lowQualScore : 222 4444 11 1 1 11 11 1
lowQualScore : 999 4 44 6 4444 88 33 7 2 2 2 5 7 2 2 2 2 2 2 444 77 77777 9 44 88 4 5 6
lowQualScore : ... . .. . .... .. .. . . . . . . . . . . . . ... .. ..... . .. .. . . .
lowQualScore : 111 9 22 0 3333 44 99 1 5 5 5 0 5 5 5 5 5 7 7 777 11 11111 3 22 22 2 2 0
consensus : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGA--GTGTTTTTA-ATTTTTTCC--CTTTTTTACCCAATTATTGAATTTATTT-CTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTCAAAA---AC-TGACCACAGAGGACA-----TATCA--TGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
Reference ( gi|4 ) : AAAGTAACAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGA--GTGTCT--A-ATTTTTTCC--CTTTTATACCCAATTATTGAATTTATTT-CTCACAATACAGCAACAA-CAAA-TTGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTCAAAA---AG-TGACCACAGAGGACA-----TGTCA--TGAT-ATGATGCTACACCCCAACTATCTTGACCATGTACTATCTTCGGAGATCTTTTA
gi|1 : AAAGTACTCAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAAGTTCACGTAGAAAGTATAATAAGGAAGA--GTGTTTTTA-ATTTT-TCC--CTTTCTTACCCAATTATTGAATTTATTT-CTCACAATACAGCAACAT-CATA-TGGTTGAACAATTTGTTTT-CTAGGCACAAATATTC-TTCT-TGT-GTAACAACTTCAGTCTA-CAGTAATGACATAATTTCAGATTGCCATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATTCATTTAAATATCAGTTTCTCTGGAGACTCAAAA---AC-TGACCACAGAGGACA-----TATCA--TGAG-TTGATGATACACCCCAACTAACTTGACCATGTACTGTCGTCGGAGATTTTT
gi|8 : cAAAGTA-CTCAAGTACTGGTGATCGGTGCGTGTTTTTTTGGGGAAATATTTCTTGAAGGTTCACGAAAAAAGTATAATAAGGAAGA--GTGTTTTTA-ATTTTTCCC--TTTTTG-ACCCAATAATTGAATGTTTTT-C-CAGAATACAGCAACAA-CAAA-TGGTTAAACAATTTGTTTT-CTAAGCTCAAATACTC-TTTT-TGT-CTAACAACTTCAGT--------------A--ATTTCAGATTGAGATATCTCCACT-ACAGTGAAAG-TTTTATCACAATGCATTTAAATATCAGTTTCTCTGGCGACTCAAAA---AT-TGACCACAGAGGACA-----TATCA--TGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTG---TCGTAGATTTTTgaa
gi|9 : tcAAAGTACTTATAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCAAGAAGAAAGGATAATAAGGAAGA--GTGTTT--TTATTTTTTCCATTTTTTTTACCAAATTATTGAATTTATTT-CTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTA-CTAGGCACAAACACTC-TTTT-TGT-CTAACACTTTCAGATTA-CAGTAATGTCATAATTTCATATTGTTATATCTCTACT-ACAGTGAAAG-TTGTGTCACAATGCATTCAA------------------------AA---AC-TGACCACAGAGGACA-----TATCA--TGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGATGATTTTT
gi|15 : tcAAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTTTATAAAGAAGTATTTATTGAACGTTCACGAAGAAAGTTTGATAAAAAGGA--GTGTTTTTA-ATTTT-TCC--CTTTTTTACTCAATTATTGAATTTATTT-CTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTT-CTAGGTACAAACACTC-TTTT-TGT-CTAACAATTTCAGTCTA-CAGTAATGACATCATTTCAGATTGCGATga
gi|13 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTATATAGGGAAATATTTATTGAAGGTTC
gi|18 : cAAAGTACTTGAAGTATTGGTGGCGGGTGCATGTTCTccttttttacccaattattgaatttattactcacactacaacaacattcaaatggttgaacaatttcttttctaagcacaaacactctttttgtcttacaacttcagtatacagtaatgacatcatttcagattgtgatatctctactacagtgaaagttttgtcacaatgcatttaaatatcaatttctctggcgactcaaaaactactgaccacagaggacctaccattagatgatatta
gi|5 : atcAAGTACCAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGA--GTGTTT--TTATTGTTTCC--CCTTTTTACCCAATTATTGAATTGATTT-CTCATAATACAGCAACAA-CAAA-TGGTTAAACAATTTGTTTTTCTAGGCACAAACACTC-GTTT-TGT-CTCACAACTTCAGTCTA-CAGTAATGACATCATTTCATATTGTGATATCTCTGCT-ACAGTGAATG-TTTTGTCACAATGCA-TTAAATATCAGTTTCTCTGGCGACTCAAAA---AC-TGACCACAGAGGACA-----TATCA--TTTG-ATGATGCTACACCCCAACTATCTTGACCATGTACTATAGTCGGAGATTTTTTAc
gi|3 : AAGTATTTAAAGTACTGACGGCTGGTGCATGTTTTTATAGGGAAATGTTTATTGAAGGTTCACGAAAAAAGTATAATAAGGAAGA--GTGTTTTTA-ATTGTT-CC--CTTTCTTACCCAATTATTGATTTTTTTTTCTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTT-CAAGGCACAAACACTC-TTAA-TGT-CTAACAACTTCAGTCTATCAGTAATGAAATAATTTTAGATTGTCAAATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTCAAAA---AC-TGACCACAGAGGACA-----TATCA--TGTG-ATGATGCTACACCCCAACTATCTTGACCATGAACTGTCGTCGGAGATTTTT
gi|6 : AAGTACTCAAAATACTGGTGGCCGGTGTATGTTTTTATTTGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGA--GTGTTTTTA-ATTTTT-CC--CTTTTTTACCCAATTATGGAATTTATTT-CTCACAGTACAGCAACAA-AAAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCGGTCTA-CAGTAATGGCATCATTTTAGATTTTGATAACTCTACT-ACAGTGACAG-TTTTGTTACAATGCATTTAAATATCAGTTTCTCTGGTGACTCAAAA---AC-TGACCGAAGAGGACA-----T---A--TGAG-ATAATGCTACACCCCAACTATCTTGACCATGAACTGTTGTCTGAGATTTTTga
gi|11 : AAGTACTCAAAGTACTGCTGGCCAGTGCATGCTTTTATTGGGAAATATTTACTGA-GATTCACGAAGAAAGTATAA---GGAAGA--GTGTTTTTA-ATTTTT-CC--CTTTTTTACCCAATTA-------------CTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTTTTTTTCTAAGCACAAACACTC-TTTT-TGT-CTTACTACTTCAATCTG-CAATAATGACATCATTTCAGATT------------------GTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCAACTCAAAA---AACTGACCACAGAGGACATAATTTATCA--TGAG-ATGATGCTACACCCCAACTATCTTGACCATGTATTGTCGTCGGAGATgaa
gi|7 : AAAGTACTGGTGGCCGGTGCATGTTTTTAAAGGGAAATATTTATTGAAGGTTCACGAAGAAA-TATAATAAAGAAGA--GTGTTTTAA-ATTTT---C--CTTTTTTACCCAATTATTGAATTTATTT-CTCACAATACAGCAA-AA-CAAA-TGGTTGAACAAATTGTTTTTCTAGGCACAAACACTCGTTTT-TGT-CTAACAACTTCAGTCTA-CAGTTATCACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTCAAAA---AC-TGACCACAGAGGACA-----TATCA--TGAG-ATGATGCTACACCCCAACTATCTTGATCATGTACTGTCATCGGAGATTTTTtattgaa
gi|2 : attgAAGTACTGGAGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTTACGAAGAAAGTATGATAAGAAAGA--GTGTTT--TTATTTTTTCC--CTTTTTTAACCAATTATTGAATTTTTTT-CTCACAATACAGCAACAA-CGAA-TGGTTGAACAATTTGTTTT-CTAGGCACAAACTCTC-TGAT-TGT-CTAACAACTTCAGTCTA-CAGTAATGGCATCATTTCAGATTGTGATAACACTACT-ACAGTGAAAG-TTTCGTCACAATGCATTTAAATATCAGTTTCTCTTGCGACTCAAAA---AC-TGACCACAGAGGACA-----TATCATGTGA--ACAAT-TTAAACCCGAGTTATCTTGACCATGTACTATCGTCGGAGATTTTTga
gi|10 : tcaaagaactctGTACTGGTGGCCGGTGCATGCTTTTATAGGGAAATAATGATTGAAGGTTCACGAAGGAAGTATAATAATGAAGA--GTGTTTTTA-ATTTTC-CC--CTTTTGTTCCCAATTATTGAATTTATTT-CTCACAATACAGC-----------TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTTTTGT-CTAACAACTACGGTCTA-CAGTAATGCCATTATTTCAGATTGTGATATCTCTACTAACAGTAAAAG-TTTTGTCACAATGCATTTAAA-ATCAGTTTCTCTGGCGACTGAAAA---AC-TGACCACAGAGGACA-----TATCA--TGAG-ATGATGCTACACCCCAACTATTTTGACCATGAACTGTCGTCGGAGATga
gi|14 : GGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGA--GTGTTTTTA-ATTTTC-CC--CTTTTTTAACCAATTATTGAATTTATTT-CTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACTACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAGTTTTTGTCACAATGCATTTACATATCAGTTTCTCTGGCGACTC-AAA---AC-TGACCATAGAGGATA-----Tt
gi|12 : GCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAATGTGTTT--A-ATTTGT-CC--CTTTCTTACCCAATTATTGAATTTATTT-CTCACAATACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CATTAATTACATAATTTCAGATTGTCATATCTCTACT-AAAGTGAAGG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTCAAAA---AC-TGACCACAG-----------------------ATGATGATACACCCCAGTTATTGTGACCATGTACTCTCGTCGGAGGTTTTT
gi|13 : TTCC--CTTTTTTACCCAATTATTGAATTTATTA-CTCACACTACAACAACATTCAAA-TGGTTGAACAATTTCTTTT-CTAAGCACAAACACTC-TTTT-TGT-CTTACAACTTCAGTATA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAATTTCTCTGGCGACTCAAAAACTAC-TGACCACAGAGGACC-----TACCA--TTAG-ATGATATTAga
gi|17 : caaagtactaaaagtactggtggccggtgcatgtttatatagggaaatatttattgaaggTTT-TACCAAATTATTGAAATTATTT-CTC----T---GCAACAA-CAAA-TGGTTGAACGATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CTGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-GTTTGTCACAATGCATTTAAATATCAGTTTCCCTGGGGACTCAAA---------ACCACAGAGGA
gi|16 : TT-CTCACAACACAGCAACAA-CAAA-TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TTTTCAAACACATTCAGTCTA-CAGTAATGACATCATTTCAGATTGTTATATCTCTACT-ACAGTGAAAG-TTTTGTCTCAATGCA-TTAAA------------------------A---AC-TGACCACAGAGGACA-----TATCA--T-ATGATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCAGAGATTTTT
Alignments
lowQualScore : 11
lowQualScore : 1 1 11 33 2 2 2 7 2 2 2 2 2 2 2 444 66666 2
lowQualScore : . . .. .. . . . . . . . . . . . ... ..... .
lowQualScore : 0 5 77 77 5 4 4 1 4 4 4 4 5 5 5 444 77777 9
consensus : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
Reference ( family-4172 ) : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
gi|1 : AAAGTACTCAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAAGTTCACGTAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTT-TCC--CTTTCTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AT-CATATGGTTGAACAATTTGTTTT-CTAGGCACAAATATTC-TTCT-TGT-GTAACAACTTCAGTCTA-CAGTAATGACATAATTTCAGATTGCCATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATTCATTTAAATATCAGTTTCTCTGGAGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-TTGATGATACACCCCAACTAACTTGACCATGTACTGTCGTCGGAGATTTTT
gi|10 : cGTACTGGTGGCCGGTGCATGCTTTTATAGGGAAATAATGATTGAAGGTTCACGAAGGAAGTATAATAATGAAGAGTGTTTTTAATTTTC-CC--CTTTTGTTCCCAATTATTGA-ATTTATTTCTCACAATACAGC-----------TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTTTTGT-CTAACAACTACGGTCTA-CAGTAATGCCATTATTTCAGATTGTGATATCTCTACTAACAGTAAAAG-TTTTGTCACAATGCATTTAAA-ATCAGTTTCTCTGGCGACTG-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATTTTGACCATGAACTGTCGTCGGAGATTgaa
gi|11 : AAGTACTCAAAGTACTGCTGGCCAGTGCATGCTTTTATTGGGAAATATTTACTGA-GATTCACGAAGAAAGTATAA---GGAAGAGTGTTTTTAATTTTT-CC--CTTTTTTACCCAATTA-------------CTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTTTTTTTCTAAGCACAAACACTC-TTTT-TGT-CTTACTACTTCAATCTG-CAATAATGACATCATTTCAGATT------------------GTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCAACTCAAAAA---ACTGACCACAGAGGACATAATTTATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTATTGTCGTCGGAGATTATT
gi|12 : GCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAATGTGTTTAATTTGT-CC--CTTTCTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CATTAATTACATAATTTCAGATTGTCATATCTCTACT-AAAGTGAAGG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCAC--------------------AG-ATGATGATACACCCCAGTTATTGTGACCATGTACTCTCGTCGGAGGTTTTTgaa
gi|13 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTATATAGGGAAATATTTATTGAAGGTTCga
gi|13 : cTTCC--CTTTTTTACCCAATTATTGA-ATTTATTACTCACACTACAACAAC-ATTCAAATGGTTGAACAATTTCTTTT-CTAAGCACAAACACTC-TTTT-TGT-CTTACAACTTCAGTATA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAATTTCTCTGGCGACTC-AAAAACTACTGACCACAGAGGACC-----TACCATTAG-ATGATATTAccttttttacccaattattgaatttattactcacactacaacaacattcaaatggttgaacaatttcttttctaagcacaaacactctttttgtcttacaacttcagtatacagtaatgacatcatttcagattgtgatatctctactacagtgaaagttttgtcacaatgcatttaaatatcaatttctctggcgactcaaaaactactgaccacagaggacctaccattagatgatatta
gi|14 : caaagtactaaaagtactggtggccggtgcatgtttatatagggaaatatttattgaaggGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTC-CC--CTTTTTTAACCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACTACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAGTTTTTGTCACAATGCATTTACATATCAGTTTCTCTGGCGACTC--AAA---ACTGACCATAGAGGATA-----T
gi|15 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTTTATAAAGAAGTATTTATTGAACGTTCACGAAGAAAGTTTGATAAAAAGGAGTGTTTTTAATTTT-TCC--CTTTTTTACTCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGTACAAACACTC-TTTT-TGT-CTAACAATTTCAGTCTA-CAGTAATGACATCATTTCAGATTGCGAT
gi|16 : TTCTCACAACACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TTTTCAAACACATTCAGTCTA-CAGTAATGACATCATTTCAGATTGTTATATCTCTACT-ACAGTGAAAG-TTTTGTCTCAATGCATT--------------------------AAAA---ACTGACCACAGAGGACA-----TATCATATG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCAGAGATTTTT
gi|17 : TTTTACCAAATTATTGA-AATTATTTCTC----T---GCAAC-AA-CAAATGGTTGAACGATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CTGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-GTTTGTCACAATGCATTTAAATATCAGTTTCCCTGGGGACTC-AAA--------ACCACAGAGGAaa
gi|18 : AAAGTACTTGAAGTATTGGTGGCGGGTGCATGTTCT
gi|2 : atcAAAGAACTCTAAGTACTGGAGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTTACGAAGAAAGTATGATAAGAAAGAGTGTTTTTA-TTTTTTCC--CTTTTTTAACCAATTATTGA-ATTTTTTTCTCACAATACAGCAAC-AA-CGAATGGTTGAACAATTTGTTTT-CTAGGCACAAACTCTC-TGAT-TGT-CTAACAACTTCAGTCTA-CAGTAATGGCATCATTTCAGATTGTGATAACACTACT-ACAGTGAAAG-TTTCGTCACAATGCATTTAAATATCAGTTTCTCTTGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGTGAACAAT-TTAAACCCGAGTTATCTTGACCATGTACTATCGTCGGAGATTTTTc
gi|3 : tcAAGTATTTAAAGTACTGACGGCTGGTGCATGTTTTTATAGGGAAATGTTTATTGAAGGTTCACGAAAAAAGTATAATAAGGAAGAGTGTTTTTAA-TTGTTCC--CTTTCTTACCCAATTATTGATTTTTTTTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CAAGGCACAAACACTC-TTAA-TGT-CTAACAACTTCAGTCTATCAGTAATGAAATAATTTTAGATTGTCAAATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGTG-ATGATGCTACACCCCAACTATCTTGACCATGAACTGTCGTCGGAGATTTTTga
gi|4 : AAAGTAACAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTCT--AATTTTTTCC--CTTTTATACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATTGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---AGTGACCACAGAGGACA-----TGTCATGAT-ATGATGCTACACCCCAACTATCTTGACCATGTACTATCTTCGGAGATCTTTTAga
gi|5 : AAGTACCAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTA-TTGTTTCC--CCTTTTTACCCAATTATTGA-ATTGATTTCTCATAATACAGCAAC-AA-CAAATGGTTAAACAATTTGTTTTTCTAGGCACAAACACTC-GTTT-TGT-CTCACAACTTCAGTCTA-CAGTAATGACATCATTTCATATTGTGATATCTCTGCT-ACAGTGAATG-TTTTGTCACAATGCATT-AAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATTTG-ATGATGCTACACCCCAACTATCTTGACCATGTACTATAGTCGGAGATTTTTTA
gi|6 : AAGTACTCAAAATACTGGTGGCCGGTGTATGTTTTTATTTGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAA-TTTTTCC--CTTTTTTACCCAATTATGGA-ATTTATTTCTCACAGTACAGCAACAAA-AAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCGGTCTA-CAGTAATGGCATCATTTTAGATTTTGATAACTCTACT-ACAGTGACAG-TTTTGTTACAATGCATTTAAATATCAGTTTCTCTGGTGACTC-AAAA---ACTGACCGAAGAGGACA-----T---ATGAG-ATAATGCTACACCCCAACTATCTTGACCATGAACTGTTGTCTGAGATTTTT
gi|7 : ATTGAAAGTACTGGTGGCCGGTGCATGTTTTTAAAGGGAAATATTTATTGAAGGTTCACGAAGAAA-TATAATAAAGAAGAGTGTTTTAAATTTT---C--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAA--AA-CAAATGGTTGAACAAATTGTTTTTCTAGGCACAAACACTCGTTTT-TGT-CTAACAACTTCAGTCTA-CAGTTATCACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGATCATGTACTGTCATCGGAGATTTTTgaa
gi|8 : AAAGTACTCAA-GTACTGGTGATCGGTGCGTGTTTTTTTGGGGAAATATTTCTTGAAGGTTCACGAAAAAAGTATAATAAGGAAGAGTGTTTTTAATTTTT-CC--CTTTTTGACCCAATAATTGA-ATGTTTTTC-CAGAATACAGCAAC-AA-CAAATGGTTAAACAATTTGTTTT-CTAAGCTCAAATACTC-TTTT-TGT-CTAACAACTTCAGT--------------A--ATTTCAGATTGAGATATCTCCACT-ACAGTGAAAG-TTTTATCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ATTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGT---AGATTTTTga
gi|9 : tcAAAGTACTTATAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCAAGAAGAAAGGATAATAAGGAAGAGTGTTTTTA-TTTTTTCCATTTTTTTTACCAAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTA-CTAGGCACAAACACTC-TTTT-TGT-CTAACACTTTCAGATTA-CAGTAATGTCATAATTTCATATTGTTATATCTCTACT-ACAGTGAAAG-TTGTGTCACAATGCAT------------------------TC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGATGATTTTT
Alignments
lowQualScore : 11
lowQualScore : 1 1 11 33 2 2 2 7 2 2 2 2 2 2 2 444 66666 2
lowQualScore : . . .. .. . . . . . . . . . . . ... ..... .
lowQualScore : 0 5 77 77 5 4 4 1 4 4 4 4 5 5 5 444 77777 9
consensus : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
Reference ( family-4172 ) : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
gi|1 : AAAGTACTCAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAAGTTCACGTAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTT-TCC--CTTTCTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AT-CATATGGTTGAACAATTTGTTTT-CTAGGCACAAATATTC-TTCT-TGT-GTAACAACTTCAGTCTA-CAGTAATGACATAATTTCAGATTGCCATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATTCATTTAAATATCAGTTTCTCTGGAGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-TTGATGATACACCCCAACTAACTTGACCATGTACTGTCGTCGGAGATTTTT
gi|10 : cGTACTGGTGGCCGGTGCATGCTTTTATAGGGAAATAATGATTGAAGGTTCACGAAGGAAGTATAATAATGAAGAGTGTTTTTAATTTTC-CC--CTTTTGTTCCCAATTATTGA-ATTTATTTCTCACAATACAGC-----------TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTTTTGT-CTAACAACTACGGTCTA-CAGTAATGCCATTATTTCAGATTGTGATATCTCTACTAACAGTAAAAG-TTTTGTCACAATGCATTTAAA-ATCAGTTTCTCTGGCGACTG-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATTTTGACCATGAACTGTCGTCGGAGATTgaa
gi|11 : AAGTACTCAAAGTACTGCTGGCCAGTGCATGCTTTTATTGGGAAATATTTACTGA-GATTCACGAAGAAAGTATAA---GGAAGAGTGTTTTTAATTTTT-CC--CTTTTTTACCCAATTA-------------CTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTTTTTTTCTAAGCACAAACACTC-TTTT-TGT-CTTACTACTTCAATCTG-CAATAATGACATCATTTCAGATT------------------GTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCAACTCAAAAA---ACTGACCACAGAGGACATAATTTATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTATTGTCGTCGGAGATTATT
gi|12 : GCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAATGTGTTTAATTTGT-CC--CTTTCTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CATTAATTACATAATTTCAGATTGTCATATCTCTACT-AAAGTGAAGG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCAC--------------------AG-ATGATGATACACCCCAGTTATTGTGACCATGTACTCTCGTCGGAGGTTTTTgaa
gi|13 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTATATAGGGAAATATTTATTGAAGGTTCga
gi|13 : cTTCC--CTTTTTTACCCAATTATTGA-ATTTATTACTCACACTACAACAAC-ATTCAAATGGTTGAACAATTTCTTTT-CTAAGCACAAACACTC-TTTT-TGT-CTTACAACTTCAGTATA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAATTTCTCTGGCGACTC-AAAAACTACTGACCACAGAGGACC-----TACCATTAG-ATGATATTAccttttttacccaattattgaatttattactcacactacaacaacattcaaatggttgaacaatttcttttctaagcacaaacactctttttgtcttacaacttcagtatacagtaatgacatcatttcagattgtgatatctctactacagtgaaagttttgtcacaatgcatttaaatatcaatttctctggcgactcaaaaactactgaccacagaggacctaccattagatgatatta
gi|14 : caaagtactaaaagtactggtggccggtgcatgtttatatagggaaatatttattgaaggGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTC-CC--CTTTTTTAACCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACTACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAGTTTTTGTCACAATGCATTTACATATCAGTTTCTCTGGCGACTC--AAA---ACTGACCATAGAGGATA-----T
gi|15 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTTTATAAAGAAGTATTTATTGAACGTTCACGAAGAAAGTTTGATAAAAAGGAGTGTTTTTAATTTT-TCC--CTTTTTTACTCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGTACAAACACTC-TTTT-TGT-CTAACAATTTCAGTCTA-CAGTAATGACATCATTTCAGATTGCGAT
gi|16 : TTCTCACAACACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TTTTCAAACACATTCAGTCTA-CAGTAATGACATCATTTCAGATTGTTATATCTCTACT-ACAGTGAAAG-TTTTGTCTCAATGCATT--------------------------AAAA---ACTGACCACAGAGGACA-----TATCATATG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCAGAGATTTTT
gi|17 : TTTTACCAAATTATTGA-AATTATTTCTC----T---GCAAC-AA-CAAATGGTTGAACGATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CTGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-GTTTGTCACAATGCATTTAAATATCAGTTTCCCTGGGGACTC-AAA--------ACCACAGAGGAaa
gi|18 : AAAGTACTTGAAGTATTGGTGGCGGGTGCATGTTCT
gi|2 : atcAAAGAACTCTAAGTACTGGAGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTTACGAAGAAAGTATGATAAGAAAGAGTGTTTTTA-TTTTTTCC--CTTTTTTAACCAATTATTGA-ATTTTTTTCTCACAATACAGCAAC-AA-CGAATGGTTGAACAATTTGTTTT-CTAGGCACAAACTCTC-TGAT-TGT-CTAACAACTTCAGTCTA-CAGTAATGGCATCATTTCAGATTGTGATAACACTACT-ACAGTGAAAG-TTTCGTCACAATGCATTTAAATATCAGTTTCTCTTGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGTGAACAAT-TTAAACCCGAGTTATCTTGACCATGTACTATCGTCGGAGATTTTTc
gi|3 : tcAAGTATTTAAAGTACTGACGGCTGGTGCATGTTTTTATAGGGAAATGTTTATTGAAGGTTCACGAAAAAAGTATAATAAGGAAGAGTGTTTTTAA-TTGTTCC--CTTTCTTACCCAATTATTGATTTTTTTTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CAAGGCACAAACACTC-TTAA-TGT-CTAACAACTTCAGTCTATCAGTAATGAAATAATTTTAGATTGTCAAATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGTG-ATGATGCTACACCCCAACTATCTTGACCATGAACTGTCGTCGGAGATTTTTga
gi|4 : AAAGTAACAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTCT--AATTTTTTCC--CTTTTATACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATTGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---AGTGACCACAGAGGACA-----TGTCATGAT-ATGATGCTACACCCCAACTATCTTGACCATGTACTATCTTCGGAGATCTTTTAga
gi|5 : AAGTACCAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTA-TTGTTTCC--CCTTTTTACCCAATTATTGA-ATTGATTTCTCATAATACAGCAAC-AA-CAAATGGTTAAACAATTTGTTTTTCTAGGCACAAACACTC-GTTT-TGT-CTCACAACTTCAGTCTA-CAGTAATGACATCATTTCATATTGTGATATCTCTGCT-ACAGTGAATG-TTTTGTCACAATGCATT-AAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATTTG-ATGATGCTACACCCCAACTATCTTGACCATGTACTATAGTCGGAGATTTTTTA
gi|6 : AAGTACTCAAAATACTGGTGGCCGGTGTATGTTTTTATTTGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAA-TTTTTCC--CTTTTTTACCCAATTATGGA-ATTTATTTCTCACAGTACAGCAACAAA-AAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCGGTCTA-CAGTAATGGCATCATTTTAGATTTTGATAACTCTACT-ACAGTGACAG-TTTTGTTACAATGCATTTAAATATCAGTTTCTCTGGTGACTC-AAAA---ACTGACCGAAGAGGACA-----T---ATGAG-ATAATGCTACACCCCAACTATCTTGACCATGAACTGTTGTCTGAGATTTTT
gi|7 : ATTGAAAGTACTGGTGGCCGGTGCATGTTTTTAAAGGGAAATATTTATTGAAGGTTCACGAAGAAA-TATAATAAAGAAGAGTGTTTTAAATTTT---C--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAA--AA-CAAATGGTTGAACAAATTGTTTTTCTAGGCACAAACACTCGTTTT-TGT-CTAACAACTTCAGTCTA-CAGTTATCACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGATCATGTACTGTCATCGGAGATTTTTgaa
gi|8 : AAAGTACTCAA-GTACTGGTGATCGGTGCGTGTTTTTTTGGGGAAATATTTCTTGAAGGTTCACGAAAAAAGTATAATAAGGAAGAGTGTTTTTAATTTTT-CC--CTTTTTGACCCAATAATTGA-ATGTTTTTC-CAGAATACAGCAAC-AA-CAAATGGTTAAACAATTTGTTTT-CTAAGCTCAAATACTC-TTTT-TGT-CTAACAACTTCAGT--------------A--ATTTCAGATTGAGATATCTCCACT-ACAGTGAAAG-TTTTATCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ATTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGT---AGATTTTTga
gi|9 : tcAAAGTACTTATAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCAAGAAGAAAGGATAATAAGGAAGAGTGTTTTTA-TTTTTTCCATTTTTTTTACCAAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTA-CTAGGCACAAACACTC-TTTT-TGT-CTAACACTTTCAGATTA-CAGTAATGTCATAATTTCATATTGTTATATCTCTACT-ACAGTGAAAG-TTGTGTCACAATGCAT------------------------TC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGATGATTTTT
blockSeqs : C A TT AT T A T T G T T T A T A ACT TAATT A
blockSeqs : A A TT . . . . T . . . . . . . . . .
blockSeqs : A A TT . . . . T . . . . . . . . . .
blockSeqs : T A TT . . . . . . . . . . . . . . .
blockSeqs : C A TT . . . . . . . . . . . . . . .
blockSeqs : T A TT . . . . . . . . . . . . . . .
blockSeqs : A A TT . . . . . . . . . . . . . . .
blockSeqs : A A C . . . . . . . . . . . . . . .
blockSeqs : C A T . . . . . . . . . . . . . . .
blockSeqs : G A T . . . . . . . . . . . . . . .
blockSeqs : C . C . . . . . . . . . . . . . . .
blockSeqs : T . T . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : TT
originalCons : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
finalCons : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
Alignments
lowQualScore : 11
lowQualScore : 1 1 11 33 2 2 2 7 2 2 2 2 2 2 2 444 66666 2
lowQualScore : . . .. .. . . . . . . . . . . . ... ..... .
lowQualScore : 0 5 77 77 5 4 4 1 4 4 4 4 5 5 5 444 77777 9
consensus : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
Reference ( family-4172 ) : AAAGTACTNAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTTTCC--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGGAGATTTTTTA
gi|1 : AAAGTACTCAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAAGTTCACGTAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTT-TCC--CTTTCTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AT-CATATGGTTGAACAATTTGTTTT-CTAGGCACAAATATTC-TTCT-TGT-GTAACAACTTCAGTCTA-CAGTAATGACATAATTTCAGATTGCCATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATTCATTTAAATATCAGTTTCTCTGGAGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-TTGATGATACACCCCAACTAACTTGACCATGTACTGTCGTCGGAGATTTTT
gi|10 : cGTACTGGTGGCCGGTGCATGCTTTTATAGGGAAATAATGATTGAAGGTTCACGAAGGAAGTATAATAATGAAGAGTGTTTTTAATTTTC-CC--CTTTTGTTCCCAATTATTGA-ATTTATTTCTCACAATACAGC-----------TGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTTTTGT-CTAACAACTACGGTCTA-CAGTAATGCCATTATTTCAGATTGTGATATCTCTACTAACAGTAAAAG-TTTTGTCACAATGCATTTAAA-ATCAGTTTCTCTGGCGACTG-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATTTTGACCATGAACTGTCGTCGGAGATTgaa
gi|11 : AAGTACTCAAAGTACTGCTGGCCAGTGCATGCTTTTATTGGGAAATATTTACTGA-GATTCACGAAGAAAGTATAA---GGAAGAGTGTTTTTAATTTTT-CC--CTTTTTTACCCAATTA-------------CTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTTTTTTTCTAAGCACAAACACTC-TTTT-TGT-CTTACTACTTCAATCTG-CAATAATGACATCATTTCAGATT------------------GTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCAACTCAAAAA---ACTGACCACAGAGGACATAATTTATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTATTGTCGTCGGAGATTATT
gi|12 : GCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAATGTGTTTAATTTGT-CC--CTTTCTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CATTAATTACATAATTTCAGATTGTCATATCTCTACT-AAAGTGAAGG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCAC--------------------AG-ATGATGATACACCCCAGTTATTGTGACCATGTACTCTCGTCGGAGGTTTTTgaa
gi|13 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTATATAGGGAAATATTTATTGAAGGTTCga
gi|13 : cTTCC--CTTTTTTACCCAATTATTGA-ATTTATTACTCACACTACAACAAC-ATTCAAATGGTTGAACAATTTCTTTT-CTAAGCACAAACACTC-TTTT-TGT-CTTACAACTTCAGTATA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAATTTCTCTGGCGACTC-AAAAACTACTGACCACAGAGGACC-----TACCATTAG-ATGATATTAccttttttacccaattattgaatttattactcacactacaacaacattcaaatggttgaacaatttcttttctaagcacaaacactctttttgtcttacaacttcagtatacagtaatgacatcatttcagattgtgatatctctactacagtgaaagttttgtcacaatgcatttaaatatcaatttctctggcgactcaaaaactactgaccacagaggacctaccattagatgatatta
gi|14 : caaagtactaaaagtactggtggccggtgcatgtttatatagggaaatatttattgaaggGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAATTTTC-CC--CTTTTTTAACCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACTACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAGTTTTTGTCACAATGCATTTACATATCAGTTTCTCTGGCGACTC--AAA---ACTGACCATAGAGGATA-----T
gi|15 : AAAGTACTAAAAGTACTGGTGGCCGGTGCATGTTTTTATAAAGAAGTATTTATTGAACGTTCACGAAGAAAGTTTGATAAAAAGGAGTGTTTTTAATTTT-TCC--CTTTTTTACTCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGTACAAACACTC-TTTT-TGT-CTAACAATTTCAGTCTA-CAGTAATGACATCATTTCAGATTGCGAT
gi|16 : TTCTCACAACACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TTTTCAAACACATTCAGTCTA-CAGTAATGACATCATTTCAGATTGTTATATCTCTACT-ACAGTGAAAG-TTTTGTCTCAATGCATT--------------------------AAAA---ACTGACCACAGAGGACA-----TATCATATG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCAGAGATTTTT
gi|17 : TTTTACCAAATTATTGA-AATTATTTCTC----T---GCAAC-AA-CAAATGGTTGAACGATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CTGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-GTTTGTCACAATGCATTTAAATATCAGTTTCCCTGGGGACTC-AAA--------ACCACAGAGGAaa
gi|18 : AAAGTACTTGAAGTATTGGTGGCGGGTGCATGTTCT
gi|2 : atcAAAGAACTCTAAGTACTGGAGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTTACGAAGAAAGTATGATAAGAAAGAGTGTTTTTA-TTTTTTCC--CTTTTTTAACCAATTATTGA-ATTTTTTTCTCACAATACAGCAAC-AA-CGAATGGTTGAACAATTTGTTTT-CTAGGCACAAACTCTC-TGAT-TGT-CTAACAACTTCAGTCTA-CAGTAATGGCATCATTTCAGATTGTGATAACACTACT-ACAGTGAAAG-TTTCGTCACAATGCATTTAAATATCAGTTTCTCTTGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGTGAACAAT-TTAAACCCGAGTTATCTTGACCATGTACTATCGTCGGAGATTTTTc
gi|3 : tcAAGTATTTAAAGTACTGACGGCTGGTGCATGTTTTTATAGGGAAATGTTTATTGAAGGTTCACGAAAAAAGTATAATAAGGAAGAGTGTTTTTAA-TTGTTCC--CTTTCTTACCCAATTATTGATTTTTTTTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTT-CAAGGCACAAACACTC-TTAA-TGT-CTAACAACTTCAGTCTATCAGTAATGAAATAATTTTAGATTGTCAAATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGTG-ATGATGCTACACCCCAACTATCTTGACCATGAACTGTCGTCGGAGATTTTTga
gi|4 : AAAGTAACAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTCT--AATTTTTTCC--CTTTTATACCCAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATTGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCAGTCTA-CAGTAATGACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---AGTGACCACAGAGGACA-----TGTCATGAT-ATGATGCTACACCCCAACTATCTTGACCATGTACTATCTTCGGAGATCTTTTAga
gi|5 : AAGTACCAAAAGTACTGGTGGCCGGTGCATGTTTTTATAGGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTA-TTGTTTCC--CCTTTTTACCCAATTATTGA-ATTGATTTCTCATAATACAGCAAC-AA-CAAATGGTTAAACAATTTGTTTTTCTAGGCACAAACACTC-GTTT-TGT-CTCACAACTTCAGTCTA-CAGTAATGACATCATTTCATATTGTGATATCTCTGCT-ACAGTGAATG-TTTTGTCACAATGCATT-AAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATTTG-ATGATGCTACACCCCAACTATCTTGACCATGTACTATAGTCGGAGATTTTTTA
gi|6 : AAGTACTCAAAATACTGGTGGCCGGTGTATGTTTTTATTTGGAAATATTTATTGAAGGTTCACGAAGAAAGTATAATAAGGAAGAGTGTTTTTAA-TTTTTCC--CTTTTTTACCCAATTATGGA-ATTTATTTCTCACAGTACAGCAACAAA-AAAATGGTTGAACAATTTGTTTT-CTAGGCACAAACACTC-TTTT-TGT-CTAACAACTTCGGTCTA-CAGTAATGGCATCATTTTAGATTTTGATAACTCTACT-ACAGTGACAG-TTTTGTTACAATGCATTTAAATATCAGTTTCTCTGGTGACTC-AAAA---ACTGACCGAAGAGGACA-----T---ATGAG-ATAATGCTACACCCCAACTATCTTGACCATGAACTGTTGTCTGAGATTTTT
gi|7 : ATTGAAAGTACTGGTGGCCGGTGCATGTTTTTAAAGGGAAATATTTATTGAAGGTTCACGAAGAAA-TATAATAAAGAAGAGTGTTTTAAATTTT---C--CTTTTTTACCCAATTATTGA-ATTTATTTCTCACAATACAGCAA--AA-CAAATGGTTGAACAAATTGTTTTTCTAGGCACAAACACTCGTTTT-TGT-CTAACAACTTCAGTCTA-CAGTTATCACATCATTTCAGATTGTGATATCTCTACT-ACAGTGAAAG-TTTTGTCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGATCATGTACTGTCATCGGAGATTTTTgaa
gi|8 : AAAGTACTCAA-GTACTGGTGATCGGTGCGTGTTTTTTTGGGGAAATATTTCTTGAAGGTTCACGAAAAAAGTATAATAAGGAAGAGTGTTTTTAATTTTT-CC--CTTTTTGACCCAATAATTGA-ATGTTTTTC-CAGAATACAGCAAC-AA-CAAATGGTTAAACAATTTGTTTT-CTAAGCTCAAATACTC-TTTT-TGT-CTAACAACTTCAGT--------------A--ATTTCAGATTGAGATATCTCCACT-ACAGTGAAAG-TTTTATCACAATGCATTTAAATATCAGTTTCTCTGGCGACTC-AAAA---ATTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGT---AGATTTTTga
gi|9 : tcAAAGTACTTATAGTACTGGTGGCCGGTGCATGTTTTTATAGGAAAATATTTATTGAAGGTTCAAGAAGAAAGGATAATAAGGAAGAGTGTTTTTA-TTTTTTCCATTTTTTTTACCAAATTATTGA-ATTTATTTCTCACAATACAGCAAC-AA-CAAATGGTTGAACAATTTGTTTA-CTAGGCACAAACACTC-TTTT-TGT-CTAACACTTTCAGATTA-CAGTAATGTCATAATTTCATATTGTTATATCTCTACT-ACAGTGAAAG-TTGTGTCACAATGCAT------------------------TC-AAAA---ACTGACCACAGAGGACA-----TATCATGAG-ATGATGCTACACCCCAACTATCTTGACCATGTACTGTCGTCGATGATTTTT