lowQualScore : 6666666666666666
lowQualScore : 8 4 99 3 1111111111111111 1 7
lowQualScore : . . .. . ................ . .
lowQualScore : 3 0 55 2 1111111111111111 0 8
consensus : ATTTTAAAGACGATTN-CTATAGTTTTTCATGCGCATCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
Reference ( gi|6 ) : ATATTAAGGGCGATTG-CTATAGTTTTTCATGCGCACCAGCTCAGCGCACAAAGGGAAGCAATTTTGTTGA
gi|1 : ATTTTAAGGG-GATTTTCTATAGTTTT-CATGCACACCAGTTCTTCACACAATGGGAGGCAACTTTGCCGA
gi|3 : ATTTTAAAGACAATTA-CTACAGACCT-CATGCCCATCAATTCCACGCACAAAGGGAAGCAACTTTGTgaccaag
gi|16 : aTATTAAAGACGATTG-CTATAGTTGTTCATGCGCATCAACACTGCGcaaga
gi|19 : attTTAAGGACGATTG-CTACAGTTTTTCATGCGCACC
gi|13 : atTTAAAGACGATTT-CTTCAGTTTTTCATG------------G-GCACAAAGGGAAGCAACTTTGTTGA
gi|11 : cgTTAAATACGATTT-CAATTGTTTTT-ATGCTCGTCGATTCCGCGAATAAAGGGAAGCAAATTTGgttg
gi|17 : TTAAGGACGAT-G-CTATAGTTTTTCAGG-------------------AAGGGAAGCAACTTTGTccg
gi|14 : AAAGATAATTT-CAATAGTTTTTCATGTGCA---------------AAGGGAAACAACTCTGTTGAcaa
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GATTAACGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGTC
Unaligned ( gi|4 ): TAAAAAGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|5 ): ATTACAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|7 ): TAAAAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|8 ): TTAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|9 ): TTAAAGACGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|10 ): TAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|12 ): ACAAAAGATAGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNATATAACTTGACGCAGTCGAGT
Unaligned ( gi|15 ): TAAAGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TTAAAGACGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): TTTCGTGCATAAAGGAAGGCAATTCTGTCGATT
Alignments
lowQualScore : 3333333333333
lowQualScore : 55 1 2222222222222 0
lowQualScore : .. . ............. .
lowQualScore : 44 9 9999999999999 7
consensus : ATTTTAAGGACGATTN-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
Reference ( family-3648 ) : ATTTTAAAGACGATTN-CTATAGTTTTTCATGCGCATCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
gi|1 : ATTTTAAGGG-GATTTTCTATAGTTTT-CATGCACACCAGTTCTTCACACAATGGGAGGCAACTTTGCCGA
gi|11 : TTAAATACGATTT-CAATTGTTTTT-ATGCTCGTCGATTCCGCGAATAAAGGGAAGCAAATTTGCCGgaccaag
gi|13 : TTAAAGACGATTT-CTTCAGTTTTTCATG-G------------GCACAAAGGGAAGCAACTTTGTTGA
gi|14 : cgAAAGATAATTT-CAATAGTTTTTCATGTG---------------CAAAGGGAAACAACTCTGTTGAgttg
gi|16 : caTTAAAGACGATTG-CTATAGTTGTTCATGCGCATCAACACTGCGatttc
gi|17 : atttaTTAAGGACGAT-G-CTATAGTTTTTCAGG-------------------AAGGGAAGCAACTTTGTCAA
gi|19 : TTTAAGGACGATTG-CTACAGTTTTTCATGCGCACC
gi|3 : aATTTTAAAGACAATTA-CTACAGACCT-CATGCCCATCAATTCCACGCACAAAGGGAAGCAACTTTGTCAA
gi|6 : aATATTAAGGGCGATTG-CTATAGTTTTTCATGCGCACCAGCTCAGCGCACAAAGGGAAGCAATTTTGTTGAga
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GATTAACGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGTC
Unaligned ( gi|4 ): TAAAAAGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|5 ): ATTACAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|7 ): TAAAAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|8 ): TTAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|9 ): TTAAAGACGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|10 ): TAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|12 ): ACAAAAGATAGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNATATAACTTGACGCAGTCGAGT
Unaligned ( gi|15 ): TAAAGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TTAAAGACGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): TTTCGTGCATAAAGGAAGGCAATTCTGTCGATT
Alignments
lowQualScore : 2222222222
lowQualScore : 55 1 55 7777777777 0
lowQualScore : .. . .. .......... .
lowQualScore : 44 9 88 2222222222 7
consensus : ATTTTAAGGACGATTN-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
Reference ( family-3648 ) : ATTTTAAGGACGATTN-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
gi|1 : ATTTTAAGGG-GATTTTCTATAGTTTT-CATGCACACCAGTTCTTCACACAATGGGAGGCAACTTTGCCGA
gi|11 : TTAAATACGATTT-CAATTGTTTTT-ATGCTCGTCGATTCCGCGAATAAAGGGAAGCAAATTTGCCGgaccaag
gi|13 : TTAAAGACGATTT-CTTCAGTTTTTCATG------------G-GCACAAAGGGAAGCAACTTTGTTGA
gi|14 : cgAAAGATAATTT-CAATAGTTTTTCATGTGCA---------------AAGGGAAACAACTCTGTTGAgttg
gi|16 : caTTAAAGACGATTG-CTATAGTTGTTCATGCGCATCAACACTGCatttc
gi|17 : atttaTTAAGGACGAT-G-CTATAGTTTTTCAGG-------------------AAGGGAAGCAACTTTGTCAA
gi|19 : TTTAAGGACGATTG-CTACAGTTTTTCATGCGCACC
gi|3 : aATTTTAAAGACAATTA-CTACAGACCT-CATGCCCATCAATTCCACGCACAAAGGGAAGCAACTTTGTCAA
gi|6 : aATATTAAGGGCGATTG-CTATAGTTTTTCATGCGCACCAGCTCAGCGCACAAAGGGAAGCAATTTTGTTGAga
blockSeqs : T T CT TCGATTCCGC
blockSeqs : T T TG TCAACACTGC
blockSeqs : T T CG TCAATTCCAC
blockSeqs : G T CG CCAGCTCAGC
blockSeqs : G T CC G
blockSeqs : G T CG .
blockSeqs : A T . .
blockSeqs : G . .
blockSeqCons : G*
originalCons : ATTTTAAGGACGATTN-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
finalCons : ATTTTAAGGACGATTG-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GATTAACGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGTC
Unaligned ( gi|4 ): TAAAAAGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|5 ): ATTACAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|7 ): TAAAAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|8 ): TTAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|9 ): TTAAAGACGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|10 ): TAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|12 ): ACAAAAGATAGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNATATAACTTGACGCAGTCGAGT
Unaligned ( gi|15 ): TAAAGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TTAAAGACGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): TTTCGTGCATAAAGGAAGGCAATTCTGTCGATT
Alignments
lowQualScore : 2222222222
lowQualScore : 77 1 55 7777777777 0
lowQualScore : .. . .. .......... .
lowQualScore : 33 9 88 2222222222 7
consensus : ATTTTAAGGACGATTN-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
Reference ( family-3648 ) : ATTTTAAGGACGATTG-CTATAGTTTTTCATGCGCACCAATTCCGCGCACAAAGGGAAGCAACTTTGTCGA
gi|1 : ATTTTAAGGG-GATTTTCTATAGTTTT-CATGCACACCAGTTCTTCACACAATGGGAGGCAACTTTGCCGA
gi|11 : TTAAATACGATTT-CAATTGTTTTT-ATGCTCGTCGATTCCGCGAATAAAGGGAAGCAAATTTGCCGgaccaag
gi|13 : TTAAAGACGATTT-CTTCAGTTTTTCATG------------G-GCACAAAGGGAAGCAACTTTGTTGA
gi|14 : cgAAAGATAATTT-CAATAGTTTTTCATGTGCA---------------AAGGGAAACAACTCTGTTGAgttg
gi|16 : caTTAAAGACGATTG-CTATAGTTGTTCATGCGCATCAACACTGCatttc
gi|17 : atttaTTAAGGACGAT-G-CTATAGTTTTTCAGG-------------------AAGGGAAGCAACTTTGTCAA
gi|19 : TTTAAGGACGATTG-CTACAGTTTTTCATGCGCACC
gi|3 : aATTTTAAAGACAATTA-CTACAGACCT-CATGCCCATCAATTCCACGCACAAAGGGAAGCAACTTTGTCAA
gi|6 : aATATTAAGGGCGATTG-CTATAGTTTTTCATGCGCACCAGCTCAGCGCACAAAGGGAAGCAATTTTGTTGAga
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GATTAACGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTGTC
Unaligned ( gi|4 ): TAAAAAGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|5 ): ATTACAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|7 ): TAAAAGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
Unaligned ( gi|8 ): TTAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|9 ): TTAAAGACGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|10 ): TAAAGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|12 ): ACAAAAGATAGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNATATAACTTGACGCAGTCGAGT
Unaligned ( gi|15 ): TAAAGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TTAAAGACGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): TTTCGTGCATAAAGGAAGGCAATTCTGTCGATT