lowQualScore : 111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 666666666666666666666666666666666666666666 1111 8888888 111111 111111 444444444444444444444444 111111111 1111111111111 1111 33333333333333333 111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222 111 11111111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000000000000 1111 2222 1
lowQualScore : 5 5 6 888888888888888888888888888888888888888888 2222 1 1111111 888888 44 444444 999999 888888888888888888888888 4 44 333333333 2222222222222 0 1111 44444444444444444 44 3 000000 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 4 99999 3 3 555 888 333 4 66 55 2 888 2 2 66666666666 88888888 2 8888888888888888888888888888888888888888888888888888888888888888888888888888 3333 8 2 0000 4 6 11 6 666 0 6 5
lowQualScore : . . . .......................................... .... . ....... ...... .. ...... ...... ........................ . .. ......... ............. . .... ................. .. . ...... ............................................................................................................................................................................................................................... . . ..... . . ... ... ... . .. .. . ... . . ........... ........ . ............................................................................ .... . . .... . . .. . ... . . .
lowQualScore : 0 0 0 000000000000000000000000000000000000000000 5555 6 3333333 888888 22 222222 111111 555555555555555555555555 5 55 888888888 6666666666666 2 7777 33333333333333333 66 3 222222 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 3 88888 5 1 444 333 777 8 55 88 1 777 1 1 99999999999 77777777 2 8888888888888888888888888888888888888888888888888888888888888888888888888888 6666 4 7 5555 7 0 88 0 222 1 0 0
consensus : NNNNNNNNNNNNNTAATGATGGTTTAACAAGTACCTTAT---TTATNAATATAGAT------T-TATN---ATCACATAATTTAC----GGTGCAGGAGTGTAATAAACC---CT-ATGAC------ATATT--TT--TTA-TATTAA--CCTAGTGTAATA----------T-C-CTN-CCGA-TTCATCGCTCGG-CG---TTN---TCCGTATAACT----CGGC-----TCTCGTACGT----AAAA--TGCCGAACT----ACTTT--CC-GA-----CTTG---C-----C--CG--A-ACA--TAT----A-----AATGA---------C---G-----TC-G-A----TT-----A--C----GT-----C-----ANACG--ATG--ACT-ANCGGA---AACNAATATGC-CNNATTTTTTCTCGT---TCTTTAT--AGAGGT----GATNT---GTNAA---ATAAATNGTAAA--TGNACC---ANTAT-------CCTGAGTTATGTGATAAA-A-GAATCTTA-C---ATTCGTGCTCATTT---ATTATTN-A--A-T---TT-A-T-T---AAACTCGTTGG-CA-----A-AA-T-GA-TAT-----AATGC---TCGGTA-GA----G---C--GCCTCG-CATAATAT---A--ATT-TTG--C---CAACTCG-TTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCTAGAG
Reference ( gi|2 ) : ACTAAGTTAAAGATAATTATGCTTTAATATTT-CCTTATTGCTTATGAATGTAGATCCAGTATATATA---ATCACATAATTTAC----GGTGCAGGAGTGTAATAAACCGAACTAATGAC------ATATT--TT--TTG-TATTAA--CATAGTGTAATA----------T-CTCTT-TCGA-TTCATCGCTCGG-TG---TTG---TCCGTATAACT----CGGC-----TCTCGTACGT----AATT--TGTCGAGGT----ACTTT--CC-GA-----CTTG---C-----T--TG--G-ATA--TAT----A-----AATGA---------C---G-----TC-G-A----TT-----A--C----GT-----C-----ACATG--ATG--ATT-ACCGGA---AACAAATATGC-CAGATTTGTTCTCGT---TCTTTAA--AGAGGT----TATCT---GTTTA---ATATATGGTAAAAATGAAAA---AAAAT-------CCTGAATTATGTGATAAA-ACGAATTTTA-C---AGTCGTGCTCATTT---ATTGTTG-A--A-T---TT-A-T-C---AAATTCGTTGG-GA-----A-AA-T-GA-TAT-----AATAC---TCGGTA-GA----G---C-CGCCTCG-CATAACAT---A-GATT-TT---C---CAACTTG-TTCAAT-AA---CTTCAATAATAAATAAACACTCATGTAAAATCCTC--TATATATCTGACGAGAGAACGCGAGTATCTAGTCTAACGTTG
gi|7 : TAATGATGGTTTAACAAGTACCTTAT-----ATAA---TAAAT------TATAGG---ATT-TATAACTTCC----TATGGAAGAGTGTAATAAACGCAA-----GAC------GT-TT--TC--TTA-TATTAA--CTCAGTGTAATA----------T-CACTA-CCGA-TTCATCGTTCGG-AG---TTT---TCCGTATAACT----CGTC-----TTTCGTACGT----AAAT--TACCGAACT----ATTTT--AC-GA-----TTTATGAC-----TAATGTCG-ATT--CGTCA--A-----AGTTA---------T---T-----TT-G-AGACATT-----A--CAC--GT-----C-----ATACG--ATG--ACTGACCGAA---ATTAA---TGA-CAC-----TCCACGT--------AACTAGAGGT----TAT------TTTAGAAATAAATTGTAATTGT-----------ATTTTTTTTCCTGATGTATGTGATAAA-GAAAATCTTA-C---ATCCGTTCTCATTT---ATTATTT-A--A-T---TT-A-T-T----AACTCGTCGG-CA-----A-AACT-GG-TAT-----GATGT---GTGACA-GA-----------GCCTTG-CATAATAT------ATTGTTA--C---CAACTC--TTTGGT-AA---ATTCAATAATAAACGAGCACTCTTGTAAGATCCTCAATATATAGCTAGCTAGAG
gi|3 : TTATTAATATAGAT----------TT---ATCACATAATTTGC----AGTGCAAGAGTGTAATAAACC---C--ATGAC------ATATT--TC--TTA-TATAAA--CAAAGTGTAATA----------T-CACTT-CCAA-TTCATCGCTCAG-CA---ATT---CCCATACAA----------------CTTGCACAT----AAAA--TGCCAAACT----ACTTT--CT-GA-----CTTG---T-----C--CA--A-ACA--TAT----AAAATTAATGC---------A---G-----TT-G-A----TT--------C----GT-----C-----Agcg
gi|8 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggGTATTTGTATTTATCACATAATTTAC----GGTGCATGAGTGTAATAACCC-----AATGAC------ATATT--TT----GATATTAA--CCTAGTGTAATG----------T-CACTT-CCGA-ACCCTCACTCGG-TG---ATT---TCCGTATAACT----CAGC-----TCTCGTACGC----AATA--TGCTGAAGT----GCTTT--CC-AA-----CTTG---C-----C--CG--G-ACT--CAT----G-----AATG--------------G-----TC-G-A----TT--------T----GT------------TATG--ATA--AT------------ACACACAT---TAAATTTGTTTTtggtaaaatgacattatttggagactttgtgtaatgcaatgactggtgaaaacgtatttgcccatttttttctaaatttttatagcggtgatcattctgaaaagaaatagtaaatgttccattttcttgagtacgtgattaaaagtgctcatttataattcagtttactcatcggcaaaaatgatatatttttggacaattcgttaaatatagtcagtaataaatgagcactcacataagattctttatatatcattctgttatgaaattacatg
gi|10 : tgatatcacgtatcgaacgtttataacTATT---ATCACATAACATAC----GGTGCAGGAGTGTA--AAAC---ACTCATGACCATTTTATATT--TA--TT--TATTAA--CCTAGTATAATA--------------ATTACCAA-ATATTCGC-CGG-CG---CT----TCGGTAAAGCC----CGTA-----TATTGTACGTTA--AATTCCTATCAACTTTTCGACTTT--CC-GGAACATCTTA---CTACCAT--CG--A-ATAGTCATTGTAA-----AATAG---------C---GTTATTTT-G-AAACGTT-----A--C----GT-----C-----AAACG--ATG--ACC-ACCGGA---ATCTTATATGC-CTGACCTTTTC---T---TC-TTAT--AGAGGTGAGGTATCCCGAGT-------TATGTGATAAAagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaactcgacagagcatcgcatgatatattttgtcaactcgtttaataaattcaataaaaattagcgctcatgtaagatcccatatatatc
gi|4 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaatctctaaacaaaactA---ATAACATAAGTTATTGTTGGTGCAG-AGTGTAATAAACT----------C------ATAAT--TT--TGA-TATTAA--CCTGGTGTAATACTGTCATGTAT-CTCTA-CCGC-GTCAACGTGCAG-CGGACTTG---TCCG---AACT----TATCAATAACCTCG----------ATT--TGT-GGTGT----TCTTC--CC-G-------------------------------------------------GA---------C---G-----T----------T-----A--C----GT-----C-----ATACT--ATG--ACT-GACGGA---AACTAATACGC-GCG-TTTTTTCTCAT---CCTG-AT--AGAGCT----GATGT---GTAAA---ATAAATAGTAA---TGTAGATCTACCATTTA----CCTGAGATGTGTGATACA-AAGAATCTTG-C---ATTCGTGCCCATTT---ATTTTTTTA--A-TCC-TT-A-------AAACTCGTTGG-CA-----A-AA-TTGA-TAT-----GATGC---TCGGCC-GA----G---C-C---TCG-CATAA--T---A-AATG-TTG--C---CAACTCA-ATTAAT-AA---ATTCAATAATAAATAAGCATTCTTGTAAGATTCTC--CATTTATcttacacgtgctcatttataattgttatattatgccaactcgtttaatagatttaatgag
gi|1 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtactatttaatgtacaaataaaatgTCAAATAATTTAA----GGTGCAG-AGTGTAAAATATCCA--CAAT---------ATATT--TT--TTG-TATTAA--CCTAGTGTAATG----------T-CTCTT-CTGA-TACATTGCTCAG-TG---TTAAATTCTGTATAACT----TGGC-----TCTTGTATGT----AAAA--TGCCAAATT----GCTAT--CT-GA-----TTTG---C-----C--CA--C-ATA--TGT----A-----AATGAGACAATTTTCATGG-----TTAG-A----TTTTGAGA--C----GTTTTGTC-----ATACA--ATG--ATT-CGCAGA---AACTAGTATGC-CCTATTC-TTCT-GTAATTCCTCAT--AGAGGT----GATCT---GATAA---ATTAATGGTAAAATTGGACC---ATTTT-------CCAAAGTTATTTGATAAATAT--ATTGTAAC---ATGGGTGCTCATTT---ATTGTTG-ATGACT---TT-A-T-T---TAACTTGTTGGTAA-----A-AA-T-GA-------------------GGCA-GA-----------GCCTAA-CATAATGT---A-TTTT-TG---C---CAACTCG-TTTAAT-AAAT-ATTTAATAATAAATGAGAACTCAAGTAAGATCCTC--TAAATCTCtattatcaaaccagtcatgtt
gi|6 : aaacaactcatattttttaaaccagtatgacaccattagttttataaatatcttctACGTAATTTAT----TGTGCAGGAATGTAATAAAC----CT-ATGAC------ATGTC--TT--TGT-TATTAAATTATAGTGTAATA----------T-C-----ACGATTTCTTCCCTC-G-TG---TAA---ACCGTATAACT----TGAC-----TCTTGTACAT----ACAA--TGCAAAACG----ACTTT--CT-GT-----CTTA---C-----C--CG--A-AAA--TAT----A-----TAAGA---------C---A-----TA-A-A----TT-----A-------AT-----C-----AC-TG--Aattacacttgtatataaatttctccatatggattatgc
gi|11 : attaattttactACATAATT-AT----GGCGCAGGAGTGTAATATACTG--CT-GTGAC------AGGTT--TT------TATTAA--CCAAATGTAACA----------A-ACCTG-CTGA-TTCATTGCTT-G-TG---CTG---TCCATATAACT----CTCT-----TCTC--ACTT----AAAT--T-CCATGTT----ATTTT--AC-AT-----CTTG---A-----T--GG--A-ACA--TAA----G-----AATGT---------T---G-----TC-A-A----TT-----AATC----GT-----CTTTGTAAATG--ATG--ATT-ATTTGA---Aaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagcaaatattatgtcatttaattttgctatctcatttaataatcaattcaataataaacgagaactcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|5 : gtatcgaacatcatcacatgtgttgtacttacgCATGAGTGACT---GGTACATGAGTGTAATAAAC-----TCATGCC------ATATTATTT--TTA-TATTA-------GAGTTATA----------T-C--------A-TT-ACCGATCAA-------------CCGTACAACTGACTCTGC-----TTTCGTAGGT----AAAA--TG---AGGA----ACTTTTTCC-GG-----CTTG---------T--CG--GCGCA--TCT----A-----AATGA---------C---G-----TC-GCA----TT-----ttggtgttgagcaatgactgatggaaacaaatgtatactagttcatactgttgtttgttaaagcatattggaagaccaatttttttcttgcgtttcaaacagatacaa
gi|9 : gataatcacataatttggcaactatattatgtcaatttatATAGTTTAC----AGTGCAAAAGT--AATAAACC------ATGAC------ATATT--TT--TGA-TATTAA--C---------TA----------C-C-------GA-TTCATTACTCCG-TG---TTG---TCTGTATAACT----TGGC-----ACTTATATATGTTAAATA--TG--GAGCT----TTTTT--TCGGA-----CTTG---C-----T--CG--A-ATA--TCT----T-----AATCA---------T---G-----TT-A-A----TT--------T----AT-----T-----AAATGCAATG--ACT-GATAGA---AACCAATgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcttagttataaaatgaaccatacaatcgtgctattttattatatatttttttttaaaacttgtttgcacaaaagagtattatgcacaacgataattttgcaaccccgccatcatacgattttgtcaattcatttaataattttaaacataaatgagcctc
gi|12 : tAACTCATGGC------CTATT--ATACTTG-T-TTAA--TA------AATA----------TACTATT-TAG---TCATTGCTTGGCTT---TTA---TC-GTATAACT----CTGC-----ACTCGTACCT----AA-A--TACTGAGCA----ACTTT--CC-AA-----CCTA---C-----C--AA--A-ACA--TAT----A-----AATGA---------C---A-----TT-G-A----TT--------T----GT-----C-----Actattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattcatgctcatttagcaataaatttattaaacttagcaaaaattatataatgcatctaagaatgtattctttgccaaatgatttaataaattcaataacaaacaaggacaaatgtaagattctccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
gi|17 : atatactgatgacatatggcatagtcctgagagcaagaATGAC------ATATT--CT--TGA-TATT----------GTA----------------CCTA-TGGA-ATCATCACTTGT-TG---TGG---TCCATATAACT----tggtaaaatggcgttatttggtggaattacataaaacaatgactggtga
gi|15 : taaaacC------ATATT--AT--TTA-TATGAA--CCTTGTGTAATA----------T---------G-----ATCGCTCGG-CG---TTT---TCCGTCTAACT----CTGC-----TCTCGTTCGT----TAAG--TGTTAAACT----TCTTT--CC-GA-----CTTG---C-----C--TT--A-GTA--CAA----A-----AATGA---------C---G-----TC-G-A----TT-----G--CCAGGGT-----A-----AAATG--ACGCTATT-TCCTGACGTAACAttctaacttgtgatgtcaaata
gi|8 : ct-A----TT-----A--C----AT-----C-----ATACG--ATG--ACT-AACGGA---TACTAAAATGAACA-ATTCTTCCTCAT---TCTTTAT--AGAGGT----GACAT---GAAAA---ATAAATTGTAAA--TGCACC---AATTT-------CCTGAGTCATCTGACAAC-A-----TTTG-C---ATTA-----CATTT---ATTATTT-A--A-T---T----------------------------------------AT-----AAAAC---TCGACA-GA----G---C-A---TCG-CATGATAT---A---TT-TTG--T---CAACTCG-TTTAAT-AA---ATTCAATAA-AAATTAGCGCTCATGTAAGATCCCA--TATATATCtc
gi|10 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacAT-------CCCGAGTTATGTGATAAA-------CTTA-C---A--CGTGCTCATTTATAATTGTT-----A-TA--TT-A-TGC---CAACTCGTT
gi|13 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaatctctaaacaaaacttattatcacataacatacggtgcaggagtgtaaaacactcatgaccattttatatttatttattaacctagtataataattaccaaatattcgccggcgcttcggtaaagcccgtatattgtacgttaaattcctatcaacttttcgactttccggaacatcttactaccatcgaatagtcattgtaaaatagcgttattttgaaacgttacgtcaaacgatgaccaccggaatcttatatgcctgaccttttcttcttatagaggtgaggtT-------CCTGAGTTAT-------------ATCTTA-T---A-TCGTGCTCATTT---ATTATTG-A--A-T---TT-A-T-T---AAATTCGTTGGCAA-----A-AA-T-GA-----------------TCGGAA-GA----G-----CGTCCCA-CA----AT---A--ATT-TTTA-T---GAACTCG-TTTAATAAA---ATTCAGTGCTAAATGAGCACTTATATAAGATCCTG--TATATATTTtaatagatttaatgag
gi|5 : agctgaaaaattgtatgttcgtcattTTA-GTTATAAA-ATGAACCATA-C---AATCGTGCTATTTT---ATTATAT-A--T-T---TT-T-T-TTTAAAACTTGTTTG-CAC----A-AA-A-GAGTAT-----TATGCACAACGATA--ATTTTG---C-AACCCCGCCAT--CAT---ACGATT-TTG--T---CAATTCA-TTTAAT-AA---TTTTAAACATAAATGAGC-CTCtctgctcattatgac
gi|1 : gataatcacataatttggcaactatattatgtcaatttatcatgagtgactggtacatgagtgtaataaactcatgccatattatttttatattagagttatatcattaccgatcaaccgtacaactgactctgctttcgtaggtaaaatgaggaactttttccggcttgtcggcgcatctaaatgacgtcgcattgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcGGATCTTA-CTTGAGTT---CTCATTT---ATTATTA-AATA-T---TT-A-T-T---AAACGAGTTGG-CA-----A-AA----A-TAC-----ATTA-----TGTTA-G------------GCTCTG-CCT--CAT-------TT-TTA--C---CAACAAG-TTAAAT-AAAGTCATCAACAATAAATGAGCACCCATGT
gi|7 : aaacaactcatattttttaaaccagtatgacaccattagttttataaatatcttcttcaaataatttaaggtgcagagtgtaaaatatccacaatatattttttgtattaacctagtgtaatgtctcttctgatacattgctcagtgttaaattctgtataacttggctcttgtatgtaaaatgccaaattgctatctgatttgcccacatatgtaaatgagacaattttcatggttagattttgagacgttttgtcatacaatgattcgcagaaactagtatgccctattcttctgtaattcctcatagaggtgatctgataaattaatggtaaaattggaccattttccaaagttatttgataaatatattgtaGGATCTTA-C---AAGAGTGCTCGTTT---ATTATTG-A--A-T---TT-A-C-C---AAA-GAGTTGG-TA-----ACAA-T--A-TAT-----TAT--------GCA-AG----G---C-TCTGTCA-CACATCATACCA-GTTT-TG---C---CGACGAG-TT-AAT-AA---ATTAAATAATAAATGAGAACGGATGTAAGATTTTC--TTTATtctaaatctcattacacttgtatataaatttctccatatggattatgc
gi|4 : taatgatggtttaacaagtaccttatataataaattataggatttataacttcctatggaagagtgtaataaacgcaagacgttttcttatattaactcagtgtaatatcactaccgattcatcgttcggagttttccgtataactcgtctttcgtacgtaaattaccgaactattttacgatttatgactaatgtcgattcgtcaaagttattttgagacattacacgtcatacgatgactgaccgaaattaatgacactccacgtaactagaggttattttagaaataaattgtaattgtattttttttcctgatgtatgtgGAATCTTA-C---AAGAATGCTTATTT---ATTATTG-A--A-T---TT-A-T-T---AATTGAGTTGG-CA-----A-CA-T-T--TAT-----TATGC----------GA----GGCTC-GGCCGAG-CATCATAT---C-AATT-TTG--C---CAACGAGTTTTAAG-GA---TTAAAAAAATAAATGGGCACGAATGCAAGATTCTT--TGTATtcaatatatagctagctagaggcg
gi|8 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtactatttaatgtacaaataaaatgaataacataagttattgttggtgcagagtgtaataaactcataattttgatattaacctggtgtaatactgtcatgtatctctaccgcgtcaacgtgcagcggacttgtccgaacttatcaataacctcgatttgtggtgttcttcccggacgttacgtcatactatgactgacggaaactaatacgcgcgttttttctcatcctgatagagctgatgtgtaaaataaatagtaatgtagatctaccatttacctgagatgtgtgGGATCTTA-C---ATGAGCGCTAATTT----TTATTG-A--A-T---TT-A-T-T---AAACGAGTTGA-CA-----A-AA-T--A-TATCATGCGATGC---TCTGTC-GA----G---tccatttattattatcaaaccagtcatgtt
gi|9 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaaGAATCTTA-C---ATTTGTCCTTGTTT---GTTATTG-A--A-T---TT-A-T-T---AAA-TCATTTG-GC-----A-AA-G-AA-TAC------ATTC---T---TA-GA---------------TG-CATTATAT---A--ATT-TTTG-C---TAA---G-TTTAAT-AA---ATTTATTGCTAAATGAGCAcatatatatc
gi|9 : tatagtttacagtgcaaaagtaataaaccatgacatatttttgatattaactaccgattcattactccgtgttgtctgtataacttggcacttatatatgttaaatatggagctttttttcggacttgctcgaatatcttaatcatgttaatttattaaatgcaatgactgatagaaaccaatctattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattca-C---ATTCATGCTCATTT---AGCAATA-A--A-T---TT-A-T-T---AAACT--TAGC-AA-----A-AA-T-TA-TAT-----AATGCA--TC--TA--A----G----------------AATGT---A-TTCT-TTG--C---CAAATGA-TTTAAT-AA---ATTCAATAACAAACAAGGACAAATGTAAGATTCTC--CATACAtccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
gi|3 : tatagtttacagtgcaaaagtaataaaccatgacatatttttgatattaactaccgattcattactccgtgttgtctgtataacttggcacttatatatgttaaatatggagctttttttcggacttgctcgaatatcttaatcatgttaatttattaaatgcaatgactgatagaaaccaatctattatttatagaatcttggaaaaacaatttttcttattccctgcagagctcGTGCTCATTT---ATAATTC-A--G-T---TT-ACT-C---A---TCG--GC-AA-----A-AA-T-GA-TAT-----Aggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
gi|13 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggttattaatatagatttatcacataatttgcagtgcaagagtgtaataaacccatgacatatttcttatataaacaaagtgtaatatcacttccaattcatcgctcagcaattcccatacaacttgcacataaaatgccaaactactttctgacttgtccaaacatataaaattaatgcagttgattcgtcatggtaaaatgacattatttggagactttgtgtaatgcaatgactggtgaaaacgtatttgcccatttttttctaaatttttatagcggtgatcattctgaaaagaaatagtaaatgttccattttcttgagtacgtgattaaaaGTGCTCATTT---AGCACTG-A--A-T---TTTA-T-T---AAACGAGTTCA-TA-----A-AA-------AT-------TAT---T--GTG-GG----A---CGCTCTTCC-GAT--CAT-------TT-TTG--C---CAACGAA-TTTAAT-AA---ATTCAATAATAAATGAGCAC-GATATAAGATtttttggacaattcgttaaatatagtcagtaataaatgagcactcacataagattctttatatatcattctgttatgaaattacatg
gi|6 : agctgaaaaattgtatgttcgtcatttcctgagttatGTTCTCGTTT---ATTATTG-A--A-TTGATT-A-T-T---AAATGAGATAG-CAAAATTA-AA-T-GA-CAT-----AATAT---TTGCTA-ttatataagatcctgtatatattttctgctcattatgac
gi|14 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaaGTGCTCACTT---ATTATTA-A--A-T---TC-A-T-T---AAAAACATTGG-GG-----A-AA--------------AATAT---TTTTTGCGA----G------GCTCTA-CTTAATAT-----CATT-TTTG-C---CAACAAA-TTCGAT-AA---ATTAAATAATAAATGAtcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|16 : aattggtcaactttctaaattagttttgtaatttccatcccattcGTGTTTATTT---ATTATCT-C--A-T---TT-A-T---------TC-TTGT-CA-----A-AA-T-GA-TAC-----AATGC---TCGGCA-G-----------TGCATCA-CATAATAT------ATT-TT---TAA-CAACTCG-ttgtgcaagctcctgtagattctgtgtctcaca
gi|14 : tttcctgagttatCTCATTT---ATTATTT-A--A-T---TT-A-T-C---GAATTTGTTGGCAA-----A-AA-T-GA-TAT-------TA------AGTA-GA-----------GCCTCG-CAAAAAAT------ATT-TTTCCC---CAATGTT-TTTAAT-GA---ATTTAATAATAAGTGAGCACTTGTGCAAGCTCCTG--TAGAT-TCTG
gi|3 : aattggtcaactttctaaattagttttgtaatttccatcccattAT---A-TATT-TT---TGGACAATTCG-TTAAAT-AT---AGTCAGTAATAAATGAGCACTCACATAAGATTCTT--TATATATCtgtctcaca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ACTTTATTCAATTTGTTAATAAAAATGCCAAAACCTGTGACATCTGCATTTATGCAACTTGTTTAATTAAT
Alignments
lowQualScore : 1111 11 111111 111111 2222222 1 3333333 2222 11111 2222222222222222222222222222222 1111111111111 1111111 5555555555555555555555555555555555555555555555 1111111 44444444444444444444 2222222222 11111111111111111111 1 33333333333 111111111 11111 5555555555555555555555555555555555555555 111
lowQualScore : 2 3 6 2222 11 666666 3 111111 1111111 5 0 7777 1111111 3 888888 33 33 88888 2 2222 3 2 2 0 00000 0 0 44 0 1 1 1 3 8888888888888888888888888888888 77777 0 777777 3 5555555555555 1111111 6666 2222222222222222222222222222222222222222222222 7777 55 55 55 5555555 888 88888888888888888888 444 4 0 4 66 2222222222 1 77777777777777777777 2 2 4 3 1 1 3 99999999999 55 2 2 2 5555 2 888 2 222222222 3 33 2 00000 3333333333333333333333333333333333333333 33 888 3 2 3 1 3 111 666 3
lowQualScore : . . . .... .. ...... . ...... ....... . . .... ....... . ...... .. .. ..... . .... . . . . ..... . . .. . . . . . ............................... ..... . ...... . ............. ....... .... .............................................. .... .. .. .. ....... ... .................... ... . . . .. .......... . .................... . . . . . . . ........... .. . . . .... . ... . ......... . .. . ..... ........................................ .. ... . . . . . ... ... .
lowQualScore : 5 7 7 0000 00 555555 3 222222 7777777 6 1 7777 3333333 1 222222 99 22 11111 9 3333 0 9 9 6 88888 8 6 22 8 9 9 1 1 2222222222222222222222222222222 77777 8 999999 1 2222222222222 2222222 1111 3333333333333333333333333333333333333333333333 4444 55 55 00 4444444 888 66666666666666666666 222 4 1 1 11 7777777777 0 66666666666666666666 4 4 3 6 3 4 6 66666666666 66 9 9 9 6666 9 999 9 000000000 5 11 9 00000 2222222222222222222222222222222222222222 55 555 3 3 3 6 6 444 222 0
consensus : NNNNNNNNNNNNNTAATNATGNTTTAACAANTACC-TTA--TT---TA-TAAAT-ATAG-ATT-------TATTATCACATAATTTAC----GGTGCAGGAGTGTAATAAACC---C--A-TGAC------ATATT--TTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTA--TAGAGGTGA----TNTGNAAAATAAATGG-------T--AA-----A--TGNACCANTTT-CCTGAGTTATGTGA-TA-AA-A-GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TAT-AATGC---TCGGCAGA----G-C-GCCTCG-CATAATATA-A-T-TTTGCC-AACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCNAGAG
Reference ( family-42 ) : NNNNNNNNNNNNNTAATGATGGTTTAACAAGTACC-TTA--TT---TA-TNAAT-ATAG-ATT-------TATNATCACATAATTTAC----GGTGCAGGAGTGTAATAAACC---CT-A-TGAC------ATATT--TTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------NAAT---ATG-------------------CCNNATTTTT-TCTCGTTCTTTA--TAGAGGTGA----TNTGTNAAATAAATNG-------T--AA-----A--TGNACCANTAT-CCTGAGTTATGTGA-TA-AA-A-GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TAT-AATGC---TCGGTAGA----G-C-GCCTCG-CATAATATA-A-T-TTTGCC-AACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCTAGAG
gi|1 : ACCATTAGTTT---TA-TAAAT-AT----CT-------TCT--TCAAATAATTTAA----GGTGCAG-AGTGTAAAATATC---C--A-CAAT------ATATT--TTTTGTATTAACCTA--GTGTAAT-G-TCTCTTCTGATA-CATTGCT-CAGTGTTAAATTCTGTATAACTTGGCTCT--TGTATGTAAAATGCCAAATTGCTATCT-GATTTG----------CC------------------CACATA-----TGTA-----AA-TGAGACAATTTTCATGGTTA----G-A----TTTTGAG--------------------A--C----GTTTTGTC-----A---TA--CAATGAT--TC-GCAGAAAC------TAGT---ATG-------------------CCCTATTCTTCTGTAATTCCTCA--TAGAGGTGA----TCTGATAAATTAATGG-------T--AA-----AATTGGACCATTTT-CCAAAGTTATTTGA-TA-AATA-TATTGTAACATGGGTGCT-CATTT-A-TTGTTGATGACT---T-TATT---T----AACTTGTTGGT-A-----AAA------AT-GA--------GGCAGA----G-C---CTAA-CATAATGTA-T-T-TTTGCC-AACTCGTTTAAT-AAAT-ATTTAATAATAAATGAGAACTCAAGTAAGATCCTC--TAAATCTC
gi|10 : aaacaactcatattttttaaaccagtatgacA--TC---TC-TAAAC-A-AA-ACT-------TATTATCACATAACATAC----GGTGCAGGAGTGTAA--AACA---CTCA-TGACCATTTTATATT--TATT-TATTAACCTA--GTATAAT-AAT---TACCAAAT-ATTCGC--CGGCGCT----TCGGTAAAGCCCGTATAT--TGTACGTTAAATTCCTATCAACTTTTC-GACTTT----------CCGGAACATCTTACTACCATCGAATAGTCATTGTA-----AAATAG---------C---GTTATTTTG-AAACGTT-------------------------A--C----GT-----C-----A---AA--CGATGAC--CA-CCGGAATC------TTAT---ATG-------------------CCTGACCTTT-TC---TTC-TTA--TAGAGGTGA------------------GG-------T--A-------------------T-CCCGAGTTATGTGA-TA-AA-------CTTACA--CGTGCT-CATTT-A-TAATTG-----T---TATATT---ATGCCAACTCGTT--T-A-----ATA--GA-TTT-AATGattacacttgtatataaatttctccatatggattatgc
gi|11 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaACATAATT-AT----GGCGCAGGAGTGTAATATACTG--CT-G-TGAC------AGGTT--TT---TATTAACCAA--ATGTAACAA-AC-CTGCTGATT-CATTGCT-T-GTGCTG---TCCATATAACTCTCTTCT--C--ACTT-AAATTCCATGTTATTTTAC-ATCTTG----------AT------------------GGAACA-----TAAG-----AA-TGT---------T---GTC-----A-A----TT-------------------------AATC----GT-----CTTTGTA---AA--TGATGAT--TA-TTTGAAag
gi|12 : gtatcgaacatcatcacatgtgttgtacttacgGAGAGCAAGAAACT---C--A-TGGC------CTATT------ATACTTGTTTA--ATA-AAT-A-TA-CTATTTAGT-CATTGCT-TGGCTTTT---ATCGTATAACTCTGCACT--CGTACCTAAA-TACTGAGCAACTTTCC-AACCTA----------CC------------------AAAACA-----TATA-----AA-TGA---------C---ATT-----G-A----TT----------------------------T----GT-----C-----A---ttggtgttgagcaatgactgatggaaacaaatgtatactagttcatactgttgtttgttaaagcatattggaagaccaatttttttcttgcgtttcaaacagatacaa
gi|13 : atatactgatgacatatggcatagtcctAAATTG-------T--AT-----G--TTCGTCATT-T-CCTGAGTTAT---------------ATCTTATAT-CGTGCT-CATTT-A-TTATTGA--A-T---T-TATT---A----AATTCGTTGGC-A-----AA----------AATGA---TCGGAAGA----G-C-GTCCCA-CA----ATA-ATT-TTTATG-AACTCGTTTAATAAA---ATTCAGTGCTAAATGAGCACTTATATAAGATCCTG--TATATATTTtggtaaaatggcgttatttggtggaattacataaaacaatgactggtga
gi|14 : agctgaaCT-CATTT-A-TTATTTA--A-T---T-TATC---G----AATTTGTTGGC-A-----AAAATGA-TATTAA---------GTAGA----G-C---CTCG-CAAAAAATA-T-T-TTTCCCCAATGTTTTTAAT-GA---ATTTAATAATAAGTGAGCACTTGTGCAAGCTCCTG--TAGAT-TCTGtctgctcattatgac
gi|15 : aattggtcaactttctaaattagttttgtaatttccatcccattC------ATATT--ATTTATATGAACCTT--GTGTAAT-A-T-------G-----ATCGCT-CGGCGTTT---TCCGTCTAACTCTGCTCT--CGTTCGTTAAGTGTTAAACTTCTTTCC-GACTTG----------CC------------------TTAGTA-----CAAA-----AA-TGA---------C---GTC-----G-A----TT-------------------------G--CCAGGGT-----A-----A---AA--TGACG-C--TA-tgtctcaca
gi|16 : ctGTGTT-TATTT-A-TTATCTC--A-T---T-TATT----------CTTGT---C-A-----AAA-TGA-TAC-AATGC---TCGGC--A----G-T-GCATCA-CATAATATA-T-T-TTTAAC-AACTCGtttcctgacgtaacatc
gi|17 : tttcctgagttatAAAC-------A-TGAC------ATATT--CTTGATATT----------GTA------C-CTATGGAAT-CATCACT-TGTTGTGG---TCCATATAACT
gi|2 : taTAATTATGCTTTAATATTT-CC-TTA--TTGCTTA-TGAAT-GTAG-ATCCAGTATATATAATCACATAATTTAC----GGTGCAGGAGTGTAATAAACCGAACT-AATGAC------ATATT--TTTTGTATTAACATA--GTGTAAT-A-TCTCTTTCGATT-CATCGCT-CGGTGTTG---TCCGTATAACTCGGCTCT--CGTACGTAATTTGTCGAGGTACTTTCC-GACTTG----------CT------------------TGGATA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---CA--TGATGAT--TA-CCGGAAAC------AAAT---ATG-------------------CCAGATTTGT-TCTCGTTCTTTA--AAGAGGTTA----TCTGTTTAATATATGG-------TAAAA-----A--TGAAAAAAAAT-CCTGAATTATGTGA-TA-AA-ACGAATTTTACAGTCGTGCT-CATTT-A-TTGTTGA--A-T---T-TATC---A----AATTCGTTGGG-A-----AAA-TGA-TAT-AATAC---TCGGTAGA----GCC-GCCTCG-CATAACATAGA-T-TTT-CC-AACTTGTTCAAT-AA---CTTCAATAATAAATAAACACTCATGTAAAATCCTC--TATATATCTGACGAGAGttctaacttgtgatgtcaaata
gi|3 : actaagttaaagaT---TA-TTAAT-ATAG-ATT-------TAT---CACATAATTTGC----AGTGCAAGAGTGTAATAAACC---C--A-TGAC------ATATT--TCTTATATAAACAAA--GTGTAAT-A-TCACTTCCAATT-CATCGCT-CAGCAATT---CCCATACAACTTG---------CACATAAAATGCCAAACTACTTTCT-GACTTG----------TC------------------CAAACA-----TATAAAATTAA-TGC---------A---GTT-----G-A----TT----------------------------C----GT-----C-----ATGGTA--AAATGACATTATTTGGAGACTTTGTGTAATGCAATGACTGGTGAAAACGTATTTGCCCATTTTTT-TCTAAATTTTTA--TAGCGGTGATCATTCTG-AAAAGAAATAG-------T--AA-----A--TGTTCCATTTT-CTTGAG-TACGTGATTA-AA-A--------------GTGCT-CATTT-A-TAATTCA--G-T---T-T------------ACTCATCGGCAA-----AAA-TGA-TAT--ATTT---TTGG-------------------------ACA-A-T-T----------CGTTAAAT-AT---AGTCAGTAATAAATGAGCACTCACATAAGATTCTT--TATATATCaacgcgagtatctagtctaacgttg
gi|4 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggATAACATAAGTTATTGTTGGTGCAG-AGTGTAATAAACT---C--------------ATAAT--TTTGATATTAACCTG--GTGTAAT-A----CTGTC-ATG-TATCTCTACCGCGTCA----ACGTGCAG--CGGA-CT--TGTCCG-AACTTATC-AATAACCT--C-GATTTGTGGTGTTCTTCC------------------CGGACG-----T-T-----------A---------C---GTC------------------------------------------------------------A---TA--CTATGAC--TG-ACGGAAAC------TAAT---ACG--------------------CGCGTTTTT-TCTCA-TCCTGA--TAGAGCTGA----TGTGTAAAATAAATAG-------T--AATGTAGA--TCTACCATTTA-CCTGAGATGTGTGA-TACAA-A-GAATCTTGCATTCGTGCC-CATTT-ATTTTTTTA--A-TCC-T-TA-----A----AACTCGTTGGC-A-----AAATTGA-TAT-GATGC---TCGGCCGA--------GCCTCG-CATAATA-A-A-T-GTTGCC-AACTCAATTAAT-AA---ATTCAATAATAAATAAGCATTCTTGTAAGATTCTC--CATTTATattctgttatgaaattacatg
gi|5 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtactatttaatgtacaaataaaatgaATAATTTGGCAACTA----TA--TT---------AT-GTCA-ATT-------TATCATGA-GTGACT-------GGTACATGAGTGTAATAAACT---C--A-TGCC------ATATTATTTTTATATTA-------GAGTTAT-A-TCATTACCGATC-AACCGTA-CAAC-------------TGACTCTGCTTT--CGTAGGTAAAATGAGGAACT-TTTTCC-GGCTTG----------TC------------------GGCGCA-----TCTA-----AA-TGA---------C---GTC-----GCA----TT-------------------------tattatcaaaccagtcatgtt
gi|5 : gataatcacATCCTT-GCTCGTTTTATA--TAGAAATTA----CTT-TAAAATAAATGT-------C--AT-----A--TGTACCAATGT-TCTTAGTT-----A-TA-AA-ATGAACCATACAATCGTGCT-ATTTT-A-TTATATA--T-T---T-TTTTTTAA----AACTTGTTTGC-AC----AAA-AGAGTAT-TATGCACAACGATA-ATTTTG-CAACCCCGCCATCATACG-A-T-TTTGTC-AATTCATTTAAT-AA---TTTTAAACATAAATGAGC-CTCgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcttagttataaaatgaaccatacaatcgtgctattttattatatatttttttttaaaacttgtttgcacaaaagagtattatgcacaacgataattttgcaaccccgccatcatacgattttgtcaattcatttaataattttaaacataaatgagcctc
gi|6 : gataatcacataatttggcaactatattatgtcaatttatcatgagtgactggtacatgagtgtaataaactcatgccatattatttttatattagagttatatcattaccgatcaaccgtacaactgactctgctttcgtaggtaaaatgaggaactttttccggcttgtcggcgcatctaaatgacgtcgcattgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatTTACTACGTAATTTAT----TGTGCAGGAATGTAATAAACC----T-A-TGAC------ATGTC--TTTGTTATTAAATTATAGTGTAAT-A-TC-A---CGATTTCTTCCCT-CG-TGTAA---ACCGTATAACTTGACTCT--TGTACATACAATGCAAAACGACTTTCT-GTCTTA----------CC------------------CGAAAA-----TATA-----TA-AGA---------C---ATA-----A-A----TT-------------------------A--
gi|6 : attaattTTT-TCTTGTTCCTTA--GAAAGATGA----AATGAAAAATTAATGGAACAATTT--AA-----G--TAAATAAGTGT-ACAATGTT-TGTG-------------TGTTACATTCA-----CATTTCA-TTACT----A-T---T-TAAT---A-------------GC-A-----AA------TAT-TATG-----------------------TC------ATTTA-A-T-TTTGCT-ATCTCATTTAAT-AATCAATTCAATAATAAACGAGAACTCATGTAatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagcaaatattatgtcatttaattttgctatctcatttaataatcaattcaataataaacgagaactcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|6 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttg-CCAGGGTAATGCTA-TA-AT-A-GA----TACATGAGTTCT-CGTTT-A-TTATTGA--A-TTGAT-TATT---A----AATGAGATAGC-AAAATTAAA-TGA-CAT-AATAT---TTGCTAtctattatagcattaccctggtttggagactttccatgttcat
gi|7 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaaTAATGATGGTTTAACAAGTACC-TTA--TA---TAATAAATTATAGGATT-------TAT--------AACTTCC----TATGGAAGAGTGTAATAAACG---CA-A--GAC------GT-TT--TCTTATATTAACTCA--GTGTAAT-A-TCACTACCGATT-CATCGTT-CGGAGTTT---TCCGTATAACTCGTCTTT--CGTACGTAAATTACCGAACTATTTTAC-GATTT-------------------------------------------ATG-----AC-TAA---------T---GTC-----G-A----TTCGTCAAAGTTATTTTGAGACATTACA--C----GT-----C-----A---TA--CGATGAC--TG-ACCGAAAT------TAAT-----G-------------------ACAC-----T-CCACGT-----AACTAGAGGTTA----TTTTAGAAATAAATTG-------T--AA-----T--TGTATTTTTTTTCCTGATGTATGTGA-TA-AAGA-AAATCTTACATCCGTTCT-CATTT-A-TTATTTA--A-T---T-TATT---A----A-CTCGTCGGC-A-----AAACTGG-TAT-GATGT---GTGACAGA----G-C---CTTG-CATAATATA-T-T-GTTACC-AACTC-TTTGGT-AA---ATTCAATAATAAACGAGCACTCTTGTAAGATCCTCAATATATAGCTAGCTAGAGtttggagactttccatgttcat
gi|8 : TTATCACATAATTTAC----GGTGCATGAGTGTAATAA-CC---CA-A-TGAC------ATA-T--TTTGATATTAACCTA--GTGTAAT-G-TCACTTCCGAAC-CCTCACT-CGGTGATT---TCCGTATAACTCAGCTCT--CGTACGCAATATGCTGAAGTGCTTTCC-AACTTG----------CC------------------CGGACT-----CATG-----AA-TG--------------GTC-----G-A----TT-------------------------gcg
gi|8 : tgatatcacgtatcgaacgtttataacgtatttgtat-A----TT-------------------------A--C----AT-----C-----A---TA--CGATGAC--TA-ACGGATAC------TAAA---ATG-------------------AACAATTCTT-CCTCATTCTTTA--TAGAGGTGA----CATGAAAAATAAATTG-------T--AA-----A--TGCACCAATTT-CCTGAGTCATCTGA-CA-------------ACATTTGCATTACATTT-A-TTATTTA--A-----T-TAT---------------------A-----AAA-------------C---TCGACAGA----G-C-A--TCG-CATGATAT--A-T-TTTGTC-AACTCGTTTAAT-AA---ATTCAATAA-AAATTAGCGCTCATGTAAGATCCCA--TATATATCtgttatgataatacacacattaaatttgttttagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaactcgacagagcatcgcatgatatattttgtcaactcgtttaataaattcaataaaaattagcgctcatgtaagatcccatatatatc
gi|9 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacATAGTTTAC----AGTGCAAAAGT--AATAAACC------A-TGAC------ATATT--TTTGATATTAAC-------------------TACCGATT-CATTACT-CCGTGTTG---TCTGTATAACTTGGCACTTATATATGTTAAATATGGAGCTTTTTTTCGGACTTG----------CT------------------CGAATA-----TCTT-----AA-TCA---------T---GTT-----A-A----TT----------------------------T----AT-----T-----A---AATGCAATGAC--TG-ATAGAAAC------CAAT---
gi|9 : tCATTCATGCT-CATTT-A-GCAATAA--A-T---T-TATT---A----AACT---TAGC-A-----AAAATTA-TAT-AATGCA--TC--TA-A----G-------------AATGTA-T-TCTTTGCC-AAATGATTTAAT-AA---ATTCAATAACAAACAAGGACAAATGTAAGATTCTC--CATACActattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattcatgctcatttagcaataaatttattaaacttagcaaaaattatataatgcatctaagaatgtattctttgccaaatgatttaataaattcaataacaaacaaggacaaatgtaagattctccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTTTATTCAATTTGTTAATAAAAATGCCAAAACCTGTGACATCTGCATTTATGCAACTTGTTTAATTAAT
Alignments
lowQualScore : 11 1111 3333333333333333333333 1111 2222 11111 2222222222222222222222222222222 66666666666666666666666666666666666666666666666666 111111 44444444444444444444 1111111111 11111111111111 444444444444444 111111111 11111 555555555555555555555555555555555555 111
lowQualScore : 1 88 1 1 0000 77 888 5 5 5 5555555555555555555555 1111 999999999 888888 33 33 88888 2 2222 3 2 2 0 00000 0 0 44 0 1 1 1 3 8888888888888888888888888888888 77777 0 777777 3 44 6666 11111111111111111111111111111111111111111111111111 99999 7777 55 55 55 444444 888 88888888888888888888 444 4 0 2 0 7777777777 0 55 66666666666666 6 3 666 1 3 111111111111111 55 2 2 2 5555 2 888 2 222222222 3 33 2 00000 222222222222222222222222222222222222 55 33 888 3 2 3 1 3 111 666 1
lowQualScore : . .. . . .... .. ... . . . ...................... .... ......... ...... .. .. ..... . .... . . . . ..... . . .. . . . . . ............................... ..... . ...... . .. .... .................................................. ..... .... .. .. .. ...... ... .................... ... . . . . .......... . .. .............. . . ... . . ............... .. . . . .... . ... . ......... . .. . ..... .................................... .. .. ... . . . . . ... ... .
lowQualScore : 0 33 0 0 2222 99 888 0 0 0 6666666666666666666666 4444 888888888 222222 99 22 11111 9 3333 0 9 9 6 88888 8 6 22 8 9 9 1 1 2222222222222222222222222222222 77777 8 999999 1 22 5555 11111111111111111111111111111111111111111111111111 11111 4444 55 55 00 444444 888 66666666666666666666 222 4 1 0 8 4444444444 7 55 88888888888888 3 6 444 4 6 555555555555555 66 9 9 9 6666 9 999 9 000000000 5 11 9 00000 999999999999999999999999999999999999 77 55 555 3 3 3 6 6 444 222 0
consensus : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATATT--TTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-T--GACG----TC-------G-A----TT-------------------------A--C-----GTC-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATT-TTTTCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTACCANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TAT-AATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTTGCC-AACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
Reference ( family-42 ) : NNNNNNNNNNNNNTAATNA--TGNTTTAACAANTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATATT--TTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-T--GACG----TC-------G-A----TT-------------------------A--C-----GTC-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATT-TTTTCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGNACCANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TAT-AATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTTGCC-AACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCNAGAG
gi|1 : ACCATTAGTTT---TA-TAA-AT-AT----CT-------TCTT---CAAATAATTTAA----GGTGCAG-AGTGTAAAATAT--C---C--ACAAT------ATATT--TTTTGTATTAACCTA--GTGTAAT-G-TCTCTTCTGATA-CATTGCT-CAGTGTTAAATTCTGTATAACTTGGCTCT--TGTATGTAAAATGCCAAATTGCTATCT-GATTTG----------CC------------------CACATA-----TGTA-----AA-TGAGACAATTTTCATGGTTAG-A----TTTTGAG--------------------A--CGTTTTGTC-----A---TA--CAATGAT--TC-GCAGAAAC------TAGT---ATG-------------------CCCTATTCTTCTGTAATTCCTCATAGAGGTGA----TCTGATAAATTAATGGT--AA-----AATTGGACCATTTT-CCAAAGT---TATTTGA-TA-AATA-----TATTGTAACATGGGTGCT-CATTT-A-TTGTTGATGACT---T-TATT---T----AACTTGTTGGT-A-----AAA------AT-GA-----GGCAGA-----------GCCTAA-CATAATGTA-T-T-TTTGCC-AACTCGTTTAAT-AAAT-ATTTAATAATAAATGAGAACTCAAGTAAGATCCTC--TAAATCTC
gi|10 : aaacaactcatattttttaaaccagtatgacA--TC---TC-TAA-AC-A-AA-ACT-------TATT-ATCACATAACATAC----GGTGCAGGAGTGTAAAACAC--T---C--ATGACCATTTTATATT--TATT-TATTAACCTA--GTATAAT-AAT---TACCAAAT-ATTCGC--CGGCGCT----TCGGTAAAGCCCGTATAT--TGTACGTTAAATTCCTATCAACTTTTC-GACTTT----------CCGGAACATCTTACTACCATCGAATAGTCATTGTA-----AAAT--AGCG----TTATTTT--G-AAACGTT-------------------------A--C-----GTC-----A---AA--CGATGAC--CA-CCGGAATC------TTAT---ATG-------------------CCTGACC-TTTTC----TTCTTATAGAGGTGA------------------GGT--A-------------------T-CCCGAGT---TATGTGA-TA-AA-----------CTTACA--CGTGCT-CATTT-A-TAATTG-----T---TATATT---ATGCCAACTCGTT--T-A-----ATA--GA-TTT-AATGattacacttgtatataaatttctccatatggattatgc
gi|11 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaTT-ACGACATAATT-AT----GGCGCAGGAGTGTAATATACTGC---T--GTGAC------AGGTT--TT---TATTAACCAA--ATGTAACAA-AC-CTGCTGATT-CATTGCT-T-GTGCTG---TCCATATAACTCTCTTCT--C--ACTT-AAATTCCATGTTATTTTAC-ATCTTG----------AT------------------GGAACA-----TAAG-----AA-T--GTTG----TC-------A-A----TT-------------------------AATC-----GTCTTTGTA---AA--TGATGAT--TA-TTTGAAag
gi|12 : gtatcgaacatcatcacatgtgttgtacGAGAGCAAGAAAC--T---C--ATGGC------CTATT------ATACTTGTTTA--ATA-AAT-A-TA-CTATTTAGT-CATTGCT-TGGCTTTT---ATCGTATAACTCTGCACT--CGTACCTAAA-TACTGAGCAACTTTCC-AACCTA----------CC------------------AAAACA-----TATA-----AA-T--GACA----TT-------G-A----TT----------------------------T-----GTC-----A---ttggtgttgagcaatgactgatggaaacaaatgtatactagttcatactgttgtttgttaaagcatattggaagaccaatttttttcttgcgtttcaaacagatacaa
gi|13 : atatactgatgacatatggcatagtcctAAATTGT--AT-----G--TTCGTCA-TTT-CCTGAGT---TAT-------------------ATCTTATAT-CGTGCT-CATTT-A-TTATTGA--A-T---T-TATT---A----AATTCGTTGGC-A-----AA----------AATGATCGGAAGA-------G-C-GTCCCA-CA----ATA-ATT-TTTATG-AACTCGTTTAATAAA---ATTCAGTGCTAAATGAGCACTTATATAAGATCCTG--TATATATTTtggtaaaatggcgttatttggtggaattacataaaacaatgactggtga
gi|14 : agctgaaCT-CATTT-A-TTATTTA--A-T---T-TATC---G----AATTTGTTGGC-A-----AAAATGA-TATTAA------GTAGA-------G-C---CTCG-CAAAAAATA-T-T-TTTCCCCAATGTTTTTAAT-GA---ATTTAATAATAAGTGAGCACTTGTGCAAGCTCCTG--TAGAT-TCTGtctgctcattatgac
gi|15 : aattggtcaactttctaaattagttttgtaatttccatcccattC------ATATT--ATTTATATGAACCTT--GTGTAAT-A-T-------G-----ATCGCT-CGGCGTTT---TCCGTCTAACTCTGCTCT--CGTTCGTTAAGTGTTAAACTTCTTTCC-GACTTG----------CC------------------TTAGTA-----CAAA-----AA-T--GACG----TC-------G-A----TT-------------------------G--CCAGG-GTA-----A---AA--TGACG-C--TA-tgtctcaca
gi|16 : ctGTGTT-TATTT-A-TTATCTC--A-T---T-TATT----------CTTGT---C-A-----AAA-TGA-TAC-AATGCTCGGC--A-------G-T-GCATCA-CATAATATA-T-T-TTTAAC-AACTCGtttcctgacgtaacatc
gi|17 : tttcctgagttat---C--ATGAC------ATATT--CTTGATATT----------GTA------C-CTATGGAAT-CATCACT-TGTTGTGG---TCCATATAACT
gi|2 : taaaaTAATTA--TGCTTTAATATTT-CC-TTA--TTGCTTA-TGA-AT-GTAG-ATCCAGTATATATA-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--CGAACTAATGAC------ATATT--TTTTGTATTAACATA--GTGTAAT-A-TCTCTTTCGATT-CATCGCT-CGGTGTTG---TCCGTATAACTCGGCTCT--CGTACGTAATTTGTCGAGGTACTTTCC-GACTTG----------CT------------------TGGATA-----TATA-----AA-T--GACG----TC-------G-A----TT-------------------------A--C-----GTC-----A---CA--TGATGAT--TA-CCGGAAAC------AAAT---ATG-------------------CCAGATT-TGTTCTCGTTCTTTAAAGAGGTTA----TCTGTTTAATATATGGTAAAA-----A--TGAAAAAAAAT-CCTGAAT---TATGTGA-TA-AA-AC----GAATTTTACAGTCGTGCT-CATTT-A-TTGTTGA--A-T---T-TATC---A----AATTCGTTGGG-A-----AAA-TGA-TAT-AATACTCGGTAGA-------GCC-GCCTCG-CATAACATAGA-T-TTT-CC-AACTTGTTCAAT-AA---CTTCAATAATAAATAAACACTCATGTAAAATCCTC--TATATATCTGACGAGAGttctaacttgtgatgtcaaata
gi|3 : actaagttaaagaT---TA-TTA-AT-ATAG-ATT-------TAT----CACATAATTTGC----AGTGCAAGAGTGTAATAAAC--C---C--ATGAC------ATATT--TCTTATATAAACAAA--GTGTAAT-A-TCACTTCCAATT-CATCGCT-CAGCAATT---CCCATACAA-------CT--TGCACATAAAATGCCAAACTACTTTCT-GACTTG----------TC------------------CAAACA-----TATAAAATTAA-T--GCAG----TT-------G-A----TT----------------------------C-----GTC-----ATGGTA--AAATGACATTATTTGGAGACTTTGTGTAATGCAATGACTGGTGAAAACGTATTTGCCCATTT-TTTTCTAAATTTTTATAGCGGTGATCATTCTG-AAAAGAAATAGT--AA-----A--TGTTCCATTTT-CTTGAG----TACGTGATTA-AA-A------------------GTGCT-CATTT-A-TAATTCA--G-T---T-T------------ACTCATCGGCAA-----AAA-TGA-TAT--ATTTTTGG----------------------------ACA-A-T-T----------CGTTAAAT-AT---AGTCAGTAATAAATGAGCACTCACATAAGATTCTT--TATATATCaacgcgagtatctagtctaacgttg
gi|4 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggACTATT-TAA--TG---TA-CAA-AT-A-AA-ATG--------A---ATAACATAAGTTATTGTTGGTGCAG-AGTGTAATAAAC--T---C--ATAA-----------T--TTTGATATTAACCTG--GTGTAAT-A----CTGTC-ATG-TATCTCTACCGCGTCA----ACGTGCAG--CGGA-CT--TGTCCG-AACTTATC-AATAACCT--C-GATTTGTGGTGTTCTTCC------------------CGGACG-----T-T-------------ACG----TC----------------------------------------------------------A---TA--CTATGAC--TG-ACGGAAAC------TAAT---ACG--------------------CGCGTT-TTTTCTCA-TCCTGATAGAGCTGA----TGTGTAAAATAAATAGT--AATGTAGA--TCTACCATTTA-CCTGAGA---TGTGTGA-TACAA-A-----GAATCTTGCATTCGTGCC-CATTT-ATTTTTTTA--A-TCC-T-TA-----A----AACTCGTTGGC-A-----AAATTGA-TAT-GATGCTCGGCCGA-----------GCCTCG-CATAATA-A-A-T-GTTGCC-AACTCAATTAAT-AA---ATTCAATAATAAATAAGCATTCTTGTAAGATTCTC--CATTTATattctgttatgaaattacatg
gi|5 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtTAATCACATAATTTGGCAACTA----TA--TT----------AT-GTCA-ATT-------TAT------CATGAGTGACT---GGTACATGAGTGTAATAAAC--T---C--ATGCC------ATATTATTTTTATATTA-------GAGTTAT-A-TCATTACCGATC-AACCGTA-CAAC-------------TGACTCTGCTTT--CGTAGGTAAAATGAGGAACT-TTTTCC-GGCTTG----------TC------------------GGCGCA-----TCTA-----AA-T--GACG----TC-------GCA----TT-------------------------tattatcaaaccagtcatgtt
gi|5 : gaATC-CTTGCTCGTTTTATATAGAAATTA----CTT-TAAAATAAATGTC--AT-----A--TGTACCAATGT-TCTTAGT---T-----A-TA-AA-AT----GAACCATACAATCGTGCT-ATTTT-A-TTATATA--T-T---T-TTTTTTAA----AACTTGTTTGC-AC----AAA-AGAGTAT-TATGCACAAC-GATAATTTTG-CAACCCCGCCATCATACG-A-T-TTTGTC-AATTCATTTAAT-AA---TTTTAAACATAAATGAGC-CTCgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcttagttataaaatgaaccatacaatcgtgctattttattatatatttttttttaaaacttgtttgcacaaaagagtattatgcacaacgataattttgcaaccccgccatcatacgattttgtcaattcatttaataattttaaacataaatgagcctc
gi|6 : gataatcacataatttggcaactatattatgtcaatttatcatgagtgactggtacatgagtgtaataaactcatgccatattatttttatattagagttatatcattaccgatcaaccgtacaactgactctgctttcgtaggtaaaatgaggaactttttccggcttgtcggcgcatctaaatgacgtcgcattgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatTT-ACTACGTAATTTAT----TGTGCAGGAATGTAATAAAC--C---T--ATGAC------ATGTC--TTTGTTATTAAATTATAGTGTAAT-A-TC-A---CGATTTCTTCCCT-CG-TGTAA---ACCGTATAACTTGACTCT--TGTACATACAATGCAAAACGACTTTCT-GTCTTA----------CC------------------CGAAAA-----TATA-----TA-A--GACA----TA-------A-A----TT-------------------------A--
gi|6 : attaatt-TTTTCTTGTTCCTTAGAAAGATGA----AATGAAAAATTAATGG----A-----A-------CAATTT----AAGTAAATAAGTG--TA-CA-ATGTTTGTGTGTTACATTCA-----CATTTCA-TTACT----A-T---T-TAAT---A-------------GC-A-----AA------TAT-TATG-----------------------TC------ATTTA-A-T-TTTGCT-ATCTCATTTAAT-AATCAATTCAATAATAAACGAGAACTCATGTAatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagcaaatattatgtcatttaattttgctatctcatttaataatcaattcaataataaacgagaactcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|6 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttg-CCAGGGT---AATGCTA-TA-AT-A-----GA----TACATGAGTTCT-CGTTT-A-TTATTGA--A-TTGAT-TATT---A----AATGAGATAGC-AAAATTAAA-TGA-CAT-AATATTTGtctattatagcattaccctggtttggagactttccatgttcat
gi|7 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagTAATGA--TGGTTTAACAAGTACC-TTA--TA---TAATAA-ATTATAGGATT-------TAT---------AACTTCC----TATGGAAGAGTGTAATAAAC--G---C--AAGAC------GT-TT--TCTTATATTAACTCA--GTGTAAT-A-TCACTACCGATT-CATCGTT-CGGAGTTT---TCCGTATAACTCGTCTTT--CGTACGTAAATTACCGAACTATTTTAC-GATTT-------------------------------------------ATG-----AC-T--AATG----TC-------G-A----TTCGTCAAAGTTATTTTGAGACATTACA--C-----GTC-----A---TA--CGATGAC--TG-ACCGAAAT------TAAT-----G-------------------ACAC------TCCACGTAACT---AGAGGTTA----TTTTAGAAATAAATTGT--AA-----T--TGTATTTTTTTTCCTGATG---TATGTGA-TA-AAGA-----AAATCTTACATCCGTTCT-CATTT-A-TTATTTA--A-T---T-TATT---A----A-CTCGTCGGC-A-----AAACTGG-TAT-GATGTGTGACAGA-------G-C---CTTG-CATAATATA-T-T-GTTACC-AACTC-TTTGGT-AA---ATTCAATAATAAACGAGCACTCTTGTAAGATCCTCAATATATAGCTAGCTAGAGtttggagactttccatgttcat
gi|8 : --TT---TA-TAACGT-AT----TTG------TATTTATCACATAATTTAC----GGTGCATGAGTGTAATAACC--C---A--ATGAC------ATA-T--TTTGATATTAACCTA--GTGTAAT-G-TCACTTCCGAAC-CCTCACT-CGGTGATT---TCCGTATAACTCAGCTCT--CGTACGCAATATGCTGAAGTGCTTTCC-AACTTG----------CC------------------CGGACT-----CATG-----AA-T--G--G----TC-------G-A----TT-------------------------gcg
gi|8 : tgatatcacgtatcgaacg-A----TT-------------------------A--C-----ATC-----A---TA--CGATGAC--TA-ACGGATAC------TAAA---ATG-------------------AACAATT-CTTCCTCATTCTTTATAGAGGTGA----CATGAAAAATAAATTGT--AA-----A--TGCACCAATTT-CCTGAGT---CATCTGA-CA-----------------ACATTTGCATTACATTT-A-TTATTTA--A-----T-TAT---------------------A-----AAA-------------CTCGACAGA-------G-C-A--TCG-CATGATAT--A-T-TTTGTC-AACTCGTTTAAT-AA---ATTCAATAA-AAATTAGCGCTCATGTAAGATCCCA--TATATATCtgttatgataatacacacattaaatttgttttagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaactcgacagagcatcgcatgatatattttgtcaactcgtttaataaattcaataaaaattagcgctcatgtaagatcccatatatatc
gi|9 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacATAGTTTAC----AGTGCAAAAGT--AATAAAC--C------ATGAC------ATATT--TTTGATATTAAC-------------------TACCGATT-CATTACT-CCGTGTTG---TCTGTATAACTTGGCACTTATATATGTTAAATATGGAGCTTTTTTTCGGACTTG----------CT------------------CGAATA-----TCTT-----AA-T--CATG----TT-------A-A----TT----------------------------T-----ATT-----A---AATGCAATGAC--TG-ATAGAAAC------CAAT---
gi|9 : tCATTCATGCT-CATTT-A-GCAATAA--A-T---T-TATT---A----AACT---TAGC-A-----AAAATTA-TAT-AATGC-------A--------------TCT-AAGAATGTA-T-TCTTTGCC-AAATGATTTAAT-AA---ATTCAATAACAAACAAGGACAAATGTAAGATTCTC--CATACA---GGCAAAActattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattcatgctcatttagcaataaatttattaaacttagcaaaaattatataatgcatctaagaatgtattctttgccaaatgatttaataaattcaataacaaacaaggacaaatgtaagattctccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTTTATTCAATTTGTTAATAAAAATGCCAAAACCTGTGACATCTGCATTTATGCAACTTGTTTAATTAAT
Alignments
lowQualScore : 11 1111 3333333333333333333333 1111 2222 11111 2222222222222222222222222222222 1111111111111 1111111 5555555555555555555555555555555555555555555555 111111 44444444444444444444 1111111111 2222222222222222 444444444444444 111111111 11111 44444444444444444444444444444444444 111
lowQualScore : 1 88 1 0 0000 77 888 5 5 5 5555555555555555555555 1111 999999999 888888 33 33 44444 2 2222 3 2 2 0 00000 0 0 44 0 1 1 1 3 8888888888888888888888888888888 77777 0 777777 3 5555555555555 1111111 6666 2222222222222222222222222222222222222222222222 7777 55 55 55 444444 888 88888888888888888888 444 4 0 2 0 7777777777 0 55 1111111111111111 6 3 666 1 3 111111111111111 55 2 2 2 5555 2 888 2 222222222 3 33 5 00000 88888888888888888888888888888888888 55 33 888 3 55 1 3 111 666 3
lowQualScore : . .. . . .... .. ... . . . ...................... .... ......... ...... .. .. ..... . .... . . . . ..... . . .. . . . . . ............................... ..... . ...... . ............. ....... .... .............................................. .... .. .. .. ...... ... .................... ... . . . . .......... . .. ................ . . ... . . ............... .. . . . .... . ... . ......... . .. . ..... ................................... .. .. ... . .. . . ... ... .
lowQualScore : 0 33 0 2 2222 99 888 0 0 0 6666666666666666666666 4444 888888888 222222 99 22 66666 9 3333 0 9 9 6 88888 8 6 22 8 9 9 1 1 2222222222222222222222222222222 77777 8 999999 1 2222222222222 2222222 1111 3333333333333333333333333333333333333333333333 4444 55 55 00 444444 888 66666666666666666666 222 4 1 0 8 4444444444 7 55 0000000000000000 3 6 444 4 6 555555555555555 66 9 9 9 6666 9 999 9 000000000 5 11 7 00000 11111111111111111111111111111111111 77 55 555 3 77 6 6 444 222 7
consensus : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TATAATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
Reference ( family-42 ) : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TATAATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
gi|1 : ACCATTAGTTT---TA-TAA-AT-AT----CT-------TCTT---CAAATAATTTAA----GGTGCAG-AGTGTAAAATAT--C---C--ACAAT------ATAT--TTTTTGTATTAACCTA--GTGTAAT-G-TCTCTTCTGATA-CATTGCT-CAGTGTTAAATTCTGTATAACTTGGCTCT--TGTATGTAAAATGCCAAATTGCTATCT-GATTTG----------CC------------------CACATA-----TGTA-----AA-TGAGACAATTTTCATGGTTA----G-A----TTTTGAG--------------------A--C----GTTTTGTC-----A---TA--CAATGAT--TC-GCAGAAAC------TAGT---ATG-------------------CCCTATTCTTCTGTAATTCCTCATAGAGGTGA----TCTGATAAATTAATGGT--AA-----AATTGGAC--CATTTT-CCAAAGT---TATTTGA-TA-AATA-----TATTGTAACATGGGTGCT-CATTT-A-TTGTTGATGACT---T-TATT---T----AACTTGTTGGT-A-----AAA------ATGA-----GGCAGA-------G-C---CTAA-CATAATGTA-T-T-TTT-GCCAACTCGTTTAAT-AAAT-ATTTAATAATAAATGAGAACTCAAGTAAGATCCTC--TAAATCTC
gi|10 : aaacaactcatattttttaaaccagtatgacA--TC---TC-TAA-AC-A-AA-ACT-------TATT-ATCACATAACATAC----GGTGCAGGAGTGTAAAACAC--T---C--ATGACCATTTTATAT--TTATT-TATTAACCTA--GTATAAT-AAT---TACCAAAT-ATTCGC--CGGCGCT----TCGGTAAAGCCCGTATAT--TGTACGTTAAATTCCTATCAACTTTTC-GACTTT----------CCGGAACATCTTACTACCATCGAATAGTCATTGTA-----AAATAG---------C---GTTATTTTG-AAACGTT-------------------------A--C----GT-----C-----A---AA--CGATGAC--CA-CCGGAATC------TTAT---ATG-------------------CCTGACCTTT-TC----TTCTTATAGAGGTGA------------------GGT--A---------------------T-CCCGAGT---TATGTGA-TA-AA-----------CTTACA--CGTGCT-CATTT-A-TAATTG-----T---TATATT---ATGCCAACTCGTT--T-A-----ATA--GA-TTTAATGattacacttgtatataaatttctccatatggattatgc
gi|11 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaTT-ACGACATAATT-AT----GGCGCAGGAGTGTAATATACTGC---T--GTGAC------AGGT--TTT---TATTAACCAA--ATGTAACAA-AC-CTGCTGATT-CATTGCT-T-GTGCTG---TCCATATAACTCTCTTCT--C--ACTT-AAATTCCATGTTATTTTAC-ATCTTG----------AT------------------GGAACA-----TAAG-----AA-TGT---------T---GTC-----A-A----TT-------------------------AATC----GT-----CTTTGTA---AA--TGATGAT--TA-TTTGAAag
gi|12 : gtatcgaacatcatcacatgtgttgtacGAGAGCAAGAAAC--T---C--ATGGC------CTAT--T----ATACTTGTTTA--ATA-AAT-A-TA-CTATTTAGT-CATTGCT-TGGCTTTT---ATCGTATAACTCTGCACT--CGTACCTAAA-TACTGAGCAACTTTCC-AACCTA----------CC------------------AAAACA-----TATA-----AA-TGA---------C---ATT-----G-A----TT----------------------------T----GT-----C-----A---ttggtgttgagcaatgactgatggaaacaaatgtatactagttcatactgttgtttgttaaagcatattggaagaccaatttttttcttgcgtttcaaacagatacaa
gi|13 : atatactgatgacatatggcatagtcctAAATTGT--A---------TGTTCGTCA-TTT-CCTGAGT---TAT-------------------ATCTTATAT-CGTGCT-CATTT-A-TTATTGA--A-T---T-TATT---A----AATTCGTTGGC-A-----AA---------AATGATCGGAAGA-------G-C-GTCCCA-CA----ATA-ATT-TTT-ATGAACTCGTTTAATAAA---ATTCAGTGCTAAATGAGCACTTATATAAGATCCTG--TATATATTTtggtaaaatggcgttatttggtggaattacataaaacaatgactggtga
gi|14 : agctgaaCT-CATTT-A-TTATTTA--A-T---T-TATC---G----AATTTGTTGGCAA-----AAA-TGA-TAT-----TAAGTAGA-----------GCCTCG-CAAAAAATA-T-T-TTTCCCCAATGTTTTTAAT-GA---ATTTAATAATAAGTGAGCACTTGTGCAAGCTCCTG--TAGAT-TCTGtctgctcattatgac
gi|15 : aattggtcaactttctaaattagttttgtaatttccatcccattC------ATAT--TATTTATATGAACCTT--GTGTAAT-A-T-------G-----ATCGCT-CGGCGTTT---TCCGTCTAACTCTGCTCT--CGTTCGTTAAGTGTTAAACTTCTTTCC-GACTTG----------CC------------------TTAGTA-----CAAA-----AA-TGA---------C---GTC-----G-A----TT-------------------------G--CCAGGGT-----A-----A---AA--TGACG-C--TA-tgtctcaca
gi|16 : ctGTGTT-TATTT-A-TTATCTC--A-T---T-TATT----------CTTGT---C-A-----AAA-TGA-TACAATGCTCGGC--A-------G-T-GCATCA-CATAATATA-T-T-TTT-AACAACTCGtttcctgacgtaacatc
gi|17 : tttcctgagttat---C--ATGAC------ATAT--TCTTGATATT----------GTA------C-CTATGGAAT-CATCACT-TGTTGTGG---TCCATATAACT
gi|2 : taaaaTAATTA--TGCTTTAATATTT-CC-TTA--TTGCTTA-TGA-AT-GTAG-ATCCAGTATATATA-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--CGAACTAATGAC------ATAT--TTTTTGTATTAACATA--GTGTAAT-A-TCTCTTTCGATT-CATCGCT-CGGTGTTG---TCCGTATAACTCGGCTCT--CGTACGTAATTTGTCGAGGTACTTTCC-GACTTG----------CT------------------TGGATA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---CA--TGATGAT--TA-CCGGAAAC------AAAT---ATG-------------------CCAGATTTGT-TCTCGTTCTTTAAAGAGGTTA----TCTGTTTAATATATGGTAAAA-----A--TGAAA--AAAAAT-CCTGAAT---TATGTGA-TA-AA-AC----GAATTTTACAGTCGTGCT-CATTT-A-TTGTTGA--A-T---T-TATC---A----AATTCGTTGGG-A-----AAA-TGA-TATAATACTCGGTAGA-------GCC-GCCTCG-CATAACATAGA-T-TTT--CCAACTTGTTCAAT-AA---CTTCAATAATAAATAAACACTCATGTAAAATCCTC--TATATATCTGACGAGAGttctaacttgtgatgtcaaata
gi|3 : actaagttaaagaT---TA-TTA-AT-ATAG-ATT-------TAT----CACATAATTTGC----AGTGCAAGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTCTTATATAAACAAA--GTGTAAT-A-TCACTTCCAATT-CATCGCT-CAGCAATT---CCCATACAA-------CT--TGCACATAAAATGCCAAACTACTTTCT-GACTTG----------TC------------------CAAACA-----TATAAAATTAA-TGC---------A---GTT-----G-A----TT----------------------------C----GT-----C-----ATGGTA--AAATGACATTATTTGGAGACTTTGTGTAATGCAATGACTGGTGAAAACGTATTTGCCCATTTTTT-TCTAAATTTTTATAGCGGTGATCATTCTG-AAAAGAAATAGT--AA-----A--TGTTC--CATTTT-CTTGAG----TACGTGATTA-AA-A------------------GTGCT-CATTT-A-TAATTCA--G-T---T-T------------ACTCATCGGCAA-----AAA-TGA-TAT-ATTTTTGG----------------------------ACA-A-T-T----------CGTTAAAT-AT---AGTCAGTAATAAATGAGCACTCACATAAGATTCTT--TATATATCaacgcgagtatctagtctaacgttg
gi|4 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggACTATT-TAA--TG---TA-CAA-AT-A-AA-ATG--------A---ATAACATAAGTTATTGTTGGTGCAG-AGTGTAATAAAC--T---C--ATAA-------------TTTTGATATTAACCTG--GTGTAAT-A----CTGTC-ATG-TATCTCTACCGCGTCA----ACGTGCAG--CGGA-CT--TGTCCG-AACTTATC-AATAACCT--C-GATTTGTGGTGTTCTTCC------------------CGGACG-----T-T-----------A---------C---GTC------------------------------------------------------------A---TA--CTATGAC--TG-ACGGAAAC------TAAT---ACG--------------------CGCGTTTTT-TCTCA-TCCTGATAGAGCTGA----TGTGTAAAATAAATAGT--AATGTAGA--TCTAC--CATTTA-CCTGAGA---TGTGTGA-TACAA-A-----GAATCTTGCATTCGTGCC-CATTT-ATTTTTTTA--A-TCC-T-TA-----A----AACTCGTTGGC-A-----AAATTGA-TATGATGCTCGGCCGA-----------GCCTCG-CATAATA-A-A-T-GTT-GCCAACTCAATTAAT-AA---ATTCAATAATAAATAAGCATTCTTGTAAGATTCTC--CATTTATattctgttatgaaattacatg
gi|5 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtTAATCACATAATTTGGCAACTA----TA--TT----------AT-GTCA-ATT-------TAT------CATGAGTGACT---GGTACATGAGTGTAATAAAC--T---C--ATGCC------ATATTATTTTTATAT-----TA--GAGTTAT-A-TCATTACCGATC-AACCGTA-CAAC-------------TGACTCTGCTTT--CGTAGGTAAAATGAGGAACT-TTTTCC-GGCTTG----------TC------------------GGCGCA-----TCTA-----AA-TGA---------C---GTC-----GCA----TT-------------------------tattatcaaaccagtcatgtt
gi|5 : gaATCCTT-GCTCGTTTTATATAGAAATTA----CTT-TAAAATAAATGTC--AT-----A--TGTAC--CAATGT-TCTTAGT---T-----A-TA-AA-AT----GAACCATACAATCGTGCT-ATTTT-A-TTATATA--T-T---T-TTTTTTAA----AACTTGTTTGC-AC----AAA-AGAGTATTATGCACAAC-GATAATTTTG-CAACCCCGCCATCATACG-A-T-TTT-GTCAATTCATTTAAT-AA---TTTTAAACATAAATGAGC-CTCgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcttagttataaaatgaaccatacaatcgtgctattttattatatatttttttttaaaacttgtttgcacaaaagagtattatgcacaacgataattttgcaaccccgccatcatacgattttgtcaattcatttaataattttaaacataaatgagcctc
gi|6 : gataatcacataatttggcaactatattatgtcaatttatcatgagtgactggtacatgagtgtaataaactcatgccatattatttttatattagagttatatcattaccgatcaaccgtacaactgactctgctttcgtaggtaaaatgaggaactttttccggcttgtcggcgcatctaaatgacgtcgcattgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatTT-ACTACGTAATTTAT----TGTGCAGGAATGTAATAAAC--C---T--ATGAC------ATGT--CTTTGTTATTAAATTATAGTGTAAT-A-TC-A---CGATTTCTTCCCT-CG-TGTAA---ACCGTATAACTTGACTCT--TGTACATACAATGCAAAACGACTTTCT-GTCTTA----------CC------------------CGAAAA-----TATA-----TA-AGA---------C---ATA-----A-A----TT-------------------------A--
gi|6 : attaattTTT-TCTTGTTCCTTAGAAAGATGA----AATGAAAAATTAATGG----A-----A---------CAATTT----AAGTAAATAAGTG--TA-CA-ATGTTTGTGTGTTACATTCA-----CATTTCA-TTACT----A-T---T-TAAT---A-------------GC-A-----AA------TATTATG-----------------------TC------ATTTA-A-T-TTT-GCTATCTCATTTAAT-AATCAATTCAATAATAAACGAGAACTCATGTAatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagcaaatattatgtcatttaattttgctatctcatttaataatcaattcaataataaacgagaactcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|6 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttg-CCAGGGT---AATGCTA-TA-AT-A-----GA----TACATGAGTTCT-CGTTT-A-TTATTGA--A-TTGAT-TATT---A----AATGAGATAGC-AAAATTAAA-TGA-CATAATATTTGtctattatagcattaccctggtttggagactttccatgttcat
gi|7 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagTAATGA--TGGTTTAACAAGTACC-TTA--TA---TAATAA-ATTATAGGATT-------TAT---------AACTTCC----TATGGAAGAGTGTAATAAAC--G---C--AAGAC------GT-T--TTCTTATATTAACTCA--GTGTAAT-A-TCACTACCGATT-CATCGTT-CGGAGTTT---TCCGTATAACTCGTCTTT--CGTACGTAAATTACCGAACTATTTTAC-GATTT-------------------------------------------ATG-----AC-TAA---------T---GTC-----G-A----TTCGTCAAAGTTATTTTGAGACATTACA--C----GT-----C-----A---TA--CGATGAC--TG-ACCGAAAT------TAAT-----G-------------------ACAC-----T-CCACGTAACT---AGAGGTTA----TTTTAGAAATAAATTGT--AA-----T--TGTAT--TTTTTTTCCTGATG---TATGTGA-TA-AAGA-----AAATCTTACATCCGTTCT-CATTT-A-TTATTTA--A-T---T-TATT---A----A-CTCGTCGGC-A-----AAACTGG-TATGATGTGTGACAGA-------G-C---CTTG-CATAATATA-T-T-GTT-ACCAACTC-TTTGGT-AA---ATTCAATAATAAACGAGCACTCTTGTAAGATCCTCAATATATAGCTAGCTAGAGtttggagactttccatgttcat
gi|8 : --TT---TA-TAACGT-AT----TTG------TATTTATCACATAATTTAC----GGTGCATGAGTGTAATAACC--C---A--ATGAC------ATA---TTTTGATATTAACCTA--GTGTAAT-G-TCACTTCCGAAC-CCTCACT-CGGTGATT---TCCGTATAACTCAGCTCT--CGTACGCAATATGCTGAAGTGCTTTCC-AACTTG----------CC------------------CGGACT-----CATG-----AA-TG--------------GTC-----G-A----TT-------------------------gcg
gi|8 : tgatatcacgtatcgaacg-A----TT-------------------------A--C----AT-----C-----A---TA--CGATGAC--TA-ACGGATAC------TAAA---ATG-------------------AACAATTCTT-CCTCATTCTTTATAGAGGTGA----CATGAAAAATAAATTGT--AA-----A--TGCAC--CAATTT-CCTGAGT---CATCTGA-CA-----------------ACATTTGCATTACATTT-A-TTATTTA--A-----T-TAT---------------------A-----AAA------------CTCGACAGA-------G-C-A--TCG-CATGATAT--A-T-TTT-GTCAACTCGTTTAAT-AA---ATTCAATAA-AAATTAGCGCTCATGTAAGATCCCA--TATATATCtgttatgataatacacacattaaatttgttttagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaactcgacagagcatcgcatgatatattttgtcaactcgtttaataaattcaataaaaattagcgctcatgtaagatcccatatatatc
gi|9 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacATAGTTTAC----AGTGCAAAAGT--AATAAAC--C------ATGAC------ATAT--TTTTGATATTAAC-------------------TACCGATT-CATTACT-CCGTGTTG---TCTGTATAACTTGGCACTTATATATGTTAAATATGGAGCTTTTTTTCGGACTTG----------CT------------------CGAATA-----TCTT-----AA-TCA---------T---GTT-----A-A----TT----------------------------T----AT-----T-----A---AATGCAATGAC--TG-ATAGAAAC------CAAT---
gi|9 : tCATTCATGCT-CATTT-A-GCAATAA--A-T---T-TATT---A----AACT---TAGC-A-----AAAATTA-TATAATGC-------A--------------TCT-AAGAATGTA-T-TCTTT-GCCAAATGATTTAAT-AA---ATTCAATAACAAACAAGGACAAATGTAAGATTCTC--CATACA---GGCAAAActattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattcatgctcatttagcaataaatttattaaacttagcaaaaattatataatgcatctaagaatgtattctttgccaaatgatttaataaattcaataacaaacaaggacaaatgtaagattctccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTTTATTCAATTTGTTAATAAAAATGCCAAAACCTGTGACATCTGCATTTATGCAACTTGTTTAATTAAT
Alignments
lowQualScore : 11 1111 3333333333333333333333 1111 2222 11111 2222222222222222222222222222222 1111111111111 1111111 5555555555555555555555555555555555555555555555 111111 44444444444444444444 1111111111 2222222222222222 444444444444444 111111111 11111 44444444444444444444444444444444444 111
lowQualScore : 1 88 1 0 0000 77 888 5 5 5 5555555555555555555555 1111 999999999 888888 33 33 44444 2 2222 3 2 2 0 00000 0 0 44 0 1 1 1 3 8888888888888888888888888888888 77777 0 777777 3 5555555555555 1111111 6666 2222222222222222222222222222222222222222222222 7777 55 55 55 444444 888 88888888888888888888 444 4 0 2 0 7777777777 0 55 1111111111111111 6 3 666 1 3 111111111111111 55 2 2 2 5555 2 888 2 222222222 3 33 5 00000 88888888888888888888888888888888888 55 33 888 3 55 1 3 111 666 3
lowQualScore : . .. . . .... .. ... . . . ...................... .... ......... ...... .. .. ..... . .... . . . . ..... . . .. . . . . . ............................... ..... . ...... . ............. ....... .... .............................................. .... .. .. .. ...... ... .................... ... . . . . .......... . .. ................ . . ... . . ............... .. . . . .... . ... . ......... . .. . ..... ................................... .. .. ... . .. . . ... ... .
lowQualScore : 0 33 0 2 2222 99 888 0 0 0 6666666666666666666666 4444 888888888 222222 99 22 66666 9 3333 0 9 9 6 88888 8 6 22 8 9 9 1 1 2222222222222222222222222222222 77777 8 999999 1 2222222222222 2222222 1111 3333333333333333333333333333333333333333333333 4444 55 55 00 444444 888 66666666666666666666 222 4 1 0 8 4444444444 7 55 0000000000000000 3 6 444 4 6 555555555555555 66 9 9 9 6666 9 999 9 000000000 5 11 7 00000 11111111111111111111111111111111111 77 55 555 3 77 6 6 444 222 7
consensus : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TATAATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
Reference ( family-42 ) : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TATAATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
gi|1 : ACCATTAGTTT---TA-TAA-AT-AT----CT-------TCTT---CAAATAATTTAA----GGTGCAG-AGTGTAAAATAT--C---C--ACAAT------ATAT--TTTTTGTATTAACCTA--GTGTAAT-G-TCTCTTCTGATA-CATTGCT-CAGTGTTAAATTCTGTATAACTTGGCTCT--TGTATGTAAAATGCCAAATTGCTATCT-GATTTG----------CC------------------CACATA-----TGTA-----AA-TGAGACAATTTTCATGGTTA----G-A----TTTTGAG--------------------A--C----GTTTTGTC-----A---TA--CAATGAT--TC-GCAGAAAC------TAGT---ATG-------------------CCCTATTCTTCTGTAATTCCTCATAGAGGTGA----TCTGATAAATTAATGGT--AA-----AATTGGAC--CATTTT-CCAAAGT---TATTTGA-TA-AATA-----TATTGTAACATGGGTGCT-CATTT-A-TTGTTGATGACT---T-TATT---T----AACTTGTTGGT-A-----AAA------ATGA-----GGCAGA-------G-C---CTAA-CATAATGTA-T-T-TTT-GCCAACTCGTTTAAT-AAAT-ATTTAATAATAAATGAGAACTCAAGTAAGATCCTC--TAAATCTC
gi|10 : aaacaactcatattttttaaaccagtatgacA--TC---TC-TAA-AC-A-AA-ACT-------TATT-ATCACATAACATAC----GGTGCAGGAGTGTAAAACAC--T---C--ATGACCATTTTATAT--TTATT-TATTAACCTA--GTATAAT-AAT---TACCAAAT-ATTCGC--CGGCGCT----TCGGTAAAGCCCGTATAT--TGTACGTTAAATTCCTATCAACTTTTC-GACTTT----------CCGGAACATCTTACTACCATCGAATAGTCATTGTA-----AAATAG---------C---GTTATTTTG-AAACGTT-------------------------A--C----GT-----C-----A---AA--CGATGAC--CA-CCGGAATC------TTAT---ATG-------------------CCTGACCTTT-TC----TTCTTATAGAGGTGA------------------GGT--A---------------------T-CCCGAGT---TATGTGA-TA-AA-----------CTTACA--CGTGCT-CATTT-A-TAATTG-----T---TATATT---ATGCCAACTCGTT--T-A-----ATA--GA-TTTAATGattacacttgtatataaatttctccatatggattatgc
gi|11 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaTT-ACGACATAATT-AT----GGCGCAGGAGTGTAATATACTGC---T--GTGAC------AGGT--TTT---TATTAACCAA--ATGTAACAA-AC-CTGCTGATT-CATTGCT-T-GTGCTG---TCCATATAACTCTCTTCT--C--ACTT-AAATTCCATGTTATTTTAC-ATCTTG----------AT------------------GGAACA-----TAAG-----AA-TGT---------T---GTC-----A-A----TT-------------------------AATC----GT-----CTTTGTA---AA--TGATGAT--TA-TTTGAAag
gi|12 : gtatcgaacatcatcacatgtgttgtacGAGAGCAAGAAAC--T---C--ATGGC------CTAT--T----ATACTTGTTTA--ATA-AAT-A-TA-CTATTTAGT-CATTGCT-TGGCTTTT---ATCGTATAACTCTGCACT--CGTACCTAAA-TACTGAGCAACTTTCC-AACCTA----------CC------------------AAAACA-----TATA-----AA-TGA---------C---ATT-----G-A----TT----------------------------T----GT-----C-----A---ttggtgttgagcaatgactgatggaaacaaatgtatactagttcatactgttgtttgttaaagcatattggaagaccaatttttttcttgcgtttcaaacagatacaa
gi|13 : atatactgatgacatatggcatagtcctAAATTGT--A---------TGTTCGTCA-TTT-CCTGAGT---TAT-------------------ATCTTATAT-CGTGCT-CATTT-A-TTATTGA--A-T---T-TATT---A----AATTCGTTGGC-A-----AA---------AATGATCGGAAGA-------G-C-GTCCCA-CA----ATA-ATT-TTT-ATGAACTCGTTTAATAAA---ATTCAGTGCTAAATGAGCACTTATATAAGATCCTG--TATATATTTtggtaaaatggcgttatttggtggaattacataaaacaatgactggtga
gi|14 : agctgaaCT-CATTT-A-TTATTTA--A-T---T-TATC---G----AATTTGTTGGCAA-----AAA-TGA-TAT-----TAAGTAGA-----------GCCTCG-CAAAAAATA-T-T-TTTCCCCAATGTTTTTAAT-GA---ATTTAATAATAAGTGAGCACTTGTGCAAGCTCCTG--TAGAT-TCTGtctgctcattatgac
gi|15 : aattggtcaactttctaaattagttttgtaatttccatcccattC------ATAT--TATTTATATGAACCTT--GTGTAAT-A-T-------G-----ATCGCT-CGGCGTTT---TCCGTCTAACTCTGCTCT--CGTTCGTTAAGTGTTAAACTTCTTTCC-GACTTG----------CC------------------TTAGTA-----CAAA-----AA-TGA---------C---GTC-----G-A----TT-------------------------G--CCAGGGT-----A-----A---AA--TGACG-C--TA-tgtctcaca
gi|16 : ctGTGTT-TATTT-A-TTATCTC--A-T---T-TATT----------CTTGT---C-A-----AAA-TGA-TACAATGCTCGGC--A-------G-T-GCATCA-CATAATATA-T-T-TTT-AACAACTCGtttcctgacgtaacatc
gi|17 : tttcctgagttat---C--ATGAC------ATAT--TCTTGATATT----------GTA------C-CTATGGAAT-CATCACT-TGTTGTGG---TCCATATAACT
gi|2 : taaaaTAATTA--TGCTTTAATATTT-CC-TTA--TTGCTTA-TGA-AT-GTAG-ATCCAGTATATATA-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--CGAACTAATGAC------ATAT--TTTTTGTATTAACATA--GTGTAAT-A-TCTCTTTCGATT-CATCGCT-CGGTGTTG---TCCGTATAACTCGGCTCT--CGTACGTAATTTGTCGAGGTACTTTCC-GACTTG----------CT------------------TGGATA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---CA--TGATGAT--TA-CCGGAAAC------AAAT---ATG-------------------CCAGATTTGT-TCTCGTTCTTTAAAGAGGTTA----TCTGTTTAATATATGGTAAAA-----A--TGAAA--AAAAAT-CCTGAAT---TATGTGA-TA-AA-AC----GAATTTTACAGTCGTGCT-CATTT-A-TTGTTGA--A-T---T-TATC---A----AATTCGTTGGG-A-----AAA-TGA-TATAATACTCGGTAGA-------GCC-GCCTCG-CATAACATAGA-T-TTT--CCAACTTGTTCAAT-AA---CTTCAATAATAAATAAACACTCATGTAAAATCCTC--TATATATCTGACGAGAGttctaacttgtgatgtcaaata
gi|3 : actaagttaaagaT---TA-TTA-AT-ATAG-ATT-------TAT----CACATAATTTGC----AGTGCAAGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTCTTATATAAACAAA--GTGTAAT-A-TCACTTCCAATT-CATCGCT-CAGCAATT---CCCATACAA-------CT--TGCACATAAAATGCCAAACTACTTTCT-GACTTG----------TC------------------CAAACA-----TATAAAATTAA-TGC---------A---GTT-----G-A----TT----------------------------C----GT-----C-----ATGGTA--AAATGACATTATTTGGAGACTTTGTGTAATGCAATGACTGGTGAAAACGTATTTGCCCATTTTTT-TCTAAATTTTTATAGCGGTGATCATTCTG-AAAAGAAATAGT--AA-----A--TGTTC--CATTTT-CTTGAG----TACGTGATTA-AA-A------------------GTGCT-CATTT-A-TAATTCA--G-T---T-T------------ACTCATCGGCAA-----AAA-TGA-TAT-ATTTTTGG----------------------------ACA-A-T-T----------CGTTAAAT-AT---AGTCAGTAATAAATGAGCACTCACATAAGATTCTT--TATATATCaacgcgagtatctagtctaacgttg
gi|4 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggACTATT-TAA--TG---TA-CAA-AT-A-AA-ATG--------A---ATAACATAAGTTATTGTTGGTGCAG-AGTGTAATAAAC--T---C--ATAA-------------TTTTGATATTAACCTG--GTGTAAT-A----CTGTC-ATG-TATCTCTACCGCGTCA----ACGTGCAG--CGGA-CT--TGTCCG-AACTTATC-AATAACCT--C-GATTTGTGGTGTTCTTCC------------------CGGACG-----T-T-----------A---------C---GTC------------------------------------------------------------A---TA--CTATGAC--TG-ACGGAAAC------TAAT---ACG--------------------CGCGTTTTT-TCTCA-TCCTGATAGAGCTGA----TGTGTAAAATAAATAGT--AATGTAGA--TCTAC--CATTTA-CCTGAGA---TGTGTGA-TACAA-A-----GAATCTTGCATTCGTGCC-CATTT-ATTTTTTTA--A-TCC-T-TA-----A----AACTCGTTGGC-A-----AAATTGA-TATGATGCTCGGCCGA-----------GCCTCG-CATAATA-A-A-T-GTT-GCCAACTCAATTAAT-AA---ATTCAATAATAAATAAGCATTCTTGTAAGATTCTC--CATTTATattctgttatgaaattacatg
gi|5 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtTAATCACATAATTTGGCAACTA----TA--TT----------AT-GTCA-ATT-------TAT------CATGAGTGACT---GGTACATGAGTGTAATAAAC--T---C--ATGCC------ATATTATTTTTATAT-----TA--GAGTTAT-A-TCATTACCGATC-AACCGTA-CAAC-------------TGACTCTGCTTT--CGTAGGTAAAATGAGGAACT-TTTTCC-GGCTTG----------TC------------------GGCGCA-----TCTA-----AA-TGA---------C---GTC-----GCA----TT-------------------------tattatcaaaccagtcatgtt
gi|5 : gaATCCTT-GCTCGTTTTATATAGAAATTA----CTT-TAAAATAAATGTC--AT-----A--TGTAC--CAATGT-TCTTAGT---T-----A-TA-AA-AT----GAACCATACAATCGTGCT-ATTTT-A-TTATATA--T-T---T-TTTTTTAA----AACTTGTTTGC-AC----AAA-AGAGTATTATGCACAAC-GATAATTTTG-CAACCCCGCCATCATACG-A-T-TTT-GTCAATTCATTTAAT-AA---TTTTAAACATAAATGAGC-CTCgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcttagttataaaatgaaccatacaatcgtgctattttattatatatttttttttaaaacttgtttgcacaaaagagtattatgcacaacgataattttgcaaccccgccatcatacgattttgtcaattcatttaataattttaaacataaatgagcctc
gi|6 : gataatcacataatttggcaactatattatgtcaatttatcatgagtgactggtacatgagtgtaataaactcatgccatattatttttatattagagttatatcattaccgatcaaccgtacaactgactctgctttcgtaggtaaaatgaggaactttttccggcttgtcggcgcatctaaatgacgtcgcattgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatTT-ACTACGTAATTTAT----TGTGCAGGAATGTAATAAAC--C---T--ATGAC------ATGT--CTTTGTTATTAAATTATAGTGTAAT-A-TC-A---CGATTTCTTCCCT-CG-TGTAA---ACCGTATAACTTGACTCT--TGTACATACAATGCAAAACGACTTTCT-GTCTTA----------CC------------------CGAAAA-----TATA-----TA-AGA---------C---ATA-----A-A----TT-------------------------A--
gi|6 : attaattTTT-TCTTGTTCCTTAGAAAGATGA----AATGAAAAATTAATGG----A-----A---------CAATTT----AAGTAAATAAGTG--TA-CA-ATGTTTGTGTGTTACATTCA-----CATTTCA-TTACT----A-T---T-TAAT---A-------------GC-A-----AA------TATTATG-----------------------TC------ATTTA-A-T-TTT-GCTATCTCATTTAAT-AATCAATTCAATAATAAACGAGAACTCATGTAatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagcaaatattatgtcatttaattttgctatctcatttaataatcaattcaataataaacgagaactcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|6 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttg-CCAGGGT---AATGCTA-TA-AT-A-----GA----TACATGAGTTCT-CGTTT-A-TTATTGA--A-TTGAT-TATT---A----AATGAGATAGC-AAAATTAAA-TGA-CATAATATTTGtctattatagcattaccctggtttggagactttccatgttcat
gi|7 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagTAATGA--TGGTTTAACAAGTACC-TTA--TA---TAATAA-ATTATAGGATT-------TAT---------AACTTCC----TATGGAAGAGTGTAATAAAC--G---C--AAGAC------GT-T--TTCTTATATTAACTCA--GTGTAAT-A-TCACTACCGATT-CATCGTT-CGGAGTTT---TCCGTATAACTCGTCTTT--CGTACGTAAATTACCGAACTATTTTAC-GATTT-------------------------------------------ATG-----AC-TAA---------T---GTC-----G-A----TTCGTCAAAGTTATTTTGAGACATTACA--C----GT-----C-----A---TA--CGATGAC--TG-ACCGAAAT------TAAT-----G-------------------ACAC-----T-CCACGTAACT---AGAGGTTA----TTTTAGAAATAAATTGT--AA-----T--TGTAT--TTTTTTTCCTGATG---TATGTGA-TA-AAGA-----AAATCTTACATCCGTTCT-CATTT-A-TTATTTA--A-T---T-TATT---A----A-CTCGTCGGC-A-----AAACTGG-TATGATGTGTGACAGA-------G-C---CTTG-CATAATATA-T-T-GTT-ACCAACTC-TTTGGT-AA---ATTCAATAATAAACGAGCACTCTTGTAAGATCCTCAATATATAGCTAGCTAGAGtttggagactttccatgttcat
gi|8 : --TT---TA-TAACGT-AT----TTG------TATTTATCACATAATTTAC----GGTGCATGAGTGTAATAACC--C---A--ATGAC------ATA---TTTTGATATTAACCTA--GTGTAAT-G-TCACTTCCGAAC-CCTCACT-CGGTGATT---TCCGTATAACTCAGCTCT--CGTACGCAATATGCTGAAGTGCTTTCC-AACTTG----------CC------------------CGGACT-----CATG-----AA-TG--------------GTC-----G-A----TT-------------------------gcg
gi|8 : tgatatcacgtatcgaacg-A----TT-------------------------A--C----AT-----C-----A---TA--CGATGAC--TA-ACGGATAC------TAAA---ATG-------------------AACAATTCTT-CCTCATTCTTTATAGAGGTGA----CATGAAAAATAAATTGT--AA-----A--TGCAC--CAATTT-CCTGAGT---CATCTGA-CA-----------------ACATTTGCATTACATTT-A-TTATTTA--A-----T-TAT---------------------A-----AAA------------CTCGACAGA-------G-C-A--TCG-CATGATAT--A-T-TTT-GTCAACTCGTTTAAT-AA---ATTCAATAA-AAATTAGCGCTCATGTAAGATCCCA--TATATATCtgttatgataatacacacattaaatttgttttagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaactcgacagagcatcgcatgatatattttgtcaactcgtttaataaattcaataaaaattagcgctcatgtaagatcccatatatatc
gi|9 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacATAGTTTAC----AGTGCAAAAGT--AATAAAC--C------ATGAC------ATAT--TTTTGATATTAAC-------------------TACCGATT-CATTACT-CCGTGTTG---TCTGTATAACTTGGCACTTATATATGTTAAATATGGAGCTTTTTTTCGGACTTG----------CT------------------CGAATA-----TCTT-----AA-TCA---------T---GTT-----A-A----TT----------------------------T----AT-----T-----A---AATGCAATGAC--TG-ATAGAAAC------CAAT---
gi|9 : tCATTCATGCT-CATTT-A-GCAATAA--A-T---T-TATT---A----AACT---TAGC-A-----AAAATTA-TATAATGC-------A--------------TCT-AAGAATGTA-T-TCTTT-GCCAAATGATTTAAT-AA---ATTCAATAACAAACAAGGACAAATGTAAGATTCTC--CATACA---GGCAAAActattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattcatgctcatttagcaataaatttattaaacttagcaaaaattatataatgcatctaagaatgtattctttgccaaatgatttaataaattcaataacaaacaaggacaaatgtaagattctccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
blockSeqs : C CA A ATT . GCT A C T TAGATCCAGTATATATAATC TGTT CGAACTA CATTTT TA TA TTATA A TCT A T A GT TA A T A G CCGGAACATCTTACTACCATC GTCAT AAAATT A C ATTTTG AACG CGTCAAAGTTATTTTGAGACATTACACGTC TGGT TG AT TT TTTGTG GCA ACTGGTGAAAACGTATTTGC TGA . T TCATTCTGA AA ATGTAGATCTAC A T AAA G T CAATGTTTGTGTG GT A C T GA . TGA A TATGCC C TG A AAATT AGAGTATTATGCACAACGATAATTTTGCAACC GC AA AT C CC G A TCA CAA T
blockSeqs : G . G ACC . . . . . AAACTTATTATC T TGCT . . GA CTA . TCA G . . TA . A A A . TGGTGTTCTTCCC . A . T GC . AATCGTCTTTGT A . . C . . C AGA . A TCTGTT . TGTTCGT T . . G . AAACGAATT TT . . . TA . CC . TTTAA C TG A C TGATATAATACTCGGTAGAGCCGCC A TA GA . A T . . G A
blockSeqs : CC . . . . . TTTGTATTTATC . TC . . TG CAA . TCA A . . TT . G G A . ATG . G . C A . GCCAGGGTA A . . T . . C CAT . T TGTGTA . AATGAAA T . . G . CAAAGAATC AT . . . TC . . . TA T TG . . TTGATATGATGCTCGGCCGAGCC G TA T . A G . . G
blockSeqs : A . . . . . TAGATTTATC . TC . . TA TTA . TCA A . . GT . T A T . CCA . A . C G . ACGTC A . . C . . A GCG . T AATGAA . AATGTTC A . . G . AAATGAACC TT . . . GA . . . CG T CG . . CTGGTATGATGTGTGACAGAGCC A TA T . G G . . C
blockSeqs : . . . . . TAGGATTTAT . CC . . GA CTT . TCA T . . GT . A G A . CCT . A . C G . ACGTC C . . A . . A CAA . T TTTTAG . TATGTAC A . . G . AAGAAAATC TG . . . CA . . . CA C TG . . TGATACAATGCTCGGCAGTGCA G TC A . G G . . T
blockSeqs : . . . . . AAATGAATA . TC . . TA ATA . AT T . . TC . T A A . CTT . A . A G . ACATC T . . A . . . AC . T CATGAA . ATTGTAT T . . G . ATAGA TC . . . TA . . . TA C TT . . AATGATCGGAAGAGCGTC G TA A . G A . . C
blockSeqs : . . . . TCAATTTAT . TC . . GT AAA . AC G . . AA . A G A . TCC . A . C G . TGTC T . . A . . . . CTTTA . AATGCAC A . . G . AAC TT . . . TA . . . TA C TA . . TGATATTAAGTAGAGCC G TG A . A A . . A
blockSeqs : . CT . . TA CTG . TA A . . TT . A A A . TCG . A . C A . CGTC T . . A . . . . AA . . . C . ATC TT . . . GA . . . TA T CG . . TGATATATTTTTGG G GA A . G A . . C
blockSeqs : . GC . . GA TCA . TC A . . TT . T G A . CCC . G . C G . TATT A . . . . . . . . . AAA T . . . TA . . . TA A TA . . ATTATATAATGCA T . T . G G . .
blockSeqs : . CA . . GA CTA . T T . . GT . A G G . CCC . G . T G . . . . . . . . . . . TA . . . T C T . . CTCGACAGAGCA . . A . . A . .
blockSeqs : C . . T TA . C A . . T . A G T . CTC . T . T A . . . . . AA . . . A . . . . TATTATG . . T . . .
blockSeqs : . . A . . . . . . A . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ACC* ** TAAATTTATC************ NT*** C************ G****** ACGTC***************************************** AATGTAC********* TA** TGATATNATGCTCGGCAGAGCC************* ***
originalCons : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAG-ATT-------TATT-ATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGA---------C---GTC-----G-A----TT-------------------------A--C----GT-----C-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTNA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAA-TGA-TATAATGCTCGGCAGA-------G-C-GCCTCG-CATAATATA-A-T-TTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
finalCons : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--TT---TA-TAA-AT-ATAAATTTATC------------ACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTNT---CCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-TGAC------------GTCG------A----TTACGTC-----------------------------------------A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATTTTT-TCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AAATGTAC---------CANTTT-CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATTTA--A-T---T-TATT---A----AACTCGTTGGC-A-----AAATGATATNATGCTCGGCAGAGCC-------------TCG-CATAATATA-A-T-TTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTTTATTCAATTTGTTAATAAAAATGCCAAAACCTGTGACATCTGCATTTATGCAACTTGTTTAATTAAT
Alignments
lowQualScore : 11 1111111111 1111 2222 11111 2222222222222222222222222222222 66666666666666666666666666666666666666666666666666 111111 44444444444444444444 1111111111 1111111111111111 333333333333333 111111111 11111 444444444444444444444444444444444 111 111
lowQualScore : 1 88 1 7 0 999 77 888 5 888 888888 7777777777 55 1 1111 999999999 888888 33 33 44444 2 2222 3 2 2 0 00000 0 0 44 0 1 1 1 3 8888888888888888888888888888888 77777 0 777777 3 44 6666 11111111111111111111111111111111111111111111111111 99999 7777 55 55 55 444444 888 88888888888888888888 444 4 0 2 0 7777777777 0 55 6666666666666666 5 77 7777 00 3 555555555555555 55 2 2 2 999 2 888 2 555555555 1 2 0 3 00000 555555555555555555555555555555555 2 44 222 6 3 000 888 0 2
lowQualScore : . .. . . . ... .. ... . ... ...... .......... .. . .... ......... ...... .. .. ..... . .... . . . . ..... . . .. . . . . . ............................... ..... . ...... . .. .... .................................................. ..... .... .. .. .. ...... ... .................... ... . . . . .......... . .. ................ . .. .... .. . ............... .. . . . ... . ... . ......... . . . . ..... ................................. . .. ... . . ... ... . .
lowQualScore : 0 33 0 3 2 444 99 888 0 888 777777 5555555555 55 6 4444 888888888 222222 99 22 66666 9 3333 0 9 9 6 88888 8 6 22 8 9 9 1 1 2222222222222222222222222222222 77777 8 999999 1 22 5555 11111111111111111111111111111111111111111111111111 11111 4444 55 55 00 444444 888 66666666666666666666 222 4 1 0 8 4444444444 7 00 9999999999999999 8 99 1111 88 3 111111111111111 66 9 9 9 999 9 999 9 555555555 7 9 1 1 88888 000000000000000000000000000000000 5 33 999 2 3 444 222 1 5
consensus : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--T---TTA-TAA---AT-ATAG-AT----------T--TATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-T--GACG----TC-------G-A----TT-------------------------A--C-----GTC-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATT-TTTTCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT--CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATT--TAA-T---T-TATT---A----AACTCG-TTGGC-A-----AAA-TGA-TATNATGCTCGGCAG---------A---GCCTCG-CATAATATA-N-TTTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCNAGAG
Reference ( family-42 ) : NNNNNNNNNNNNNTAATNA--TGNTTTAACAACTACC-TTA--T---TTA-TAA---AT-ATAA-AT----------T--TATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTTTTATATTAACCTA--GTGTAAT-A-TC-CTNCCGATT-CATCGCT-CGGCGTTN---TCCGTATAACTCGGCTCT--CGTACGTAAAATGCCGAACTACTTTCC-GACTTG----------CC------------------CGAACA-----TATA-----AA-T--GACG----TC-------G-A----TT-------------------------A--C-----GTC-----A---NA--CGATGAC--TA-NCGGAAAC------TAAT---ATG-------------------CCNNATT-TTTTCTCGTTCCTTATAGAGGTGA----TNTGNAAAATAAATGGT--AA-----A--TGTAC--CANTTT--CCTGAGT---TATGTGA-TA-AA-A-----GAATCTTACATTCGTGCT-CATTT-A-TTATT--TAA-T---T-TATT---A----AACTCG-TTGGC-A-----AAA-TGA-TATNATGCTCGGCAG---------A---GCCTCG-CATAATATA-A-TTTT-GCCAACTCGTTTAAT-AA---ATTCAATAATAAATGAGCACTCATGTAAGATCCTC--TATATATCTGGCGAGAG
gi|1 : ACCATTAGTT---TTA-TAA---AT-ATC---T----------T--CTTCAAATAATTTAA----GGTGCAG-AGTGTAAAATAT--C---C--ACAAT------ATAT--TTTTTGTATTAACCTA--GTGTAAT-G-TCTCTTCTGATA-CATTGCT-CAGTGTTAAATTCTGTATAACTTGGCTCT--TGTATGTAAAATGCCAAATTGCTATCT-GATTTG----------CC------------------CACATA-----TGTA-----AA-TGAGACAATTTTCATGGTTAG-A----TTTTGAG--------------------A--CGTTTTGTC-----A---TA--CAATGAT--TC-GCAGAAAC------TAGT---ATG-------------------CCCTATTCTTCTGTAATTCCTCATAGAGGTGA----TCTGATAAATTAATGGT--AA-----AATTGGAC--CATTTT--CCAAAGT---TATTTGA-TA-AATA-----TATTGTAACATGGGTGCT-CATTT-A-TTGTTGATGACT---T-TATT---T----AACTTG-TTGGT-A-----AAA------ATGA-----GGCAG---------A---GCCTAA-CATAATGTA-T-TTTT-GCCAACTCGTTTAAT-AAAT-ATTTAATAATAAATGAGAACTCAAGTAAGATCCTC--TAAATCTC
gi|10 : aaacaactcatattttttaaaccagtatgacA--T---CTC-TAA---AC-AAAA-CT----------TATTATCACATAACATAC----GGTGCAGGAGTGTAAAACAC--T---C--ATGACCATTTTATAT--TTATT-TATTAACCTA--GTATAAT-AAT---TACCAAAT-ATTCGC--CGGCGCT----TCGGTAAAGCCCGTATAT--TGTACGTTAAATTCCTATCAACTTTTC-GACTTT----------CCGGAACATCTTACTACCATCGAATAGTCATTGTA-----AAAT--AGCG----TTATTTT--G-AAACGTT-------------------------A--C-----GTC-----A---AA--CGATGAC--CA-CCGGAATC------TTAT---ATG-------------------CCTGACC-TTTTC----TTCTTATAGAGGTGA------------------GGT--A---------------------T--CCCGAGT---TATGTGA-TA-AA-----------CTTACA--CGTGCT-CATTT-A-TAATT----G-T---TATATT---ATGCCAACTCG-TTattacacttgtatataaatttctccatatggattatgc
gi|10 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaTATA---TTAT-GCCAACTCGTTTAAT-AG---ATTTAATGAtaatagatttaatgag
gi|11 : aaatacatacgtttcaaagatataacaacagcgttaaatgttttgtaatctctaaacaaaacttattatcacataacatacggtgcaggagtgtaaaacactcatgaccattttatatttatttattaacctagtataataattaccaaatattcgccggcgcttcggtaaagcccgtatattgtacgttaaattcctatcaacttttcgactttccggaacatcttactaccatcgaatagtcattgtaaaatagcgttattttgaaacgttacgtcaaacgatgaccaccggaatcttatatgcctgaccttttcttcttatagaggtgaggtatcccgagttatgtgataaacttacacgtgctcatttataattgt-AC----------T--TACGACATAATT-AT----GGCGCAGGAGTGTAATATACTGC---T--GTGAC------AGGT--TTT---TATTAACCAA--ATGTAACAA-AC-CTGCTGATT-CATTGCT-T-GTGCTG---TCCATATAACTCTCTTCT--C--ACTT-AAATTCCATGTTATTTTAC-ATCTTG----------AT------------------GGAACA-----TAAG-----AA-T--GTTG----TC-------A-A----TT-------------------------AATC-----GTCTTTGTA---AA--TGATGAT--TA-TTTGAAg
gi|12 : gtatcgaacatcatcacatgtgttgtGAGAGCAAGAAAC--T---C--ATGGC------CTAT--T----ATACTTGTTTA--ATA-AAT-A-TA-CTATTTAGT-CATTGCT-TGGCTTTT---ATCGTATAACTCTGCACT--CGTACCTAAA-TACTGAGCAACTTTCC-AACCTA----------CC------------------AAAACA-----TATA-----AA-T--GACA----TT-------G-A----TT----------------------------T-----GTC-----A---ttggtgttgagcaatgactgatggaaacaaatgtatactagttcatactgttgtttgttaaagcatattggaagaccaatttttttcttgcgtttcaaacagatacaa
gi|13 : atatactgatgacatatggcatagtcctAAATTGT--A---------TGTTCGTCA-TTT--CCTGAGT---TAT-------------------ATCTTATAT-CGTGCT-CATTT-A-TTATT--GAA-T---T-TATT---A----AATTCG-TTGGC-A-----AAA---------ATGATCGGAAG---------A---GCGTCC-CACAATA-A-T-TTTT-ATGAACTCGTTTAATAAA---ATTCAGTGCTAAATGAGCACTTATATAAGATCCTG--TATATATTTtggtaaaatggcgttatttggtggaattacataaaacaatgactggtga
gi|14 : agctgaaCT-CATTT-A-TTATT--TAA-T---T-TATC---G----AATTTG-TTGGCAA-----AAA-TGA-TATTA-----AGTAG---------A---GCCTCG-CAAAAAATA-T-TTTTCCCCAATGTTTTTAAT-GA---ATTTAATAATAAGTGAGCACTTGTGCAAGCTCCTG--TAGAT-TCTGtctgctcattatgac
gi|15 : aattggtcaactttctaaattagttttgtaatttccatcccattC------ATAT--TATTTATATGAACCTT--GTGTAAT-A-T-------G-----ATCGCT-CGGCGTTT---TCCGTCTAACTCTGCTCT--CGTTCGTTAAGTGTTAAACTTCTTTCC-GACTTG----------CC------------------TTAGTA-----CAAA-----AA-T--GACG----TC-------G-A----TT-------------------------G--CCAGG-GTA-----A---AA--TGACG-C--TA-tgtctcaca
gi|16 : ctGTGTT-TATTT-A-TTATC--TCA-T---T-TATT----------CTTG-T---C-A-----AAA-TGA-TACAATGCTCGGCAG---------T---GCATCA-CATAATATA-T-TTTT-AACAACTCGtttcctgacgtaacatc
gi|17 : tttcctgagttat---C--ATGAC------ATAT--TCTTGATATT----------GTA------C-CTATGGAAT-CATCACT-TGTTGTGG---TCCATATAACT
gi|2 : taaaaTAATTA--TGCTTTAAT-ATTTCC-TTA--TTGCTTA-TGA---AT-GTAG-ATCCAGTATATAT--AATCACATAATTTAC----GGTGCAGGAGTGTAATAAAC--CGAACTAATGAC------ATAT--TTTTTGTATTAACATA--GTGTAAT-A-TCTCTTTCGATT-CATCGCT-CGGTGTTG---TCCGTATAACTCGGCTCT--CGTACGTAATTTGTCGAGGTACTTTCC-GACTTG----------CT------------------TGGATA-----TATA-----AA-T--GACG----TC-------G-A----TT-------------------------A--C-----GTC-----A---CA--TGATGAT--TA-CCGGAAAC------AAAT---ATG-------------------CCAGATT-TGTTCTCGTTCTTTAAAGAGGTTA----TCTGTTTAATATATGGTAAAA-----A--TGAAA--AAAAAT--CCTGAAT---TATGTGA-TA-AA-AC----GAATTTTACAGTCGTGCT-CATTT-A-TTGTT--GAA-T---T-TATC---A----AATTCG-TTGGG-A-----AAA-TGA-TATAATACTCGGTAG---------AGCCGCCTCG-CATAACATAGA-TTTT--CCAACTTGTTCAAT-AA---CTTCAATAATAAATAAACACTCATGTAAAATCCTC--TATATATCTGACGAGAGttctaacttgtgatgtcaaata
gi|3 : actaagttaaaga---TTA-TTA---AT-ATAG-AT----------T--TATCACATAATTTGC----AGTGCAAGAGTGTAATAAAC--C---C--ATGAC------ATAT--TTCTTATATAAACAAA--GTGTAAT-A-TCACTTCCAATT-CATCGCT-CAGCAATT---CCCATACAA-------CT--TGCACATAAAATGCCAAACTACTTTCT-GACTTG----------TC------------------CAAACA-----TATAAAATTAA-T--GCAG----TT-------G-A----TT----------------------------C-----GTC-----ATGGTA--AAATGACATTATTTGGAGACTTTGTGTAATGCAATGACTGGTGAAAACGTATTTGCCCATTT-TTTTCTAAATTTTTATAGCGGTGATCATTCTG-AAAAGAAATAGT--AA-----A--TGTTC--CATTTT--CTTGAG----TACGTGATTA-AA-A------------------GTGCT-CATTT-A-TAATT--CAG-T---T-T------------ACTCA-TCGGC-A-----AAA-----------------------------------------ATGATATA-T-TTTTGGACAATTCGTTAAAT-AT---AGTCAGTAATAAATGAGCACTCACATAAGATTCTT--TATATATCaacgcgagtatctagtctaacgttg
gi|4 : ctaacctaaagattatatattgtaaccccctccttccctataatcagattgttgatattacatatagggACTATT-TAA--T---GTA-CAA---AT-A-AA-AT----------G--AATAACATAAGTTATTGTTGGTGCAG-AGTGTAATAAAC--T---C--ATAA-------------TTTTGATATTAACCTG--GTGTAAT-A----CTGTC-ATG-TATCTCTACCGCGTCA----ACGTGCAG--CGGA-CT--TGTCCG-AACTTATC-AATAACCT--C-GATTTGTGGTGTTCTTCC------------------CGGACG-----T-T-------------ACG----TC----------------------------------------------------------A---TA--CTATGAC--TG-ACGGAAAC------TAAT---ACG--------------------CGCGTT-TTTTCTCA-TCCTGATAGAGCTGA----TGTGTAAAATAAATAGT--AATGTAGA--TCTAC--CATTTA--CCTGAGA---TGTGTGA-TACAA-A-----GAATCTTGCATTCGTGCC-CATTT-ATTTTTT--TAA-TCC-T-TA-----A----AACTCG-TTGGC-A-----AAATTGA-TATGATGCTCGGCCG---------A---GCCTCG-CATAATA-A-A-TGTT-GCCAACTCAATTAAT-AA---ATTCAATAATAAATAAGCATTCTTGTAAGATTCTC--CATTTATattctgttatgaaattacatg
gi|5 : tattgtatccctcacctttacacgcatagtgcatagccaaattgaagattatgtgtTAATCACATAATTTGGCAACTA----TA--T---T---------AT-GTCA-AT----------T--TATCA--TGAGTGACT---GGTACATGAGTGTAATAAAC--T---C--ATGCC------ATATTATTTTTATAT-----TA--GAGTTAT-A-TCATTACCGATC-AACCGTA-CAAC-------------TGACTCTGCTTT--CGTAGGTAAAATGAGGAACT-TTTTCC-GGCTTG----------TC------------------GGCGCA-----TCTA-----AA-T--GACG----TC-------GCA----TT-------------------------tattatcaaaccagtcatgtt
gi|5 : gaATC-CTTGCTCGTTTTATATAGAAATTA----CTT-TAAAATAAATGTC--AT-----A--TGTAC--CAATGT--TCTTAGT---T-----A-TA-AA-AT----GAACCATACAATCGTGCT-ATTTT-A-TTATA--TAT-T---T-TTTTTTAA----AACTTG-TTTGC-AC----AAA-AGAGTATTATGCACAACGATAATTTTGCA---ACCCCGCCATCATACG-A-TTTT-GTCAATTCATTTAAT-AA---TTTTAAACATAAATGAGC-CTCgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatatccttgctcgttttatatagaaattactttaaaataaatgtcatatgtaccaatgttcttagttataaaatgaaccatacaatcgtgctattttattatatatttttttttaaaacttgtttgcacaaaagagtattatgcacaacgataattttgcaaccccgccatcatacgattttgtcaattcatttaataattttaaacataaatgagcctc
gi|6 : gataatcacataatttggcaactatattatgtcaatttatcatgagtgactggtacatgagtgtaataaactcatgccatattatttttatattagagttatatcattaccgatcaaccgtacaactgactctgctttcgtaggtaaaatgaggaactttttccggcttgtcggcgcatctaaatgacgtcgcattgtaatagtataataatgtgataatgagactttacatcatctgatggaagacgaaaattactcaaaaaagttttattttttataatcttgaataaaatTAA-TT----------T--TACTACGTAATTTAT----TGTGCAGGAATGTAATAAAC--C---T--ATGAC------ATGT--CTTTGTTATTAAATTATAGTGTAAT-A-TC-A---CGATTTCTTCCCT-CG-TGTAA---ACCGTATAACTTGACTCT--TGTACATACAATGCAAAACGACTTTCT-GTCTTA----------CC------------------CGAAAA-----TATA-----TA-A--GACA----TA-------A-A----TT-------------------------A--
gi|6 : at-TTTTCTTGTTCCTTAGAAAGATGA----AATGAAAAATTAATGG----A-----A---------CAATTT-----AAGTAAATAAGTG--TA-CA-ATGTTTGTGTGTTACATTCA-----CATTTCA-TTACT----A-T---T-TAAT---A--------------GC-A-----AA------TATTATG------------------------TC------ATTTA-A-TTTT-GCTATCTCATTTAAT-AATCAATTCAATAATAAACGAGAACTCATGTAatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagcaaatattatgtcatttaattttgctatctcatttaataatcaattcaataataaacgagaactcatgtatctattatagcattaccctggtttggagactttccatgttcat
gi|6 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttg--CCAGGGT---AATGCTA-TA-AT-A-----GA----TACATGAGTTCT-CGTTT-A-TTATT--GAA-TTGAT-TATT---A----AATGAG-ATAGC-AAAATTAAA-TGA-CATAATATTTGtctattatagcattaccctggtttggagactttccatgttcat
gi|7 : attaattttactacgtaatttattgtgcaggaatgtaataaacctatgacatgtctttgttattaaattatagtgtaatatcacgatttcttccctcgtgtaaaccgtataacttgactcttgtacatacaatgcaaaacgactttctgtcttacccgaaaatatataagacataaattaatcactgaaaatgtaattattgtgactattgtaattataagtgaatgacacgcaatgactgacagaaacatatttgttatttacagcattttggaaaaacctttttgttttcttgttccttagaaagatgaaatgaaaaattaatggaacaatttaagtaaataagtgtacaatgtttgtgtgttacattcacatttcattactatttaatagTAATGA--TGGTTTAACAAGTACC-TTA--T---ATAATAA---ATTATAGGAT----------T--TAT-----AACTTCC----TATGGAAGAGTGTAATAAAC--G---C--AAGAC------GT-T--TTCTTATATTAACTCA--GTGTAAT-A-TCACTACCGATT-CATCGTT-CGGAGTTT---TCCGTATAACTCGTCTTT--CGTACGTAAATTACCGAACTATTTTAC-GATTT-------------------------------------------ATG-----AC-T--AATG----TC-------G-A----TTCGTCAAAGTTATTTTGAGACATTACA--C-----GTC-----A---TA--CGATGAC--TG-ACCGAAAT------TAAT-----G-------------------ACAC------TCCACGTAACT---AGAGGTTA----TTTTAGAAATAAATTGT--AA-----T--TGTAT--TTTTTTT-CCTGATG---TATGTGA-TA-AAGA-----AAATCTTACATCCGTTCT-CATTT-A-TTATT--TAA-T---T-TATT--------AACTCG-TCGGC-A-----AAACTGG-TATGATGTGTGACAG---------A---GCCTTG-CATAATATA-T-TGTT-ACCAACTC-TTTGGT-AA---ATTCAATAATAAACGAGCACTCTTGTAAGATCCTCAATATATAGCTAGCTAGAGtttggagactttccatgttcat
gi|8 : --T---TTA-TAACGTAT-TTGT-AT----------T--TATCACATAATTTAC----GGTGCATGAGTGTAATAACC--C---A--ATGAC------ATA---TTTTGATATTAACCTA--GTGTAAT-G-TCACTTCCGAAC-CCTCACT-CGGTGATT---TCCGTATAACTCAGCTCT--CGTACGCAATATGCTGAAGTGCTTTCC-AACTTG----------CC------------------CGGACT-----CATG-----AA-T--G--G----TC-------G-A----TT-------------------------gcg
gi|8 : tgatatcacgtatcgaacg-A----TT-------------------------A--C-----ATC-----A---TA--CGATGAC--TA-ACGGATAC------TAAA---ATG-------------------AACAATT-CTTCCTCATTCTTTATAGAGGTGA----CATGAAAAATAAATTGT--AA-----A--TGCAC--CAATTT--CCTGAGT---CATCTGA-CA-----------------ACATTTGCATTACATTT-A-TTATT--TAA-----T-TAT----------------------A-----AAA------------CTCGACAG---------A---GCATCG-CATGATAT--A-TTTT-GTCAACTCGTTTAAT-AA---ATTCAATAA-AAATTAGCGCTCATGTAAGATCCCA--TATATATCtgttatgataatacacacattaaatttgttttagacattacatcatacgatgactaacggatactaaaatgaacaattcttcctcattctttatagaggtgacatgaaaaataaattgtaaatgcaccaatttcctgagtcatctgacaacatttgcattacatttattatttaattataaaactcgacagagcatcgcatgatatattttgtcaactcgtttaataaattcaataaaaattagcgctcatgtaagatcccatatatatc
gi|9 : tgatatcacgtatcgaacgtttataacgtatttgtatttatcacataatttacggtgcatgagtgtaataacccaatgacatattttgatattaacctagtgtaatgtcacttccgaaccctcactcggtgatttccgtataactcagctctcgtacgcaatatgctgaagtgctttccaacttgcccggactcatgaatggtcgatttgttatgataatacacacattaaatttgttttagacATAGTTTAC----AGTGCAAAAGT--AATAAAC--C------ATGAC------ATAT--TTTTGATATTAAC-------------------TACCGATT-CATTACT-CCGTGTTG---TCTGTATAACTTGGCACTTATATATGTTAAATATGGAGCTTTTTTTCGGACTTG----------CT------------------CGAATA-----TCTT-----AA-T--CATG----TT-------A-A----TT----------------------------T-----ATT-----A---AATGCAATGAC--TG-ATAGAAAC------CAAT---
gi|9 : t--AA-----A--TGCTC--TATTTTTGCCTG------TATG--------G-A-----GAATCTTACATTTGTCCT-TGTTT-G-TTATT--GAA-T---T-TATT---A----AA-TCATTTGGC-A-----AAG--AA-TA-CATTCT---TAG---------A-------TG-CATTATATA-ATTTTT-GCTAA---GTTTAAT-AA---ATTTATTGCTAAATGAGCActattatttatagaatcttggaaaaacaatttttcttattccctgcagagctccattcatgctcatttagcaataaatttattaaacttagcaaaaattatataatgcatctaagaatgtattctttgccaaatgatttaataaattcaataacaaacaaggacaaatgtaagattctccatacaggcaaaaatagagcattttttaacgaacttgattttattttggatcttagtttagatcagactcaaaagtttgatttaatatacaggtgtatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACTTTATTCAATTTGTTAATAAAAATGCCAAAACCTGTGACATCTGCATTTATGCAACTTGTTTAATTAAT