lowQualScore : 11 2222222222222222 1 1 2222 11111 111 1 2222222 4444444444444444 11111 11 22 11111 5555555555555555555555555 11 222 1 5555555
lowQualScore : 2 22 2222222222222222 3 5 6 555 5 5 5 7777 4 3 9999 55555 7777 3 5 8 44 444 0 5 1 2222222 0 7777777777777777 2 00000 3 2 2 2 2 2 22 2 33 77777 4 5555555555555555555555555 4 88 77 1 6 6 2 000 6 7 3 1111111 6
lowQualScore : . .. ................ . . . ... . . . .... . . .... ..... .... . . . .. ... . . . ....... . ................ . ..... . . . . . . .. . .. ..... . ......................... . .. .. . . . . ... . . . ....... .
lowQualScore : 8 11 1111111111111111 3 0 2 888 2 9 4 1111 2 3 8888 99999 1111 3 1 4 22 555 9 0 6 4444444 5 3333333333333333 7 55555 3 3 7 7 7 7 00 7 88 11111 8 6666666666666666666666666 8 11 99 1 0 0 7 555 0 3 0 2222222 0
consensus : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCTGTGATNTACTCAC---ATCCAATGATCTAAATTTCATCAATTACAC----AAGTGACCAAAACCATGTACATGATTATGAAAATAGTATACG-GA--AGAAA--C--CAGCAGCTT----TT-GTCATTCGTGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGT-A-----ATGTGTGTTCAACTTGTTATT--TATTCGTGTTTGAG-AAAAG----GTATCAAACATCACACAATCCTTGAAGTGGTGA-CT-T-TTT-TCTATTT-TTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCT-CATTT-------------------ATTTTACCTAGATCAAGCTA-GCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACGTTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTG-ACGC-CTTGCAT
Reference ( gi|1 ) : AAGTGAAAGTTCACATGCAACAATGAATATGACGACCGATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCTGTGATTTATTCAC---ATCTAATGATCTAAATATCATCAATTGCAC----AAGTGACCAAAACCATGTACATGATTATCAAAATAGTATACG-GA--GCAAA--C--CAGCAGCTT----TT-GTCATTCATGCGAACGGTTT--TTATATCCAAACCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATGTGGCTTTGGAAATGCCTTGT-T-----ATGTGTGTTCACCTTGTTATT--TATTCGTGTTTGAG-AAAAT----GTATCAAACATCACACAATCCTTGAAGTGGTGA-TT-T-TTT-TCGATTT-TTTTAACTCTGGTAAAACAATAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTCCCTACATCT-AATCG-------------------ATTTTACCCAGATCAAGCTA-ACTCTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTTTGTTGGTACATATTTAT-AAAATA--TACATACAAAGCAAACTCATTATTGTTTCTTCAAATCAAACTTGCGGCGCCATTGCACACGTTTGTATTGTACTGTT
gi|2 : AAGGGAAAGTTCACATGCAACAATGAATATAACGACCAATGAAACC----------------ATTTTCTGTGT-TGGTTTAGTCTGTGATGTACTCAC---ATCCAATGATCTAAATTTCATCATTTACAC----AAGTGAACAAAACCATGTACATGATTATGAAAATAGTATACG-GG----AAACCC--CAGCAGCTT----TT-ATCATTCATGCGAACGGTTT--TTATATCCAGATCTCGTTTAAGTTCTCTGTTCGACAAATATTTTTGTTATAAATTTGGCTTAGGAAATGCTTTTT-A-----ATGTGCGTTCAACTTGT--------TTCGTGTTTGAG-AAAAG----GTGT----CATAACACAATCTTTGAAATGGTGA-CT-T-AAT-TCTATTG-TTTT-ACTCTGATAAATCG--AGAACTCGTTTATCTTTCTATTATATATTTATGGTTTTCCTACATCT-CATT------------------------------GATCAAACTAGACT-TACATGTTCAAAATGATTGTTTTGTCTCTTCATAACGTTTTGCACTAAACGGTCATTCTCTGTTGGTACACACTCAT-AAAATA--AACATACAAAGCAAACTCAATGTTGTTTCTTTAAAACAAACTTACGGCGCCATTG
gi|5 : aagtagaaagaatgtaaacAAGTAAAAGTTCACATGCAACAATAAATATGATGATTTATGAAAAC----------------ATTTTCGATGT-TGTTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTGCAC----AAGTGACCAAAACCATGTACATGATTATGAAAATAGTATACG-GA--AGAAAC-C--CAGCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATGTGCAGATAAGGTTAAAGTTCTCTGTTCGAAAAATATTTCTGTAAAAGATTTGGCTTCGGAAATGCCTTGTATATATAATGTGTTTTCAACTTGTTATCTGTATT--TGACTGAG-AAAAG----GTGT----CGTAACACAATCCTTGAAGTGGTGA-CT-T-AAT-TCTATTTCTCTT--CTCTGATAAATCGACAAAACTCGTTTATCTTTCGATTTTATATTTTTGGCATTCCTACATGT-CATTT-------------------ATTTTACCCAGATCAAGCTA-GCCTTATATGTTCAACATGATTGTTTTGTCTCTTAATAATATTTTACACAAAACGGTCATTCTCTGTTGGTAGATATTCAT-AAAATA---A---ACAAAGCAAACTAATatgccttgcaccaatctttgtcttg
gi|8 : agtagaaaaaaggttaccAATTGAAAGTTCACATGCAGAAATGAATATGACGACTAATACAACC----------------ATTTTCGGTGT-TGGCTTAGTCAGTGAGTTACTCAC---ATCCAAAGATATAAATTTCATCAATTACAC----AAGTGACTAAAACCATGTACATGATTATCAAAATAGTATACGAAA--GAAAA--T--CAGCAGCTT----TT-GACATTCATGCGAGCGGTAA--TTATATCCAGATCAGGTTAACGTTCTCCTTTCGACAAATATTTCTGTAATAAATCTGGCTTTGGAAATGCCTTGT-A-----ATGTGTGTTCAACATG----T--TATTCGTGTTTGAG-AAAAG----GTATCAAACATCATACAATCCTTGAAGTGGTGA-CT-TGTTC-TAGGTTT-AT---ACACTGGT-AAACAACAGAACTCGTTTATCTTTCTATTTTATATTTTTG---TCCT----TCT-------------------------ATTTTACCTAGATCAAGCCA-GCCTTATATGTTTAAAATGATTGTTTTGTCTCTTTATAACAGTTTACACTGAACGGTCATTCTCT
gi|3 : aagtagaaagaatgtaaacAAGTGAAAGTTCACATGCAATAATAAATATGATGACTAATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCT--------------------AATGATCTAA-TGTCATCAATTACAC----AAGTGAC-AAAACCATGTCCATGATTAATAAAATAGTATACG-GAA-GAAAA--C--AAGCAGTTT----TTTGTTATTCATTTTACCCGTTT--TTATATCCAGATCAGGTTAAAGTT-TCCATTCGACAAATATTTCTGTAATAAATTTGGCT--------------------------GTGTTTAACTTGTT-----T-TTCGTGTTTGAG-AAAGC-----TATCAAACATTACACAATCCTTAAAGTGGTGA-TT-T-TTC-TTTTTTT-TTTTA-CTCTGGTAACTCGGCAGAACTCGTTTATTTTTCGATTTTATATTTTTTAATTTCCTACATCT-CTTTT-------------------ATTTTACCAAGATCAAGCTA-GCCTTACATGTTAAAAA-AATAGCTTTGTCTTTTGATAACATTGTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAAAAACAACATACAAAACAAATTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCTACTG-ACGC-CTTGCAT
gi|7 : aagtagaaataatgtaaacAAGCGAAAGTTCACATGCAACAATGA-CATCATGACTAATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCTGTG------TCAC---ATCCGATGATCTAAATTTCATCAATTACAC----AAGTAACCAAAACCA---------------AAATAA-------AA--GAAAT--C--CAGCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATAGCCAGATCAAGTTAAAGCTCTGAGTTCGACAAATATTTCAGCAATAAATTTGGCTTTGGAAATGCCTTGT------------------------------TATTCGTGTTTGAG-AAAAT----GTATCAAACATCACACAATCCTTGACGTGGTAA-CT-T-TTT-TCTATTT-TT---ACTCTGGTAAA----------TCGTTTATCTTCCGATTTTATTTTTTTGGCTTTCCTACATTT-CATCT-------------------ATTTGACCTAGATCATGCTA-AC-CTACATGTTCAAAATGAAT-TTTTGTCTCTTGATAAGATTTTACACT-----TTCATTCTCCGATGTTACATATTCAT-AAAATA--AACATACACAGCAAACTCATTGTTGTT-----AAAACAAACTTGCGGCAACATTGCcaatctttgccttg
gi|11 : AAGTGAAAGTTCACATGCAACAATGAATATGATAACCAATGAAACC----------------ATTTTAGATGT-TGGTTTAGTCTGTGATTTACTCAC---ATCCAATAATATAAATTTCATCAATCACACAATTAAGTGACCAAAACCATGTACATGATTAT---AATAGTTTACG-GA--AGAAAC-C--CAGCAGCTTAAAATT-GTCATTTGTGCAATCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTTAGTTCGACAAATATTTCTGTAATAAATTTGGCATCGGAAATGCCTTGT-A-----ATGTGTGTTCAACTTGTTA-T--TA---GTGTTTGAG-AAAAG----GTGC----CGTAACACAATTCTTGAAGTGGCGA-CT-T-AAT-TATATTT-TTT--ACTCCGATAAATCAATAGAACTCGTTTAACTTTCGATTTTATATATTtaccttgcatcaatctttgtcttg
gi|9 : aagtagaaagaatgtaaacAAGTGAAAATTCACGTGCGACAATGTATATGATGACTTATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCTGTAATGTACTCAC---ATCTAATGTTCTAAATTTAATCAATTACAT----AAATGACCAAAATCATTTACATGATTATGAAAATAGTATACG-GA--AGAAAC-C--CAGCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATATCCAGATCAGGCTAAAATTCTCCTTTTTACAAATATTTCTGTAATAAATTTGACTTTGGAAATTCTTTGT-A-----ATGTGTGTTCAACTTG-TA-----ATTCGTGTTAAAGTAAAGTAAAGGTATGAAACATCACACAATCCTTGACGTGATAA-TT-T-TTTAT---TTT-TTTTTACTCTGGTAAATCGACAGAACTCGTTTAT------A--------TTTTGGCTTTCCTACATCT-CAT
gi|16 : agtagatagaatgtaaacAAAGTTCACATGCAACAATGAATATGATAACTAATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCGGTGATTTACTCACTGCAACCAATGATCTAAATTTCATTAATTACAC----CAGTGACCAAAACCATGTACATGATTATGAAAATAGTATATG-GAA-GAAAA--C--CAGCAGCTT----TT-GGTATTTGTGCAACCAATTT--TTATATCCATATCCGGTTAAAGTTCTCTGTTTGACAAATATTTCTGAAATAAATTTGGCTTTAGAAATGTTTTCT-T-----TTGTGTGTTCAACTTG----T--TATTCGTGTTTGAG-AAAAT----GTATCAAACATCACTCAATCCTTAAAGTGGTGA-CTAT-TTC-TCAATTA-TTTTttacgtctcataccactattacatttttc
gi|10 : gcaTCACATACAACAATGAATATAATGACTAATAAAACCCTTTACTATTGTAACTATTTTCGA-ATACGGTTAAGTCTGTGATGTACTCAC---ATCAAATGATATAAA-------------AC----AAGACACCAAAACCATGTACATGATTATGAAAATAGCAAACG-GA--AGAAA--CT-CAACAGCTT----TT-GTCATTCATGC-AACCGTTT--TTATATCCAGTTCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCG-AAATGC-TTGT-A-----ATGTGTGTTCAACTTGTTATT------CGTGTTTGCG-ATAAG----GTATCAAACGTCAAACAATCCTTGAAGTGAC-A-TT-T-TTT----ATTT-ATTTA-CGCTGGTAAATCGACAGAATTCGTTTATCTTTCGATTTTATATTTTTGGCTTTTCTTCATCT-CATTT-------------------ATTTTACCCAGATCAAGCTA-GCCTTACATGTTCAAAATGATTGTTT
gi|4 : ATGACTATGATGACT-ATGAAACT----------------ACTTTCTATGT-TGGTTTAGTCTGTGATGTACTCAT---GTTTAGTGATCTAAATTTCATCATTTACAC----AAATGACCAAAACCATTTACATGATTGTGAAAATAGTATACA-GA--AGAAA--C--C--CAGCT-----------------GGGAGTGTTTA--TTATATCCAGATCAGGTTAAAGT-ATCCATTCCACACATATTATTGTAATAAATTTGGCTTTGGAAATTCCTTGT-G-----ATGTGTGTTCAACTTG----T--TATTCATATTTGAG-AAAAG----GTATCAAACATCACACAATCCTTGGAGTGGTGA-CT-G-TAT-CTG-TTT-TTT--ACTGTGGAAAATCGACAGGACTCGTTTATCTTTCGATTTTATATTCTTAGCTTTCCTACATCTCAATTATTTTACTTACATCTCAATTATTTTACCTGAATCAAGCTA-GC-CTACATGTTCAAAATGATTGTTTTGTCTCTTGATAAGATTTTACACTAAACGGTCATTTTCTATTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGATTCTTTAAAACAAACTTTTGAAGCCATTG
gi|6 : GACAACACC----------------ATTTCCGATGT-TGGTTTAGACTGTCATGTTTTCAC---ATCCAAAGATCTAAATTTCATCAATTACAA----AAGTGACCAAAACCATGTGCATAATTATGAAAACAGTATACG-GA--AAAAA--AAACAGCAGTTT----TT-GTCATTCGTGCAAACGGTTTATTTATATCCA-----GGTCAA-GTTCTCAGTTTGACAAATATTTACGTTATACATTTGGCTTTGGAAATACCTTGT-A-----ATGTGTGTTAAACTTGCTATT------CTTGTTTGAG-AAAAT----GTATCAAACATCACACAATCCTTGAAGTGGTGA-TT-T-TTT-CTAAATT-GTTTTACTCTGGGAAATCGACAGAGCTTGTTTATCTTTCGATTTTATATTGATGGCTTTCCTACATCT-CATTT-------------------ATTTTACCTAGATCAAGCTA-GCCTTACATGTTCAAAATGATTGATTTGTCTCTTAATAACATTTTACACTAAACGATCATTCTCATTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAT-AAACTTGCGGTGCCATTGatgccttgcatcaacctttgtct
gi|17 : ATGAAACC----------------ATTTTCGATGT-TGGTTTAGTCTGTGATTTACTCAC---ATCCATTGATCTAAATTTCATCATTTACAC----AAGTGACCAAAACCATGTTTATGATTATGAAAAAAGTATATG-GAAGAAAAA--C--CAGCAGCTT----TT-GTCATTCATGCTACCGGTTT--TTATATCCATATCAAGTT-AAGTTGTTCGTTCGGCAAATAGTTTTGTAATatgccttgcatcaatctttgt
gi|14 : aTTCATGCGATCTATTT--TTATATCCACTTCAGGTTAAA-----------------TATTTCTGTAATAAAGTTGGCTT-GGAAATGCCTTGT-T-----ATGTGTGTTTAACTTGTTATT------CGTGTTTGAG-AAAAT----GTACAAAACATCACACAATCCTTGAAATGGTGA-CT-T-TT--TCTATT----TTGATT----------GACAGAACT------------------ATATTTTTGGTTTTCCTACATCT-CATCT-------------------ACTTTACCTAGATCATGGTA-GTCAAACATGTTCAAA-TGATTGTTTTGTCCTTTAATAACGTTTTACATTAAACGGTCATTCTCTGTCGATACATATTCAT-AAAATG--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAATCAAACTTGTGGCGCCATTGt
gi|15 : GGTTAAAGCTCTCTGTTCGATAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGT-A-----A--------------------------CGTGTTTGAG-AAAAT----ATGTCA----TAACACAATCCTTAAAGTGGTAA-CT-T-AAT-TCTATTG-TTT--ACTCTGATATATCGATAGAACTCGTTTATCTTTTGATTTTACATTTTTGGCTTTCCTATATCT-TATTT-------------------ATTTTACCTAAATCAAGC----CT-TACCTGTTCAAAATGATTGTTTTGTCTCTTTATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACAAACAAAGCAAACTCATTGTTA-TTCTTTAAAACAAACTTGCatgccttgcatcaaggttg
gi|12 : tttattccatttttagAAAGTTCTCCGTTCGGAAAATATTTCATCAATAAGTTTGGCTTTGGAAATGCCTCGT-A-----ATGTGTGTTGAAAGTGTTATT------CATGTTCAGG-AAAAG----GTATCAAACATCACACAATCCTTGAAGTGGTGA-TT-G-TTT-CCTATTT-TTT--ACTCTGGTTAATCGACATATCTCGTTTATTATTCAATTATATATTTTTGGGTTTCCTACATCTCAATT--------------------ATTTTACCTAGATCAAGCCA-GCCTTACATGTTCAAAATGAGTGTTTTGTCTCTCGATAACTTTTTACACTAAACGGCAATTCTCTGTTGGTGTATATACAT-AAAATA--TACATATAAAGCAAACTCATTGTTGCTTCTTAAAAACAAACTTATGGCGCTATTGcttgcataaatctttgtcttg
gi|13 : GTTCGATAAATATTTCTGTGATAAATTTGGCTTTGGAAATGCCCTGT-A-----ACGTGT-TTAAC----TTATT---ATTCGTGTTTGAG-ATAAG----GTGTCA----TTACAAAATCCTTGAAGTGGTGACTT-T-TTT-TCTATTT-TTGT-ACTCTGGTCAATCGACAGAACTAGTTTATCTTTCGGTTTTATATTTTTGGCTTTCCTACATCT-CATTT-------------------ATTTTACCTACAGCAAGCTA-GCCTTACATGTTCAAAGTGATTGTTTTGTCTCTTGATAACGTTTTACACTAAAAGGCCATTCTCTTTTGGTACATATTCAGAAAAATA--AACATACAAAGGAAACTCAGTGTTATTTCGTTAAAACAAACTTGCGGCGCCATTG-ATAC-CTTGCATattcattgcatcaatatttttctt
gi|18 : GATCATGCTA-GCCTTATATGTTCAAAATGATT-TTTTGTCTCTTGGTAACATTTAAAACTAAACGGTTATTCTCTGTTGGTACATATTCAT-TAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACATGTGGTACCATTGcaatccttgtcttg
gi|19 : GCTA-TCCTTACATGTTCAAAATGATTGTTTTGTTTCTTAATAACATTTTACACTAAACTGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTCTCTTTGAAATAAACGTGCGGCGatgccttgcttcaatctttgtcat
gi|21 : ttTTTGTCTCTTAATAACGTTTTGCACTAAACGGTCATTCTCTGTCGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAatagttatgccttgcattaatatttatct
gi|20 : CATTTTGCACTAAACGGTCGTTATCTGTTGGTTCATATCCAT-AAAATA--AACAAACTAAGCAAACTCATTGTTGTTTCTTTATAACAAACTTGCGGCGCCAATG-ATGC-TTTGCATac
gi|22 : ggTATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTATTTCTATAAAACAAACcaatctttg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): CACATGAAATTGAGTCACCAAGTGAACGTTAGTTTATACTAATTATTTTTA
Alignments
lowQualScore : 2222222222222222 11111 44444444444 22222222222222222222
lowQualScore : 0000000000000000 3 3 555 6666 1 77 55555 6 3 6666 3 3 1 1 33 0 5 8888888 22222222222 5555 2 3 2 33 33 2 55555555555555555555 0 0 2 2 33 0 3 3 3
lowQualScore : ................ . . ... .... . .. ..... . . .... . . . . .. . . ....... ........... .... . . . .. .. . .................... . . . . .. . . . .
lowQualScore : 4444444444444444 1 2 444 5555 5 33 88888 2 1 5555 1 2 6 2 99 2 2 6666666 22222222222 3333 5 2 5 11 44 5 00000000000000000000 3 3 6 5 44 3 3 3 3
consensus : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTG-ATGC-CTTGCAT
Reference ( family-4002 ) : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATNTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCGTGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACGTTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTG-ACGC-CTTGCAT
gi|1 : AAGTGAAAGTTCACATGCAACAATGAATATGACGACCGATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTATTCAC---ATCTAATGATCTAAATATCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATCAAAATAGTATACGGAGC--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGAACGGTTT--TTATATCCAAACCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATGTGGCTTTGGAAATGCCTTGTT------ATGTGTGTTCACCTTGTTATTT--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGATT-TTT-TTCGA--TTTTTTTAACTCTGGTAAAACAATAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTCCCTACATCTAATCGATTTTAC--------------------CCAGATCAAGCTAACTCTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTTTGTTGGTACATATTTAT-AAAATA--TACATACAAAGCAAACTCATTATTGTTTCTTCAAATCAAACTTGCGGCGCCATTGCACACGTTTGTAT
gi|10 : TCACATACAACAATGAATATAATGACTAATAAAACCCTTTACTATTGTAACTATTTTCGAATAC-GGTTAAGTCTGTGATGTACTCAC---ATCAAATGATATAAA-------------ACAA----GACACCAAAACCATGTACATGATTATGAAAATAGCAAACGGAAG--AAA--CT-C-A-ACAGCTT----TT-GTCATTCATGCAACCG-TTT--TTATATCCAGTTCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCG-AAATGC-TTGTA------ATGTGTGTTCAACTTGTTATT------CGTGTT----T-GCGATAAGGTATCAAACGTCAAACAATCCTTGAAGTG---ACA-TTT-TT-TA--TTTATTT-ACGCTGGTAAATCGACAGAATTCGTTTATCTTTCGATTTTATATTTTTGGCTTTTCTTCATCTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTtgtactgtt
gi|11 : AAGTGAAAGTTCACATGCAACAATGAATATGATAACCAATGAAACC----------------ATTTTAGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATAATATAAATTTCATCAATCACACAATTAAGTGACCAAAACCATGTACATGATTAT---AATAGTTTACGGAAG--AAA--C--CCA-GCAGCTTAAAATT-GTCATTTGTGCAATCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTTAGTTCGACAAATATTTCTGTAATAAATTTGGCATCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTA-TT--A---GTGTT----T-GAGAAAAGGTGC----CGTAACACAATTCTTGAAGTGGCGACT-TAA-TTATA---TTTTTT-ACTCCGATAAATCAATAGAACTCGTTTAACTTTCGATTTTATATATT
gi|12 : aagtagaaagaatgtaaacAAAGTTCTCCGTTCGGAAAATATTTCATCAATAAGTTTGGCTTTGGAAATGCCTCGTA------ATGTGTGTTGAAAGTGTTATT------CATGTT----C-AGGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGATT-GTT-TCCTA--TTTT-TT-ACTCTGGTTAATCGACATATCTCGTTTATTATTCAATTATATATTTTTGGGTTTCCTACATCTCAATTATTTTAC--------------------CTAGATCAAGCCAGCCTTACATGTTCAAAATGAGTGTTTTGTCTCTCGATAACTTTTTACACTAAACGGCAATTCTCTGTTGGTGTATATACAT-AAAATA--TACATATAAAGCAAACTCATTGTTGCTTCTTAAAAACAAACTTATGGCGCTATTG-ATTC-ATTGCAT
gi|13 : GTTCGATAAATATTTCTGTGATAAATTTGGCTTTGGAAATGCCCTGTA------ACGTGT--TTAACTTATTATT------CGTGTT----T-GAGATAAGGTGTCA----TTACAAAATCCTTGAAGTGGTGACT-TTTTTTCTA--TTTTTGT-ACTCTGGTCAATCGACAGAACTAGTTTATCTTTCGGTTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTACAGCAAGCTAGCCTTACATGTTCAAAGTGATTGTTTTGTCTCTTGATAACGTTTTACACTAAAAGGCCATTCTCTTTTGGTACATATTCAGAAAAATA--AACATACAAAGGAAACTCAGTGTTATTTCGTTAAAACAAACTTGCGGCGCCATTG-ATAC-CTTGCATcaatatttttctt
gi|14 : TTCATGCGATCTATTT--TTATATCCACTTCAGGTTAAA-----------------TATTTCTGTAATAAAGTTGGCTT-GGAAATGCCTTGTT------ATGTGTGTTTAACTTGTTATT------CGTGTT----T-GAGAAAATGTACAAAACATCACACAATCCTTGAAATGGTGACT-TTT-T-CTA--TTTT-------------GATTGACAGAACT------------------ATATTTTTGGTTTTCCTACATCTCATCTACTTTAC--------------------CTAGATCATGGTAGTCAAACATGTTCAAA-TGATTGTTTTGTCCTTTAATAACGTTTTACATTAAACGGTCATTCTCTGTCGATACATATTCAT-AAAATG--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAATCAAACTTGTGGCGCCATTG-ATGC-CTTGCATcaatccttgtcttg
gi|15 : GGTTAAAGCTCTCTGTTCGATAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------A--------------------------CGTGTT----T-GAGAAAATATGTCA----TAACACAATCCTTAAAGTGGTAACT-TAA-TTCTA--TTGTTT--ACTCTGATATATCGATAGAACTCGTTTATCTTTTGATTTTACATTTTTGGCTTTCCTATATCTTATTTATTTTAC--------------------CTAAATCAAGC----CTTACCTGTTCAAAATGATTGTTTTGTCTCTTTATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACAAACAAAGCAAACTCATTGTTA-TTCTTTAAAACAAACTTGCcaaggttg
gi|16 : tttattccatttttagAAAGTTCACATGCAACAATGAATATGATAACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCGGTGATTTACTCACTGCAACCAATGATCTAAATTTCATTAATTACACCA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATATGGAAG--AAAA-C--C-A-GCAGCTT----TT-GGTATTTGTGCAACCAATTT--TTATATCCATATCCGGTTAAAGTTCTCTGTTTGACAAATATTTCTGAAATAAATTTGGCTTTAGAAATGTTTTCTT------TTGTGTGTTCAACTTG----TT--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACTCAATCCTTAAAGTGGTGACTATTT-CTCAA--TTATTTT-cttgcataaatctttgtcttg
gi|17 : gcaAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCATTGATCTAAATTTCATCATTTACACAA----GTGACCAAAACCATGTTTATGATTATGAAAAAAGTATATGGAAGAAAAA--C--C-A-GCAGCTT----TT-GTCATTCATGCTACCGGTTT--TTATATCCATATCAAGTT-AAGTTGTTCGTTCGGCAAATAGTTTTGTAAT
gi|18 : GATCATGCTAGCCTTATATGTTCAAAATGATT-TTTTGTCTCTTGGTAACATTTAAAACTAAACGGTTATTCTCTGTTGGTACATATTCAT-TAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACATGTGGTACCATTG-ATGC-CTTGCt
gi|19 : GCTATCCTTACATGTTCAAAATGATTGTTTTGTTTCTTAATAACATTTTACACTAAACTGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTCTCTTTGAAATAAACGTGCGGCGATAGTT-ATGC-CTTGCATttcaatctttgtcat
gi|2 : ttAAGGGAAAGTTCACATGCAACAATGAATATAACGACCAATGAAACC----------------ATTTTCTG-TGTTGGTTTAGTCTGTGATGTACTCAC---ATCCAATGATCTAAATTTCATCATTTACACAA----GTGAACAAAACCATGTACATGATTATGAAAATAGTATACGG--G--AAACCC--C-A-GCAGCTT----TT-ATCATTCATGCGAACGGTTT--TTATATCCAGATCTCGTTTAAGTTCTCTGTTCGACAAATATTTTTGTTATAAATTTGGCTTAGGAAATGCTTTTTA------ATGTGCGTTCAACTTGT--------TTCGTGTT----T-GAGAAAAGGTGT----CATAACACAATCTTTGAAATGGTGACT-TAA-TTCTA--TTGTTTT-ACTCTGATAAATCG--AGAACTCGTTTATCTTTCTATTATATATTTATGGTTTTCCTACATCTCATT-------------------------------GATCAAACTAGACTTACATGTTCAAAATGATTGTTTTGTCTCTTCATAACGTTTTGCACTAAACGGTCATTCTCTGTTGGTACACACTCAT-AAAATA--AACATACAAAGCAAACTCAATGTTGTTTCTTTAAAACAAACTTACGGCGCCATTG-ATGC-CTTGCAtaatatttatct
gi|20 : aagtagaaagaatgtaaacCATTTTGCACTAAACGGTCGTTATCTGTTGGTTCATATCCAT-AAAATA--AACAAACTAAGCAAACTCATTGTTGTTTCTTTATAACAAACTTGCGGCGCCAATG-ATGC-TTTGCATccaatctttgtcttg
gi|21 : ggTTTGTCTCTTAATAACGTTTTGCACTAAACGGTCATTCTCTGTCGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACcaatctttg
gi|22 : TATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTATTTCTATAAAACAAAC
gi|3 : AAGTGAAAGTTCACATGCAATAATAAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCT--------------------AATGATCTAA-TGTCATCAATTACACAA----GTGAC-AAAACCATGTCCATGATTAATAAAATAGTATACGGAAG--AAA--A--C-AAGCAGTTT----TTTGTTATTCATTTTACCCGTTT--TTATATCCAGATCAGGTTAAAGTT-TCCATTCGACAAATATTTCTGTAATAAATTTGGCT--------------------------GTGTTTAACTTGTT---T---TTCGTGTT----T-GAGAAA-GCTATCAAACATTACACAATCCTTAAAGTGGTGATT-TTT-CTTTT--TTTTTTT-ACTCTGGTAACTCGGCAGAACTCGTTTATTTTTCGATTTTATATTTTTTAATTTCCTACATCTCTTTTATTTTAC--------------------CAAGATCAAGCTAGCCTTACATGTTAAAAA-AATAGCTTTGTCTTTTGATAACATTGTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAAAAACAACATACAAAACAAATTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCTACTG-ACGC-CTTGCATaatctgtcttgtttt
gi|4 : aagtagaaataatgtaaacATGACTATGATGACTA-TGAAACT----------------ACTTTCTA-TGTTGGTTTAGTCTGTGATGTACTCAT---GTTTAGTGATCTAAATTTCATCATTTACACAA----ATGACCAAAACCATTTACATGATTGTGAAAATAGTATACAGAAG--AAA--C--C----CAGCT-----------------GGGAGTGTTTA--TTATATCCAGATCAGGTTAAAGT-ATCCATTCCACACATATTATTGTAATAAATTTGGCTTTGGAAATTCCTTGTG------ATGTGTGTTCAACTTGTTATT------CATATT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGGAGTGGTGACT-GTA-T-CTG--TTTTTT--ACTGTGGAAAATCGACAGGACTCGTTTATCTTTCGATTTTATATTCTTAGCTTTCCTACATCTCAATTATTTTACTTACATCTCAATTATTTTACCTGAATCAAGCTAGCC-TACATGTTCAAAATGATTGTTTTGTCTCTTGATAAGATTTTACACTAAACGGTCATTTTCTATTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGATTCTTTAAAACAAACTTTTGAAGCCATTG-ATGC-CTTGCATcaatctttgccttg
gi|5 : AAGTAAAAGTTCACATGCAACAATAAATATGATGATTTATGAAAAC----------------ATTTTCGA-TGTTGTTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--CCA-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATGTGCAGATAAGGTTAAAGTTCTCTGTTCGAAAAATATTTCTGTAAAAGATTTGGCTTCGGAAATGCCTTGTATATATAATGTGTTTTCAACTTGTTATCTGTATT--TGAC----T-GAGAAAAGGTGTCG----TAACACAATCCTTGAAGTGGTGACT-TAA-TTCTA--TTTCTCT-TCTCTGATAAATCGACAAAACTCGTTTATCTTTCGATTTTATATTTTTGGCATTCCTACATGTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTATATGTTCAACATGATTGTTTTGTCTCTTAATAATATTTTACACAAAACGGTCATTCTCTGTTGGTAGATATTCAT-AAAATA--A----ACAAAGCAAACTAATcaacctttgtct
gi|6 : agtagaaaaaaggttaccACC----------------ATTTCCGA-TGTTGGTTTAGACTGTCATGTTTTCAC---ATCCAAAGATCTAAATTTCATCAATTACAAAA----GTGACCAAAACCATGTGCATAATTATGAAAACAGTATACGGAAA--AAA--AAAC-A-GCAGTTT----TT-GTCATTCGTGCAAACGGTTTATTTATATCCAGGTCA------AGTTCTCAGTTTGACAAATATTTACGTTATACATTTGGCTTTGGAAATACCTTGTA------ATGTGTGTTAAACTTGCTATT------CTTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGA-T-TTT-TTCTAAATTGTTTT-ACTCTGGGAAATCGACAGAGCTTGTTTATCTTTCGATTTTATATTGATGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGATTTGTCTCTTAATAACATTTTACACTAAACGATCATTCTCATTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTT-AAATAAACTTGCGGTGCCATTG-ATGC-CTTGCAT
gi|7 : gacaacAAGCGAAAGTTCACATGCAACAATGA-CATCATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTG------TCAC---ATCCGATGATCTAAATTTCATCAATTACACAA----GTAACCAAAACCA---------------AAATAA-------AAG--AAAT-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATAGCCAGATCAAGTTAAAGCTCTGAGTTCGACAAATATTTCAGCAATAAATTTGGCTTTGGAAATGCCTTGT----------------------------T--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGACGTGGTAACT-TTT-TTCTA----TTTTT-ACTCTGGTAAA----------TCGTTTATCTTCCGATTTTATTTTTTTGGCTTTCCTACATTTCATCTATTTGAC--------------------CTAGATCATGCTAACC-TACATGTTCAAAATGAAT-TTTTGTCTCTTGATAAGATTTTACACT-----TTCATTCTCCGATGTTACATATTCAT-AAAATA--AACATACACAGCAAACTCATTGTTG-----TTAAAACAAACTTGCGGCAACATTG-CTAC-CTTGCATcaatctttgt
gi|8 : AATTGAAAGTTCACATGCAGAAATGAATATGACGACTAATACAACC----------------ATTTTCGG-TGTTGGCTTAGTCAGTGAGTTACTCAC---ATCCAAAGATATAAATTTCATCAATTACACAA----GTGACTAAAACCATGTACATGATTATCAAAATAGTATACGAAAGA-AAA--T--C-A-GCAGCTT----TT-GACATTCATGCGAGCGGTAA--TTATATCCAGATCAGGTTAACGTTCTCCTTTCGACAAATATTTCTGTAATAAATCTGGCTTTGGAAATGCCTTGTA------ATGTGTGTTCAACATG----TT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCATACAATCCTTGAAGTGGTGAC--TTG-TTCTA--GGTTTAT-ACACTGGTAAA-CAACAGAACTCGTTTATCTTTCTATTTTATATTTTTG----TCCT--------TCTATTTTAC--------------------CTAGATCAAGCCAGCCTTATATGTTTAAAATGATTGTTTTGTCTCTTTATAACAGTTTACACTGAACGGTCATTCTCTcaatctttgtcttg
gi|9 : aagtagaaagaatgtaaacAAGTGAAAATTCACGTGCGACAATGTATATGATGACTTATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTAATGTACTCAC---ATCTAATGTTCTAAATTTAATCAATTACATAA----ATGACCAAAATCATTTACATGATTATGAAAATAGTATACGGAAG--AAAC-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATATCCAGATCAGGCTAAAATTCTCCTTTTTACAAATATTTCTGTAATAAATTTGACTTTGGAAATTCTTTGTA------ATGTGTGTTCAACTTG-TA-----ATTCGTGTTAAAGTAAAGTAAAGGTATGAAACATCACACAATCCTTGACGTGATAA-T-TTT-TTATT--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTAT------A--------TTTTGGCTTTCCTACATCTCATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CACATGAAATTGAGTCACCAAGTGAACGTTAGTTTATACTAATTATTTTTA
Alignments
lowQualScore : 2222222222222222 11111 44444444444 22222222222222222222
lowQualScore : 0000000000000000 3 3 555 6666 1 77 55555 6 3 6666 3 1 1 33 0 5 8888888 22222222222 5555 2 3 2 33 33 2 55555555555555555555 0 0 2 33 0
lowQualScore : ................ . . ... .... . .. ..... . . .... . . . .. . . ....... ........... .... . . . .. .. . .................... . . . .. .
lowQualScore : 4444444444444444 1 9 444 5555 5 33 88888 2 1 5555 1 6 2 99 2 2 6666666 22222222222 3333 5 2 5 11 44 5 00000000000000000000 3 3 5 44 3
consensus : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
Reference ( family-4002 ) : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
gi|1 : AAGTGAAAGTTCACATGCAACAATGAATATGACGACCGATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTATTCAC---ATCTAATGATCTAAATATCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATCAAAATAGTATACGGAGC--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGAACGGTTT--TTATATCCAAACCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATGTGGCTTTGGAAATGCCTTGTT------ATGTGTGTTCACCTTGTTATTT--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGATT-TTT-TTCGA--TTTTTTTAACTCTGGTAAAACAATAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTCCCTACATCTAATCGATTTTAC--------------------CCAGATCAAGCTAACTCTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTTTGTTGGTACATATTTAT-AAAATA--TACATACAAAGCAAACTCATTATTGTTTCTTCAAATCAAACTTGCGGCGCCATTG
gi|10 : TCACATACAACAATGAATATAATGACTAATAAAACCCTTTACTATTGTAACTATTTTCGAATAC-GGTTAAGTCTGTGATGTACTCAC---ATCAAATGATATAAA-------------ACAA----GACACCAAAACCATGTACATGATTATGAAAATAGCAAACGGAAG--AAA--CT-C-A-ACAGCTT----TT-GTCATTCATGCAACCG-TTT--TTATATCCAGTTCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCG-AAATGC-TTGTA------ATGTGTGTTCAACTTGTTATT------CGTGTT----T-GCGATAAGGTATCAAACGTCAAACAATCCTTGAAGTG---ACA-TTT-TT-TA--TTTATTT-ACGCTGGTAAATCGACAGAATTCGTTTATCTTTCGATTTTATATTTTTGGCTTTTCTTCATCTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTcacacgtttgtattgtactgtt
gi|11 : AAGTGAAAGTTCACATGCAACAATGAATATGATAACCAATGAAACC----------------ATTTTAGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATAATATAAATTTCATCAATCACACAATTAAGTGACCAAAACCATGTACATGATTAT---AATAGTTTACGGAAG--AAA--C--CCA-GCAGCTTAAAATT-GTCATTTGTGCAATCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTTAGTTCGACAAATATTTCTGTAATAAATTTGGCATCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTA-TT--A---GTGTT----T-GAGAAAAGGTGC----CGTAACACAATTCTTGAAGTGGCGACT-TAA-TTATA---TTTTTT-ACTCCGATAAATCAATAGAACTCGTTTAACTTTCGATTTTATATATT
gi|12 : aagtagaaagaatgtaaacAAAGTTCTCCGTTCGGAAAATATTTCATCAATAAGTTTGGCTTTGGAAATGCCTCGTA------ATGTGTGTTGAAAGTGTTATT------CATGTT----C-AGGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGATT-GTT-TCCTA--TTTT-TT-ACTCTGGTTAATCGACATATCTCGTTTATTATTCAATTATATATTTTTGGGTTTCCTACATCTCAATTATTTTAC--------------------CTAGATCAAGCCAGCCTTACATGTTCAAAATGAGTGTTTTGTCTCTCGATAACTTTTTACACTAAACGGCAATTCTCTGTTGGTGTATATACAT-AAAATA--TACATATAAAGCAAACTCATTGTTGCTTCTTAAAAACAAACTTATGGCGCTATTGATTCATTGCAT
gi|13 : GTTCGATAAATATTTCTGTGATAAATTTGGCTTTGGAAATGCCCTGTA------ACGTGT--TTAACTTATTATT------CGTGTT----T-GAGATAAGGTGTCA----TTACAAAATCCTTGAAGTGGTGACT-TTTTTTCTA--TTTTTGT-ACTCTGGTCAATCGACAGAACTAGTTTATCTTTCGGTTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTACAGCAAGCTAGCCTTACATGTTCAAAGTGATTGTTTTGTCTCTTGATAACGTTTTACACTAAAAGGCCATTCTCTTTTGGTACATATTCAGAAAAATA--AACATACAAAGGAAACTCAGTGTTATTTCGTTAAAACAAACTTGCGGCGCCATTGATACCTTGCATcaatatttttctt
gi|14 : TTCATGCGATCTATTT--TTATATCCACTTCAGGTTAAA-----------------TATTTCTGTAATAAAGTTGGCTT-GGAAATGCCTTGTT------ATGTGTGTTTAACTTGTTATT------CGTGTT----T-GAGAAAATGTACAAAACATCACACAATCCTTGAAATGGTGACT-TTT-T-CTA--TTTT-------------GATTGACAGAACT------------------ATATTTTTGGTTTTCCTACATCTCATCTACTTTAC--------------------CTAGATCATGGTAGTCAAACATGTTCAAA-TGATTGTTTTGTCCTTTAATAACGTTTTACATTAAACGGTCATTCTCTGTCGATACATATTCAT-AAAATG--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAATCAAACTTGTGGCGCCATTGATGCCTTGCATcaatccttgtcttg
gi|15 : GGTTAAAGCTCTCTGTTCGATAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------A--------------------------CGTGTT----T-GAGAAAATATGTCA----TAACACAATCCTTAAAGTGGTAACT-TAA-TTCTA--TTGTTT--ACTCTGATATATCGATAGAACTCGTTTATCTTTTGATTTTACATTTTTGGCTTTCCTATATCTTATTTATTTTAC--------------------CTAAATCAAGC----CTTACCTGTTCAAAATGATTGTTTTGTCTCTTTATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACAAACAAAGCAAACTCATTGTTA-TTCTTTAAAACAAACTTGCcaaggttg
gi|16 : tttattccatttttagAAAGTTCACATGCAACAATGAATATGATAACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCGGTGATTTACTCACTGCAACCAATGATCTAAATTTCATTAATTACACCA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATATGGAAG--AAAA-C--C-A-GCAGCTT----TT-GGTATTTGTGCAACCAATTT--TTATATCCATATCCGGTTAAAGTTCTCTGTTTGACAAATATTTCTGAAATAAATTTGGCTTTAGAAATGTTTTCTT------TTGTGTGTTCAACTTG----TT--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACTCAATCCTTAAAGTGGTGACTATTT-CTCAA--TTATTTT-cttgcataaatctttgtcttg
gi|17 : gcaAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCATTGATCTAAATTTCATCATTTACACAA----GTGACCAAAACCATGTTTATGATTATGAAAAAAGTATATGGAAGAAAAA--C--C-A-GCAGCTT----TT-GTCATTCATGCTACCGGTTT--TTATATCCATATCAAGTT-AAGTTGTTCGTTCGGCAAATAGTTTTGTAAT
gi|18 : GATCATGCTAGCCTTATATGTTCAAAATGATT-TTTTGTCTCTTGGTAACATTTAAAACTAAACGGTTATTCTCTGTTGGTACATATTCAT-TAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACATGTGGTACCATTGATGCCTTGCt
gi|19 : GCTATCCTTACATGTTCAAAATGATTGTTTTGTTTCTTAATAACATTTTACACTAAACTGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTCTCTTTGAAATAAACGTGCGGCGATAGTTATGCCTTGCATttcaatctttgtcat
gi|2 : ttAAGGGAAAGTTCACATGCAACAATGAATATAACGACCAATGAAACC----------------ATTTTCTG-TGTTGGTTTAGTCTGTGATGTACTCAC---ATCCAATGATCTAAATTTCATCATTTACACAA----GTGAACAAAACCATGTACATGATTATGAAAATAGTATACGG--G--AAACCC--C-A-GCAGCTT----TT-ATCATTCATGCGAACGGTTT--TTATATCCAGATCTCGTTTAAGTTCTCTGTTCGACAAATATTTTTGTTATAAATTTGGCTTAGGAAATGCTTTTTA------ATGTGCGTTCAACTTGT--------TTCGTGTT----T-GAGAAAAGGTGT----CATAACACAATCTTTGAAATGGTGACT-TAA-TTCTA--TTGTTTT-ACTCTGATAAATCG--AGAACTCGTTTATCTTTCTATTATATATTTATGGTTTTCCTACATCTCATT-------------------------------GATCAAACTAGACTTACATGTTCAAAATGATTGTTTTGTCTCTTCATAACGTTTTGCACTAAACGGTCATTCTCTGTTGGTACACACTCAT-AAAATA--AACATACAAAGCAAACTCAATGTTGTTTCTTTAAAACAAACTTACGGCGCCATTGATGCCTTGCAtaatatttatct
gi|20 : aagtagaaagaatgtaaacCATTTTGCACTAAACGGTCGTTATCTGTTGGTTCATATCCAT-AAAATA--AACAAACTAAGCAAACTCATTGTTGTTTCTTTATAACAAACTTGCGGCGCCAATGATGCTTTGCATccaatctttgtcttg
gi|21 : ggTTTGTCTCTTAATAACGTTTTGCACTAAACGGTCATTCTCTGTCGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACcaatctttg
gi|22 : TATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTATTTCTATAAAACAAAC
gi|3 : AAGTGAAAGTTCACATGCAATAATAAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCT--------------------AATGATCTAA-TGTCATCAATTACACAA----GTGAC-AAAACCATGTCCATGATTAATAAAATAGTATACGGAAG--AAA--A--C-AAGCAGTTT----TTTGTTATTCATTTTACCCGTTT--TTATATCCAGATCAGGTTAAAGTT-TCCATTCGACAAATATTTCTGTAATAAATTTGGCT--------------------------GTGTTTAACTTGTT---T---TTCGTGTT----T-GAGAAA-GCTATCAAACATTACACAATCCTTAAAGTGGTGATT-TTT-CTTTT--TTTTTTT-ACTCTGGTAACTCGGCAGAACTCGTTTATTTTTCGATTTTATATTTTTTAATTTCCTACATCTCTTTTATTTTAC--------------------CAAGATCAAGCTAGCCTTACATGTTAAAAA-AATAGCTTTGTCTTTTGATAACATTGTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAAAAACAACATACAAAACAAATTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCTACTGACGCCTTGCATaatctgtcttgtttt
gi|4 : aagtagaaataatgtaaacATGACTATGATGACTA-TGAAACT----------------ACTTTCTA-TGTTGGTTTAGTCTGTGATGTACTCAT---GTTTAGTGATCTAAATTTCATCATTTACACAA----ATGACCAAAACCATTTACATGATTGTGAAAATAGTATACAGAAG--AAA--C--C----CAGCT-----------------GGGAGTGTTTA--TTATATCCAGATCAGGTTAAAGT-ATCCATTCCACACATATTATTGTAATAAATTTGGCTTTGGAAATTCCTTGTG------ATGTGTGTTCAACTTGTTATT------CATATT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGGAGTGGTGACT-GTA-T-CTG--TTTTTT--ACTGTGGAAAATCGACAGGACTCGTTTATCTTTCGATTTTATATTCTTAGCTTTCCTACATCTCAATTATTTTACTTACATCTCAATTATTTTACCTGAATCAAGCTAGCC-TACATGTTCAAAATGATTGTTTTGTCTCTTGATAAGATTTTACACTAAACGGTCATTTTCTATTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGATTCTTTAAAACAAACTTTTGAAGCCATTGATGCCTTGCATcaatctttgccttg
gi|5 : AAGTAAAAGTTCACATGCAACAATAAATATGATGATTTATGAAAAC----------------ATTTTCGA-TGTTGTTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--CCA-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATGTGCAGATAAGGTTAAAGTTCTCTGTTCGAAAAATATTTCTGTAAAAGATTTGGCTTCGGAAATGCCTTGTATATATAATGTGTTTTCAACTTGTTATCTGTATT--TGAC----T-GAGAAAAGGTGTCG----TAACACAATCCTTGAAGTGGTGACT-TAA-TTCTA--TTTCTCT-TCTCTGATAAATCGACAAAACTCGTTTATCTTTCGATTTTATATTTTTGGCATTCCTACATGTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTATATGTTCAACATGATTGTTTTGTCTCTTAATAATATTTTACACAAAACGGTCATTCTCTGTTGGTAGATATTCAT-AAAATA--A----ACAAAGCAAACTAATcaacctttgtct
gi|6 : agtagaaaaaaggttaccACC----------------ATTTCCGA-TGTTGGTTTAGACTGTCATGTTTTCAC---ATCCAAAGATCTAAATTTCATCAATTACAAAA----GTGACCAAAACCATGTGCATAATTATGAAAACAGTATACGGAAA--AAA--AAAC-A-GCAGTTT----TT-GTCATTCGTGCAAACGGTTTATTTATATCCAGGTCA------AGTTCTCAGTTTGACAAATATTTACGTTATACATTTGGCTTTGGAAATACCTTGTA------ATGTGTGTTAAACTTGCTATT------CTTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGA-T-TTT-TTCTAAATTGTTTT-ACTCTGGGAAATCGACAGAGCTTGTTTATCTTTCGATTTTATATTGATGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGATTTGTCTCTTAATAACATTTTACACTAAACGATCATTCTCATTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTT-AAATAAACTTGCGGTGCCATTGATGCCTTGCAT
gi|7 : gacaacAAGCGAAAGTTCACATGCAACAATGA-CATCATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTG------TCAC---ATCCGATGATCTAAATTTCATCAATTACACAA----GTAACCAAAACCA---------------AAATAA-------AAG--AAAT-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATAGCCAGATCAAGTTAAAGCTCTGAGTTCGACAAATATTTCAGCAATAAATTTGGCTTTGGAAATGCCTTGT----------------------------T--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGACGTGGTAACT-TTT-TTCTA----TTTTT-ACTCTGGTAAA----------TCGTTTATCTTCCGATTTTATTTTTTTGGCTTTCCTACATTTCATCTATTTGAC--------------------CTAGATCATGCTAACC-TACATGTTCAAAATGAAT-TTTTGTCTCTTGATAAGATTTTACACT-----TTCATTCTCCGATGTTACATATTCAT-AAAATA--AACATACACAGCAAACTCATTGTTG-----TTAAAACAAACTTGCGGCAACATTGCTACCTTGCATcaatctttgt
gi|8 : AATTGAAAGTTCACATGCAGAAATGAATATGACGACTAATACAACC----------------ATTTTCGG-TGTTGGCTTAGTCAGTGAGTTACTCAC---ATCCAAAGATATAAATTTCATCAATTACACAA----GTGACTAAAACCATGTACATGATTATCAAAATAGTATACGAAAGA-AAA--T--C-A-GCAGCTT----TT-GACATTCATGCGAGCGGTAA--TTATATCCAGATCAGGTTAACGTTCTCCTTTCGACAAATATTTCTGTAATAAATCTGGCTTTGGAAATGCCTTGTA------ATGTGTGTTCAACATG----TT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCATACAATCCTTGAAGTGGTGAC--TTG-TTCTA--GGTTTAT-ACACTGGTAAA-CAACAGAACTCGTTTATCTTTCTATTTTATATTTTTG----TCCT--------TCTATTTTAC--------------------CTAGATCAAGCCAGCCTTATATGTTTAAAATGATTGTTTTGTCTCTTTATAACAGTTTACACTGAACGGTCATTCTCTcaatctttgtcttg
gi|9 : aagtagaaagaatgtaaacAAGTGAAAATTCACGTGCGACAATGTATATGATGACTTATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTAATGTACTCAC---ATCTAATGTTCTAAATTTAATCAATTACATAA----ATGACCAAAATCATTTACATGATTATGAAAATAGTATACGGAAG--AAAC-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATATCCAGATCAGGCTAAAATTCTCCTTTTTACAAATATTTCTGTAATAAATTTGACTTTGGAAATTCTTTGTA------ATGTGTGTTCAACTTG-TA-----ATTCGTGTTAAAGTAAAGTAAAGGTATGAAACATCACACAATCCTTGACGTGATAA-T-TTT-TTATT--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTAT------A--------TTTTGGCTTTCCTACATCTCATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CACATGAAATTGAGTCACCAAGTGAACGTTAGTTTATACTAATTATTTTTA
Alignments
lowQualScore : 2222222222222222 11111 44444444444 22222222222222222222
lowQualScore : 0000000000000000 3 3 555 6666 1 77 55555 6 3 6666 3 1 1 33 0 5 8888888 22222222222 5555 2 3 2 33 33 2 55555555555555555555 0 0 2 33 0
lowQualScore : ................ . . ... .... . .. ..... . . .... . . . .. . . ....... ........... .... . . . .. .. . .................... . . . .. .
lowQualScore : 4444444444444444 1 9 444 5555 5 33 88888 2 1 5555 1 6 2 99 2 2 6666666 22222222222 3333 5 2 5 11 44 5 00000000000000000000 3 3 5 44 3
consensus : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
Reference ( family-4002 ) : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
gi|1 : AAGTGAAAGTTCACATGCAACAATGAATATGACGACCGATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTATTCAC---ATCTAATGATCTAAATATCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATCAAAATAGTATACGGAGC--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGAACGGTTT--TTATATCCAAACCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATGTGGCTTTGGAAATGCCTTGTT------ATGTGTGTTCACCTTGTTATTT--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGATT-TTT-TTCGA--TTTTTTTAACTCTGGTAAAACAATAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTCCCTACATCTAATCGATTTTAC--------------------CCAGATCAAGCTAACTCTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTTTGTTGGTACATATTTAT-AAAATA--TACATACAAAGCAAACTCATTATTGTTTCTTCAAATCAAACTTGCGGCGCCATTG
gi|10 : TCACATACAACAATGAATATAATGACTAATAAAACCCTTTACTATTGTAACTATTTTCGAATAC-GGTTAAGTCTGTGATGTACTCAC---ATCAAATGATATAAA-------------ACAA----GACACCAAAACCATGTACATGATTATGAAAATAGCAAACGGAAG--AAA--CT-C-A-ACAGCTT----TT-GTCATTCATGCAACCG-TTT--TTATATCCAGTTCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCG-AAATGC-TTGTA------ATGTGTGTTCAACTTGTTATT------CGTGTT----T-GCGATAAGGTATCAAACGTCAAACAATCCTTGAAGTG---ACA-TTT-TT-TA--TTTATTT-ACGCTGGTAAATCGACAGAATTCGTTTATCTTTCGATTTTATATTTTTGGCTTTTCTTCATCTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTcacacgtttgtattgtactgtt
gi|11 : AAGTGAAAGTTCACATGCAACAATGAATATGATAACCAATGAAACC----------------ATTTTAGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATAATATAAATTTCATCAATCACACAATTAAGTGACCAAAACCATGTACATGATTAT---AATAGTTTACGGAAG--AAA--C--CCA-GCAGCTTAAAATT-GTCATTTGTGCAATCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTTAGTTCGACAAATATTTCTGTAATAAATTTGGCATCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTA-TT--A---GTGTT----T-GAGAAAAGGTGC----CGTAACACAATTCTTGAAGTGGCGACT-TAA-TTATA---TTTTTT-ACTCCGATAAATCAATAGAACTCGTTTAACTTTCGATTTTATATATT
gi|12 : aagtagaaagaatgtaaacAAAGTTCTCCGTTCGGAAAATATTTCATCAATAAGTTTGGCTTTGGAAATGCCTCGTA------ATGTGTGTTGAAAGTGTTATT------CATGTT----C-AGGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGATT-GTT-TCCTA--TTTT-TT-ACTCTGGTTAATCGACATATCTCGTTTATTATTCAATTATATATTTTTGGGTTTCCTACATCTCAATTATTTTAC--------------------CTAGATCAAGCCAGCCTTACATGTTCAAAATGAGTGTTTTGTCTCTCGATAACTTTTTACACTAAACGGCAATTCTCTGTTGGTGTATATACAT-AAAATA--TACATATAAAGCAAACTCATTGTTGCTTCTTAAAAACAAACTTATGGCGCTATTGATTCATTGCAT
gi|13 : GTTCGATAAATATTTCTGTGATAAATTTGGCTTTGGAAATGCCCTGTA------ACGTGT--TTAACTTATTATT------CGTGTT----T-GAGATAAGGTGTCA----TTACAAAATCCTTGAAGTGGTGACT-TTTTTTCTA--TTTTTGT-ACTCTGGTCAATCGACAGAACTAGTTTATCTTTCGGTTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTACAGCAAGCTAGCCTTACATGTTCAAAGTGATTGTTTTGTCTCTTGATAACGTTTTACACTAAAAGGCCATTCTCTTTTGGTACATATTCAGAAAAATA--AACATACAAAGGAAACTCAGTGTTATTTCGTTAAAACAAACTTGCGGCGCCATTGATACCTTGCATcaatatttttctt
gi|14 : TTCATGCGATCTATTT--TTATATCCACTTCAGGTTAAA-----------------TATTTCTGTAATAAAGTTGGCTT-GGAAATGCCTTGTT------ATGTGTGTTTAACTTGTTATT------CGTGTT----T-GAGAAAATGTACAAAACATCACACAATCCTTGAAATGGTGACT-TTT-T-CTA--TTTT-------------GATTGACAGAACT------------------ATATTTTTGGTTTTCCTACATCTCATCTACTTTAC--------------------CTAGATCATGGTAGTCAAACATGTTCAAA-TGATTGTTTTGTCCTTTAATAACGTTTTACATTAAACGGTCATTCTCTGTCGATACATATTCAT-AAAATG--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAATCAAACTTGTGGCGCCATTGATGCCTTGCATcaatccttgtcttg
gi|15 : GGTTAAAGCTCTCTGTTCGATAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------A--------------------------CGTGTT----T-GAGAAAATATGTCA----TAACACAATCCTTAAAGTGGTAACT-TAA-TTCTA--TTGTTT--ACTCTGATATATCGATAGAACTCGTTTATCTTTTGATTTTACATTTTTGGCTTTCCTATATCTTATTTATTTTAC--------------------CTAAATCAAGC----CTTACCTGTTCAAAATGATTGTTTTGTCTCTTTATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACAAACAAAGCAAACTCATTGTTA-TTCTTTAAAACAAACTTGCcaaggttg
gi|16 : tttattccatttttagAAAGTTCACATGCAACAATGAATATGATAACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCGGTGATTTACTCACTGCAACCAATGATCTAAATTTCATTAATTACACCA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATATGGAAG--AAAA-C--C-A-GCAGCTT----TT-GGTATTTGTGCAACCAATTT--TTATATCCATATCCGGTTAAAGTTCTCTGTTTGACAAATATTTCTGAAATAAATTTGGCTTTAGAAATGTTTTCTT------TTGTGTGTTCAACTTG----TT--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACTCAATCCTTAAAGTGGTGACTATTT-CTCAA--TTATTTT-cttgcataaatctttgtcttg
gi|17 : gcaAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCATTGATCTAAATTTCATCATTTACACAA----GTGACCAAAACCATGTTTATGATTATGAAAAAAGTATATGGAAGAAAAA--C--C-A-GCAGCTT----TT-GTCATTCATGCTACCGGTTT--TTATATCCATATCAAGTT-AAGTTGTTCGTTCGGCAAATAGTTTTGTAAT
gi|18 : GATCATGCTAGCCTTATATGTTCAAAATGATT-TTTTGTCTCTTGGTAACATTTAAAACTAAACGGTTATTCTCTGTTGGTACATATTCAT-TAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACATGTGGTACCATTGATGCCTTGCt
gi|19 : GCTATCCTTACATGTTCAAAATGATTGTTTTGTTTCTTAATAACATTTTACACTAAACTGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTCTCTTTGAAATAAACGTGCGGCGATAGTTATGCCTTGCATttcaatctttgtcat
gi|2 : ttAAGGGAAAGTTCACATGCAACAATGAATATAACGACCAATGAAACC----------------ATTTTCTG-TGTTGGTTTAGTCTGTGATGTACTCAC---ATCCAATGATCTAAATTTCATCATTTACACAA----GTGAACAAAACCATGTACATGATTATGAAAATAGTATACGG--G--AAACCC--C-A-GCAGCTT----TT-ATCATTCATGCGAACGGTTT--TTATATCCAGATCTCGTTTAAGTTCTCTGTTCGACAAATATTTTTGTTATAAATTTGGCTTAGGAAATGCTTTTTA------ATGTGCGTTCAACTTGT--------TTCGTGTT----T-GAGAAAAGGTGT----CATAACACAATCTTTGAAATGGTGACT-TAA-TTCTA--TTGTTTT-ACTCTGATAAATCG--AGAACTCGTTTATCTTTCTATTATATATTTATGGTTTTCCTACATCTCATT-------------------------------GATCAAACTAGACTTACATGTTCAAAATGATTGTTTTGTCTCTTCATAACGTTTTGCACTAAACGGTCATTCTCTGTTGGTACACACTCAT-AAAATA--AACATACAAAGCAAACTCAATGTTGTTTCTTTAAAACAAACTTACGGCGCCATTGATGCCTTGCAtaatatttatct
gi|20 : aagtagaaagaatgtaaacCATTTTGCACTAAACGGTCGTTATCTGTTGGTTCATATCCAT-AAAATA--AACAAACTAAGCAAACTCATTGTTGTTTCTTTATAACAAACTTGCGGCGCCAATGATGCTTTGCATccaatctttgtcttg
gi|21 : ggTTTGTCTCTTAATAACGTTTTGCACTAAACGGTCATTCTCTGTCGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACcaatctttg
gi|22 : TATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTATTTCTATAAAACAAAC
gi|3 : AAGTGAAAGTTCACATGCAATAATAAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCT--------------------AATGATCTAA-TGTCATCAATTACACAA----GTGAC-AAAACCATGTCCATGATTAATAAAATAGTATACGGAAG--AAA--A--C-AAGCAGTTT----TTTGTTATTCATTTTACCCGTTT--TTATATCCAGATCAGGTTAAAGTT-TCCATTCGACAAATATTTCTGTAATAAATTTGGCT--------------------------GTGTTTAACTTGTT---T---TTCGTGTT----T-GAGAAA-GCTATCAAACATTACACAATCCTTAAAGTGGTGATT-TTT-CTTTT--TTTTTTT-ACTCTGGTAACTCGGCAGAACTCGTTTATTTTTCGATTTTATATTTTTTAATTTCCTACATCTCTTTTATTTTAC--------------------CAAGATCAAGCTAGCCTTACATGTTAAAAA-AATAGCTTTGTCTTTTGATAACATTGTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAAAAACAACATACAAAACAAATTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCTACTGACGCCTTGCATaatctgtcttgtttt
gi|4 : aagtagaaataatgtaaacATGACTATGATGACTA-TGAAACT----------------ACTTTCTA-TGTTGGTTTAGTCTGTGATGTACTCAT---GTTTAGTGATCTAAATTTCATCATTTACACAA----ATGACCAAAACCATTTACATGATTGTGAAAATAGTATACAGAAG--AAA--C--C----CAGCT-----------------GGGAGTGTTTA--TTATATCCAGATCAGGTTAAAGT-ATCCATTCCACACATATTATTGTAATAAATTTGGCTTTGGAAATTCCTTGTG------ATGTGTGTTCAACTTGTTATT------CATATT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGGAGTGGTGACT-GTA-T-CTG--TTTTTT--ACTGTGGAAAATCGACAGGACTCGTTTATCTTTCGATTTTATATTCTTAGCTTTCCTACATCTCAATTATTTTACTTACATCTCAATTATTTTACCTGAATCAAGCTAGCC-TACATGTTCAAAATGATTGTTTTGTCTCTTGATAAGATTTTACACTAAACGGTCATTTTCTATTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGATTCTTTAAAACAAACTTTTGAAGCCATTGATGCCTTGCATcaatctttgccttg
gi|5 : AAGTAAAAGTTCACATGCAACAATAAATATGATGATTTATGAAAAC----------------ATTTTCGA-TGTTGTTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--CCA-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATGTGCAGATAAGGTTAAAGTTCTCTGTTCGAAAAATATTTCTGTAAAAGATTTGGCTTCGGAAATGCCTTGTATATATAATGTGTTTTCAACTTGTTATCTGTATT--TGAC----T-GAGAAAAGGTGTCG----TAACACAATCCTTGAAGTGGTGACT-TAA-TTCTA--TTTCTCT-TCTCTGATAAATCGACAAAACTCGTTTATCTTTCGATTTTATATTTTTGGCATTCCTACATGTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTATATGTTCAACATGATTGTTTTGTCTCTTAATAATATTTTACACAAAACGGTCATTCTCTGTTGGTAGATATTCAT-AAAATA--A----ACAAAGCAAACTAATcaacctttgtct
gi|6 : agtagaaaaaaggttaccACC----------------ATTTCCGA-TGTTGGTTTAGACTGTCATGTTTTCAC---ATCCAAAGATCTAAATTTCATCAATTACAAAA----GTGACCAAAACCATGTGCATAATTATGAAAACAGTATACGGAAA--AAA--AAAC-A-GCAGTTT----TT-GTCATTCGTGCAAACGGTTTATTTATATCCAGGTCA------AGTTCTCAGTTTGACAAATATTTACGTTATACATTTGGCTTTGGAAATACCTTGTA------ATGTGTGTTAAACTTGCTATT------CTTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGA-T-TTT-TTCTAAATTGTTTT-ACTCTGGGAAATCGACAGAGCTTGTTTATCTTTCGATTTTATATTGATGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGATTTGTCTCTTAATAACATTTTACACTAAACGATCATTCTCATTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTT-AAATAAACTTGCGGTGCCATTGATGCCTTGCAT
gi|7 : gacaacAAGCGAAAGTTCACATGCAACAATGA-CATCATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTG------TCAC---ATCCGATGATCTAAATTTCATCAATTACACAA----GTAACCAAAACCA---------------AAATAA-------AAG--AAAT-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATAGCCAGATCAAGTTAAAGCTCTGAGTTCGACAAATATTTCAGCAATAAATTTGGCTTTGGAAATGCCTTGT----------------------------T--ATTCGTGTT----T-GAGAAAATGTATCAAACATCACACAATCCTTGACGTGGTAACT-TTT-TTCTA----TTTTT-ACTCTGGTAAA----------TCGTTTATCTTCCGATTTTATTTTTTTGGCTTTCCTACATTTCATCTATTTGAC--------------------CTAGATCATGCTAACC-TACATGTTCAAAATGAAT-TTTTGTCTCTTGATAAGATTTTACACT-----TTCATTCTCCGATGTTACATATTCAT-AAAATA--AACATACACAGCAAACTCATTGTTG-----TTAAAACAAACTTGCGGCAACATTGCTACCTTGCATcaatctttgt
gi|8 : AATTGAAAGTTCACATGCAGAAATGAATATGACGACTAATACAACC----------------ATTTTCGG-TGTTGGCTTAGTCAGTGAGTTACTCAC---ATCCAAAGATATAAATTTCATCAATTACACAA----GTGACTAAAACCATGTACATGATTATCAAAATAGTATACGAAAGA-AAA--T--C-A-GCAGCTT----TT-GACATTCATGCGAGCGGTAA--TTATATCCAGATCAGGTTAACGTTCTCCTTTCGACAAATATTTCTGTAATAAATCTGGCTTTGGAAATGCCTTGTA------ATGTGTGTTCAACATG----TT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCATACAATCCTTGAAGTGGTGAC--TTG-TTCTA--GGTTTAT-ACACTGGTAAA-CAACAGAACTCGTTTATCTTTCTATTTTATATTTTTG----TCCT--------TCTATTTTAC--------------------CTAGATCAAGCCAGCCTTATATGTTTAAAATGATTGTTTTGTCTCTTTATAACAGTTTACACTGAACGGTCATTCTCTcaatctttgtcttg
gi|9 : aagtagaaagaatgtaaacAAGTGAAAATTCACGTGCGACAATGTATATGATGACTTATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTAATGTACTCAC---ATCTAATGTTCTAAATTTAATCAATTACATAA----ATGACCAAAATCATTTACATGATTATGAAAATAGTATACGGAAG--AAAC-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATATCCAGATCAGGCTAAAATTCTCCTTTTTACAAATATTTCTGTAATAAATTTGACTTTGGAAATTCTTTGTA------ATGTGTGTTCAACTTG-TA-----ATTCGTGTTAAAGTAAAGTAAAGGTATGAAACATCACACAATCCTTGACGTGATAA-T-TTT-TTATT--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTAT------A--------TTTTGGCTTTCCTACATCTCATTTA
blockSeqs : CTTTACTATTGTAACT A G TGC TTAA G AA CCC C A AAAA T A C AT C ATATATA TTATCTGTATT AAAG A A A TT AA . TTACATCTCAATTATTTTAC A AC
blockSeqs : . . T . . G A AAA C . . . A T . C A TTATTA . . A . T . . . . .
blockSeqs : . . T . . G . CT . . . . G T . T A TTATT . . A . A . . . . .
blockSeqs : . . T . . G . AC . . . . A C . T A TTATT . . A . T . . . . .
blockSeqs : . . G . . T . TC . . . . T C . C A TTATT . . A . T . . . . .
blockSeqs : . . G . . G . CC . . . . G A . T T TTATT . . A . A . . . . .
blockSeqs : . . T . . G . C . . . . T C . A A TTATT . . A . T . . . . .
blockSeqs : . . G . . G . C . . . . G G . T T TTTTT . . A . A . . . . .
blockSeqs : . . T . . C . A . . . . A C . C A TTATT . . A . T . . . . .
blockSeqs : . . G . . G . C . . . . A A . T G CTATT . . A . A . . . . .
blockSeqs : . . . . . . . C . . . . A C . T A TTATT . . . . A . . . . .
blockSeqs : . . . . . . . T . . . . G G . T A TAATT . . . . T . . . . .
blockSeqs : A C . T A TATT . . . . T . . . .
blockSeqs : . . TTT . . . . G . . . .
blockSeqs : . . . . . . . T . . . .
blockSeqCons : TTATT******
originalCons : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATTT--ATTCGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
finalCons : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTGTTATT------CGTGTT----T-GAGAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CACATGAAATTGAGTCACCAAGTGAACGTTAGTTTATACTAATTATTTTTA
Alignments
lowQualScore : 2222222222222222 11111 22222222222222222222
lowQualScore : 0000000000000000 3 3 555 6666 1 44 88888 6 3 6666 3 1 1 33 0 5 777777 5555 5555 2 5555 3 2 2 555 2 55555555555555555555 0 0 2 33 0
lowQualScore : ................ . . ... .... . .. ..... . . .... . . . .. . . ...... .... .... . .... . . . ... . .................... . . . .. .
lowQualScore : 4444444444444444 1 9 444 5555 5 22 99999 2 1 5555 1 6 2 99 2 2 222222 3333 3333 5 3333 2 5 5 111 5 00000000000000000000 3 3 5 44 3
consensus : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTG----TTATTCGTGTT----T-GA----GAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
Reference ( family-4002 ) : AAGTGAAAGTTCACATGCAACAATGAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTACACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGACCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------ATGTGTGTTCAACTTG----TTATTCGTGTT----T-GA----GAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGACT-TTT-TTCTA--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCCATTGATGCCTTGCAT
gi|1 : AAGTGAAAGTTCACATGCAACAATGAATATGACGACCGATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTATTCAC---ATCTAATGATCTAAATATCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATCAAAATAGTATACGGAGC--AAA--C--C-A-GCAGCTT----TT-GTCATTCATGCGAACGGTTT--TTATATCCAAACCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATGTGGCTTTGGAAATGCCTTGTT------ATGTGTGTTCACCTTGTTATTTATTCGTGTT----T-GA----GAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGATT-TTT-TTCGA--TTTTTTTAACTCTGGTAAAACAATAGAACTCGTTTATCTTTCGATTTTATATTTTTGGCTTCCCTACATCTAATCGATTTTAC--------------------CCAGATCAAGCTAACTCTACATGTTCAAAATGATTGTTTTGTCTCTTGATAACATTTTACACTAAACGGTCATTCTTTGTTGGTACATATTTAT-AAAATA--TACATACAAAGCAAACTCATTATTGTTTCTTCAAATCAAACTTGCGGCGCCATTG
gi|10 : TCACATACAACAATGAATATAATGACTAATAAAACCCTTTACTATTGTAACTATTTTCGAATAC-GGTTAAGTCTGTGATGTACTCAC---ATCAAATGATATAAA-------------ACAA----GACACCAAAACCATGTACATGATTATGAAAATAGCAAACGGAAG--AAA--CT-C-A-ACAGCTT----TT-GTCATTCATGCAACCG-TTT--TTATATCCAGTTCAGGTTAAAGTTCTCCGTTCGACAAATATTTCTGTAATAAATTTGGCTTCG-AAATGC-TTGTA------ATGTGTGTTCAACTTG----TTATTCGTGTT----T-GC----GATAAGGTATCAAACGTCAAACAATCCTTGAAGTG---ACA-TTT-TT-TA--TTTATTT-ACGCTGGTAAATCGACAGAATTCGTTTATCTTTCGATTTTATATTTTTGGCTTTTCTTCATCTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTACATGTTCAAAATGATTGTTTcacacgtttgtattgtactgtt
gi|11 : AAGTGAAAGTTCACATGCAACAATGAATATGATAACCAATGAAACC----------------ATTTTAGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCAATAATATAAATTTCATCAATCACACAATTAAGTGACCAAAACCATGTACATGATTAT---AATAGTTTACGGAAG--AAA--C--CCA-GCAGCTTAAAATT-GTCATTTGTGCAATCGGTTT--TTATATCCAGATCAGGTTAAAGTTCTTAGTTCGACAAATATTTCTGTAATAAATTTGGCATCGGAAATGCCTTGTA------ATGTGTGTTCAACTTG----TTATTAGTGTT----T-GA----GAAAAGGTGC----CGTAACACAATTCTTGAAGTGGCGACT-TAA-TTATA---TTTTTT-ACTCCGATAAATCAATAGAACTCGTTTAACTTTCGATTTTATATATT
gi|12 : aagtagaaagaatgtaaacAAAGTTCTCCGTTCGGAAAATATTTCATCAATAAGTTTGGCTTTGGAAATGCCTCGTA------ATGTGTGTTGAAAGTG----TTATTCATGTT----C-AG----GAAAAGGTATCAAACATCACACAATCCTTGAAGTGGTGATT-GTT-TCCTA--TTTT-TT-ACTCTGGTTAATCGACATATCTCGTTTATTATTCAATTATATATTTTTGGGTTTCCTACATCTCAATTATTTTAC--------------------CTAGATCAAGCCAGCCTTACATGTTCAAAATGAGTGTTTTGTCTCTCGATAACTTTTTACACTAAACGGCAATTCTCTGTTGGTGTATATACAT-AAAATA--TACATATAAAGCAAACTCATTGTTGCTTCTTAAAAACAAACTTATGGCGCTATTGATTCATTGCAT
gi|13 : GTTCGATAAATATTTCTGTGATAAATTTGGCTTTGGAAATGCCCTGTA------ACGTGT--TTAACTTA----TTATTCGTGTT----T-GA----GATAAGGTGTCA----TTACAAAATCCTTGAAGTGGTGACT-TTTTTTCTA--TTTTTGT-ACTCTGGTCAATCGACAGAACTAGTTTATCTTTCGGTTTTATATTTTTGGCTTTCCTACATCTCATTTATTTTAC--------------------CTACAGCAAGCTAGCCTTACATGTTCAAAGTGATTGTTTTGTCTCTTGATAACGTTTTACACTAAAAGGCCATTCTCTTTTGGTACATATTCAGAAAAATA--AACATACAAAGGAAACTCAGTGTTATTTCGTTAAAACAAACTTGCGGCGCCATTGATACCTTGCATcaatatttttctt
gi|14 : TTCATGCGATCTATTT--TTATATCCACTTCAGGTTAAA-----------------TATTTCTGTAATAAAGTTGGCTT-GGAAATGCCTTGTT------ATGTGTGTTTAACTTG----TTATTCGTGTT----T-GA----GAAAATGTACAAAACATCACACAATCCTTGAAATGGTGACT-TTT-T-CTA--TTTT-------------GATTGACAGAACT------------------ATATTTTTGGTTTTCCTACATCTCATCTACTTTAC--------------------CTAGATCATGGTAGTCAAACATGTTCAAA-TGATTGTTTTGTCCTTTAATAACGTTTTACATTAAACGGTCATTCTCTGTCGATACATATTCAT-AAAATG--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAATCAAACTTGTGGCGCCATTGATGCCTTGCATcaatccttgtcttg
gi|15 : GGTTAAAGCTCTCTGTTCGATAAATATTTCTGTAATAAATTTGGCTTCGGAAATGCCTTGTA------A------------------------CGTGTT----T-GA----GAAAATATGTCA----TAACACAATCCTTAAAGTGGTAACT-TAA-TTCTA--TTGTTT--ACTCTGATATATCGATAGAACTCGTTTATCTTTTGATTTTACATTTTTGGCTTTCCTATATCTTATTTATTTTAC--------------------CTAAATCAAGC----CTTACCTGTTCAAAATGATTGTTTTGTCTCTTTATAACATTTTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACAAACAAAGCAAACTCATTGTTA-TTCTTTAAAACAAACTTGCcaaggttg
gi|16 : tttattccatttttagAAAGTTCACATGCAACAATGAATATGATAACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCGGTGATTTACTCACTGCAACCAATGATCTAAATTTCATTAATTACACCA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATATGGAAG--AAAA-C--C-A-GCAGCTT----TT-GGTATTTGTGCAACCAATTT--TTATATCCATATCCGGTTAAAGTTCTCTGTTTGACAAATATTTCTGAAATAAATTTGGCTTTAGAAATGTTTTCTT------TTGTGTGTTCAACTTG----TTATTCGTGTT----T-GA----GAAAATGTATCAAACATCACTCAATCCTTAAAGTGGTGACTATTT-CTCAA--TTATTTT-cttgcataaatctttgtcttg
gi|17 : gcaAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTGATTTACTCAC---ATCCATTGATCTAAATTTCATCATTTACACAA----GTGACCAAAACCATGTTTATGATTATGAAAAAAGTATATGGAAGAAAAA--C--C-A-GCAGCTT----TT-GTCATTCATGCTACCGGTTT--TTATATCCATATCAAGTT-AAGTTGTTCGTTCGGCAAATAGTTTTGTAAT
gi|18 : GATCATGCTAGCCTTATATGTTCAAAATGATT-TTTTGTCTCTTGGTAACATTTAAAACTAAACGGTTATTCTCTGTTGGTACATATTCAT-TAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACAAACATGTGGTACCATTGATGCCTTGCt
gi|19 : GCTATCCTTACATGTTCAAAATGATTGTTTTGTTTCTTAATAACATTTTACACTAAACTGTCATTCTCTGTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTCTCTTTGAAATAAACGTGCGGCGATAGTTATGCCTTGCATttcaatctttgtcat
gi|2 : ttAAGGGAAAGTTCACATGCAACAATGAATATAACGACCAATGAAACC----------------ATTTTCTG-TGTTGGTTTAGTCTGTGATGTACTCAC---ATCCAATGATCTAAATTTCATCATTTACACAA----GTGAACAAAACCATGTACATGATTATGAAAATAGTATACGG--G--AAACCC--C-A-GCAGCTT----TT-ATCATTCATGCGAACGGTTT--TTATATCCAGATCTCGTTTAAGTTCTCTGTTCGACAAATATTTTTGTTATAAATTTGGCTTAGGAAATGCTTTTTA------ATGTGCGTTCAACTTG----T--TTCGTGTT----T-GA----GAAAAGGTGT----CATAACACAATCTTTGAAATGGTGACT-TAA-TTCTA--TTGTTTT-ACTCTGATAAATCG--AGAACTCGTTTATCTTTCTATTATATATTTATGGTTTTCCTACATCTCATT-------------------------------GATCAAACTAGACTTACATGTTCAAAATGATTGTTTTGTCTCTTCATAACGTTTTGCACTAAACGGTCATTCTCTGTTGGTACACACTCAT-AAAATA--AACATACAAAGCAAACTCAATGTTGTTTCTTTAAAACAAACTTACGGCGCCATTGATGCCTTGCAtaatatttatct
gi|20 : aagtagaaagaatgtaaacCATTTTGCACTAAACGGTCGTTATCTGTTGGTTCATATCCAT-AAAATA--AACAAACTAAGCAAACTCATTGTTGTTTCTTTATAACAAACTTGCGGCGCCAATGATGCTTTGCATccaatctttgtcttg
gi|21 : ggTTTGTCTCTTAATAACGTTTTGCACTAAACGGTCATTCTCTGTCGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTTAAAACcaatctttg
gi|22 : TATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTATTTCTATAAAACAAAC
gi|3 : AAGTGAAAGTTCACATGCAATAATAAATATGATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCT--------------------AATGATCTAA-TGTCATCAATTACACAA----GTGAC-AAAACCATGTCCATGATTAATAAAATAGTATACGGAAG--AAA--A--C-AAGCAGTTT----TTTGTTATTCATTTTACCCGTTT--TTATATCCAGATCAGGTTAAAGTT-TCCATTCGACAAATATTTCTGTAATAAATTTGGCT--------------------------GTGTTTAACTTG----TTTTTCGTGTT----T-GA----GAAA-GCTATCAAACATTACACAATCCTTAAAGTGGTGATT-TTT-CTTTT--TTTTTTT-ACTCTGGTAACTCGGCAGAACTCGTTTATTTTTCGATTTTATATTTTTTAATTTCCTACATCTCTTTTATTTTAC--------------------CAAGATCAAGCTAGCCTTACATGTTAAAAA-AATAGCTTTGTCTTTTGATAACATTGTACACTAAACGGTCATTCTCTGTTGGTACATATTCAT-AAAAAAACAACATACAAAACAAATTCATTGTTGTTTCTTTAAAACAAACTTGCGGCGCTACTGACGCCTTGCATaatctgtcttgtttt
gi|4 : aagtagaaataatgtaaacATGACTATGATGACTA-TGAAACT----------------ACTTTCTA-TGTTGGTTTAGTCTGTGATGTACTCAT---GTTTAGTGATCTAAATTTCATCATTTACACAA----ATGACCAAAACCATTTACATGATTGTGAAAATAGTATACAGAAG--AAA--C--C----CAGCT-----------------GGGAGTGTTTA--TTATATCCAGATCAGGTTAAAGT-ATCCATTCCACACATATTATTGTAATAAATTTGGCTTTGGAAATTCCTTGTG------ATGTGTGTTCAACTTG----TTATTCATATT----T-GA----GAAAAGGTATCAAACATCACACAATCCTTGGAGTGGTGAC--TGT-ATCTG---TTTTTT-ACTGTGGAAAATCGACAGGACTCGTTTATCTTTCGATTTTATATTCTTAGCTTTCCTACATCTCAATTATTTTACTTACATCTCAATTATTTTACCTGAATCAAGCTAGCC-TACATGTTCAAAATGATTGTTTTGTCTCTTGATAAGATTTTACACTAAACGGTCATTTTCTATTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGATTCTTTAAAACAAACTTTTGAAGCCATTGATGCCTTGCATcaatctttgccttg
gi|5 : AAGTAAAAGTTCACATGCAACAATAAATATGATGATTTATGAAAAC----------------ATTTTCGA-TGTTGTTTTAGTCTGTGATTTACTCAC---ATCCAATGATCTAAATTTCATCAATTGCACAA----GTGACCAAAACCATGTACATGATTATGAAAATAGTATACGGAAG--AAA--C--CCA-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATGTGCAGATAAGGTTAAAGTTCTCTGTTCGAAAAATATTTCTGTAAAAGATTTGGCTTCGGAAATGCCTTGTATATATAATGTGTTTTCAACTTG----TTATCTGTATT----T-GACTGAGAAAAGGTGTCG----TAACACAATCCTTGAAGTGGTGACT-TAA-TTCTA--TTTCTCT-TCTCTGATAAATCGACAAAACTCGTTTATCTTTCGATTTTATATTTTTGGCATTCCTACATGTCATTTATTTTAC--------------------CCAGATCAAGCTAGCCTTATATGTTCAACATGATTGTTTTGTCTCTTAATAATATTTTACACAAAACGGTCATTCTCTGTTGGTAGATATTCAT-AAAATA--A----ACAAAGCAAACTAATcaacctttgtct
gi|6 : agtagaaaaaaggttaccACC----------------ATTTCCGA-TGTTGGTTTAGACTGTCATGTTTTCAC---ATCCAAAGATCTAAATTTCATCAATTACAAAA----GTGACCAAAACCATGTGCATAATTATGAAAACAGTATACGGAAA--AAA--AAAC-A-GCAGTTT----TT-GTCATTCGTGCAAACGGTTTATTTATATCCAGGTCA------AGTTCTCAGTTTGACAAATATTTACGTTATACATTTGGCTTTGGAAATACCTTGTA------ATGTGTGTTAAACTTG----CTATTCTTGTT----T-GA----GAAAATGTATCAAACATCACACAATCCTTGAAGTGGTGA-T-TTT-TTCTAAATTGTTTT-ACTCTGGGAAATCGACAGAGCTTGTTTATCTTTCGATTTTATATTGATGGCTTTCCTACATCTCATTTATTTTAC--------------------CTAGATCAAGCTAGCCTTACATGTTCAAAATGATTGATTTGTCTCTTAATAACATTTTACACTAAACGATCATTCTCATTTGGTACATATTCAT-AAAATA--AACATACAAAGCAAACTCATTGTTGTTTCTTT-AAATAAACTTGCGGTGCCATTGATGCCTTGCAT
gi|7 : gacaacAAGCGAAAGTTCACATGCAACAATGA-CATCATGACTAATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTG------TCAC---ATCCGATGATCTAAATTTCATCAATTACACAA----GTAACCAAAACCA---------------AAATAA-------AAG--AAAT-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATAGCCAGATCAAGTTAAAGCTCTGAGTTCGACAAATATTTCAGCAATAAATTTGGCTTTGGAAATGCCTTG----------------------------TTATTCGTGTT----T-GA----GAAAATGTATCAAACATCACACAATCCTTGACGTGGTAACT-TTT-TTCTA----TTTTT-ACTCTGGTAAA----------TCGTTTATCTTCCGATTTTATTTTTTTGGCTTTCCTACATTTCATCTATTTGAC--------------------CTAGATCATGCTAACC-TACATGTTCAAAATGAAT-TTTTGTCTCTTGATAAGATTTTACACT-----TTCATTCTCCGATGTTACATATTCAT-AAAATA--AACATACACAGCAAACTCATTGTTG-----TTAAAACAAACTTGCGGCAACATTGCTACCTTGCATcaatctttgt
gi|8 : AATTGAAAGTTCACATGCAGAAATGAATATGACGACTAATACAACC----------------ATTTTCGG-TGTTGGCTTAGTCAGTGAGTTACTCAC---ATCCAAAGATATAAATTTCATCAATTACACAA----GTGACTAAAACCATGTACATGATTATCAAAATAGTATACGAAAG--AAAA-T--C-A-GCAGCTT----TT-GACATTCATGCGAGCGGTAA--TTATATCCAGATCAGGTTAACGTTCTCCTTTCGACAAATATTTCTGTAATAAATCTGGCTTTGGAAATGCCTTGTA------ATGTGTGTTCAACATG----TTATTCGTGTT----T-GA----GAAAAGGTATCAAACATCATACAATCCTTGAAGTGGTGAC--TTG-TTCTA--GGTTTAT-ACACTGGTAAA-CAACAGAACTCGTTTATCTTTCTATTTTATATTTTTG----TCCT--------TCTATTTTAC--------------------CTAGATCAAGCCAGCCTTATATGTTTAAAATGATTGTTTTGTCTCTTTATAACAGTTTACACTGAACGGTCATTCTCTcaatctttgtcttg
gi|9 : aagtagaaagaatgtaaacAAGTGAAAATTCACGTGCGACAATGTATATGATGACTTATGAAACC----------------ATTTTCGA-TGTTGGTTTAGTCTGTAATGTACTCAC---ATCTAATGTTCTAAATTTAATCAATTACATAA----ATGACCAAAATCATTTACATGATTATGAAAATAGTATACGGAAG--AAAC-C--C-A-GCAGCTT----TT-GTCATTCATGCAACCGGTTT--TTATATCCAGATCAGGCTAAAATTCTCCTTTTTACAAATATTTCTGTAATAAATTTGACTTTGGAAATTCTTTGTA------ATGTGTGTTCAACTTG----TAATTCGTGTTAAAGTAAA----GTAAAGGTATGAAACATCACACAATCCTTGACGTGATAA-T-TTT-TTATT--TTTTTTT-ACTCTGGTAAATCGACAGAACTCGTTTAT------A--------TTTTGGCTTTCCTACATCTCATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CACATGAAATTGAGTCACCAAGTGAACGTTAGTTTATACTAATTATTTTTA