 1111 4 3 66 6 22 7 4 4 4 4 888 33333 1 22 3 00 555555555555 00 0 222 0 0 0 4 00 00 00 77777 33 0 22 0 7 0 8 4 0 3333 333 777777777 0 00 00 000 0 0 555555555555555 555555 0 5555555 0 0 0 0 0 55 00000 55 0 0 0 00
consensus : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
Reference ( family-4205 ) : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNNNTNNNGNTGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
gi|1 : TTCTTTT---TTTCTTTTATATGTCT--TGGAAGACTGTTCTGGACAGTCCC-GAAAAGCTTGATA--A-ACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACT---ATGTCGAAC-----ATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC-------------------GACACGTATTATTACAAAAAAA-TATGAACATGGTTTAT--TC--TCAGTTCTTTTACTCCTTTCCTTTACTCTGACA-TTAGTCAACAGATATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAAC-CACAA--ATGAA---TCTAACAA-C-----TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTT-------------TTTGA------TGCCACT-------GTTCATATTTAAACAATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|10 : TTTTATTTTTCG--CAGAAGACTATTC----CAGACCT-GAATTGCTTGATA--A-A-GAAGACATTTGAAATA
gi|11 : tTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTTATC----TAGTCTG-GAACAGCCTTATACTA-------GTATTTTAC-CAAAACTA-Ttagataaaataaaattagcatgtatgtaatgcaaaaac
gi|12 : TCATTTATTTTTCT--TGGAAGATATTTC----CATTTTC-GAACAGCTTGATA--A-A-AAA
gi|12 : AAAACTACCAAAATT---ATGCCTACT-----ATactaccaaaattatgcctactat
gi|13 : tcatttatttttcttggaagatatttccattttcgaacagcttgataaaA-----ACAT--AGCCAACCAAGATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGC-C
gi|15 : tTTC-ACTTCTAATATGTGTCT--TGAAA--CTGTTC----CAGACCC-GAATAGCTTG
gi|16 : TGAGACTTTTAAAGAAGTTCTACAACCATAAC-Cca
gi|2 : cTTTTC-ATTTCTTATATTTTTCT--TGGAAGACTGTTC----CAGTCCC-AAATAGCTTGCTG--A-ACGAAGGTATTTAGCATGGAACTATTCTA
gi|2 : t-TATGAACTTGCTTTAG--TC--TCAGTTGTTTTACACTTTT--TTCA-----ATATCTAGTCAGCCATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAAC-CTT-C-TATGAA---TCTGA-----TA--AGTTGTTTTGAGATGCCACTGTGCCAGGATATGAATGCAGAATCCAGATGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|3 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTCTTTTATATGTCT--TGGAAGACTGTTT----CCATCTC-GAATAGCT-GACA--A-A-----GTA--------------A-T---------GTACATGAAAACTTCCAAAACT---ATGTCGACT-----ATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATATC--G---GTAAGATGGACATTTGTTAT--CAAAAAAA-TATGAACATGGTTTAGACTCTGTCAGTTGGTTTACTCTGTT--TTCA-----ACATTTATCCAGCAAAAATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAGCACATACTTATGAAACCTCTAACGACCTAGGATTTGTTT
gi|4 : TTCTTTT-TTTTGC----GGAGGACTATTC----CAGTCCCAGAGT-GCTTGATA--A-A--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACT---ATGTCTGCT-----A-A--ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATCAT--TTAG---GTAAGGCGGGCATGTATTATTA-AAATTAT-TATGAACCTTGTTATG--TC--TCATTTGTTTTACTCTGCT--ATCA---------CTAGCCAACTAAGAATACTCAGATATCTGAAACTTTTAA
gi|5 : a-ACTTTTTTTATGTGTCT--TGGAAAACTGTTC----CAGTCCC-GAATAGCTTGGTA--A-AAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGATGTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACTttataacaacataattatg
gi|6 : tCTAAAATAAAATTACCAT-----GTACATAAGATGAATATTTATTATT---AAACAATTATGAACATTGTTTTG--TC--TTGGTTGTTTTACTCCGGT--TTCA-----ACATTTAGCCGACCAAGATTAC----AAATTTAAAA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCT--TGCAA------CC----CAA-----AAATA--TTGATA--A-A-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCT---ATGTCTAGT-----ACTTAATAAAAGTtgatctttggtgccatttca
gi|8 : tctttttaatagctttTTTATTTTTCTCTTTGAAGACTGT----------CCC-GAATAGCTTGATA--AGA-GACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACT---GTGTATGCT-----ATT--ATAGAAGTGTGTATTGGAAACTAAAATAAAa
gi|9 : caTTGTTTTC-GTTCCTTTACTTTTTCT-----------GTTC----CAGTCCC-GAATGGCTTGATAG-A-A-GAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTT---ATATCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT
Alignments
lowQualScore : 11 11111 555555555555 222 11 11 11 11111 2222 222 444444444 555555555555555 333333 3333333 11 22222 11 11
lowQualScore : 5 44 1 7777 1 3 88 3 55 0 4 1 1 1 888 44444 0 99 0 44 444444444444 55 1 111 1 8 1 1 11 11 11 66666 77 1 99 1 1 1 0 1 8 6666 333 555555555 1 22 22 333 1 1 111111111111111 000000 1 2222222 1 1 1 1 1 66 77777 88 1 1 1 88
lowQualScore : . .. . .... . . .. . .. . . . . . ... ..... . .. . .. ............ .. . ... . . . . .. .. .. ..... .. . .. . . . . . . .... ... ......... . .. .. ... . . ............... ...... . ....... . . . . . .. ..... .. . . . ..
lowQualScore : 7 66 8 1111 4 3 66 6 22 7 4 4 4 4 888 33333 1 22 3 00 555555555555 00 0 222 0 0 0 4 00 00 00 77777 33 0 22 0 7 0 8 4 0 3333 333 777777777 0 00 00 000 0 0 555555555555555 555555 0 5555555 0 0 0 0 0 55 00000 55 0 0 0 00
consensus : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
Reference ( family-4205 ) : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
gi|1 : TTCTTTT---TTTCTTTTATATGTCT--TGGAAGACTGTTCTGGACAGTCCC-GAAAAGCTTGATA--A-ACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACT---ATGTCGAAC-----ATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC-------------------GACACGTATTATTACAAAAAAA-TATGAACATGGTTTAT--TC--TCAGTTCTTTTACTCCTTTCCTTTACTCTGACA-TTAGTCAACAGATATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAAC-CACAA--ATGAA---TCTAACAA-C-----TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTT-------------TTTGA------TGCCACT-------GTTCATATTTAAACAATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|10 : TTTTATTTTTCG--CAGAAGACTATTC----CAGACCT-GAATTGCTTGATA--A-A-GAAGACATTTGAAATA
gi|11 : tTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTTATC----TAGTCTG-GAACAGCCTTATACTA-------GTATTTTAC-CAAAACTA-Ttagataaaataaaattagcatgtatgtaatgcaaaaac
gi|12 : TCATTTATTTTTCT--TGGAAGATATTTC----CATTTTC-GAACAGCTTGATA--A-A-AAA
gi|12 : AAAACTACCAAAATT---ATGCCTACT-----ATactaccaaaattatgcctactat
gi|13 : tcatttatttttcttggaagatatttccattttcgaacagcttgataaaA-----ACAT--AGCCAACCAAGATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGC-C
gi|15 : tTTC-ACTTCTAATATGTGTCT--TGAAA--CTGTTC----CAGACCC-GAATAGCTTG
gi|16 : TGAGACTTTTAAAGAAGTTCTACAACCATAAC-Cca
gi|2 : cTTTTC-ATTTCTTATATTTTTCT--TGGAAGACTGTTC----CAGTCCC-AAATAGCTTGCTG--A-ACGAAGGTATTTAGCATGGAACTATTCTA
gi|2 : t-TATGAACTTGCTTTAG--TC--TCAGTTGTTTTACACTTTT--TTCA-----ATATCTAGTCAGCCATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAAC-CTT-C-TATGAA---TCTGA-----TA--AGTTGTTTTGAGATGCCACTGTGCCAGGATATGAATGCAGAATCCAGATGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|3 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTCTTTTATATGTCT--TGGAAGACTGTTT----CCATCTC-GAATAGCT-GACA--A-A-----GTA--------------A-T---------GTACATGAAAACTTCCAAAACT---ATGTCGACT-----ATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATATC--G---GTAAGATGGACATTTGTTAT--CAAAAAAA-TATGAACATGGTTTAGACTCTGTCAGTTGGTTTACTCTGTT--TTCA-----ACATTTATCCAGCAAAAATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAGCACATACTTATGAAACCTCTAACGACCTAGGATTTGTTT
gi|4 : TTCTTTT-TTTTGC----GGAGGACTATTC----CAGTCCCAGAGT-GCTTGATA--A-A--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACT---ATGTCTGCT-----A-A--ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATCAT--TTAG---GTAAGGCGGGCATGTATTATTA-AAATTAT-TATGAACCTTGTTATG--TC--TCATTTGTTTTACTCTGCT--ATCA---------CTAGCCAACTAAGAATACTCAGATATCTGAAACTTTTAA
gi|5 : a-ACTTTTTTTATGTGTCT--TGGAAAACTGTTC----CAGTCCC-GAATAGCTTGGTA--A-AAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGATGTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACTttataacaacataattatg
gi|6 : tCTAAAATAAAATTACCAT-----GTACATAAGATGAATATTTATTATT---AAACAATTATGAACATTGTTTTG--TC--TTGGTTGTTTTACTCCGGT--TTCA-----ACATTTAGCCGACCAAGATTAC----AAATTTAAAA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCT--TGCAA------CC----CAA-----AAATA--TTGATA--A-A-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCT---ATGTCTAGT-----ACTTAATAAAAGTtgatctttggtgccatttca
gi|8 : tctttttaatagctttTTTATTTTTCTCTTTGAAGACTGT----------CCC-GAATAGCTTGATA--AGA-GACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACT---GTGTATGCT-----ATT--ATAGAAGTGTGTATTGGAAACTAAAATAAAa
gi|9 : caTTGTTTTC-GTTCCTTTACTTTTTCT-----------GTTC----CAGTCCC-GAATGGCTTGATAG-A-A-GAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTT---ATATCTA
blockSeqs : C CT G . A A CT G CG T C T A ATG ATAAG TA TT ATATCGG AT T TA A T T A AC TG . . TC C CA A A C C A ACTT ACC CGACCTAGG A AC TG GGA A A AGAATCCAGATGATA ATTATT A TTTTCAG T G T A T A AACAA AT T T G TG
blockSeqs : . . G . T . G . AG . A T T . . . TA ATTTAGG GC G C T . A A . . . . TT C . G A A T . CT . TA
blockSeqs : . . G . T . . . G . T T G . . . TG ATGTACA AT T T C . C T . . . . TT A . G G A G .
blockSeqs : . . G . A . . . A . C T T . . . . . A T . . . . T T . C A T C .
blockSeqs : . . G . T . . . A . C T G . . . . C C . T .
blockSeqs : . . G . T . . . G . C C G . .
blockSeqs : . A . T . . . G . . G .
blockSeqs : . G . T . . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : **** G* ** ***** TT
originalCons : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
finalCons : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-AG-AAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT
Alignments
lowQualScore : 11 11111 555555555555 222 11 11 11 11111 2222 222 444444444 555555555555555 333333 3333333 11 22222 11 11
lowQualScore : 5 44 1 7777 1 3 88 3 55 0 4 1 1 1 888 44444 0 99 0 44 444444444444 55 1 111 1 8 1 1 11 11 11 66666 77 1 99 1 1 1 0 1 8 6666 333 555555555 1 22 22 333 1 1 111111111111111 000000 1 2222222 1 1 1 1 1 66 77777 88 1 1 1 88
lowQualScore : . .. . .... . . .. . .. . . . . . ... ..... . .. . .. ............ .. . ... . . . . .. .. .. ..... .. . .. . . . . . . .... ... ......... . .. .. ... . . ............... ...... . ....... . . . . . .. ..... .. . . . ..
lowQualScore : 7 66 8 1111 4 3 66 6 22 7 4 4 4 4 888 33333 1 22 3 00 555555555555 00 0 222 0 0 0 4 00 00 00 77777 33 0 22 0 7 0 8 4 0 3333 333 777777777 0 00 00 000 0 0 555555555555555 555555 0 5555555 0 0 0 0 0 55 00000 55 0 0 0 00
consensus : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
Reference ( family-4205 ) : TTGTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTGTTC----CAGTCCC-GAATAGCTTGATA--A-A-GAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTGCCAAAACT---ATGTCTACT-----ATT--ATAAGAATGTGTCTTGGAGACTAAAATAAAATTATCAT--C--G---GTAAGACGGACATNTATTATTACAAAANAA-TATGAACATGGTTTAG--TC--TCAGTTGTTTTACTCCGTT--TTCA-----ACATTTAGCCAACCAAGATTACT--GAAATNTGAGACTTTTAAAGAAGTTCTACAACCACAAC-CATAC-TATGAA---TCTAACGA-CTA--ATTTGTTTCGAGNTGCCNNTGNNCCGNNNCNCGANTGCNNAATCCAGATGATATTTGAATTATTTGNCACTTTTTCAGGTTCATATTTANACAATGGTTTCGNCNATACAGAAACTTCAACNTANANTTTATTTTTAACAATACAATGTATTATNAACAACAGATGTGGCNGAGANATCACTATTGCCAAAACACTTCCAAGATACT
gi|1 : TTCTTTT---TTTCTTTTATATGTCT--TGGAAGACTGTTCTGGACAGTCCC-GAAAAGCTTGATA--A-ACGAAGGTATTTGACATAAAACTA-TCTACCTGAGGTACACGAAAACTTCCAAAACT---ATGTCGAAC-----ATT--ATAAGAATGTGTCTTGGCGACTAAAATAAAATTATC-------------------GACACGTATTATTACAAAAAAA-TATGAACATGGTTTAT--TC--TCAGTTCTTTTACTCCTTTCCTTTACTCTGACA-TTAGTCAACAGATATTACT--GAAATCTGAGACTTTTAAAGAAGTTCTACAACCATAAC-CACAA--ATGAA---TCTAACAA-C-----TTTGTTTCGAGTTATTTATAATCTGTTTCTCAATTGTTT-------------TTTGA------TGCCACT-------GTTCATATTTAAACAATGGTTTTATCAATACAGAAACTTCAACCTAGACTTTATTTTT-----TACA--GTATTATAAACAACAGATGTGACAGAAATATCATTAT--CCAAAACACTTCCAAGATACT
gi|10 : TTTTATTTTTCG--CAGAAGACTATTC----CAGACCT-GAATTGCTTGATA--A-A-GAAGACATTTGAAATA
gi|11 : tTTTTC-ATTTCTTTTATTTTTCT--TGGAAGACTTATC----TAGTCTG-GAACAGCCTTATACTA-------GTATTTTAC-CAAAACTA-Ttagataaaataaaattagcatgtatgtaatgcaaaaac
gi|12 : TCATTTATTTTTCT--TGGAAGATATTTC----CATTTTC-GAACAGCTTGATA--A-A-AAA
gi|12 : AAAACTACCAAAATT---ATGCCTACT-----ATactaccaaaattatgcctactat
gi|13 : tcatttatttttcttggaagatatttccattttcgaacagcttgataaaA-----ACAT--AGCCAACCAAGATTATT--GACATATGAGATTTTTAAAGCAGATCTACAATCACAGC-C
gi|15 : tTTC-ACTTCTAATATGTGTCT--TGAAA--CTGTTC----CAGACCC-GAATAGCTTG
gi|16 : TGAGACTTTTAAAGAAGTTCTACAACCATAAC-Cca
gi|2 : cTTTTC-ATTTCTTATATTTTTCT--TGGAAGACTGTTC----CAGTCCC-AAATAGCTTGCTG--A-ACGAAGGTATTTAGCATGGAACTATTCTA
gi|2 : t-TATGAACTTGCTTTAG--TC--TCAGTTGTTTTACACTTTT--TTCA-----ATATCTAGTCAGCCATGATTACT--GAAATGTGAGGTTTATAGATAATTTCTACAACAAGAAC-CTT-C-TATGAA---TCTGA-----TA--AGTTGTTTTGAGATGCCACTGTGCCAGGATATGAATGCAGAATCCAGATGATATTTGAATTATTTAACACTTTTTCAGGTTCATATTTATATAATGGTTTCGGCTATACAGAAACTTCAACATATAA-TTATTTTTAACAATACAATGTATTATTAACAATAGATGTGGCTGAGAGATCACTATTGCTAAAACACTTCCAAGATATTagaatttgaatgtgttttgaagatacgacggactttttgttatgaacttgctttagtctcagttgttttacacttttttcaatatctagtcagccatgattactgaaatgtgaggtttatagataatttctacaacaagaaccttctatgaatctgataagttgttttgagatgccactgtgccaggatatgaatgcagaatccagatgatatttgaattatttaacactttttcaggttcatatttatataatggtttcggctatacagaaacttcaacatataattatttttaacaatacaatgtattattaacaatagatgtggctgagagatcactattgctaaaacacttccaagatatt
gi|3 : tttttcatttcttatatttttcttggaagactgttccagtcccaaatagcttgctgaacgaaggtatttagcatggaactattctaagaatttgaatgtgttttgaagatacgacggactttttgtTCTTTTATATGTCT--TGGAAGACTGTTT----CCATCTC-GAATAGCT-GACA--A-A-----GTA--------------A-T---------GTACATGAAAACTTCCAAAACT---ATGTCGACT-----ATT--ATAAGAATGAGTCTTTGATACTAAATTAAAATTATCATATC--G---GTAAGATGGACATTTGTTAT--CAAAAAAA-TATGAACATGGTTTAGACTCTGTCAGTTGGTTTACTCTGTT--TTCA-----ACATTTATCCAGCAAAAATTGCT--GAAATGTGAGACTTTTA---TAGTGTCAC-ATCACAGCACATACTTATGAAACCTCTAACGACCTAGGATTTGTTT
gi|4 : TTCTTTT-TTTTGC----GGAGGACTATTC----CAGTCCCAGAGT-GCTTGATA--A-A--AAGATATTTTACATAATACTA-TATAACTGGGGTACATGAAAACTGCCAAAACT---ATGTCTGCT-----A-A--ATAAGAATGTGTTTTATAGACTAGAATAAAGTTATCAT--TTAG---GTAAGGCGGGCATGTATTATTA-AAATTAT-TATGAACCTTGTTATG--TC--TCATTTGTTTTACTCTGCT--ATCA---------CTAGCCAACTAAGAATACTCAGATATCTGAAACTTTTAA
gi|5 : a-ACTTTTTTTATGTGTCT--TGGAAAACTGTTC----CAGTCCC-GAATAGCTTGGTA--A-AAGAAGGTATTTGACA--AAACTA-TTTACCTGAGGTACATGAAAACTTCCAAAACTATGATGTCTATTATAAGATT--ATAAGATTGCGTCT--GAGACTttataacaacataattatg
gi|6 : tCTAAAATAAAATTACCAT-----GTACATAAGATGAATATTTATTATT---AAACAATTATGAACATTGTTTTG--TC--TTGGTTGTTTTACTCCGGT--TTCA-----ACATTTAGCCGACCAAGATTAC----AAATTTAAAA
gi|7 : TTGTTTTCCATTTCTTTTATTTTTCT--TGCAA------CC----CAA-----AAATA--TTGATA--A-A-AAAGGTATTTGACATGAAATTA-TCTACCTTGGGTACATGAAAACTGTCGAATCT---ATGTCTAGT-----ACTTAATAAAAGTtgatctttggtgccatttca
gi|8 : tctttttaatagctttTTTATTTTTCTCTTTGAAGACTGT----------CCC-GAATAGCTTGATA--AGA-GACTGTATTTGGCATAAAACTA-TCTACCTGAGGTACATGCACACAGACAATACT---GTGTATGCT-----ATT--ATAGAAGTGTGTATTGGAAACTAAAATAAAa
gi|9 : caTTGTTTTC-GTTCCTTTACTTTTTCT-----------GTTC----CAGTCCC-GAATGGCTTGATAG-A-A-GAAAGTATTTAACATAAAACGA-TCTACCGGAGTTAAACGAAGAGTGTCAAACTT---ATATCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTGCTTTGAAATGTCACTGTACCAGGATGAGGATGCATAATCCAAATGAAGTTGTATT