lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 1 666666666666666666666666666666666666666666666666666666666666 1 33333 33333 11 2222222 11111111 55555555555555555 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 111 1
lowQualScore : 4 0 6 2 6 8 5 2 2 5 999999999999999999999999999999999999999999999999999999999999 4 0 3 5 2 6 00000 00000 66 5 6 11 6 99 6 6666666 55 8 99999999 55555555555555555 777 2 3 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 6 6 6 7 999 7
lowQualScore : . . . . . . . . . . ............................................................ . . . . . . ..... ..... .. . . .. . .. . ....... .. . ........ ................. ... . . ................................................................................................................................ . . . . . ... .
lowQualScore : 0 0 7 5 7 3 0 0 4 3 222222222222222222222222222222222222222222222222222222222222 2 8 1 0 0 6 44444 00000 99 7 7 99 7 22 7 5555555 88 0 44444444 22222222222222222 555 5 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 0 7 0 000 0
consensus : GCNATGT-GCNAA-CTTTCACCGCAACTCAAACTCAACGCTCTAATT-----------NA----AA-A---TTCAAG------TCCGATTCCCA-----N---ATA-CTATACACTCCCGTGTAGCTGAAACATTTATCTAT-TCAACAGTACCTAC----NTTTTTT-----AA--TCCGT-TT-TGTATCGAAGAA-GTAC--CAGC-CGTCG------AAACGTTNAAAA-TATC-CCGA--TTTTTC-TA-C--AGT-GNAG-ATA---ANCCNGTCC--------------TCA----TAACTCNANACGGNTATTTTTCATGACTATACCCGGGTGTCANGATAGNCAGNCACCCCTTCC-----------------------AGTAA----------------ATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
Reference ( gi|2 ) : GCAA-GT-GCCAA-CATTTACTGAAGCTCAAACTCGACGCTCTAATT-----------CA----AA-----TTCAAA------TCCCATCCTCA-----A---ATA-CTATACACTCTCGTGTACCTAAAACATTTATCTAT-TCAATAGTACCTAC----ATTTTTT-----AA--TCCGT-TT-TGTATCGAAGAA-GTAC--CAGC-CGTCT------AAACGTTTGAAA-TATC-TCGA--TTTTTC-TA-C--AAT-CAAA-ATA---AGCCTGTCC--------------TC-----TA----TACACGGGTATT----ATGA----AC----GTGACACGATAAACAGCC------TC------------------------AGCAA----------------ATGCCACGATCAAAAAACCCTTCACGTTTTTAAAATGATGCCAAGAATAACAATTTCAT
gi|7 : GCAATGTCGCCAA-CTTTTACTGCAGCTCAAATTCAGTGCTCTAATC-----------CA----AACAC--TTCACA------TCTCATA-TCA-----AT--GTA-CTATACATTCTCGTGTAGCTAAAACATTGATCTAT-TCAACAGTACTT-C----GTTGTTTGTTTAAA--TCCAT-
gi|9 : aggGCTA-AT-GTCAAACTTTTACCGCAAC-CAAACTCAACGCTCTCATT-----------TA----AA--------AAA---------GA--ATCG-----A---GT--CTG---ATTCCAATGTGGTTAAATTATTTATCTAG-TCAACAGTACATAC----GGTTTcgggagatgtgacacaatctgtctgaa
gi|1 : aagg-GCCAT-CTTTTACTGCAGCTCAA------CATTCTAATT-----------CA----AACAA--TTCAAA------TCCCATCAGCA-----T---ATA-CCATACACACTCGTGAATCTAAAACATGTATCTAT-TCAACAGTACCTACTCTTCTTTTTA-----AA--TCCGT-TT-TGTAT---AGAA-GTAC--CAGT-CGTCA------AAACGTTGAAAA-TATC-CCAATTTTTTTT-TA-C--AAT-GTAG-ATA---GTCGTGTCC--------------TCAGTCTCA----AAAACAGTTATTTTTCATAACTATACCCGGGTATTAAGATAAACAGCCACCCCTTCCA----------------------AGTAAAGGAAGATAACAGCAAATGACACAACTAAGAAATCCTTCACGTTTATATAATGATAGTGAGAAAAACAAcgaactcttt
gi|15 : agggcactgtc-GCAAA-CTTTCACCGAAACTCAAACTCAACGCTCTAATT-----------AAAAT-AA-----TTCGAG------TCCGATTCCTA-----T---AAA-CTATACACT
gi|14 : cata-GCAAA-CATTCACAGCAACTCAAACTCAACGCTCTTATT-----------AA----AA--------GAATGTCTGTCCGATTCCCA-----T---AAA-CTATACACT
gi|6 : gcactgtc-GCAAA-CATTCACAGCCACCCAAACTCAACGCTTTAATT-----------AAAAATAA-----TTC-TG------TCCGATTCCCA-----T---ATA-CTATACACTACTGTGTGACTAGCCCCTGTGTTTAG-TC-----TACTTTC----TTGTCTT-----AA---CCAT-TCACATAT-----AA-GTACTTCGGCACGTCTGTAAAAAAATGTTT
gi|3 : agggcattgtcTTCACCACAACTTAAACTCAACGCT-TAATT-----------TA----AAAAACATCCAAG------TCCAATTCACATTTATA---A-A-CTTTTCACTCCCATGTAGCTGAAACATTTAT-----TCAACAATACCTAT-----TTTTCTGA---AA--TCCAT-TT-TGTATCAAAGAA-GTAT--CAGC-CATCG------AAAGGTTTAAAG-TATCATATA--ATTTTC--A-CCTAGT---AA-ATA---AGCCAGTCC--------------ttt
gi|13 : aattTTACCACAACTCAAACTGAATGCTCTATTT-----------AA----AAAAA--TTCGAG------TCCGATTCCCA-----T---TAA-CTATACACTagtcccaacaattattttacacaattatttacgggtattataaa
gi|10 : gataactgtcataaaccaAACTCAAACTAAGTGATCTAACTGCTCTTTTTCACA----AA-----TTTAAG------TCTGAT--TCA-----AGAAAAA-CTATACACTCCCATATAGCTGAAACATTTATCTATAT--ACAGTATCTACT---ATTTTAT-----AA--T
gi|5 : TCAAATTCGGCGCTCTAATT-----------TA----AA-----AT-AAA------TCGAGTCT--------G---ATGTCCATCAACTATT---TACTGGAAACAT----CTAT-TCAATGAT-CCTAT-----TTTTCT-----AAATTTCATATT-TGTGTTGAAGAA-TTAA--CACC-AATCT------TAACGTTGAAAA-TATC-CCAA--TATTacccg
gi|12 : ggtacagttgcacctttcccaacaatATTCCCA-----T---ATA-CTATACATTCTCATGTAGCTGAAACATTTATCCAT-CCTACAAGGCCTAT----TTTTTTTAAAA-AA--TCTGC-TT-TGTATCGaagccaatgtagat
gi|11 : CAAAAGTGCTTAC----TTTTTTA-----AA--TCTGT-TA-TGTATAAAAAAAAGTAC--CAGC-TGTCG------AAAC-TTTGAAAATATC-CTGA--TTTTT--TATC--AGT-GCAG-ATA---AGCCTGTCC--------------AC-----T
gi|4 : ATCGAGGAA-GTAC--CAGT-CATCG------AAACGTTGAAAA-TATC-ACAA--ATTTACGTA----AATGCAGATATACCTACCCGGTCCAAAACAGTCATTTTTCA----TAACTCTACACGGATATT----ATGA----AC----GTGTCACGATAGCCAGAC------TCTTCTTCCATGTAAAGGAACATTACAGTAA----------------ATGCCACCACCAAAATATCTTTCACGTTTATAAAATGATGGCGAGAAccaaaacagtcact
gi|16 : a------------------------AGCAA----------------ATGCCAATACCCAAAAATCCTTCA--TTTATAAAATGATGaatc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTGTAAACTTTTACCGCAACTTAAACTCAACATTTAGATTTAAAAATTTGAGTATGAATTTTATAAACTTTGCACCCGAGTAGCTGAAACATCCATAAATTTTGAGATGCATTTCAGAAATATTCATCTACCAGAGTTTTCAATTA
Unaligned ( gi|17 ): GGTACTGTCACTAACAATACTCTTATTCGAGTCCGATTCCCATAAACTACACGCT
Unaligned ( gi|18 ): ACAGACGCCATTCATCTGTATGCATGCATTCCTGTTTCTTTAA
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 2 111111111 2222222222222222 11111 11111 222222 11 333333333333333333333 99999999999999 555555555555555 22222 9999999999999999999
lowQualScore : 44 0 1 1 777777777 1 3 4444444444444444 1 6666 2 00000 33 1 0 4 44444 333333 11 5 3 6 1 1 5 2 111111111111111111111 0 55 1 1 00000000000000 1 2 1 333 2 6 3 111111111111111 1 11 22222 2222222222222222222 2 1 2 0
lowQualScore : .. . . . ......... . . ................ . .... . ..... .. . . . ..... ...... .. . . . . . . . ..................... . .. . . .............. . . . ... . . . ............... . .. ..... ................... . . . .
lowQualScore : 33 0 0 2 999999999 0 3 1111111111111111 7 5555 9 88888 99 4 8 4 99999 666666 99 7 0 7 0 0 2 2 333333333333333333333 7 88 0 0 44444444444444 0 0 0 888 0 5 0 222222222222222 0 77 00000 3333333333333333333 2 0 5 2
consensus : GCANTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A--A----A----T---TCGA----GTCCGATTCCC-AT--ANA--CTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC----NTTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATCCCGA--T----TTTTC-TA---C--AATGCAGATAAGCCTGTCC--TC--T-ACTC-NAAACAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAG-C-CCCCTTCCA-GTAAAGGAA-AT-ACAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
Reference ( family-3812 ) : GCNATGT-GCNAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A--A----A----T---TCAA----GTCCGATTCCC-AN--ATA--CTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC----NTTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTNAAAATATCCCGA--T----TTTTC-TA---C--AGTGNAGATAANCCNGTCC--TCA-TAACTC-NANACGGNTATTTTTCATGACTATACCCGG-----------GTGTCANGATAGNCAGNCACCCCTTC-----------------CAGTAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
gi|1 : GCACTGTCGCCATCTTTTACTGCAGCTCAA------CATTCTAA---------TTCA-A--ACA--A----T---TCAA----ATCCCATCAGC-AT--ATA--CCATACACACTCGTGAATCTAAAACATGTATCTATTCA-ACAGTACCTACTCTTCTTTTTA-----AA--TCCGT-TTTGTAT---AGAA-GTACCAGTCGTCAAAACGTTGAAAATATCCCAATTT----TTTTT-TA---C--AATGTAGATAGTCGTGTCC--TCAGT--CTCAAAAACAGTTATTTTTCATAACTATACCCGG-----------GTATTAAGATAAACAGCCACCCCTTCCAAGTAAAGGAAGATAACAGCAAATGACACAACTAAGAAATCCTTCACGTTTATATAATGATAGTGAGAAAAACAA
gi|10 : aggAACTCAAACTAAGTGATCTAACTGCTCTTTTTCACA--A----A----T---TTAA----GTCTGATTCAAGAA--AAA--CTATACACTCCCATATAGCTGAAACATTTATCTAT--ATACAGTATCTACT---ATTTTAT-----AA--T
gi|11 : CA-AAAGTGCTTAC----TTTTTTA-----AA--TCTGT-TATGTATAAAAAAAAGTACCAGCTGTCGAAACTTTGAAAATATCCTGA--T----TTTT--TAT--C--AGTGCAGATAAGCCTGTCC--------ACTC-CAAAacccg
gi|12 : ATTCCC-AT--ATA--CTATACATTCTCATGTAGCTGAAACATTTATCCATCCT-ACAAGGCCTAT----TTTTTTTAAAA-AA--TCTGC-TTTGTATCGacagtcact
gi|13 : AACCATTACCACAACTCAAACTGAATGCTCTAT---------TTAA-A--A----AAA--T---TCGA----GTCCGATTCCC-AT--TAA--CTATACACT
gi|14 : gataactgtcataGCACTGTCGCAAACATTCACAGCAACTCAAACTCAACGCTCTTA---------TTAA-AAGA----A----TG--TC-T----GTCCGATTCCC-AT--AAA--CTATACACT
gi|15 : -GCAAACTTTCACCGAAACTCAAACTCAACGCTCTAA---------TTAA-AATA----A----T---TCGA----GTCCGATTCCT-AT--AAA--CTATACACT
gi|16 : cataAGCAAATGCCAATACCCAAAAATCCTTCA--TTTATAAAATGATGGAGGGAAAA
gi|17 : ttgtccaaataaaggaacactat----A----T---TCGA----GTCCGATTCCC-AT--AAA--CTACACGCT
gi|2 : ggtactgtcactaacaatactcttGCAA-GT-GCCAACATTTACTGAAGCTCAAACTCGACGCTCTAA---------TTCA-A--A---------T---TCAA----ATCCCATCCTC-AA--ATA--CTATACACTCTCGTGTACCTAAAACATTTATCTATTCA-ATAGTACCTAC----ATTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCTAAACGTTTGAAATATCTCGA--T----TTTTC-TA---C--AATCAAAATAAGCCTGTCC--TC--TA-----TACACGGGTATT----ATGA----AC---------------GTGACACGATAAACAG-----CCT-------------------CAGCAAATGCCACGATCAAAAAACCCTTCACGTTTTTAAAATGATGCCAAGAATAACAA
gi|3 : AATTTTCACCACAACTTAAACTCAACGCT-TAA---------TTTA-A--A----AAACAT---CCAA----GTCCAATTCAC-ATTTATAAACTTTTCACTCCCATGTAGCTGAAACATTTAT----TCA-ACAATACCTAT----TTTTCTG-----AAA-TCCAT-TTTGTATCAAAGAA-GTATCAGCCATCGAAAGGTTTAAAGTATC---A--TATAATTTTC--A---CCTAGT--AAATAAGCCAGTCC--------AGTC-CCAACAATTATTTTACACAATTATTTACGG-----------GTATTATAAtttcat
gi|4 : ATCGAGGAA-GTACCAGTCATCGAAACGTTGAAAATATCACAA--A----TTTACGTA------AATGCAGATATACCTACCCGGTC-------C-AAAACAGTCATTTTTCATAACTCTACACGGATATTATGAACGTGTCACGATAGCCAGACTCTTCTTCCATGTAAAGGAACATTACAGTAAATGCCACCACCAAAATATCTTTCACGTTTATAAAATGATGGCGAGAAAAa
gi|5 : aCTTTCCCAACAATTCAAATTCGGCGCTCTAA---------TTTA-A--A----A----TAAATCGA----GTCTGATGTCC-AT--CAA--CTATTTACT--------G--GAAACAT----CTATTCA-ATGAT-CCTA-----TTTTTCT-----AAATTTCATATTTGTGTTGAAGAA-TTAACACCAATCTTAACGTTGAAAATATCCCAA--T----AT----TAAGCC--AATGTAGATtc
gi|6 : ggtacagttgcacGCATTGTCGCAAACATTCACAGCCACCCAAACTCAACGCTTTAA---------TTAA-A--A----A----T-----AATTCTGTCCGATTCCC-AT--ATA--CTATACACTACTGTGTGACT
gi|7 : aggGCAATGTCGCCAACTTTTACTGCAGCTCAAATTCAGTGCTCTAA---------TCCA-A--AC---AC---T---TCAC----ATCTCATATCA-AT--GTA--CTATACATTCTCGTGTAGCTAAAACATTGATCTATTCA-ACAGTACTT-C----GTTGTTTGTTTAAA--TCCAT-agcccctgtgtttagtctactttcttgtcttaaccattcacatataagtacttcggcacgtctgtaaaaaaatgtttttt
gi|8 : aggT-GTAAACTTTTACCGCAACTTAAACTCAACA-TTTAGAT-------TTAA-A--A----A----T---TTGA----GTATGAATTTT-AT--AAA--CTTTGCA--CCCGAGTAGCTGAAACATCCATcgggagatgtgacacaatctgtctgaa
gi|9 : tATGT--CAAACTTTTACCGCAAC-CAAACTCAACGCTCTCA---------TTTA-A--AAAAGA----A---TCGA----GTCTGATTCCA-A---------------------TGTGGTTAAATTATTTATCTAGTCA-ACAGTACATAC----GGTTTaaattttgagatgcatttcagaaatattcatctaccagagttttcaatta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAGACGCCATTCATCTGTATGCATGCATTCCTGTTTCTTTAA
Alignments
lowQualScore : 111111111 22222222222222222 111111 222222 11 111 3333333333333 66666666666 44444444444 888888888888888888888888888888
lowQualScore : 1 1 777777777 1 3 99999999999999999 0 2 6666 2 1 0 4 444444 333333 11 5 3 6 1 000 0 9999999999999 2 77777777777 1 8 333 6 3 9 77777777777 55 333333333333333333333333333333 1 2 0
lowQualScore : . . ......... . . ................. . . .... . . . . ...... ...... .. . . . . ... . ............. . ........... . . ... . . . ........... .. .............................. . . .
lowQualScore : 0 2 999999999 0 3 99999999999999999 4 9 1111 0 4 8 4 999999 666666 99 7 0 7 0 222 7 0000000000000 2 22222222222 0 0 888 5 0 2 55555555555 88 666666666666666666666666666666 0 5 2
consensus : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC-N----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATC--CCGATTTT--TC-T--A---CAATGTAGATAAGCCTGTCC--TC--TACT-CAAAA-CAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACA-T-A-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
Reference ( family-3812 ) : GCANTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----ANACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC-N----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATC--CCGATTTT--TC-T--A---CAATGCAGATAAGCCTGTCC--TC--TACT-CNAAA-CAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--CC--CTTCCA-G-TAAAGGAA-A-T-A-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
gi|1 : GCACTGTCGCCATCTTTTACTGCAGCTCAA------CATTCTAA---------TTCA-A---ACA--A----T---TCAAATCCCATCAGC-AT----ATACCATACACACTCGTGAATCTAAAACATGTATCTATTCA-ACAGTACCTAC-TCTTCTTTTTA-----AA--TCCGT-TTTGTAT---AGAA-GTACCAGTCGTCAAAACGTTGAAAATATC--CCAATTTT--TT-TTTA---CAATGTAGATAGTCGTGTCC--TCAGT-CT-CAAAAACAGTTATTTTTCATAACTATACCCGG-----------GTATTAAGATAAACAGCCACCC--CTTCCAAG-TAAAGGAAGA-T-AACAGCAAATGACACAACTAAGAAATCCTTCACGTTTATATAATGATAGTGAGAAAAACAA
gi|10 : aggAACTCAAACTAAGTGATCTAACTGCTCTTTTTCACA---A----A----T---TTAAGTCTGATTCAAGAA----AAACTATACACTCCCATATAGCTGAAACATTTATCTAT--ATACAGTATCTACTA----TTTTAT-----AA--T
gi|11 : CA-AAAGTGCTTAC-T----TTTTTA-----AA--TCTGT-TATGTATAAAAAAAAGTACCAGCTGTCGAAACTTTGAAAATATC--CTGATTTT--T--T--AT--CAGTGCAGATAAGCCTGTCC-------ACTCCAAAA-CAGTCACTacccg
gi|12 : ATTCCC-AT----ATACTATACATTCTCATGTAGCTGAAACATTTATCCATCCT-ACAAGGCCTAT-T----TTTTTTAAAA-AA--TCTGC-TTTGTATCG
gi|13 : ACTGTCATAAACCATTACCACAACTCAAACTGAATGCTCTAT---------TTAA-A---A----AAA--T---TCGAGTCCGATTCCC-AT----TAACTATACACT
gi|14 : gataGCACTGTCGCAAACATTCACAGCAACTCAAACTCAACGCTCTTA---------TTAA-AAG-A----A----TG--TCT-GTCCGATTCCC-AT----AAACTATACACT
gi|15 : GCAAACTTTCACCGAAACTCAAACTCAACGCTCTAA---------TTAA-AAT-A----A----T---TCGAGTCCGATTCCT-AT----AAACTATACACT
gi|16 : cataTCCA-AATAAAGGAACACT-A-TAGCAAATGCCAATACCCAAAAATCCTTCA--TTTATAAAATGATGGAGGGAAAA
gi|17 : ttg----A----T---TCGAGTCCGATTCCC-AT----AAACTACACGCT
gi|2 : ggtactgtcactaacaatactcttGCCAACATTTACTGAAGCTCAAACTCGACGCTCTAA---------TTCA-A---A---------T---TCAAATCCCATCCTC-AA----ATACTATACACTCTCGTGTACCTAAAACATTTATCTATTCA-ATAGTACCTAC-A----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCTAAACGTTTGAAATATC--TCGATTTT--TC-T--A---CAATCAAAATAAGCCTGTCC--TC--TA----TACA-CGGGTATT----ATGA----AC---------------GTGACACGATAAACAGCC--T---------------------------CAGCAAATGCCACGATCAAAAAACCCTTCACGTTTTTAAAATGATGCCAAGAATAACAA
gi|3 : gcaagtAATTTTCACCACAACTTAAACTCAACGCT-TAA---------TTTA-A---A----AAACAT---CCAAGTCCAATTCAC-ATTTATAAACTTTTCACTCCCATGTAGCTGAAACATTTAT----TCA-ACAATACCTAT-T----TTTCTG-----AAA-TCCAT-TTTGTATCAAAGAA-GTATCAGCCATCGAAAGGTTTAAAGTATCATATAATTTTCACC-T--A-------GTAAATAAGCCAGTCC-------AGT-CCCAA-CAATTATTTTACACAATTATTTACGG-----------GTATT---ATAAAtttcat
gi|4 : ATCGAGGAA-GTACCAGTCATCGAAACGTTGAAAATATC--ACAAATTT--ACGT--A----AATGCAGATATACCTACCCGGTC-------CAAAA-CAGTCATTTTTCATAACTCTACACGGATATTATGAACGTGTCACGATAGCCAGAC--TCTTCTTCCATG-TAAAGGAACA-TTA-CAGTAAATGCCACCACCAAAATATCTTTCACGTTTATAAAATGATGGCGAGAAAA
gi|5 : aGTTGCAC-CTTTCCCAACAATTCAAATTCGGCGCTCTAA---------TTTA-A---A----A----TAAATCGAGTCTGATGTCC-AT----CAACTATTTACT--------G--GAAACAT----CTATTCA-ATGAT-CCTA--T----TTTTCT-----AAATTTCATATTTGTGTTGAAGAA-TTAACACCAATCTTAACGTTGAAAATATC--CCAATAT------T--AAGCCAATGTAGATtc
gi|6 : ggtacaGCATTGTCGCAAACATTCACAGCCACCCAAACTCAACGCTTTAA---------TTAA-AAATA----A----T---TCT-GTCCGATTCCC-AT----ATACTATACACTACTGTGTGACT
gi|7 : aggGCAATGTCGCCAACTTTTACTGCAGCTCAAATTCAGTGCTCTAA---------TCCA-A---AC---AC---T---TCACATCTCATATCA-AT----GTACTATACATTCTCGTGTAGCTAAAACATTGATCTATTCA-ACAGTACTT-C-G----TTGTTTGTTTAAA--TCCAT-agcccctgtgtttagtctactttcttgtcttaaccattcacatataagtacttcggcacgtctgtaaaaaaatgtttttt
gi|8 : aggTTGTAAACTTTTACCGCAACTTAAACTCAACA-TTTAGAT-------TTAA-A---A----A----T---TTGAGTATGAATTTT-AT----AAACTTTGCA--CCCGAGTAGCTGAAACATCCATcgggagatgtgacacaatctgtctgaa
gi|9 : AATGTC--AAACTTTTACCGCAAC-CAAACTCAACGCTCTCA---------TTTA-A---AAAAGA----A---TCGAGTCTGATTCCA-A---------------------TGTGGTTAAATTATTTATCTAGTCA-ACAGTACATAC-G----GTTTaaattttgagatgcatttcagaaatattcatctaccagagttttcaatta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAGACGCCATTCATCTGTATGCATGCATTCCTGTTTCTTTAA
Alignments
lowQualScore : 111111111 22222222222222222 111111 222222 11 111 3333333333333 66666666666 44444444444 555555555555555 22222
lowQualScore : 1 777777777 1 3 99999999999999999 0 2 6666 0 1 0 4 444444 333333 11 5 3 6 1 000 0 9999999999999 0 55555555555 0 8 333 6 3 9 77777777777 55 333333333333333 2 44444 1 2 0
lowQualScore : . ......... . . ................. . . .... . . . . ...... ...... .. . . . . ... . ............. . ........... . . ... . . . ........... .. ............... . ..... . . .
lowQualScore : 2 999999999 0 3 99999999999999999 4 9 1111 3 4 8 4 999999 666666 99 7 0 7 0 222 7 0000000000000 3 44444444444 6 0 888 5 0 2 55555555555 88 444444444444444 5 00000 0 5 2
consensus : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC-N----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATC--CCGATTTT--TC-T--A---CAATGTAGATAAGCCTGTCC--TC--TACT-CAAAA-CAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACA-T-A-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
Reference ( family-3812 ) : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC-N----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATC--CCGATTTT--TC-T--A---CAATGTAGATAAGCCTGTCC--TC--TACT-CAAAA-CAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACA-T-A-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
gi|1 : GCACTGTCGCCATCTTTTACTGCAGCTCAA------CATTCTAA---------TTCA-A---ACA--A----T---TCAAATCCCATCAGC-AT----ATACCATACACACTCGTGAATCTAAAACATGTATCTATTCA-ACAGTACCTAC-TCTTCTTTTTA-----AA--TCCGT-TTTGTAT---AGAA-GTACCAGTCGTCAAAACGTTGAAAATATC--CCAATTTT--TT-TTTA---CAATGTAGATAGTCGTGTCC--TCAGT-CT-CAAAAACAGTTATTTTTCATAACTATACCCGG-----------GTATTAAGATAAACAGCCACCC--CTTCCAAG-TAAAGGAAGA-T-AACAGCAAATGACACAACTAAGAAATCCTTCACGTTTATATAATGATAGTGAGAAAAACAA
gi|10 : aggAACTCAAACTAAGTGATCTAACTGCTCTTTTTCACA---A----A----T---TTAAGTCTGATTCAAGAA----AAACTATACACTCCCATATAGCTGAAACATTTATCTAT--ATACAGTATCTACTA----TTTTAT-----AA--T
gi|11 : CA-AAAGTGCTTAC-T----TTTTTA-----AA--TCTGT-TATGTATAAAAAAAAGTACCAGCTGTCGAAACTTTGAAAATATC--CTGATTTT--T--T--AT--CAGTGCAGATAAGCCTGTCC-------ACTCCAAAA-CAGTCACTacccg
gi|12 : ATTCCC-AT----ATACTATACATTCTCATGTAGCTGAAACATTTATCCATCCT-ACAAGGCCTAT-T----TTTTTTAAAA-AA--TCTGC-TTTGTATCG
gi|13 : ACTGTCATAAACCATTACCACAACTCAAACTGAATGCTCTAT---------TTAA-A---A----AAA--T---TCGAGTCCGATTCCC-AT----TAACTATACACT
gi|14 : gataGCACTGTCGCAAACATTCACAGCAACTCAAACTCAACGCTCTTA---------TTAA-AAG-A----A----TG--TCT-GTCCGATTCCC-AT----AAACTATACACT
gi|15 : GCAAACTTTCACCGAAACTCAAACTCAACGCTCTAA---------TTAA-AAT-A----A----T---TCGAGTCCGATTCCT-AT----AAACTATACACT
gi|16 : cataTCCA-AATAAAGGAACACT-A-TAGCAAATGCCAATACCCAAAAATCCTTCA--TTTATAAAATGATGGAGGGAAAA
gi|17 : ttg----A----T---TCGAGTCCGATTCCC-AT----AAACTACACGCT
gi|2 : ggtactgtcactaacaatactcttGCCAACATTTACTGAAGCTCAAACTCGACGCTCTAA---------TTCA-A---A---------T---TCAAATCCCATCCTC-AA----ATACTATACACTCTCGTGTACCTAAAACATTTATCTATTCA-ATAGTACCTAC-A----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCTAAACGTTTGAAATATC--TCGATTTT--TC-T--A---CAATCAAAATAAGCCTGTCC--TC--TAT----ACA-CGGGTATT----ATGA----AC---------------GTGACACGATAAACAGCC--T---------------------------CAGCAAATGCCACGATCAAAAAACCCTTCACGTTTTTAAAATGATGCCAAGAATAACAA
gi|3 : gcaagtAATTTTCACCACAACTTAAACTCAACGCT-TAA---------TTTA-A---A----AAACAT---CCAAGTCCAATTCAC-ATTTATAAACTTTTCACTCCCATGTAGCTGAAACATTTAT----TCA-ACAATACCTAT-T----TTTCTG-----AAA-TCCAT-TTTGTATCAAAGAA-GTATCAGCCATCGAAAGGTTTAAAGTATCATATAATTTTCACC-T--A-------GTAAATAAGCCAGTCC-------AGT-CCCAA-CAATTATTTTACACAATTATTTACGG-----------GTATT---ATAAAtttcat
gi|4 : ATCGAGGAA-GTACCAGTCATCGAAACGTTGAAAATATC--ACAAATTT--ACGT--A----AATGCAGATATACCTACCCGGTC-------CAAAA-CAGTCATTTTTCATAACTCTACACGGATATTATGAACGTGTCACGATAGCCAGAC--TCTTCTTCCATG-TAAAGGAACA-TTA-CAGTAAATGCCACCACCAAAATATCTTTCACGTTTATAAAATGATGGCGAGAAAA
gi|5 : aGTACAGTTGCAC-CTTTCCCAACAATTCAAATTCGGCGCTCTAA---------TTTA-A---A----A----TAAATCGAGTCTGATGTCC-AT----CAACTATTTACT--------G--GAAACAT----CTATTCA-ATGAT-CCTA--T----TTTTCT-----AAATTTCATATTTGTGTTGAAGAA-TTAACACCAATCTTAACGTTGAAAATATC--CCAATAT------T--AAGCCAATGTAGATtc
gi|6 : gGCATTGTCGCAAACATTCACAGCCACCCAAACTCAACGCTTTAA---------TTAA-AAATA----A----T---TCT-GTCCGATTCCC-AT----ATACTATACACTACTGTGTGACT
gi|7 : aggGCAATGTCGCCAACTTTTACTGCAGCTCAAATTCAGTGCTCTAA---------TCCA-A---AC---AC---T---TCACATCTCATATCA-AT----GTACTATACATTCTCGTGTAGCTAAAACATTGATCTATTCA-ACAGTACTT-C-G----TTGTTTGTTTAAA--TCCAT-agcccctgtgtttagtctactttcttgtcttaaccattcacatataagtacttcggcacgtctgtaaaaaaatgtttttt
gi|8 : aggTTGTAAACTTTTACCGCAACTTAAACTCAACA-TTTAGAT-------TTAA-A---A----A----T---TTGAGTATGAATTTT-AT----AAACTTTGCA--CCCGAGTAGCTGAAACATCCATcgggagatgtgacacaatctgtctgaa
gi|9 : CAAACTTTTACCGCAAC-CAAACTCAACGCTCTCA---------TTTA-A---AAAAGA----A---TCGAGTCTGATTCC--------AA--------------TGTGGTTAAATTATTTATCTAGTCA-ACAGTACATAC-G----GTTTaaattttgagatgcatttcagaaatattcatctaccagagttttcaatta
blockSeqs : C CTGCTCTTT C C AAAACAT G TTAT C T TA TGTTTA AT A A A G ATA CACCTA TCTAT . TTA T A A ATATTATGAAC AC TCTTCTTCCATG C CTA T C
blockSeqs : A AT A . AAAAGAA . . T . T TAAAA A . C . T C TAAGCC ACTC . TTT C C A . AC T C TTA G C
blockSeqs : C . A . AGAATG . . T . T T . . C . G T TTATC GGTC . . . . . . . . . C .
blockSeqs : T . A . AATAAA . . C . A A . . C . G A TCTAC AGT .
blockSeqs : C . C . AATAAT . . C . T T . . C . T C ACGTA
blockSeqs : A . T . AAAAT . . T . T G . . T
blockSeqs : A . T . ATAAT . . C . G T .
blockSeqs : T . A . ACACT . . . . G
blockSeqs : C . C . AAT . . .
blockSeqs : C . A . AAT . .
blockSeqs : . T . AT . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : T***** TCNTC******** NGTC*******
originalCons : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTAC-N----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATC--CCGATTTT--TC-T--A---CAATGTAGATAAGCCTGTCC--TC--TACT-CAAAA-CAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACA-T-A-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
finalCons : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTACCTACT-----TTTTTT-----AA--TCCGT-TTTGTATCGAAGAA-GTACCAGCCGTCGAAACGTTGAAAATATC--CCGATTTTTCNTC--------AATGTAGATAAGCCTGTCCNGTC-------CAAAA-CAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACA-T-A-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAGACGCCATTCATCTGTATGCATGCATTCCTGTTTCTTTAA
Alignments
lowQualScore : 111111111 22222222222222222 1111 11111 11 1111 1111 111 1111 44444444444 555555555555555 2222
lowQualScore : 1 777777777 1 3 99999999999999999 0 2 6666 0 1 2 4 8888 3333 11111 00 5 5 77 5 77 5 1 5 2 4444 0000 0 999 9999 333 6 3 9 77777777777 55 333333333333333 2 4444 1 2 0
lowQualScore : . ......... . . ................. . . .... . . . . .... .... ..... .. . . .. . .. . . . . .... .... . ... .... ... . . . ........... .. ............... . .... . . .
lowQualScore : 2 999999999 0 3 99999999999999999 4 9 1111 3 4 2 0 5555 9999 88888 66 0 7 99 7 99 7 0 2 2 2222 5555 3 888 8888 888 5 0 2 55555555555 88 444444444444444 5 0000 0 5 2
consensus : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTAC----CTACT----TTTTTN----AA--TCCGT-TT-TGTATCGAAGAA-GTAC--CAGC-CGTCGAAACGTTGAAAATATCCCGAT----TTTTCGT--CAATGTAGATAAGCCTGTCCG--GTCC--A-AAACAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACACTA-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
Reference ( family-3812 ) : GCACTGTCGCAAACTTTCACCGCAACTCAAACTCAACGCTCTAA---------TTNA-A---A----A----T---TCGAGTCCGATTCCC-AT----AAACTATACACTCCCGTGTAGCTGAAACATTTATCTATTCA-ACAGTAC----CTACT----TTTTTT----AA--TCCGT-TT-TGTATCGAAGAA-GTAC--CAGC-CGTCGAAACGTTGAAAATATCCCGAT----TTTTCNT--CAATGTAGATAAGCCTGTCCN--GTCC--A-AAACAGTTATTTTTCATAACTATACACGG-----------GTGTCACGATAAACAGCC--TC--CTTCCA-G-TAAAGGAACA-TA-CAGCAAATGCCACNACCAAAAAATCCTTCACGTTTATAAAATGATGGCGAGAAAAACAA
gi|1 : GCACTGTCGCCATCTTTTACTGCAGCTCAA------CATTCTAA---------TTCA-A---ACA--A----T---TCAAATCCCATCAGC-AT----ATACCATACACACTCGTGAATCTAAAACATGTATCTATTCA-ACAGTAC----CTACTCTTCTTTTTA----AA--TCCGT-TT-TGTAT---AGAA-GTAC--CAGT-CGTCAAAACGTTGAAAATATCCCAAT----TTTTTTTTACAATGTAGATAGTCGTGTCCTCAGTCTCAA-AAACAGTTATTTTTCATAACTATACCCGG-----------GTATTAAGATAAACAGCCACCC--CTTCCAAG-TAAAGGAAGA-TAACAGCAAATGACACAACTAAGAAATCCTTCACGTTTATATAATGATAGTGAGAAAAACAA
gi|10 : aggAACTCAAACTAAGTGATCTAACTGCTCTTTTTCACA---A----A----T---TTAAGTCTGATTCAAGAA----AAACTATACACTCCCATATAGCTGAAACATTTATCTAT--ATACAGTAT----CTACTA---TTTTAT----AA--T
gi|11 : CA-AAAGTGC----TTACT----TTTTTA----AA--TCTGT-TA-TGTATAAAAAAAAGTAC--CAGC-TGTCGAAACTTTGAAAATATCCTGAT----TTTTTAT--CAGTGCAGATAAGCCTGTCCA--CTCC--A-AAACAGTCACTacccg
gi|12 : ATTCCC-AT----ATACTATACATTCTCATGTAGCTGAAACATTTATCCATCCT-ACAAGGC----CTATT----TTTTTTAAAAAA--TCTGC-TT-TGTATCG
gi|13 : ACTGTCATAAACCATTACCACAACTCAAACTGAATGCTCTAT---------TTAA-A---A----AAA--T---TCGAGTCCGATTCCC-AT----TAACTATACACT
gi|14 : gataGCACTGTCGCAAACATTCACAGCAACTCAAACTCAACGCTCTTA---------TTAA-AAG-A----A----TG--TCT-GTCCGATTCCC-AT----AAACTATACACT
gi|15 : GCAAACTTTCACCGAAACTCAAACTCAACGCTCTAA---------TTAA-AAT-A----A----T---TCGAGTCCGATTCCT-AT----AAACTATACACT
gi|16 : cataTCCA-AATAAAGGAACACTA-TAGCAAATGCCAATACCCAAAAATCCTTCA--TTTATAAAATGATGGAGGGAAAA
gi|17 : ttg----A----T---TCGAGTCCGATTCCC-AT----AAACTACACGCT
gi|2 : ggtactgtcactaacaatactcttGCCAACATTTACTGAAGCTCAAACTCGACGCTCTAA---------TTCA-A---A---------T---TCAAATCCCATCCTC-AA----ATACTATACACTCTCGTGTACCTAAAACATTTATCTATTCA-ATAGTAC----CTACA----TTTTTT----AA--TCCGT-TT-TGTATCGAAGAA-GTAC--CAGC-CGTCTAAACGTTTGAAATATCTCGAT----TTTTCTA--CAATCAAAATAAGCCTGTCC----TCT--ATACACGGGTATT----ATGA----AC---------------GTGACACGATAAACAGCC--T--------------------------CAGCAAATGCCACGATCAAAAAACCCTTCACGTTTTTAAAATGATGCCAAGAATAACAA
gi|3 : gcaagtAATTTTCACCACAACTTAAACTCAACGCT-TAA---------TTTA-A---A----AAACAT---CCAAGTCCAATTCAC-ATTTATAAACTTTTCACTCCCATGTAGCTGAAACATTTAT----TCA-ACAATAC----CTATT----TTTCTG----AAA-TCCAT-TT-TGTATCAAAGAA-GTAT--CAGC-CATCGAAAGGTTTAAAGTATC---ATATAATTTTCAC--CTA-GTAAATAAGCCAGTCCA--GTCC----CAACAATTATTTTACACAATTATTTACGG-----------GTATT---ATAAAtttcat
gi|4 : ATCGAGGAA-GTAC--CAGT-CATCGAAACGTTGAAAATATCACAAA----TTTACGT--AAATGCAGATATACCTACCCG--GTCC--A-AAACAGTCATTTTTCATAACTCTACACGGATATTATGAACGTGTCACGATAGCCAGAC--TCTTCTTCCATG-TAAAGGAACATTA-CAGTAAATGCCACCACCAAAATATCTTTCACGTTTATAAAATGATGGCGAGAAAA
gi|5 : aGTACAGTTGCAC-CTTTCCCAACAATTCAAATTCGGCGCTCTAA---------TTTA-A---A----A----TAAATCGAGTCTGATGTCC-AT----CAACTATTTACT--------G--GAAACAT----CTATTCA-ATGAT-C----CTA-T----TTTTCT----AAATTTCATATT-TGTGTTGAAGAA-TTAA--CACC-AATCTTAACGTTGAAAATATCCCAAT----ATTAAGC--CAATGTAGATtc
gi|6 : gGCATTGTCGCAAACATTCACAGCCACCCAAACTCAACGCTTTAA---------TTAA-AAATA----A----T---TCT-GTCCGATTCCC-AT----ATACTATACACTACTGTGTGACTAGCCCCTGTGTTTAGTC------TAC----TTTCT----TGTCTT----AA---CCAT-TCACATAT-----AA-GTACTTCGGCACGTC
gi|7 : aggGCAATGTCGCCAACTTTTACTGCAGCTCAAATTCAGTGCTCTAA---------TCCA-A---AC---AC---T---TCACATCTCATATCA-AT----GTACTATACATTCTCGTGTAGCTAAAACATTGATCTATTCA-ACAGTACTTCGTTGTT----TGTTTA----AA--TCCAT-tgtaaaaaaatgtttttt
gi|8 : aggTTGTAAACTTTTACCGCAACTTAAACTCAACA-TTTAGAT-------TTAA-A---A----A----T---TTGAGTATGAATTTT-AT----AAACTTTGCA--CCCGAGTAGCTGAAACATCCATcgggagatgtgacacaatctgtctgaa
gi|9 : CAAACTTTTACCGCAAC-CAAACTCAACGCTCTCA---------TTTA-A---AAAAGA----A---TCGAGTCTGATTCC--------AA--------------TGTGGTTAAATTATTTATCTAGTCA-ACAGTAC----ATACaaattttgagatgcatttcagaaatattcatctaccagagttttcaatta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAGACGCCATTCATCTGTATGCATGCATTCCTGTTTCTTTAA