lowQualScore : 44444444444444 2222222222222222 55555555555555555555555555555555 1111111 4444444444444444444444 1111 4444444444 111 2 1 1 22 1
lowQualScore : 8 1 99999999999999 6 5 4444444444444444 3 5 9999 9 0 00000000000000000000000000000000 1 4444444 3333333333333333333333 8 7777 8 3 3333333333 2 777 1 3 3 0 0 6 8888 666 7777 3 11 2
lowQualScore : . . .............. . . ................ . . .... . . ................................ . ....... ...................... . .... . . .......... . ... . . . . . . .... ... .... . .. .
lowQualScore : 2 2 99999999999999 8 9 8888888888888888 0 4 4444 4 2 00000000000000000000000000000000 1 4444444 9999999999999999999999 2 0000 0 5 8888888888 2 555 2 3 3 8 8 0 5555 444 7777 6 00 1
consensus : TTGGAAGGCGAGCGTAG---CG----AA-GCCTTCCATAGCNATCGC-GCGGCCCG---AAGTACAATTTTGTTCTA----TAACCTTTGTTATACTGTTGACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGTA-GANA----------TCCAAA---TTTGATTTTATTGC-GAT-TTTTTTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
Reference ( gi|3 ) : TTAGAAGGCGAGCGTAG---TG----AATGTCTTTTATAGCGATCGT-ACGGCCCA---AAGTACAATTTTGTTATA----TAACATTTGTTATATTGTTAACAG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCTATAGCAGAGG----ACGTA-GATA----------TTCAAA---TTTGATGTTATTGC-GAT-TTTTTTTCTATCAAACAGAGAGCAGAACACTTCA----AA---TAT----GCGGTAGTC-AGCGCATACTATTTCCACTAAA
gi|2 : TTGGGAGGCGTGCGTTG---CG----AAAGCCTTCTATAGCGATCGT-GAGACCCA---AAGTACAATTTTGTTCTT----TAACCTTTGTTATACTTTTGACCG------C------AATTTCAT-TTCCTCCGACCGAAAGAA-------TAGTTCC---------------------AACTGTTTCAAAATGCAATTGCAATAGCAGAGG----AAGTA-GATA----------TCCAAA---TCTGATTTTATTGT-GAT-TACTGTTCTATCAAACAGAGAGCAAAACACTTAA----AA---AAT----GCCGTAGTC-AAAGCATACAATATCCACTAAA
gi|4 : tTTTGAAGGCAAGCGCAG---CG----AATGCCTTATATAGGAATCGT-GCGGCCCA---TAGTACAATTTTGTTCTA----TAAACTTTGTTATTCTATTGACCA------CGATTTCA------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTACCATAGCAGAGGATACACGTA-Ga
gi|1 : tTTGGGAGGCGAGCGAAGCTCTG----A----CTTCCTTAGCTGTCAT-GCAGCCCC---AG---CAATCT-GTTATA----CAAACTACGT-ATGGTAGGAACCG------CC-----A------TATTCATCCGACCGATAAAG-------TAG-TCC---------------------ACAACTTTCAACACGCATTTACCGTAGCAGAGG----ACGTATTATACAACAAAAGTTTCAAAGTTTTTTAT-TTATTGCGGATGTTTTTCTTTA-CAAAcagagagcaaaacacttcaaatatatatgcgatagtaaaaacatactatttccactaaaa
gi|7 : agcctttgtgtgtttccaaagtagattatcctctttgtcatatattgtgatattaacgctatatttctcgttttTTGGAAGGCGAGCGTAG---TGCNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN---NNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNN------N------N------N-TTCCTCCGACCAATAAAA-------TAGTTCT---------------------AGAAGTTTCAAAagttcaaaaatacgatacgggaagcatacactt
gi|5 : tttTTGGAAGGCAAGTAAAGCTCTG----A----CTTCCATAGCTGTCAT-GCAGCCCT---AA---CAATCT-GTTATAAAGGTAACGTATG--ACAG-G--AACCG------CC-----A------TATTCATCCAACCGATAAAG-------TAGTTC-----------------------AAAG
gi|6 : tgtcctgttgtcattatatacacataaccggtagtattcttcagtgttttGAAGGAGAGCGTAG---CG----AG-GT-TTCTAAAGTCATCAC-ATTGCCTATTCATG-ATGATTTTGTTCTA----TAACCTTTGTTATACTGT----AG------C------A------T-TTCCTCCGACCAATGAAATCTATTTTATTTCCTCTGACCAATGAAATAGTTCCAAAAGTTTAAAAGTGCAATTGgacgtattgtaccatagtttttttatttattgcggattttattctctataa
gi|12 : gGAAGGCGAGTGTAG---CG-----ATACCTTCCATAGGGATCATGATTG--TG---AGATATAATTTTGTCCTA----TAACCTTTt
gi|9 : ttttcgAAGGCGAGAACAG---AG----AG---CTTCTATAGCTATCGC-TGGG--------AGTACAATTGTATTATA----TAACGTTTGTTATACTGTTGACAG------CGATATTA------T-TTCGTCCTACCGATAAAA-------TAGTTtgaca
gi|13 : aTGTTCTA----TAACCTTTGTTTTACTGTTGATCG------CG-----A------T-TTCATTCGATCGATT----------TTATT---------------------------GCTTTAAAATGCAATTGCCATAACa
gi|8 : CATTT-TTGGACTGTTGATGGTGATTTC------A------T-TTCCTCTGACCCATAAAA-------TAGTTCC---------------------AAAAGTTTTAAAATGCAATTGCCATTGTAGTAG----ACGTA-GAGA----------TCCAAA---TTTGATTTT
gi|10 : ttatctGCAGAGG----ACGAA-GAAA----------TCCAAA---TTTGAATTTATTAC-GAT-TTTGTT-CTATCAAACAGAGAGCAAAACCAATGA----AA---TAT----GCGGTAGTC-AAAGCATAAAATTTCCATTAAA
gi|16 : tTTCTATCAAACAGAGAGCAAAACACTTCAGTTCAAATGTAT----TTGATAGTC-AAAGC-----ATTTCCACTAAAat
gi|17 : TCTATCGAACAGAGAGTAAAACACTTGA----AG---TA-------------C-AAAGCATACACTTTCCACTAAAat
gi|4 : aaAGCAGAGAGCAAAACACTTCA----AA---TATATATGCGATAGTA-AAAACATACTATTTCCACTAAA
gi|18 : ttttgaaggcaagcgcagcgaatgccttatataggaatcgtgcggcccatagtacaattttgttctataaactttgttattctattgaccacgatttcatttcctccgaccgataaaatagttccaaaagtttcaaaatgcaattaccatagcagaggatacacgtAGAACAAAACACTTCA----AA---TGT----GCTGGAGTC-AAAGCATACAATCTACACTAAAa
gi|19 : GAGCCAAACACTTCA----AA---TAT----GTGGTAGTT-AAAGCATACAATTTTCACTAAAat
gi|20 : tGCAAAAGACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCGCTAAAat
gi|21 : gcAAAACACTTCA----AA---TAT----GCAGAAGTA-AAAGCATACAATTTCCA-TAAAat
gi|22 : AACACTTCA----AA---TAT----GCAGTAGTCAAAAGCATACTATTTCCACTAAAaa
gi|25 : a---TAT----ATGGTAGTC-AAAGCATACAGTTTCCACTAAA
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AACCTCTTTGTGTTCCAAAATATCCCATTTGTTATTTGATTCAATCAAGGTTACGAACCCGTTGTACACTTGCACCCCATCCCG
Unaligned ( gi|14 ): GAGGGTAGCTAGGCTTCTATAGTCATCACATTGCCTGTTTTTGATTTTGTCCTTAAGATAAACTTTGTTATACTGTA
Unaligned ( gi|15 ): GAAACTTTCTACAGCTGTCATGTGGAGTACAGTTTTGTTCTTTAAGCCGATGTTATACTGTTGACCAAGATTT
Unaligned ( gi|23 ): GGAAGTCGAGCGTAGCGAGGCTTCTAGTTATCAGACTGCCTAT
Unaligned ( gi|24 ): ATTTGATTTTTATTTTTTTTTGTGATTTGTGTTTTATCAC
Alignments
lowQualScore : 222222222222222 2222222222222222 111111111 44444444444444444444 1111111 4444444444444444444444 1111 2222222222 11111 222
lowQualScore : 777777777777777 4 1 1 1111111111111111 000000000 3 0 3 0 11111111111111111111 8 3333333 0000000000000000000000 4444 1111111111 1 66666 333 7 8 3 7777 555 6666 3
lowQualScore : ............... . . . ................ ......... . . . . .................... . ....... ...................... .... .......... . ..... ... . . . .... ... .... .
lowQualScore : 666666666666666 4 0 2 3333333333333333 333333333 3 7 6 1 11111111111111111111 0 0000000 7777777777777777777777 2222 8888888888 0 77777 333 8 0 5 1111 444 5555 1
consensus : TTGGAAGGCGAGCGTAGC---G-----AG-GCCTTCTATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTTTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
Reference ( family-3899 ) : TTGGAAGGCGAGCGTAGC---G-----AA-GCCTTCCATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTTTTTTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
gi|1 : TTGGGAGGCGAGCGAAGCTCTG-----A----CTTCCTTAGCTGTCATG--CAGCCCC---AG---CAATCT-GTTAT----A----CAA-ACTACGT-ATGGTAGGA-ACCG------CC-----A------TATTCATCCGACCGATAAAG-------TAGT-CC---------------------ACAACTTTCAACACGCATTTACCGTAGCAGAGG----ACGT---ATTATACAACAAAAGTTTCAAAGTTTTTTA-TTTAT-TGCGGATGTTTTTCT-TTA---------CAAA--AGTTCA----AA---AAT----ACGATACGG-GAAGCATACACTT
gi|10 : agcctttgtgtgtttccaaagtagattatcctctttgtcatatattgtgatattaacgctatatttctcgttttGCAGAGG----ACGA---A------GAAA-----TCCAAA---TTTGAATTTAT-TACGATTTTGTT-CTATCAAACAGAGAGCAAAACCAATGA----AA---TAT----GCGGTAGTC-AAAGCATAAAATTTCCATTAAA
gi|12 : tTCGGAAGGCGAGTGTAGC---G-----AT-ACCTTCCATAGGGATCATGATTG---TG---AGATATAATTTTGTCCT----A----TAA-CCTTTat
gi|13 : tttTGTTCT----A----TAA-CCTTTGTTTTACTGTTG-ATCG------CG-----A------T-TTCATTCGATCGAT--------------TTT-----------------------ATTGCTTTAAAATGCAATTGCCATAACtgaca
gi|14 : GAGGGTAGC---T-----AG-GC-TTCTATAGTCATCACA--TTGCCTG---TTTT-TGATTTTGTCCTTAAGA----TAA-ACTTTGTTATACTGT
gi|15 : ---G-----AA-ACTTTCTACAGCTGTCATG--TGG--------AGTACAGTTTTGTTCT----T----TAAGCCGATGTTATACTGTTG-ACCa
gi|16 : TTCTATCAAACAGAGAGCAAAACACTTCAGTTCAAATGTAT----TTGATAGTC-AAAGC-----ATTTCCACTAAAaagattt
gi|17 : TCTATCGAACAGAGAGTAAAACACTTGA----AG---TA-------------C-AAAGCATACACTTTCCACTAAAat
gi|18 : aaAGAACAAAACACTTCA----AA---TGT----GCTGGAGTC-AAAGCATACAATCTACACTAAA
gi|19 : GAGCCAAACACTTCA----AA---TAT----GTGGTAGTT-AAAGCATACAATTTTCACTAAAat
gi|2 : tTTGGGAGGCGTGCGTTGC---G-----AAAGCCTTCTATAGCGATCGTG--AGACCCA---AAGTACAATTTTGTTCT----T----TAA-CCTTTGTTATACTTTTG-ACCG------C------AATTTCAT-TTCCTCCGACCGAAAGAA-------TAGTTCC---------------------AACTGTTTCAAAATGCAATTGCAATAGCAGAGG----AAGT---A------GATA-----TCCAAA---TCTGATTTTAT-TGTGATTACTGTTCTATCAAACAGAGAGCAAAACACTTAA----AA---AAT----GCCGTAGTC-AAAGCATACAATATCCACTAAAat
gi|20 : tGCAAAAGACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCGCTAAAa
gi|21 : gcAAAACACTTCA----AA---TAT----GCAGAAGTA-AAAGCATACAATTTCCA-TAAAat
gi|22 : AAACACTTCA----AA---TAT----GCAGTAGTCAAAAGCATACTATTTCCACTAAAaa
gi|23 : GGAAGTCGAGCGTAGC---G-----AG-G-CTTC--TAGTTATC
gi|25 : ---TAT----ATGGTAGTC-AAAGCATACAGTTTCCACTAAAagactgcctat
gi|3 : TTAGAAGGCGAGCGTAGT---G-----AATGTCTTTTATAGCGATCGTA--CGGCCCA---AAGTACAATTTTGTTAT----A----TAA-CATTTGTTATATTGTTA-ACAG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCTATAGCAGAGG----ACGT---A------GATA-----TTCAAA---TTTGATGTTAT-TGCGATTTTTTTTCTATCAAACAGAGAGCAGAACACTTCA----AA---TAT----GCGGTAGTC-AGCGCATACTATTTCCACTAAAatg
gi|4 : TTTGAAGGCAAGCGCAGC---G-----AATGCCTTATATAGGAATCGTG--CGGCCCA---TAGTACAATTTTGTTCT----A----TAA-ACTTTGTTATTCTATTG-ACCA------CGATTTCA------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTACCATAGCAGAGGATACACGTAGCA------GAGA-----GCAAAACACTTCAAATATATATGCGAT
gi|4 : tAGCAGAGAGCAAAACACTTCA----AA---TATATATGCGATAGTA-AAAACATACTATTTCCACTAAAagtaaaaacatactatttccactaaaa
gi|5 : ttttgaaggcaagcgcagcgaatgccttatataggaatcgtgcggcccatagtacaattttgttctataaactttgttattctattgaccacgatttcatttcctccgaccgataaaatagttccaaaagtttcaaaatgcaattaccatagcagaggatacacgtTTGGAAGGCAAGTAAAGCTCTG-----A----CTTCCATAGCTGTCATG--CAGCCCT---A---ACAA-TCTGTTAT----AAAGGTAA-CGTATG----ACAG--GAACCGC-----C------A------TATTCATCCAACCGATAAAG-------TAGTTC-----------------------AAAGa
gi|6 : tgtcctgttgtcattatatacacataaccggtagtattcttcagtgttttGGAAGGAGAGCGTAGC---G-----AG-GT-TTCTAAAGTCATCACA--TTGCCTATTCATG-ATGATTTTGTTCT----A----TAA-CCTTTGTTATACTGT---A--G------C------A------T-TTCCTCCGACCAATGAAATCTATTTTATTTCCTCTGACCAATGAAATAGTTCCAAAAGTTTAAAAGTGCAATTGgacgtattgtaccatagtttttttatttattgcggattttattctctataa
gi|7 : TTGGAAGGCGAGCGTAGT---GCNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNN---NNNNNNNNNNNNNNNNN----N----NNN-NNNNNNNNNNNNNNNNN-NNNN------N------N------N-TTCCTCCGACCAATAAAA-------TAGTTCT---------------------AGAAGTTTCAAAt
gi|8 : tttACTGTTG-ATGGTGATTTC------A------T-TTCCTCTGACCCATAAAA-------TAGTTCC---------------------AAAAGTTTTAAAATGCAATTGCCATTGTAGTAG----ACGT---A------GAGA-----TCCAAA---TTTGATTTT
gi|9 : ttatctcatttttggAAGGCGAGAACAGA---G-----AG---CTTCTATAGCTATCGCT--GGG--------AGTACAATTGTATTAT----A----TAA-CGTTTGTTATACTGTTG-ACAG------CGATATTA------T-TTCGTCCTACCGATAAAA-------TAGTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACCTCTTTGTGTTCCAAAATATCCCATTTGTTATTTGATTCAATCAAGGTTACGAACCCGTTGTACACTTGCACCCCATCCCG
Unaligned ( gi|24 ): ATTTGATTTTTATTTTTTTTTGTGATTTGTGTTTTATCAC
Alignments
lowQualScore : 11111111111 2222222222222222 111111111 44444444444444444444 1111111 4444444444444444444444 1111 2222222222 11111 222 1
lowQualScore : 99999999999 1 1 1111111111111111 000000000 3 0 3 0 11111111111111111111 8 3333333 0000000000000000000000 4444 1111111111 1 66666 333 7 8 0 3 7777 555 6666 3
lowQualScore : ........... . . ................ ......... . . . . .................... . ....... ...................... .... .......... . ..... ... . . . . .... ... .... .
lowQualScore : 00000000000 0 2 3333333333333333 333333333 3 7 6 1 11111111111111111111 0 0000000 7777777777777777777777 2222 8888888888 0 77777 333 8 0 8 0 1111 444 5555 1
consensus : TTGGAAGGCGAGCGTAGCG-----AN-GCCTTCTATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
Reference ( family-3899 ) : TTGGAAGGCGAGCGTAGCG-----AG-GCCTTCTATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTTTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
gi|1 : TTGGGAGGCGAGCGAAGCT-----CT-GACTTCCTTAGCTGTCATG--CAGCCCC---AG---CAATCT-GTTAT----A----CAA-ACTACGT-ATGGTAGGA-ACCG------CC-----A------TATTCATCCGACCGATAAAG-------TAGT-CC---------------------ACAACTTTCAACACGCATTTACCGTAGCAGAGG----ACGT---ATTATACAACAAAAGTTTCAAAGTTTTTTA-TTTAT-TGCGGATGTTTTTCT-TTA---------CAAA--AGTTCA----AA---AAT----ACGATACGG-GAAGCATACACTT
gi|10 : agcctttgtgtgtttccaaagtagattatcctctttgtcatatattgtgatattaacgctatatttctcgttttGCAGAGG----ACGA---A------GAAA-----TCCAAA---TTTGAATTTAT-TACGATT-TTGTTCTATCAAACAGAGAGCAAAACCAATGA----AA---TAT----GCGGTAGTC-AAAGCATAAAATTTCCATTAAA
gi|12 : tTCGGAAGGCGAGTGTAGCG-----AT-ACCTTCCATAGGGATCATGATTG---TG---AGATATAATTTTGTCCT----A----TAA-CCTTTat
gi|13 : tttTGTTCT----A----TAA-CCTTTGTTTTACTGTTG-ATCG------CG-----A------T-TTCATTCGATCGAT--------------TTT-----------------------ATTGCTTTAAAATGCAATTGCCATAACtgaca
gi|14 : GAGGGTAGCT-----AG-GC-TTCTATAGTCATCACA--TTGCCTG---TTTT-TGATTTTGTCCTTAAGA----TAA-ACTTTGTTATACTGT
gi|15 : G-----AA-ACTTTCTACAGCTGTCATG--TGG--------AGTACAGTTTTGTTCT----T----TAAGCCGATGTTATACTGTTG-ACCa
gi|16 : TTCTATCAAACAGAGAGCAAAACACTTCAGTTCAAATGTAT----TTGATAGTC-AAAGC-----ATTTCCACTAAAaagattt
gi|17 : TCTATCGAACAGAGAGTAAAACACTTGA----AG---TA-------------C-AAAGCATACACTTTCCACTAAAat
gi|18 : aaAGAACAAAACACTTCA----AA---TGT----GCTGGAGTC-AAAGCATACAATCTACACTAAA
gi|19 : GAGCCAAACACTTCA----AA---TAT----GTGGTAGTT-AAAGCATACAATTTTCACTAAAat
gi|2 : tTTGGGAGGCGTGCGTTGCG-----AAAGCCTTCTATAGCGATCGTG--AGACCCA---AAGTACAATTTTGTTCT----T----TAA-CCTTTGTTATACTTTTG-ACCG------C------AATTTCAT-TTCCTCCGACCGAAAGAA-------TAGTTCC---------------------AACTGTTTCAAAATGCAATTGCAATAGCAGAGG----AAGT---A------GATA-----TCCAAA---TCTGATTTTAT-TGTGATTACTGTTCTATCAAACAGAGAGCAAAACACTTAA----AA---AAT----GCCGTAGTC-AAAGCATACAATATCCACTAAAat
gi|20 : tGCAAAAGACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCGCTAAAa
gi|21 : gcAAAACACTTCA----AA---TAT----GCAGAAGTA-AAAGCATACAATTTCCA-TAAAat
gi|22 : AAACACTTCA----AA---TAT----GCAGTAGTCAAAAGCATACTATTTCCACTAAAaa
gi|23 : GGAAGTCGAGCGTAGCG-----AG-G-CTTC--TAGTTATC
gi|25 : ---TAT----ATGGTAGTC-AAAGCATACAGTTTCCACTAAAagactgcctat
gi|3 : TTAGAAGGCGAGCGTAGTG-----AATGTCTTTTATAGCGATCGTA--CGGCCCA---AAGTACAATTTTGTTAT----A----TAA-CATTTGTTATATTGTTA-ACAG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCTATAGCAGAGG----ACGT---A------GATA-----TTCAAA---TTTGATGTTAT-TGCGATTTTTTTTCTATCAAACAGAGAGCAGAACACTTCA----AA---TAT----GCGGTAGTC-AGCGCATACTATTTCCACTAAAatg
gi|4 : TTTGAAGGCAAGCGCAGCG-----AATGCCTTATATAGGAATCGTG--CGGCCCA---TAGTACAATTTTGTTCT----A----TAA-ACTTTGTTATTCTATTG-ACCA------CGATTTCA------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTACCATAGCAGAGGATACACGTAGCA------GAGA-----GCAAAACACTTCAAATATATATGCGAT
gi|4 : tAGCAGAGAGCAAAACACTTCA----AA---TATATATGCGATAGTA-AAAACATACTATTTCCACTAAAagtaaaaacatactatttccactaaaa
gi|5 : ttttgaaggcaagcgcagcgaatgccttatataggaatcgtgcggcccatagtacaattttgttctataaactttgttattctattgaccacgatttcatttcctccgaccgataaaatagttccaaaagtttcaaaatgcaattaccatagcagaggatacacgtTTGGAAGGCAAGTAAAGCT-----CT-GACTTCCATAGCTGTCATG--CAGCCCT---A---ACAA-TCTGTTAT----AAAGGTAA-CGTATG----ACAG--GAACCGC-----C------A------TATTCATCCAACCGATAAAG-------TAGTTC-----------------------AAAGa
gi|6 : tgtcctgttgtcattatatacacataaccggtagtattcttcagtgttttGGAAGGAGAGCGTAGCG-----AG-GT-TTCTAAAGTCATCACA--TTGCCTATTCATG-ATGATTTTGTTCT----A----TAA-CCTTTGTTATACTGT---A--G------C------A------T-TTCCTCCGACCAATGAAATCTATTTTATTTCCTCTGACCAATGAAATAGTTCCAAAAGTTTAAAAGTGCAATTGgacgtattgtaccatagtttttttatttattgcggattttattctctataa
gi|7 : TTGGAAGGCGAGCGTAGTGCNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNN---NNNNNNNNNNNNNNNNN----N----NNN-NNNNNNNNNNNNNNNNN-NNNN------N------N------N-TTCCTCCGACCAATAAAA-------TAGTTCT---------------------AGAAGTTTCAAAt
gi|8 : tttACTGTTG-ATGGTGATTTC------A------T-TTCCTCTGACCCATAAAA-------TAGTTCC---------------------AAAAGTTTTAAAATGCAATTGCCATTGTAGTAG----ACGT---A------GAGA-----TCCAAA---TTTGATTTT
gi|9 : ttatctcatttttggAAGGCGAGAACAGAG-----AG---CTTCTATAGCTATCGCT--GGG--------AGTACAATTGTATTAT----A----TAA-CGTTTGTTATACTGTTG-ACAG------CGATATTA------T-TTCGTCCTACCGATAAAA-------TAGTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACCTCTTTGTGTTCCAAAATATCCCATTTGTTATTTGATTCAATCAAGGTTACGAACCCGTTGTACACTTGCACCCCATCCCG
Unaligned ( gi|24 ): ATTTGATTTTTATTTTTTTTTGTGATTTGTGTTTTATCAC
Alignments
lowQualScore : 11111111111 2222222222222222 111111111 44444444444444444444 1111111 4444444444444444444444 1111 2222222222 11111 222 1
lowQualScore : 77777777777 1 1 1111111111111111 000000000 3 0 3 0 11111111111111111111 8 3333333 0000000000000000000000 4444 1111111111 1 66666 333 7 8 0 1 7777 555 6666 3
lowQualScore : ........... . . ................ ......... . . . . .................... . ....... ...................... .... .......... . ..... ... . . . . .... ... .... .
lowQualScore : 55555555555 0 2 3333333333333333 333333333 3 7 6 1 11111111111111111111 0 0000000 7777777777777777777777 2222 8888888888 0 77777 333 8 0 8 0 1111 444 5555 1
consensus : TTGGAAGGCGAGCGTAGCG-----AN-GCCTTCTATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
Reference ( family-3899 ) : TTGGAAGGCGAGCGTAGCG-----AN-GCCTTCTATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
gi|1 : TTGGGAGGCGAGCGAAGCT-----CT-GACTTCCTTAGCTGTCATG--CAGCCCC---AG---CAATCT-GTTAT----A----CAA-ACTACGT-ATGGTAGGA-ACCG------CC-----A------TATTCATCCGACCGATAAAG-------TAGT-CC---------------------ACAACTTTCAACACGCATTTACCGTAGCAGAGG----ACGT---ATTATACAACAAAAGTTTCAAAGTTTTTTA-TTTAT-TGCGGATGTTTTTCT-TTA---------CAAA--AGTTCA----AA---AAT----ACGATACGG-GAAGCATACACTT
gi|10 : agcctttgtgtgtttccaaagtagattatcctctttgtcatatattgtgatattaacgctatatttctcgttttGCAGAGG----ACGA---A------GAAA-----TCCAAA---TTTGAATTTAT-TACGATT-TTGTTCTATCAAACAGAGAGCAAAACCAATGA----AA---TAT----GCGGTAGTC-AAAGCATAAAATTTCCATTAAA
gi|12 : tTCGGAAGGCGAGTGTAGCG-----AT-ACCTTCCATAGGGATCATGATTG---TG---AGATATAATTTTGTCCT----A----TAA-CCTTTat
gi|13 : tttTGTTCT----A----TAA-CCTTTGTTTTACTGTTG-ATCG------CG-----A------T-TTCATTCGATCGAT--------------TTT-----------------------ATTGCTTTAAAATGCAATTGCCATAACtgaca
gi|14 : GAGGGTAGCT-----AG-GC-TTCTATAGTCATCACA--TTGCCTG---TTTT-TGATTTTGTCCTTAAGA----TAA-ACTTTGTTATACTGT
gi|15 : G-----AA-ACTTTCTACAGCTGTCATG--TGG--------AGTACAGTTTTGTTCT----T----TAAGCCGATGTTATACTGTTG-ACCa
gi|16 : TTCTATCAAACAGAGAGCAAAACACTTCAGTTCAAATGTAT----TTGATAGTC-AAAGC-----ATTTCCACTAAAaagattt
gi|17 : TCTATCGAACAGAGAGTAAAACACTTGA----AG---TA-------------C-AAAGCATACACTTTCCACTAAAat
gi|18 : aaAGAACAAAACACTTCA----AA---TGT----GCTGGAGTC-AAAGCATACAATCTACACTAAA
gi|19 : GAGCCAAACACTTCA----AA---TAT----GTGGTAGTT-AAAGCATACAATTTTCACTAAAat
gi|2 : tTTGGGAGGCGTGCGTTGCG-----AAAGCCTTCTATAGCGATCGTG--AGACCCA---AAGTACAATTTTGTTCT----T----TAA-CCTTTGTTATACTTTTG-ACCG------C------AATTTCAT-TTCCTCCGACCGAAAGAA-------TAGTTCC---------------------AACTGTTTCAAAATGCAATTGCAATAGCAGAGG----AAGT---A------GATA-----TCCAAA---TCTGATTTTAT-TGTGATTACTGTTCTATCAAACAGAGAGCAAAACACTTAA----AA---AAT----GCCGTAGTC-AAAGCATACAATATCCACTAAAat
gi|20 : tGCAAAAGACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCGCTAAAa
gi|21 : gcAAAACACTTCA----AA---TAT----GCAGAAGTA-AAAGCATACAATTTCCA-TAAAat
gi|22 : AAACACTTCA----AA---TAT----GCAGTAGTCAAAAGCATACTATTTCCACTAAAaa
gi|23 : GGAAGTCGAGCGTAGCG-----AG-G-CTTC--TAGTTATC
gi|25 : ---TAT----ATGGTAGTC-AAAGCATACAGTTTCCACTAAAagactgcctat
gi|3 : TTAGAAGGCGAGCGTAGTG-----AATGTCTTTTATAGCGATCGTA--CGGCCCA---AAGTACAATTTTGTTAT----A----TAA-CATTTGTTATATTGTTA-ACAG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCTATAGCAGAGG----ACGT---A------GATA-----TTCAAA---TTTGATGTTAT-TGCGATTTTTTTTCTATCAAACAGAGAGCAGAACACTTCA----AA---TAT----GCGGTAGTC-AGCGCATACTATTTCCACTAAAatg
gi|4 : TTTGAAGGCAAGCGCAGCG-----AATGCCTTATATAGGAATCGTG--CGGCCCA---TAGTACAATTTTGTTCT----A----TAA-ACTTTGTTATTCTATTG-ACCA------CGATTTCA------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTACCATAGCAGAGGATACACGTAGCA------GAGA-----GCAAAACACTTCAAATATATATGCGAT
gi|4 : tAGCAGAGAGCAAAACACTTCA----AA---TATATATGCGATAGTA-AAAACATACTATTTCCACTAAAagtaaaaacatactatttccactaaaa
gi|5 : ttttgaaggcaagcgcagcgaatgccttatataggaatcgtgcggcccatagtacaattttgttctataaactttgttattctattgaccacgatttcatttcctccgaccgataaaatagttccaaaagtttcaaaatgcaattaccatagcagaggatacacgtTTGGAAGGCAAGTAAAGCT-----CT-GACTTCCATAGCTGTCATG--CAGCCCT---A---ACAA-TCTGTTAT----AAAGGTAA-CGTATG----ACAG--GAACCGC-----C------A------TATTCATCCAACCGATAAAG-------TAGTTC-----------------------AAAGa
gi|6 : tgtcctgttgtcattatatacacataaccggtagtattcttcagtgttttGGAAGGAGAGCGTAGCG-----AG-GT-TTCTAAAGTCATCACA--TTGCCTATTCATG-ATGATTTTGTTCT----A----TAA-CCTTTGTTATACTGT---A--G------C------A------T-TTCCTCCGACCAATGAAATCTATTTTATTTCCTCTGACCAATGAAATAGTTCCAAAAGTTTAAAAGTGCAATTGgacgtattgtaccatagtttttttatttattgcggattttattctctataa
gi|7 : TTGGAAGGCGAGCGTAGTGCNNNNNN-NNNNNNNNNNNNNNNNNNN--NNNNNNN---NNNNNNNNNNNNNNNNN----N----NNN-NNNNNNNNNNNNNNNNN-NNNN------N------N------N-TTCCTCCGACCAATAAAA-------TAGTTCT---------------------AGAAGTTTCAAAt
gi|8 : tttACTGTTG-ATGGTGATTTC------A------T-TTCCTCTGACCCATAAAA-------TAGTTCC---------------------AAAAGTTTTAAAATGCAATTGCCATTGTAGTAG----ACGT---A------GAGA-----TCCAAA---TTTGATTTT
gi|9 : ttatctcatttttggAAGGCGAGAACAGAG-----AG---CTTCTATAGCTATCGCT--GGG--------AGTACAATTGTATTAT----A----TAA-CGTTTGTTATACTGTTG-ACAG------CGATATTA------T-TTCGTCCTACCGATAAAA-------TAGTT
blockSeqs : CNNNNNNNNN G T TTGCCTATTCATG TAAGA G A CAATTTCA A TCTATTT CTCTGACCAATGAAATAGTTCC ATAC AGCA A . CAC A A A G GTTC ATG ATAT A
blockSeqs : AAAGCC C C TTGCCTGTTTT AAAGG . . CGATTTCA . . C . A T . . T . T G . . . .
blockSeqs : AATGTC T T AGACCCAAAGT A . . TGATTTCA . . C . A T . . T . . T . . . .
blockSeqs : AATGCC G T CGGCCCAAAGT A . . CGATATTA . . C . A G . . A . . . . .
blockSeqs : ATACC T T CGGCCCATAGT T . . CGA . . T . A G . . T . . . .
blockSeqs : AAACT G T NNNNNNNNNNN T . . CCA . . C . . . .
blockSeqs : CTGAC A T ATTGTGAGAT A . . CA . . . . . . .
blockSeqs : AGGC T C CAGCCCTA A . . CA . . . . . . .
blockSeqs : AGGC C N TGGAGT A . . NN . . . . . .
blockSeqs : AGGT N C GGGAGT N . . . . . .
blockSeqs : AGC T A . . . . .
blockSeqs : . . .
blockSeqCons : CGGCCCATAGT***** CGATTCA************* A********* ***** ***
originalCons : TTGGAAGGCGAGCGTAGCG-----AN-GCCTTCTATAGCNATCGCG--CGGCCCG---AAGTACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCG------C------A------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
finalCons : TTGGAAGGCGAGCGTAGCG-----AN-GCCTTCTATAGCNATCGCGCGGCCCATAGT-----ACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCGCGATTCA-------------T-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGTA---------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACCTCTTTGTGTTCCAAAATATCCCATTTGTTATTTGATTCAATCAAGGTTACGAACCCGTTGTACACTTGCACCCCATCCCG
Unaligned ( gi|24 ): ATTTGATTTTTATTTTTTTTTGTGATTTGTGTTTTATCAC
Alignments
lowQualScore : 11111 1111111 111111111 333333 1111111 4444444444444444444444 1111 2222222222 11111 222 1
lowQualScore : 33333 1 66666 1 9999999 444 000000000 3 3 0 333333 8 3333333 0000000000000000000000 4444 1111111111 1 66666 333 7 8 0 1 7777 555 6666 3
lowQualScore : ..... . ..... . ....... ... ......... . . . ...... . ....... ...................... .... .......... . ..... ... . . . . .... ... .... .
lowQualScore : 33333 0 11111 3 5555555 555 333333333 3 6 1 666666 0 0000000 7777777777777777777777 2222 8888888888 0 77777 333 8 0 8 0 1111 444 5555 1
consensus : TTGGAAGGCGAGCGTAGCGAN-GCCTTCTATAGCNATCGCGCGGCCCAT----AG-TACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCGCGAT-T-CAT-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
Reference ( family-3899 ) : TTGGAAGGCGAGCGTAGCGAN-GCCTTCTATAGCNATCGCGCGGCCCAT----AG-TACAATTTTGTTCT----A----TAA-CCTTTGTTATACTGTTG-ACCGCGAT-T-CAT-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCCATAGCAGAGG----ACGT---A------GANA-----TCCAAA---TTTGATTTTAT-TGCGATTNTTNTTCTATCAAACAGAGAGCAAAACACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCACTAAA
gi|1 : TTGGGAGGCGAGCGAAGCTCT-GACTTCCTTAGCTGTCATGCAGCCC-C----AG---CAATCT-GTTAT----A----CAA-ACTACGT-ATGGTAGGA-ACCGC------CATATTCATCCGACCGATAAAG-------TAGT-CC---------------------ACAACTTTCAACACGCATTTACCGTAGCAGAGG----ACGT---ATTATACAACAAAAGTTTCAAAGTTTTTTA-TTTAT-TGCGGATGTTTTTCT-TTA---------CAAA--AGTTCA----AA---AAT----ACGATACGG-GAAGCATACACTT
gi|10 : agcctttgtgtgtttccaaagtagattatcctctttgtcatatattgtgatattaacgctatatttctcgttttGCAGAGG----ACGA---A------GAAA-----TCCAAA---TTTGAATTTAT-TACGATT-TTGTTCTATCAAACAGAGAGCAAAACCAATGA----AA---TAT----GCGGTAGTC-AAAGCATAAAATTTCCATTAAA
gi|12 : tTCGGAAGGCGAGTGTAGCGAT-ACCTTCCATAGGGATCATG------ATTGTGAGATATAATTTTGTCCT----A----TAA-CCTTTat
gi|13 : tttTGTTCT----A----TAA-CCTTTGTTTTACTGTTG-ATCGCG------AT-TTCATTCGATCGAT--------------TTT-----------------------ATTGCTTTAAAATGCAATTGCCATAACtgaca
gi|14 : GAGGGTAGCTAG-GC-TTCTATAGTCATCACATTGCCTGT----TT-T-TGATTTTGTCCTTAAGA----TAA-ACTTTGTTATACTGT
gi|15 : GAA-ACTTTCTACAGCTGTCATGTGG---------AG-TACAGTTTTGTTCT----T----TAAGCCGATGTTATACTGTTG-ACCAAGAT-T-a
gi|16 : TTCTATCAAACAGAGAGCAAAACACTTCAGTTCAAATGTAT----TTGATAGTC-AAAGC-----ATTTCCACTAAAt
gi|17 : TCTATCGAACAGAGAGTAAAACACTTGA----AG---TA-------------C-AAAGCATACACTTTCCACTAAAat
gi|18 : aaAGAACAAAACACTTCA----AA---TGT----GCTGGAGTC-AAAGCATACAATCTACACTAAA
gi|19 : GAGCCAAACACTTCA----AA---TAT----GTGGTAGTT-AAAGCATACAATTTTCACTAAAat
gi|2 : tTTGGGAGGCGTGCGTTGCGAAAGCCTTCTATAGCGATCGTGAGACCCAA----AG-TACAATTTTGTTCT----T----TAA-CCTTTGTTATACTTTTG-ACCGCAAT-TTCAT-TTCCTCCGACCGAAAGAA-------TAGTTCC---------------------AACTGTTTCAAAATGCAATTGCAATAGCAGAGG----AAGT---A------GATA-----TCCAAA---TCTGATTTTAT-TGTGATTACTGTTCTATCAAACAGAGAGCAAAACACTTAA----AA---AAT----GCCGTAGTC-AAAGCATACAATATCCACTAAAat
gi|20 : tGCAAAAGACTTCA----AA---TAT----GCGGTAGTC-AAAGCATACAATTTCCGCTAAAa
gi|21 : gcAAAACACTTCA----AA---TAT----GCAGAAGTA-AAAGCATACAATTTCCA-TAAAat
gi|22 : AAACACTTCA----AA---TAT----GCAGTAGTCAAAAGCATACTATTTCCACTAAAaa
gi|23 : GGAAGTCGAGCGTAGCGAG-G-CTTC--TAGTTATCAGACTGCCTAT----
gi|25 : ---TAT----ATGGTAGTC-AAAGCATACAGTTTCCACTAAA
gi|3 : TTAGAAGGCGAGCGTAGTGAATGTCTTTTATAGCGATCGTACGGCCCAA----AG-TACAATTTTGTTAT----A----TAA-CATTTGTTATATTGTTA-ACAGC-------AT-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTGCTATAGCAGAGG----ACGT---A------GATA-----TTCAAA---TTTGATGTTAT-TGCGATTTTTTTTCTATCAAACAGAGAGCAGAACACTTCA----AA---TAT----GCGGTAGTC-AGCGCATACTATTTCCACTAAAatg
gi|4 : TTTGAAGGCAAGCGCAGCGAATGCCTTATATAGGAATCGTGCGGCCCAT----AG-TACAATTTTGTTCT----A----TAA-ACTTTGTTATTCTATTG-ACCACGAT-TTCAT-TTCCTCCGACCGATAAAA-------TAGTTCC---------------------AAAAGTTTCAAAATGCAATTACCATAGCAGAGGATACACGTAGCA------GAGA-----GCAAAACACTTCAAATATATATGCGAT
gi|4 : tAGCAGAGAGCAAAACACTTCA----AA---TATATATGCGATAGTA-AAAACATACTATTTCCACTAAAagtaaaaacatactatttccactaaaa
gi|5 : ttttgaaggcaagcgcagcgaatgccttatataggaatcgtgcggcccatagtacaattttgttctataaactttgttattctattgaccacgatttcatttcctccgaccgataaaatagttccaaaagtttcaaaatgcaattaccatagcagaggatacacgtTTGGAAGGCAAGTAAAGCTCT-GACTTCCATAGCTGTCATGCAGCCC-T----A---ACAA-TCTGTTAT----AAAGGTAA-CGTATG----ACAG--GAACCGC------CATATTCATCCAACCGATAAAG-------TAGTTC-----------------------AAAGa
gi|6 : tgtcctgttgtcattatatacacataaccggtagtattcttcagtgttttGGAAGGAGAGCGTAGCGAG-GT-TTCTAAAGTCATCACATTGCCTATTC--AT-GATGATTTTGTTCT----A----TAA-CCTTTGTTATACTGTAG------------CAT-TTCCTCCGACCAATGAAATCTATTTTATTTCCTCTGACCAATGAAATAGTTCCAAAAGTTTAAAAGTGCAATTGgacgtattgtaccatagtttttttatttattgcggattttattctctataa
gi|7 : TTGGAAGGCGAGCGTAGTGCN-NNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNNNNNNNNNNNNN----N----NNN-NNNNNNNNNNNNNNNNN-NNNNNNNN-N-NNN-TTCCTCCGACCAATAAAA-------TAGTTCT---------------------AGAAGTTTCAAAt
gi|8 : tttACTGTTG-ATGGTGAT-TTCAT-TTCCTCTGACCCATAAAA-------TAGTTCC---------------------AAAAGTTTTAAAATGCAATTGCCATTGTAGTAG----ACGT---A------GAGA-----TCCAAA---TTTGATTTT
gi|9 : ttatctcatttttggAAGGCGAGAACAGAGAG---CTTCTATAGCTATCGCTGGG---------AG-TACAATTGTATTAT----A----TAA-CGTTTGTTATACTGTTG-ACAGCGATAT-TAT-TTCGTCCTACCGATAAAA-------TAGTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACCTCTTTGTGTTCCAAAATATCCCATTTGTTATTTGATTCAATCAAGGTTACGAACCCGTTGTACACTTGCACCCCATCCCG
Unaligned ( gi|24 ): ATTTGATTTTTATTTTTTTTTGTGATTTGTGTTTTATCAC