lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 22 4444444444444444444444444444444444444444444444444444444444444444444 1 4 99999 1 1 333333 1 1111 1 1 11 2222222 5555555555555555555555 111 222222 33333 11 111 22 1 222 1 9999999 1 11 1 1
lowQualScore : 6 11 5555555555555555555555555555555555555555555555555555555555555555555 6 7 6 0 11111 5 5 666666 8 5 4 2222 7 5 55 4 11 4 3333333 9999999999999999999999 5 7777 0 000 0 222222 1 0 5 6 88888 2 00 111 11 5 6 6 111 5 5555555 3 5 6 3 77 6 7 5 6
lowQualScore : . .. ................................................................... . . . . ..... . . ...... . . . .... . . .. . .. . ....... ...................... . .... . ... . ...... . . . . ..... . .. ... .. . . . ... . ....... . . . . .. . . . .
lowQualScore : 0 00 0000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 00000 0 0 000000 3 9 5 1111 5 0 55 0 44 3 6666666 6666666666666666666666 7 1111 7 000 1 000000 7 1 7 0 00000 2 88 666 00 0 0 0 000 0 5555555 0 0 0 0 55 0 0 0 0
consensus : TAGATATCTAAAAATTTAGAAATAAGCAGCTTCATCAATACAGT---TAACATATACTAT---TACAA------------TAACACATATACTATGT-CATTCTATAAGAATTGTAAGAGACAACCAAATCAATTATATCACATTGTCAATATCACTGTTACAGAGTA---AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTA---TG--CCCC-A-------------------AGT-TGGTTATATATCACAGTCTAA---AAGAGNAC---TAAAACAA-TGATCTAAN---NAAAAAACAAAGTATGAAAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATACTTAAAAAAAGACAANGTNTATCACCACAGATCAGNTTTGCTNTGACCTGATTAACAACGACCCCTAAA
Reference ( gi|1 ) : TAGACATACAAAA-----GACATAGGCAA-TACA--AACACAATCACTACCATAGACTAGACATACAANNNNNNNNNNATTAATACATAAACCATGTACATTCTATG----TTTTAAGCGACTTCTACATCAATAATATCACATTGTCAAGATCTCTGTTACAGAGTG---AAACAACATTTACCAACTG--AGTAACAATCAGGCAGTTGCTGTTAATCTTGACTCTGTTA---TA--CCCA-A-------------------AGT-TGGTTATACATCACAGTCTAA---AAGAGAAT---TAAAACAA-TGATCTAAG---GAAGAAACAAAGTATGGAAAACAGTTCCATGGTGTAATTATAAACGCATTACGAAATACTTCAAAAA------CATTTATAACCACAAGTCAGATTTGTCATGACCTAATAAACAACGACCGCTGAAATTTAT
gi|2 : TAGATATCTAAAAATTTAGAAATAAGCAGCTTCATCAATACAGT---TAACATATACTAT---TACAA------------TAACACATATACTATGT-CATTCTATAAGAATTGTAAGAGACAACCAAATCAATAATATCA-AT-GACAATATCACT-TTACAGAGTA---AAACAATATTTACAAACTG--GGTAAGAATCGGGCTGTCGCTAATCTTCTTGACTCTGTTT---TAC-CCCA-A-------------------ATC-TGGTTATATA--ACAGTCTAA---AAGATTTC---TTAATTAA-TAATCTAAT----------TAAAGTA-AGAAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATATTTAAAAAAAG----AGTGTATCACCACAGATCAGCTTTGTTTTGACCTGATTAACAACGACCCCTAAA
gi|10 : ttCAATTTTATCACATTGTCAATATCACTGTTACAGAGTA---AAATATTATTTACAAACCA--AGTAAAAATTGAGCAATCGCTGTTAATCTTGACt
gi|4 : AATTACATTACATGGTCAATATCACTGTTACAGAGTA---AAACAATACTTACAAACTG--AGTAATGATTGGACAGTTGCTGTAACCCTTCACCCTGTTA---TGTTCTCA-AGCNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNACACAGTACAC---AAGAGAAC---T-AAACAATTGATCGAAC---TAAAAACCAAAGGATGAAAAAAAG
gi|7 : atcaaATATCGCATTGTCAAGATCACTGTTACAGAGTA---AAACAATATTTGCAAACGG--AGTAAGAATTTGACAGTCGCTGTTAATATTGACCCTGCTG---CG--CCCC-A-------------------AGT-TAGTTATATAT--CAGTCTAA---AGGAGCAC---AAAGGTAA-TGATCT-AGTT-AAAAAAACAAAGTGTGAAAAACAG
gi|6 : tATAGCACATTATCAATATCACTATTACAGAGTTTACAAACAATATTTACAAACTG--AGTAGGAATTGGGCAGTCGATGTTAATCTAGACTCTGTTA---AG--CCCC-C-------------------ATTATTTTTATATATCACAGTCTGA---A--AGAATTC-TAAAGTAA-TGATCTGAT---TAAAAAAAAGAGTAT--AAAAC
gi|14 : ttATATCTCATTGTCAAGATCACTGTTACAGAGTA---AAACAATATTTACg
gi|17 : tATTTCACATTGTCAAGATCAGTGTTACAGAGTA---AAACAAaa
gi|13 : ttACCACATTGTCAATATCACTGTTACAGAGTA---AACCAATATTTACt
gi|12 : ttagATTGTCAATATCTCTGTCACGTAGTA---AAAC-------------TG--AGTAAGAACTGGGCAGTCGATGTTAATCTa
gi|9 : TGCCAAGATCACTGTTACAGAGTA---AAACAATATTTACAAACTG--AATAAGAATTGGGCAGTCGCTGTTAATCTTAACTCTGTTATATTA--CCT----------------------AGT-TGGTTATATATCACAGTATAA---AAGAGTAC---TAAAATAA-TGAT
gi|8 : GTCAATATCGCTAGTACAGAGTA---AAACAAAATTTACAAGTTACAATTAAGAATTGGGTGGTCGCTGTTAATCTTGACTTTGTTA---TAC-CCCC-A-------------------AGC-TAGTTATAT-TCATATTCCAATATAATACAACACATATAAC-A-TAGTCTAAA---AGAGTACTAAAATAt
gi|5 : CTGTTACGTAGTA---AAACAATATTTACAAATTG--AGTAAGAATTGGGCAGTCGCTGTTTATCTTGACTCTGTTA---TA--CCCCTA-------------------AGT-TGGTTACATATCACAGCATAA---AAGTGTAC---TAAAACGA-TGATCTTAGTAAGAAGAAA-AAAATAT
gi|16 : atttttcaagattatatatatatatatatattgTTACAGAGTA---AAACAATATTTACAAACGG--AGTAAca
gi|11 : ATACTTAAAAAAAAACAATATTTATCATCACAAATCAGATTTGCTGTGACCTGATTAATAACGgtattatgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): CGTTATAAATATCTAAACTATTATGACAAATAACGCTGGTATCAAGTACAGTTTTATTAGAATTGCATTATAATAAGTATATATTTTACATGTATATATGACATTTACGGAAAGTAATAGCAATGTAAGAGGGTGTTAAAGCAAGGATATCACAGTGTCTATATCATAAACAATGTTTGCAATCTGGGTAAGAATGGGGCAACCGCTCTTTATATTGAGTAGTTTATACTCCAATGGTGGAAGATCTAAAAAGGTTTTCAATGAAAGAAGGAAAGACAGTGCAAATATGC
Unaligned ( gi|15 ): AAATCTGATTTGCTGTAACAACACTCTCTCAGATGCAATAAAAA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 4444444 1 222 1 444444444 222 00000000000000000000000000 1 1 666666666666666 11 44444444444444444444 111111 333333333
lowQualScore : 4444444 3 222 7 3 777777777 4 7 7 333 00000000000000000000000000 3 3 6 000000000000000 33 0 3 33 2 44 99 4 4 0 8 00000000000000000000 1 00 5 5 777777 777 1 2 3 2 2 666666666 1 0 1 0 1 3
lowQualScore : ....... . ... . . ......... . . . ... .......................... . . . ............... .. . . .. . .. .. . . . . .................... . .. . . ...... ... . . . . . ......... . . . . . .
lowQualScore : 3333333 3 000 3 3 777777777 0 3 3 333 33333333333333333333333333 3 3 7 777777777777777 00 7 1 77 7 66 66 4 4 1 9 66666666666666666666 0 88 0 0 333333 000 7 5 0 5 5 000000000 0 7 0 7 0 7
consensus : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG-T-CATCAA-TACAGT---T-----ANCATATACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAA-TTA--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACA--GTTTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
Reference ( family-404 ) : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAGCTTCATCAA-TACAGT---T-----AACATATACTAT---TACAA------------TAA----------CACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACAACCAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATG-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGNACTAAAACA-A-TGATCTAA-NNA--AAAAACAAAGTATGAAAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATACTTAAAAAAAGACAANGTNTATCACCACAGATCAGNTTTGCTNTGACCTGATTAACAACGACCCCTAAA
gi|1 : TAGACATACAAAA--------GACATAG-GCAA-TACA--AA-CACAATCACT-----ACCATAGACTAGACATACAANNNNNNNNNNATTAA----------TACATAAAC-CATGTACATTCTAT---G-----T-----TTTAAGCGACTTCTACATCAATAATATCACAT-TGTCAAGATCTCTGTTACAGAGT--G-AAACAACATTTACCAACTG--AGTAACAATCAGGCAGTTGCTGTTAATCTTGACTCTGTTATA-CC-CA-AAGT-TGGTTATACAT--------------------CACAGTCTAAAAGAGAATTAAAACA-A-TGATCTAA-GGA--AGAAACAAAGTATGGAAAACAGTTCCATGGTGTAATTATAAACGCATTACGAAATACTTCAAAA---ACA---TTTATAACCACAAGTCAGATTTGTCATGACCTAATAAACAACGACCGCTGAA
gi|10 : CAATTTTATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAATATTATTTACAAACCA--AGTAAAAATTGAGCAATCGCTGTTAATCTTGACatttat
gi|11 : ATACTTAAAAAAAAACAATATTTATCATCACAAATCAGATTTGCTGTGACCTGATTAATAACGCTCTCT
gi|12 : gtAT-TGTCAATATCTCTGTCACGTAGT--A-AAAC-------------TG--AGTAAGAACTGGGCAGTCGATGTTAATCTcagatgcaatacaaa
gi|13 : TTAGACCACAT-TGTCAATATCACTGTTACAGAGT--A-AACCAATATTTACA
gi|14 : TATATCTCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAA
gi|16 : TTACAGAGT--A-AAACAATATTTACAAACGG--AGTAAGTATT
gi|17 : TTATTTCACAT-TGTCAAGATCAGTGTTACAGAGT--A-AAACAATatgt
gi|2 : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAGCTTCATCAA-TACAGT---T-----AACATATACTAT---TACAA------------TAA----------CACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACAACCAAATCAATAATATCA-A--TGACAATATCACT-TTACAGAGT--A-AAACAATATTTACAAACTG--GGTAAGAATCGGGCTGTCGCTAATCTTCTTGACTCTGTTTTA-CC-CC-AAATCTGGTTATATA----------------------ACAGTCTAAAAGATTTCTTAATTA-A-TAATCTAA-TT---------AAAGTAAG-AAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATATTTAAAAAAAGA----GTGTATCACCACAGATCAGCTTTGTTTTGACCTGATTAACAACGACCCCTAAA
gi|3 : ttTAAATATCTAAACTATTATGACAAATAACGCTGGT--ATCAAGTACAGT---TTTATTAGAAT-TGC-AT---TATAA------------TAAGTATATATTTTACATGTATATATGA-CATT-TACGGAAAGTAATAGCAATGTAAGAGGGTGTTAAAGCAAGGATATCACAG-TGTCTATATCAT---------------AAACAATGTTTGCAATCTG--GGTAAGAATGGGGCAACCGCTCTTTATATTGAGTAGTTTATA-CT-CC-AA---TGGTt
gi|4 : cgttaAATTACATTACAT-GGTCAATATCACTGTTACAGAGT--A-AAACAATACTTACAAACTG--AGTAATGATTGGACAGTTGCTGTAACCCTTCACCCTGTTATGTTC-TC-AAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAGTACACAAGAGAACT-AAACA-ATTGATCGAA-CTA--AAAACCAAAGGATGAAAAAAAGggaagatctaaaaaggttttcaatgaaagaaggaaagacagtgcaaatatgc
gi|5 : atcaaATTATAT-ATATATATATATATTGCTGTTACGTAGT--A-AAACAATATTTACAAATTG--AGTAAGAATTGGGCAGTCGCTGTTTATCTTGACTCTGTTATA-CC-CCTAAGT-TGGTTACATAT--------------------CACAGCATAAAAGTGTACTAAAACG-A-TGATCTTA-GTAAGAAGAAAAAAATAT
gi|6 : atttttcaagTTATAGCACAT-TATCAATATCACTATTACAGAGTTTACAAACAATATTTACAAACTG--AGTAGGAATTGGGCAGTCGATGTTAATCTAGACTCTGTTAAG-CC-CC-CATTATTTTTATATAT--------------------CACAGTCTGAAAGAATTCTAAAGTA-A-TGATCTGA-TTA--AAAAAAAGAGTATAAAAca
gi|7 : TATATCGCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTGCAAACGG--AGTAAGAATTTGACAGTCGCTGTTAATATTGACCCTGCTGCG-CC-CC-AAGT-TAGTTATATAT----------------------CAGTCTAAAGGAGCACAAAGGTA-A-TGATCTAGTTAA--AAAAACAAAGTGTGAAAAACAGcg
gi|8 : GTCAATATCGCTAGTACAGAGT--A-AAACAAAATTTACAAGTTACAATTAAGAATTGGGTGGTCGCTGTTAATCTTGACTTTGTTATACCC-CC-AAGC-TAGTTATAT-T--------------------CATATTCCAATATAATAC-AACACATA-TAACATAG-TCT--AAA---AGAGTACTAAAA
gi|9 : -TGCCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AATAAGAATTGGGCAGTCGCTGTTAATCTTAACTCTGTTATA-TTACC-TAGT-TGGTTATATAT--------------------CACAGTATAAAAGAGTACTAAAATA-A-TGATta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATCTGATTTGCTGTAACAACACTCTCTCAGATGCAATAAAAA
Alignments
lowQualScore : 4444444 1 3333 1 333333 22222222222 9999999999999999999999999 1 1 666666666666666 44444444444444444444 111111 2222222222
lowQualScore : 4444444 3 0000 7 3 222222 1 44444444444 9999999999999999999999999 3 3 6 000000000000000 1 3 33 2 44 8 4 4 0 8 00000000000000000000 00 5 5 111111 7777 1 1 1 1 1 8888888888 44 1
lowQualScore : ....... . .... . . ...... . ........... ......................... . . . ............... . . .. . .. . . . . . .................... .. . . ...... .... . . . . . .......... .. .
lowQualScore : 3333333 3 7777 3 3 777777 0 00000000000 7777777777777777777777777 3 3 7 777777777777777 0 1 77 7 66 9 4 4 1 9 66666666666666666666 88 0 0 777777 0000 7 0 0 0 0 0000000000 33 0
consensus : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
Reference ( family-404 ) : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
gi|1 : TAGACATACAAAA--------GACATAG-GCAA--TACA--AA-CACAATCACT--ACCATA--GACTAGACATACAANNNNNNNNNNATTAA----------TACATAAAC-CATGTACATTCTAT---G-----T-----TTTAAGCGACTTCTACATCAATAATATCACAT-TGTCAAGATCTCTGTTACAGAGT--G-AAACAACATTTACCAACTG--AGTAACAATCAGGCAGTTGCTGTTAATCTTGACTCTGTTATA-CC-CA-AAGT-TGGTTATACAT--------------------CACAGTCTAAAAGAGAATTAAAACA-A-TGATCTAAG-G-A--AGAAACAAAGTATGGAAAACAGTTCCATGGTGTAATTATAAACGCATTACGAAATACTTCAAAA---ACA-T--TTATAACCACAAGTCAGATTTGTCATGACCTAATAAACAACGACCGCTGAA
gi|10 : CAATTTTATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAATATTATTTACAAACCA--AGTAAAAATTGAGCAATCGCTGTTAATCTTGACatttat
gi|11 : ATACTTAAAAAAAAACAATATTTATCATCACAAATCAGATTTGCTGTGACCTGATTAATAACGCTCTCT
gi|12 : gtAT-TGTCAATATCTCTGTCACGTAGT--A-AAAC-------------TG--AGTAAGAACTGGGCAGTCGATGTTAATCTcagatgcaatacaaa
gi|13 : TTAGACCACAT-TGTCAATATCACTGTTACAGAGT--A-AACCAATATTTACA
gi|14 : TATATCTCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAA
gi|16 : TTACAGAGT--A-AAACAATATTTACAAACGG--AGTAAGTATT
gi|17 : TTATTTCACAT-TGTCAAGATCAGTGTTACAGAGT--A-AAACAATatgt
gi|2 : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAGCTT-CATCAA-TACAGT---T--AACATA--TACTAT---TACAA------------TAA----------CACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACAACCAAATCAATAATATCA-A--TGACAATATCACT-TTACAGAGT--A-AAACAATATTTACAAACTG--GGTAAGAATCGGGCTGTCGCTAATCTTCTTGACTCTGTTTTA-CC-CC-AAATCTGGTTATATA----------------------ACAGTCTAAAAGATTTCTTAATTA-A-TAATCTAAT-T----------AAAGTAAG-AAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATATTTAAAAAAAG--AGT--GTATCACCACAGATCAGCTTTGTTTTGACCTGATTAACAACGACCCCTAAA
gi|3 : ttTAAATATCTAAACTATTATGACAAATAACGCTG--G-TATCAAGTACAGT---TTTATTAGAATTGC-AT---TATAA------------TAAGTATATATTTTACATGTATATATGA-CATT-TACGGAAAGTAATAGCAATGTAAGAGGGTGTTAAAGCAAGGATATCACAG-TGTCTATATCAT---------------AAACAATGTTTGCAATCTG--GGTAAGAATGGGGCAACCGCTCTTTATATTGAGTAGTTTATA-CT-CC-AA---TGGTt
gi|4 : cgttaAATTACATTACAT-GGTCAATATCACTGTTACAGAGT--A-AAACAATACTTACAAACTG--AGTAATGATTGGACAGTTGCTGTAACCCTTCACCCTGTTATGTTC-TC-AAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAGTACACAAGAGAACT-AAACA-ATTGATCGAAC-T-A--AAAACCAAAGGATGAAAAAAAGggaagatctaaaaaggttttcaatgaaagaaggaaagacagtgcaaatatgc
gi|5 : atcaaATTATAT-ATATATATATATATTGCTGTTACGTAGT--A-AAACAATATTTACAAATTG--AGTAAGAATTGGGCAGTCGCTGTTTATCTTGACTCTGTTATA-CC-CCTAAGT-TGGTTACATAT--------------------CACAGCATAAAAGTGTACTAAAACG-A-TGATCTTAG-T-AAGAAGAAAAAAATAT
gi|6 : atttttcaagTTATAGCACAT-TATCAATATCACTATTACAGAGTTTACAAACAATATTTACAAACTG--AGTAGGAATTGGGCAGTCGATGTTAATCTAGACTCTGTTAAG-CC-CC-CATTATTTTTATATAT--------------------CACAGTCTGAAAGAATTCTAAAGTA-A-TGATCTGAT-T-A--AAAAAAAGAGTATAAAAca
gi|7 : TATATCGCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTGCAAACGG--AGTAAGAATTTGACAGTCGCTGTTAATATTGACCCTGCTGCG-CC-CC-AAGT-TAGTTATATAT----------------------CAGTCTAAAGGAGCACAAAGGTA-A-TGATCTAGT-TAA--AAAAACAAAGTGTGAAAAACAGcg
gi|8 : GTCAATATCGCTAGTACAGAGT--A-AAACAAAATTTACAAGTTACAATTAAGAATTGGGTGGTCGCTGTTAATCTTGACTTTGTTATACCC-CC-AAGC-TAGTTATAT-T--------------------CATATTCCAATATAATAC-AACACATA-TAACATAGTCT-A--AA----AGAGTACTAAAA
gi|9 : -TGCCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AATAAGAATTGGGCAGTCGCTGTTAATCTTAACTCTGTTATA-TTACC-TAGT-TGGTTATATAT--------------------CACAGTATAAAAGAGTACTAAAATA-A-TGATta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATCTGATTTGCTGTAACAACACTCTCTCAGATGCAATAAAAA
Alignments
lowQualScore : 4444444 1 3333 1 333333 22222222222 9999999999999999999999999 1 1 666666666666666 44444444444444444444 111111 2222222222
lowQualScore : 4444444 3 0000 7 3 222222 1 44444444444 9999999999999999999999999 3 3 6 000000000000000 1 3 33 2 44 8 4 4 0 8 00000000000000000000 00 5 5 111111 7777 1 1 1 1 1 8888888888 44 1
lowQualScore : ....... . .... . . ...... . ........... ......................... . . . ............... . . .. . .. . . . . . .................... .. . . ...... .... . . . . . .......... .. .
lowQualScore : 3333333 3 7777 3 3 777777 0 00000000000 7777777777777777777777777 3 3 7 777777777777777 0 1 77 7 66 9 4 4 1 9 66666666666666666666 88 0 0 777777 0000 7 0 0 0 0 0000000000 33 0
consensus : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
Reference ( family-404 ) : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
gi|1 : TAGACATACAAAA--------GACATAG-GCAA--TACA--AA-CACAATCACT--ACCATA--GACTAGACATACAANNNNNNNNNNATTAA----------TACATAAAC-CATGTACATTCTAT---G-----T-----TTTAAGCGACTTCTACATCAATAATATCACAT-TGTCAAGATCTCTGTTACAGAGT--G-AAACAACATTTACCAACTG--AGTAACAATCAGGCAGTTGCTGTTAATCTTGACTCTGTTATA-CC-CA-AAGT-TGGTTATACAT--------------------CACAGTCTAAAAGAGAATTAAAACA-A-TGATCTAAG-G-A--AGAAACAAAGTATGGAAAACAGTTCCATGGTGTAATTATAAACGCATTACGAAATACTTCAAAA---ACA-T--TTATAACCACAAGTCAGATTTGTCATGACCTAATAAACAACGACCGCTGAA
gi|10 : CAATTTTATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAATATTATTTACAAACCA--AGTAAAAATTGAGCAATCGCTGTTAATCTTGACatttat
gi|11 : ATACTTAAAAAAAAACAATATTTATCATCACAAATCAGATTTGCTGTGACCTGATTAATAACGCTCTCT
gi|12 : gtAT-TGTCAATATCTCTGTCACGTAGT--A-AAAC-------------TG--AGTAAGAACTGGGCAGTCGATGTTAATCTcagatgcaatacaaa
gi|13 : TTAGACCACAT-TGTCAATATCACTGTTACAGAGT--A-AACCAATATTTACA
gi|14 : TATATCTCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAA
gi|16 : TTACAGAGT--A-AAACAATATTTACAAACGG--AGTAAGTATT
gi|17 : TTATTTCACAT-TGTCAAGATCAGTGTTACAGAGT--A-AAACAATatgt
gi|2 : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAGCTT-CATCAA-TACAGT---T--AACATA--TACTAT---TACAA------------TAA----------CACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACAACCAAATCAATAATATCA-A--TGACAATATCACT-TTACAGAGT--A-AAACAATATTTACAAACTG--GGTAAGAATCGGGCTGTCGCTAATCTTCTTGACTCTGTTTTA-CC-CC-AAATCTGGTTATATA----------------------ACAGTCTAAAAGATTTCTTAATTA-A-TAATCTAAT-T----------AAAGTAAG-AAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATATTTAAAAAAAG--AGT--GTATCACCACAGATCAGCTTTGTTTTGACCTGATTAACAACGACCCCTAAA
gi|3 : ttTAAATATCTAAACTATTATGACAAATAACGCTG--G-TATCAAGTACAGT---TTTATTAGAATTGC-AT---TATAA------------TAAGTATATATTTTACATGTATATATGA-CATT-TACGGAAAGTAATAGCAATGTAAGAGGGTGTTAAAGCAAGGATATCACAG-TGTCTATATCAT---------------AAACAATGTTTGCAATCTG--GGTAAGAATGGGGCAACCGCTCTTTATATTGAGTAGTTTATA-CT-CC-AA---TGGTt
gi|4 : cgttaAATTACATTACAT-GGTCAATATCACTGTTACAGAGT--A-AAACAATACTTACAAACTG--AGTAATGATTGGACAGTTGCTGTAACCCTTCACCCTGTTATGTTC-TC-AAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAGTACACAAGAGAACT-AAACA-ATTGATCGAAC-T-A--AAAACCAAAGGATGAAAAAAAGggaagatctaaaaaggttttcaatgaaagaaggaaagacagtgcaaatatgc
gi|5 : atcaaATTATAT-ATATATATATATATTGCTGTTACGTAGT--A-AAACAATATTTACAAATTG--AGTAAGAATTGGGCAGTCGCTGTTTATCTTGACTCTGTTATA-CC-CCTAAGT-TGGTTACATAT--------------------CACAGCATAAAAGTGTACTAAAACG-A-TGATCTTAG-T-AAGAAGAAAAAAATAT
gi|6 : atttttcaagTTATAGCACAT-TATCAATATCACTATTACAGAGTTTACAAACAATATTTACAAACTG--AGTAGGAATTGGGCAGTCGATGTTAATCTAGACTCTGTTAAG-CC-CC-CATTATTTTTATATAT--------------------CACAGTCTGAAAGAATTCTAAAGTA-A-TGATCTGAT-T-A--AAAAAAAGAGTATAAAAca
gi|7 : TATATCGCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTGCAAACGG--AGTAAGAATTTGACAGTCGCTGTTAATATTGACCCTGCTGCG-CC-CC-AAGT-TAGTTATATAT----------------------CAGTCTAAAGGAGCACAAAGGTA-A-TGATCTAGT-TAA--AAAAACAAAGTGTGAAAAACAGcg
gi|8 : GTCAATATCGCTAGTACAGAGT--A-AAACAAAATTTACAAGTTACAATTAAGAATTGGGTGGTCGCTGTTAATCTTGACTTTGTTATACCC-CC-AAGC-TAGTTATAT-T--------------------CATATTCCAATATAATAC-AACACATA-TAACATAGTCT-A--AA----AGAGTACTAAAA
gi|9 : -TGCCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AATAAGAATTGGGCAGTCGCTGTTAATCTTAACTCTGTTATA-TTACC-TAGT-TGGTTATATAT--------------------CACAGTATAAAAGAGTACTAAAATA-A-TGATta
blockSeqs : TATTATG C CTT T G TTT A ATTGCAT TAAGTATATATTT A . C GGAAAGTAATAGCAA A A TT C CA T A T C NNNNNNNNNNNNNNNNNNNA T T TAAG AACC A G T C G AAAACAATAT TG T
blockSeqs : ATTT . G T . T T TACTAT TAA . . . AAGAAT G . . . . C . . A . . . TAA GAAA A AAGAGT TT C
blockSeqs : . . . . . . . . . . . CTA AAAA A
blockSeqs : . . . . . . . . . . . TA AAAC A
blockSeqs : . . . . . . . . . . . TA . .
blockSeqs : . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
finalCons : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATCTGATTTGCTGTAACAACACTCTCTCAGATGCAATAAAAA
Alignments
lowQualScore : 4444444 1 3333 1 333333 22222222222 9999999999999999999999999 1 1 666666666666666 44444444444444444444 111111 2222222222
lowQualScore : 4444444 3 0000 7 3 222222 1 44444444444 9999999999999999999999999 3 3 6 000000000000000 1 3 33 2 44 8 4 4 0 8 00000000000000000000 00 5 5 111111 7777 1 1 1 1 1 8888888888 44 1
lowQualScore : ....... . .... . . ...... . ........... ......................... . . . ............... . . .. . .. . . . . . .................... .. . . ...... .... . . . . . .......... .. .
lowQualScore : 3333333 3 7777 3 3 777777 0 00000000000 7777777777777777777777777 3 3 7 777777777777777 0 1 77 7 66 9 4 4 1 9 66666666666666666666 88 0 0 777777 0000 7 0 0 0 0 0000000000 33 0
consensus : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
Reference ( family-404 ) : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAG--T-CATCAA-TACAGT---T--ANCATA--TACTAT---TACAA------------TAA----------TACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACTNCTAAATCAATTATATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AGTAAGAATTGGGCAGTCGCTGTTAATCTTGACTCTGTTATA-CC-CC-AAGT-TGGTTATATAT--------------------CACAGTCTAAAAGAGTACTAAAACA-A-TGATCTAAT-T-A--AAAAACAAAGTATGAAAAACAGTNCCATNGTGCAATTACANANGCATTACGAAATACTTAAAAAAAGACAGT--TTATCACCACAAATCAGATTTGTCGTGACCTGATTAACAACGACCNCTGAA
gi|1 : TAGACATACAAAA--------GACATAG-GCAA--TACA--AA-CACAATCACT--ACCATA--GACTAGACATACAANNNNNNNNNNATTAA----------TACATAAAC-CATGTACATTCTAT---G-----T-----TTTAAGCGACTTCTACATCAATAATATCACAT-TGTCAAGATCTCTGTTACAGAGT--G-AAACAACATTTACCAACTG--AGTAACAATCAGGCAGTTGCTGTTAATCTTGACTCTGTTATA-CC-CA-AAGT-TGGTTATACAT--------------------CACAGTCTAAAAGAGAATTAAAACA-A-TGATCTAAG-G-A--AGAAACAAAGTATGGAAAACAGTTCCATGGTGTAATTATAAACGCATTACGAAATACTTCAAAA---ACA-T--TTATAACCACAAGTCAGATTTGTCATGACCTAATAAACAACGACCGCTGAA
gi|10 : CAATTTTATCACAT-TGTCAATATCACTGTTACAGAGT--A-AAATATTATTTACAAACCA--AGTAAAAATTGAGCAATCGCTGTTAATCTTGACatttat
gi|11 : ATACTTAAAAAAAAACAATATTTATCATCACAAATCAGATTTGCTGTGACCTGATTAATAACGCTCTCT
gi|12 : gtAT-TGTCAATATCTCTGTCACGTAGT--A-AAAC-------------TG--AGTAAGAACTGGGCAGTCGATGTTAATCTcagatgcaatacaaa
gi|13 : TTAGACCACAT-TGTCAATATCACTGTTACAGAGT--A-AACCAATATTTACA
gi|14 : TATATCTCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAA
gi|16 : TTACAGAGT--A-AAACAATATTTACAAACGG--AGTAAGTATT
gi|17 : TTATTTCACAT-TGTCAAGATCAGTGTTACAGAGT--A-AAACAATatgt
gi|2 : TAGATATCTAAAA-ATT-T-AGAAATAA-GCAGCTT-CATCAA-TACAGT---T--AACATA--TACTAT---TACAA------------TAA----------CACATATAC-TATGT-CATTCTAT---AAG-AAT-----TGTAAGAGACAACCAAATCAATAATATCA-A--TGACAATATCACT-TTACAGAGT--A-AAACAATATTTACAAACTG--GGTAAGAATCGGGCTGTCGCTAATCTTCTTGACTCTGTTTTA-CC-CC-AAATCTGGTTATATA----------------------ACAGTCTAAAAGATTTCTTAATTA-A-TAATCTAAT-T----------AAAGTAAG-AAAACAGTGTCATTGTGCAATTACACAGGCATTACGAAATATTTAAAAAAAG--AGT--GTATCACCACAGATCAGCTTTGTTTTGACCTGATTAACAACGACCCCTAAA
gi|3 : ttTAAATATCTAAACTATTATGACAAATAACGCTG--G-TATCAAGTACAGT---TTTATTAGAATTGC-AT---TATAA------------TAAGTATATATTTTACATGTATATATGA-CATT-TACGGAAAGTAATAGCAATGTAAGAGGGTGTTAAAGCAAGGATATCACAG-TGTCTATATCAT---------------AAACAATGTTTGCAATCTG--GGTAAGAATGGGGCAACCGCTCTTTATATTGAGTAGTTTATA-CT-CC-AA---TGGTt
gi|4 : cgttaAATTACATTACAT-GGTCAATATCACTGTTACAGAGT--A-AAACAATACTTACAAACTG--AGTAATGATTGGACAGTTGCTGTAACCCTTCACCCTGTTATGTTC-TC-AAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAGTACACAAGAGAACT-AAACA-ATTGATCGAAC-T-A--AAAACCAAAGGATGAAAAAAAGggaagatctaaaaaggttttcaatgaaagaaggaaagacagtgcaaatatgc
gi|5 : atcaaATTATAT-ATATATATATATATTGCTGTTACGTAGT--A-AAACAATATTTACAAATTG--AGTAAGAATTGGGCAGTCGCTGTTTATCTTGACTCTGTTATA-CC-CCTAAGT-TGGTTACATAT--------------------CACAGCATAAAAGTGTACTAAAACG-A-TGATCTTAG-T-AAGAAGAAAAAAATAT
gi|6 : atttttcaagTTATAGCACAT-TATCAATATCACTATTACAGAGTTTACAAACAATATTTACAAACTG--AGTAGGAATTGGGCAGTCGATGTTAATCTAGACTCTGTTAAG-CC-CC-CATTATTTTTATATAT--------------------CACAGTCTGAAAGAATTCTAAAGTA-A-TGATCTGAT-T-A--AAAAAAAGAGTATAAAAca
gi|7 : TATATCGCAT-TGTCAAGATCACTGTTACAGAGT--A-AAACAATATTTGCAAACGG--AGTAAGAATTTGACAGTCGCTGTTAATATTGACCCTGCTGCG-CC-CC-AAGT-TAGTTATATAT----------------------CAGTCTAAAGGAGCACAAAGGTA-A-TGATCTAGT-TAA--AAAAACAAAGTGTGAAAAACAGcg
gi|8 : GTCAATATCGCTAGTACAGAGT--A-AAACAAAATTTACAAGTTACAATTAAGAATTGGGTGGTCGCTGTTAATCTTGACTTTGTTATACCC-CC-AAGC-TAGTTATAT-T--------------------CATATTCCAATATAATAC-AACACATA-TAACATAGTCT-A--AA----AGAGTACTAAAA
gi|9 : -TGCCAAGATCACTGTTACAGAGT--A-AAACAATATTTACAAACTG--AATAAGAATTGGGCAGTCGCTGTTAATCTTAACTCTGTTATA-TTACC-TAGT-TGGTTATATAT--------------------CACAGTATAAAAGAGTACTAAAATA-A-TGATta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATCTGATTTGCTGTAACAACACTCTCTCAGATGCAATAAAAA