lowQualScore : 55555555555555555 11111 111111111 22222 4444444444444444444444444444444444444444 2222222222222222222 111111 3333333333333333333333 1 1
lowQualScore : 3 1 8 3 0 0 1 0 88888888888888888 9999 777 3 2 0 0 0 2 4 77777 3 666666666 3 7777 44 7 3 00000 4 3 77777 0 4444444444444444444444444444444444444444 6666666666666666666 555 88888888 555555 33 33 8888888888888888888888 555 2 0 33 1 1 7 2 2 5
lowQualScore : . . . . . . . . ................. .... ... . . . . . . . ..... . ......... . .... .. . . ..... . . ..... . ........................................ ................... ... ........ ...... .. .. ...................... ... . . .. . . . . . .
lowQualScore : 2 0 5 0 7 2 6 8 22222222222222222 5555 000 0 1 8 7 7 5 3 88888 6 222222222 3 1111 66 3 6 22222 7 3 77777 5 4444444444444444444444444444444444444444 1111111111111111111 000 88888888 888888 77 77 4444444444444444444444 000 9 4 77 4 2 9 9 8 0
consensus : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGANCAGAAGAC---TAT----TAT-A--TA--C-TA---GAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAA-AC------ATGAATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T---ATTGTTGTT-TCT-----ACATTGAC----------------CGCA--------------------AAAAT----------------C--TA---CTGA--T-----TTTNTT---ATC--AAATCTACT--G----------------------TTTTT---AATC-CCAAA--TCTACTGATCTGAAA-TCTCAGATTCAGCAAATCCATCACATG
Reference ( gi|5 ) : AAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAAAAATATCCAAGTAGGATGCTAGGAGAAATCTAGATCAGAAGAC---T------TGT-G--TA--C-TA---GAGTGCCTTCTGATGAGCTGCAAGCTCAACAGTGAATGCCACTGAAATTATAGAATAAA-AC------ATTAATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T---ACTGTCGTT-TCT-----ACATTGAC----------------TGCA--------------------AAAAT----------------C--TA---CTGA--T-----TTTGTT---ATC--AAATCTACT--GA---------------------TTTTT---AATC-CCAAA--TCTACTGATTTGAGA-TCTCAGATTAAGCAAATCCATCAAATG
gi|2 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTTACAAGTATCTAAATAGGATGCTAGGAGAAACCTAGATCAGAAGAC---TATTATATAT-A--TA--C-TA---GAGTGTCGTCTGATGAGCTCCAAGCTCACCAGTGAATGC------AATTATAGAATAAA-AC------ACGAGTAGAAA-TAG----G--TTATTTTAGTTA-TTTAT---ATTATTTTT-TCT-----ATGTTGAC----------------CGCT--------------------AAAAT----------------A--TA---CTGA----------TGCA---A----AAATCTACT--GA---------------------TTTTT---AATC-CCAAA--TCTACTGATTTGAAA-TCTCAGATTCAGCAAATCCATCACATG
gi|3 : gttaagtttcatagtaccattttataaatcAAGTCGTATCATAATTCATTCAAGCTCTCTTCTAATAAGTATTCAAGAAGGATGCTAGGAGAAATCTAGTTCAGAAGAC---TAT----TAT-A--TA--C-AA---GAGTGTCGTCTGATGAGCTCCAAGCTCACTGGTGAATGC-----AAAT-ATAGAATAAA-AC------ATGAGTAGAAA-TAG----G--TTATTTTAGTTA-TTT-TC--ATTGCTGTT-TCT-----ACATTGAC----------------TTCA--------------------AAAATATACTGAAGCAATAATC--TA---CCGA--T-----TTT-TT---ATC--AAATCTACT--GA---------------------TTTTT---AATC-CCAAA--TCTTCTGATTT-AAA-TCTCAGTTTCAGCAAATCTATCACATGta
gi|4 : aatcAAGTCATATAATGATTCA-TTAAG--------------GTATCAAAATACGATGCTAGGGAAAATCTAGAGCAGAAGAC---T------ATT-A--TA--A-TA---G--TGTCTTCTGATGAGCTGCAAGCTCAACAGAGAATGCCACTGACATTACAGAATTAA-AC------TTAAATAGAAA-TAG----G--TTAT-----TTA-TTC-T---ATTGTCGTT-TCT-----ACATTGAC----------------TGCA--------------------AAAAT----------------A--TA---CTGAGTT-----TTTTTT---ATC--AAATCTACT--TATTTTTTTATCAAATCAACTGTTTTTT---AATC-CTTAT--TCTACTGATCTGACA-TCCCAGATTAAGCAAATCCATCAt
gi|10 : AAGTGATATCATGATTCAGTTAAGCTCCTTGCTTATAAGTATCTAAATAGAATGCTAGGAGAAACCTAGATCAGAAGACTA-T------TAT-A--TA--C-AA---GAGTGTCGTC----------CAAGCTCACCAGTGAATGC------AATTTTAAAATAAA-AT------ATGAGTAGAAA-TAG----G--CTATTTTAGTTATTTT-T---ATTGTTATTATCT-----ACtcac
gi|11 : gttaagtttcatagtattttataaatcAAGTCGTATCATGATTCAGTTA-TCTCCCTGCTCAGAAGTAGCCAAGTAGGATGCTAGGAGAAA-CTAGATAAGAAGATA--T------TAT-A--TA--C-TA---CAGTGCATTTTGATG---------CTCAACAGTGAATATCACTGAAATTATAGACTAAA-AC------ATGAATAGCGGTTAG----G--TTATT
gi|1 : aatcAACTTATATTATGATTCATTTAAACTCCCTGCTAAGAAGCATCCAAGTAGAATGCCAGGGGAAATCTAGACCAGAAGACTAAT------TAT-AATTA--A-TA---GAGTGGCCTC-----AG-TGC---TTT----TTGAATGTCACTGAAATTACAG-ATAAA-AC------ATGAAT---AA-CAG----GACTTATATAAGTTC-TTaaaattaaaacatttcatt
gi|16 : atcAAGACATATCATGATTCAGTTAAACTCCCTGCTAAGAAGAATCCAAGTAGGATGCTAAGAGAAATCTAgatgattacaaataattaatgaatacaaatagaaataattatgttattttagttatttttattgctgtttctacattgactgcaaaaatctactggcagatgcaaaaatctactgatttttttatcaaatctgctgttatttaatcccaaatctactgatctgaaatccc
gi|7 : tttctgagtatcattttctaaatcAGTCATATCATCATTCAATTGAACTCCCTGCCAAGAAACATCAAAATAGGATGCTATAAGAAATCCAGAACAGAAGAC---TATTTTATTT-A--TA--A-TA---GAGT---TCCTGCTGAGCTGTGAGCTCAACAGTGACTGTCACTGAAATTACAGAAAAAA-AT------GTGAGTATAAA-TAG---------ATATAGGTTA-TTT-------------T-TCT-----AC--TAAT----------------T----------------------------------------------------------T-----TTTTTT---ATA--AAATCTACT--GT---------------------TTTTT---AATC-CTAAA--TCTACTGctga
gi|8 : tgtttagtttcagagtatcattttctaaatcAGTCATATCATGATTCAATTGAGCTCACTGCCAAAAAACATCAAAATAGGATGCTATAAAAAATCCAGAACCGAAGAC---TATTATATTT-A--TA--A-TA---GAGTGCCTGCTGA---GCTGCAAGCTCAACAGTGACTGTCACTGAAATTACAGAA-AAA-ATGTGAGTATAAATAGATA-TAG----G--TTATTTT-------TC-T---ACTAATTTT-TTT--------TT-------------------------------------------AAAAT----------------C--TA---CTGT--T-----TTTA-----ATCCTAAATCTACT--G
gi|9 : ttgtttagtttcggagtatcattttcttaatcATTCAGTTAAACTCCCTGCTAAGAAGTATCCAAACAGGATGCCAGGAGAAATCTAGACCAGAAG-----T------TTA-G--TA--CATAATCGAGTGCCTTCTGATGAGCTGCAACCTCA
gi|6 : AAATAGGATGCTAGGAGAAATCTAGATCAGAAG-C---T------TATTA--TATTC-TA---GAGTGTTGTCTGATGAGCTCCAAACTCACCAGTGAATGC------AGTTGTAGAATAAA-AC------ATGAGTAGAAT-TAG----G--TTATTTTATTTA-TTT-TTTAATTGTTGTT-TTT-----ACATTGACCGCAAAAATAAACTGACGCA--------------------AAAAT----------------C--TA---CTGA--T-----TTTTTT---ATC--AAATCTACT--GA---------------------TTTTT---AATC-TCAAA--TCTACTTATTTGAAA-TCTCAGATTCAGTAAATCCATCACATGttgttaaactacatgtttcttgtagtttctacattgacaacaaaactcttctaatttttattaaatatactgttcattaatcctaaatctactaatctaaaatcccagattcagcaaatccaccaca
gi|13 : TAGACTAAA-AC------GTGAATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T----TTATTGAA-TAT-----AGATCG-------------------GAA--------------------AAAAT----------------A--TA---TTGA----------CGCA---A----AAATCAACT--G------------------------------AATC-CCAAA--TCTACTGATTC---------------AGCAAATCTATCAta
gi|1 : AATGAATAC------A--AATAGAAA-TAATTATG--TTATTTTAGTTA-TTT-TT--ATTGCTGTT-TCT-----ACATTGAC----------------TGCAAAAATCTACTGGCAGATGCAAAAAT----------------C--TA---CTGA--T-----TTTTTT---ATC--AAATCTGCT--GT---------------------TATTT---AATC-CCAAA--TCTACTGATCTGAAA-TCCCc
gi|14 : atcaacttatattatgattcatttaaactccctgctaagaagcatccaagtagaatgccaggggaaatctagaccagaagactaattataattaatagagtggcctcagtgctttttgaatgtcactgaaattacagataaaacatgaataacaggacttatataagttcttgatgattacaaataattTTAACAGAAA-TAG----G--TTATTTTAGTTATTTT-T---GTTGTCATT-TCT-----ACTCGGAC----------------TGCA--------------------AAATT----------------C--TA---CTGA--
gi|9 : catgagtTT-T---CTTGTAGTT-TCT-----ACATTGAC----------------AACA--------------------AAACT----------------C--TT---CTAA--T-----TTT--T---ATT--AAATATACT--GT---------------------TCATT---AATC-CTAAA--TCTACTAATCTAAAA-TCCCAGATTCAGCAAATCCACCAcaaaaaaatctcagtttcagcaaatccatcacatgtatg
gi|15 : attcagttaaactccctgctaagaagtatccaaacaggatgccaggagaaatctagaccagaagtttagtacataatcgagtgccttctgatgagctgcaacctcattgttaaactacatgGTT-TCTTGTCAACATTGAC----------------CACA--------------------AAATT----------------C--TA---CTG---T-----TTT-------TC--CATTCTA-----------------------------------AATCTCTAAA--TTTATTCATCTGAAA-TATCAGATTCACTAAATCca
gi|12 : ttaagtttatCT-----ACAACAAC----------------TACA--------------------AAAAT----------------C--TAATTCTAA--TATTGTTTTGTTTTTATC--AAATCTGCT--GT---------------------TTTTC---AATC-TAAAA--TCTACTGATCCTATG-TCACAGATT
gi|17 : ttactgttaaactacatgtttctttccaaccTGAC-----------------ACA--------------------AAAATGTAC------------CGGTA---CTGA--T-----TTTTTT---ATC--AAATCTACT--G------------------------TTTAAAAATC-CTCGA--TCTATTGATCTGAAA-TCTCA
gi|8 : actgcaaaaatctaaT----------------C--TA---CTAA--T-----TTTTTT---TTA--AAATCTACT--G----------------------TTTTT---AATC-CTAAA--TCTACTG
gi|14 : ttgtttagtttcggagtatcattttcttaatcagtcatatcatgattcaattgagctcactgccaaaaaacatcaaaataggatgctataaaaaatccagaaccgaagactattatatttataatagagtgcctgctgagctgcaagctcaacagtgactgtcactgaaattacagaaaaaatgtgagtataaatagatataggttatttt--T-----TTTGTT---GTC--ATTTCTACTCGGA---------------------CTG-----------CAAAATTCTACTGACAAAAAAATCTCAGTTTCAGCAAATCCATCACATG
gi|18 : catgagtttaacagaaataggttattttagttat--AAATCTGTT--G-----------------------TTTT-----TC----AA--TCTACTGATCTGGAA-TATCCAGCTCATCAAATCCATCACATGtatg
gi|19 : aaAA--TCTACTGATCTGAAA-CCTCAGATTCAGCAAATCCACCACATGtatg
gi|20 : TGCCGATTTGAAA-TCTCAGATTCAGCAAATCCATCACATGtatg
Alignments
lowQualScore : 1111 1111 1111111111111111 44444444444444444444444444444444444444444 1111111111 1111 1111111111
lowQualScore : 2 0 2 1 3 7777 55 55 8888888 1 8 3 1 1111 999999 888888 3 6666 44 6 3 2222 3 77777 7 8888888888888888 11111111111111111111111111111111111111111 4444444444 2 6 333 4444 2 5 2 555 2 1111111111 8888888 33
lowQualScore : . . . . . .... .. .. ....... . . . . .... ...... ...... . .... .. . . .... . ..... . ................ ......................................... .......... . . ... .... . . . ... . .......... ....... ..
lowQualScore : 0 1 0 0 6 7777 00 00 2222222 4 1 6 0 2222 666666 888888 1 5555 22 7 3 8888 1 11111 6 9999999999999999 00000000000000000000000000000000000000000 4444444444 9 6 777 0000 9 7 9 000 9 7777777777 1111111 77
consensus : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-AT----T--AT--A--T----ACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAA------AACGTGA------ATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T---ATTGTCGTT-TCT-----ACATTGACCGCAAA----------------AAT----------------C--TA--------------------CTGA--T-------T-TTTTTATC--AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
Reference ( family-3624 ) : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGANCAGAAGACT-AT----T--AT--A--T----ACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAA------AACATGA------ATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T---ATTGTTGTT-TCT-----ACATTGACCGCAAA----------------AAT----------------C--TA--------------------CTGA--T-------T-TTNTTATC--AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
gi|1 : AACTTATATTATGATTCATTTAAACTCCCTGCTAAGAAGCATCCAAGTAGAATGCCAGGGGAAATCTAGACCAGAAGACTAAT----T--AT--AATT----AATAGAGTGGCCTC-----AGT-----GCTTTT---TGAATGTCACTGAAATTACAG-ATAA------AACATGA------AT---AA-CAG----GACTTATATAAGTTC-TT
gi|1 : atcATTACA-AATAATTAATGAATACAA------ATAGAAA-TAATTATG--TTATTTTAGTTA-TTT-TT--ATTGCTGTT-TCT-----ACATTGACTGCAAA----------------AAT----------------C--TACTGGCAGATGCAAAAATCTACTGA--T-------T-TTTTTATC--AAATCTGCT--G-TTAT-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCCCgatgattacaaataattaatgaatacaaatagaaataattatgttattttagttatttttattgctgtttctacattgactgcaaaaatctactggcagatgcaaaaatctactgatttttttatcaaatctgctgttatttaatcccaaatctactgatctgaaatccc
gi|10 : atcaacttatattatgattcatttaaactccctgctaagaagcatccaagtagaatgccaggggaaatctagaccagaagactaattataattaatagagtggcctcagtgctttttgaatgtcactgaaattacagataaaacatgaataacaggacttatataagttcttgatgAAGTGATATCATGATTCAGTTAAGCTCCTTGCTTATAAGTATCTAAATAGAATGCTAGGAGAAACCTAGATCAGAAGACT-AT----T--AT--A--T----ACAAGAGTGTCGTC----------CAAGCTCACCAGTGAATGC------AATTTTAAAATAA------AATATGA------GTAGAAA-TAG----G--CTATTTTAGTTATTTT-T---ATTGTTATTATCT-----AC
gi|11 : gttaagtttcatagtattttataaatcAAGTCGTATCATGATTCAGTTA-TCTCCCTGCTCAGAAGTAGCCAAGTAGGATGCTAGGAGAAA-CTAGATAAGAAGA-T-AT----T--AT--A--T----ACTACAGTGCATTTTGATG---------CTCAACAGTGAATATCACTGAAATTATAGACTAA------AACATGA------ATAGCGGTTAG----G--TTATT
gi|12 : aatcCT-----ACAACAACTACAAA----------------AAT----------------C--TAATT-----------------CTAA--TATTGTTTTGTTTTTATC--AAATCTGCT--G-TT-T-TTCAATC---TA-A----------AATC-------TACTGATCCTATG--TCACAGATTaaaattaaaacatttcatt
gi|13 : ttactgttaaactacatgtttctttccaaccTAGACTAA------AACGTGA------ATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T----TTATTGAA-TAT-----AGATCG---GAAAA----------------AAT----------------A--TA--------------------TTGA-------------CGCAA----AAATCAACT--G---------AATC---CC-A----------AATC-------TACT----------------GATTCAGCAAATCTATCAC
gi|14 : A------ACAGAAA-TAG----G--TTATTTTAGTTATTTT-T---GTTGTCATT-TCT-----ACTCGGACTGCAAA----------------ATT----------------C--TA--------------------CTGA--
gi|14 : catgagttt--T-------T-TTGTTGTC--ATTTCTACTCGG-AC-T-GC-AA--------A----------ATTC-------TACTGA-CAAAAAAATCTCAGTTTCAGCAAATCCATCACATGcaaaaaaatctcagtttcagcaaatccatcacatgtatg
gi|15 : catgagtttaacagaaataggttattttagttatTGTT-TCTTGTCAACATTGACCACAAA----------------ATT----------------C--TA--------------------CTG---T-------T-TTTCCAT------TCTA--------------AATC---TCTA----------AATT-------TATTCATCTGAAA--TATCAGATTCACTAAATCtatg
gi|16 : ttaagtttaAAGACATATCATGATTCAGTTAAACTCCCTGCTAAGAAGAATCCAAGTAGGATGCTAAGAGAAATCTA
gi|17 : tttctgagtatcattttctaaatcTGAC-ACAAA----------------AATGTAC------------CGGTA--------------------CTGA--T-------T-TTTTTATC--AAATCTACT--G-TT-TAAA-AATC---CT-C----------GATC-------TATTGATCTGAAA--TCTCActga
gi|18 : actgcaaaaatctaa--AAATCTGTT--G-TT-T-TT---------C-A----------A-TC-------TACTGATCTGGAA--TATCCAGCTCATCAAATCCATCACATG
gi|19 : aa----------AATC-------TACTGATCTGAAA--CCTCAGATTCAGCAAATCCACCACATGtatg
gi|2 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTTACAAGTATCTAAATAGGATGCTAGGAGAAACCTAGATCAGAAGACT-ATTATAT--AT--A--T----ACTAGAGTGTCGTCTGATGAGCTCCAAGCTCACCAGTGAATGC------AATTATAGAATAA------AACACGA------GTAGAAA-TAG----G--TTATTTTAGTTA-TTTAT---ATTATTTTT-TCT-----ATGTTGACCGCTAA----------------AAT----------------A--TA--------------------CTGA-------------TGCAA----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGtatg
gi|20 : gttaagtttcatagtaccattttataaatc-------TGCCGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGta
gi|3 : taAAGTCGTATCATAATTCATTCAAGCTCTCTTCTAATAAGTATTCAAGAAGGATGCTAGGAGAAATCTAGTTCAGAAGACT-AT----T--AT--A--T----ACAAGAGTGTCGTCTGATGAGCTCCAAGCTCACTGGTGAATGC-----AAAT-ATAGAATAA------AACATGA------GTAGAAA-TAG----G--TTATTTTAGTTA-TTT-TC--ATTGCTGTT-TCT-----ACATTGACTTCAAA----------------AATATACTGAAGCAATAATC--TA--------------------CCGA--T-------T-TT-TTATC--AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TTCTGATTT-AAA--TCTCAGTTTCAGCAAATCTATCACATG
gi|4 : aatcAAGTCATATAATGATTCA-TTAAG--------------GTATCAAAATACGATGCTAGGGAAAATCTAGAGCAGAAGACT-AT----T--AT--A----------ATAGTGTCTTCTGATGAGCTGCAAGCTCAACAGAGAATGCCACTGACATTACAGAATTA------AACTTAA------ATAGAAA-TAG----G--TTAT-----TTA-TTC-T---ATTGTCGTT-TCT-----ACATTGACTGCAAA----------------AAT----------------A--TA--------------------CTGAGTT-------T-TTTTTATC--AAATCTACTTAT-TT-T-TT-TATCAAATC-AACTGTTTTTTAATCCTTATTCTACTGATCTGACA--TCCCAGATTAAGCAAATCCATCAt
gi|5 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAAAAATATCCAAGTAGGATGCTAGGAGAAATCTAGATCAGAAGACT-------T--GT--G--T----ACTAGAGTGCCTTCTGATGAGCTGCAAGCTCAACAGTGAATGCCACTGAAATTATAGAATAA------AACATTA------ATAGAAA-TAG----G--TTATTTTAGTTA-TTT-T---ACTGTCGTT-TCT-----ACATTGACTGCAAA----------------AAT----------------C--TA--------------------CTGA--T-------T-TTGTTATC--AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAGA--TCTCAGATTAAGCAAATCCATCAAATGtcac
gi|6 : aAAATAGGATGCTAGGAGAAATCTAGATCAGAAGCTT-AT----T--AT--A--T----TCTAGAGTGTTGTCTGATGAGCTCCAAACTCACCAGTGAATGC------AGTTGTAGAATAA------AACATGA------GTAGAAT-TAG----G--TTATTTTATTTA-TTT-TTTAATTGTTGTT-TTT-----ACATTGACCGCAAAAATAAACTGACGCAAAAAT----------------C--TA--------------------CTGA--T-------T-TTTTTATC--AAATCTACT--GATT-T-TT-AATC---TC-A----------AATC-------TACTTATTTGAAA--TCTCAGATTCAGTAAATCCATCACATG
gi|7 : AGTCATATCATCATTCAATTGAACTCCCTGCCAAGAAACATCAAAATAGGATGCTATAAGAAATCCAGAACAGAAGACT-AT----TTTATTTA--T----AATAGAGT-TC--CTGCTGAGCTGTGAGCTCAACAGTGACTGTCACTGAAATTACAGAAAAA------AATGTGA------GTATAAA-TAG---------ATATAGGTTA-TT-------------TT-TCT-----AC--T-------------------------AAT----------------T--T-----------------------------------T-TTTTTATA--AAATCTACT--GTTT-T-TT-AATC---CT-A----------AATC-------TACTGta
gi|8 : tgtttagtttcagagtatcattttctaaatcAGTCATATCATGATTCAATTGAGCTCACTGCCAAAAAACATCAAAATAGGATGCTATAAAAAATCCAGAACCGAAGACT-AT----T--AT--A--TTTATAATAGAGTGCC---TGCTGAGCTGCAAGCTCAACAGTGACTGTCACTGAAATTACAGAA-AA------AATGTGAGTATAAATAGATA-TAG----G--TTATTTT-------TC-T---ACTAATTTT-TTT--------TT-------AA----------------AAT----------------C--TA--------------------CTG-----------T-TTTTAATCCTAAATCTACT--G-
gi|9 : ttgtttagtttcggagtatcattttcttaatcATTCAGTTAAACTCCCTGCTAAGAAGTATCCAAACAGGATGCCAGGAGAAATCTAGACCAGAAGTTT-AG----T--AC--A--T----AATCGAGTGCCTTCTGATGAGCTGCAACCTCA
gi|9 : TT-T---CTTGTAGTT-TCT-----ACATTGACAACAAA----------------ACT----------------C--TT--------------------CTAA--T-------T-TT--TATT--AAATATACT--G-TT-CATT-AATC---CT-A----------AATC-------TACTAATCTAAAA--TCCCAGATTCAGCAAATCCACCACAttgttaaactacatgtttcttgtagtttctacattgacaacaaaactcttctaatttttattaaatatactgttcattaatcctaaatctactaatctaaaatcccagattcagcaaatccaccaca
Alignments
lowQualScore : 1111 1111 1111 444444444444444444444444444444444444444444444444444444444444 1111 1111111111
lowQualScore : 2 0 2 0 3 8888888 2222 55 1 1 5 3 1 1111 3 3 8888888 0 6 2 3 4444 3 3 1 0 7 111111111111111111111111111111111111111111111111111111111111 555 33 9999999 2 2 9999 4444 2 5 2 444 2 0000000000 7777777 33
lowQualScore : . . . . . ....... .... .. . . . . . .... . . ....... . . . . .... . . . . . ............................................................ ... .. ....... . . .... .... . . . ... . .......... ....... ..
lowQualScore : 0 1 0 6 6 1111111 7777 00 4 7 8 6 0 2222 5 1 5555555 8 2 9 1 8888 2 1 7 1 6 888888888888888888888888888888888888888888888888888888888888 000 77 3333333 9 9 3333 0000 7 3 7 777 7 9999999999 6666666 77
consensus : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGTAGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
Reference ( family-3624 ) : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAATAGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
gi|1 : AACTTATATTATGATTCATTTAAACTCCCTGCTAAGAAGCATCCAAGTAGAATGCCAGGGGAAATCTAGACCAGAAGACTAA--T----TA----TAATTAATAGAGTGGCCTC-----AGT-----GCTTTT---TGAATGTCACTGAAATTACAG-ATAAAACATGAAT---AA-CAG----GACTTATATAAGTTC-T-T
gi|1 : atcAATTAATGAATACAA-----ATAGAAA-TAATTATG--TTATTTTAGTTA-T-TT-TT--ATTGCTGTT-TCTACATTGACTGCAAAAATCTACTGGCAGATGCAAA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTGCT--G-TTAT-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCCCgatgattacaaataattaatgaatacaaatagaaataattatgttattttagttatttttattgctgtttctacattgactgcaaaaatctactggcagatgcaaaaatctactgatttttttatcaaatctgctgttatttaatcccaaatctactgatctgaaatccc
gi|10 : atcaacttatattatgattcatttaaactccctgctaagaagcatccaagtagaatgccaggggaaatctagaccagaagactaattataattaatagagtggcctcagtgctttttgaatgtcactgaaattacagataaaacatgaataacaggacttatataagttcttgatgattacaaatAAGTGATATCATGATTCAGTTAAGCTCCTTGCTTATAAGTATCTAAATAGAATGCTAGGAGAAACCTAGATCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTC----------CAAGCTCACCAGTGAATGC------AATTTTAAAATAAAATATGAGTAGAAA-TAG----G--CTATTTTAGTTATT-TT-T---ATTGTTATTATCTAC
gi|11 : gttaagtttcatagtattttataaatcAAGTCGTATCATGATTCAGTTA-TCTCCCTGCTCAGAAGTAGCCAAGTAGGATGCTAGGAGAAA-CTAGATAAGAAGA-T-A--T----TA----TA--TACTACAGTGCATTTTGATG---------CTCAACAGTGAATATCACTGAAATTATAGACTAAAACATGAATAGCGGTTAG----G--TTATT
gi|12 : aatcCTACAACAACTACA--------------------AA----------------AAT----------------C--TAATTCTAA--TATTGTTTTGTTT-TTATC----AAATCTGCT--G-TT-T-TTCAATC---TA-A----------AATC-------TACTGATCCTATG--TCACAGATTaaaattaaaacatttcatt
gi|13 : ttactgttaaactacatgtttctttccaaccTAGACTAAAACGTGAATAGAAA-TAG----G--TTATTTTAGTTA-T-TT-T----TTATTGAA-TATAGATCG---GAA--------------------AA----------------AAT----------------A--TA---TTGA--------------------CGCAAAAATCAACT--G---------AATC---CC-A----------AATC-------TACT----------------GATTCAGCAAATCTATCAC
gi|14 : AACAGAAA-TAG----G--TTATTTTAGTTATT-TT-T---GTTGTCATT-TCTACTCGGACTGCA--------------------AA----------------ATT----------------C--TA---CTGA--
gi|14 : catgagtttA--T-------T-TTTGTTGTC----ATTTCTACTCGG-AC-T-GC-AA--------A----------ATTC-------TACTGA-CAAAAAAATCTCAGTTTCAGCAAATCCATCACATGcaaaaaaatctcagtttcagcaaatccatcacatgtatg
gi|15 : catgagtttaacagaaataggttattttagttTTA-TGTT-T---CTTGTCA------ACATTGACCACA--------------------AA----------------ATT----------------C--TA---CTG---T-------T-TTT-CCAT--------TCTA--------------AATC---TCTA----------AATT-------TATTCATCTGAAA--TATCAGATTCACTAAATCtatg
gi|16 : ttaagtAAGACATATCATGATTCAGTTAAACTCCCTGCTAAGAAGAATCCAAGTAGGATGCTAAGAGAAATCTA
gi|17 : tttctgagtatcattttctaaatcTGAC-ACA--------------------AA----------------AATGTAC------------CGGTA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-TAAA-AATC---CT-C----------GATC-------TATTGATCTGAAA--TCTCActga
gi|18 : actgcaaaaatctaa----AAATCTGTT--G-TT-T-TT---------C-A----------A-TC-------TACTGATCTGGAA--TATCCAGCTCATCAAATCCATCACATG
gi|19 : aa----------AATC-------TACTGATCTGAAA--CCTCAGATTCAGCAAATCCACCACATGtatg
gi|2 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTTACAAGTATCTAAATAGGATGCTAGGAGAAACCTAGATCAGAAGACT-A--TTATATA----TA--TACTAGAGTGTCGTCTGATGAGCTCCAAGCTCACCAGTGAATGC------AATTATAGAATAAAACACGAGTAGAAA-TAG----G--TTATTTTAGTTA-T-TTAT---ATTATTTTT-TCTATGTTGACCGCT--------------------AA----------------AAT----------------A--TA---CTGA--T----------------GCAA--AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGtatg
gi|20 : gttaagtttcatagtaccattttataaatc-------TGCCGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGta
gi|3 : taAAGTCGTATCATAATTCATTCAAGCTCTCTTCTAATAAGTATTCAAGAAGGATGCTAGGAGAAATCTAGTTCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTCTGATGAGCTCCAAGCTCACTGGTGAATGC-----AAAT-ATAGAATAAAACATGAGTAGAAA-TAG----G--TTATTTTAGTTA-T-TT-TC--ATTGCTGTT-TCTACATTGACTTCA--------------------AA----------------AATATACTGAAGCAATAATC--TA---CCGA--T-------T-TT--TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TTCTGATTT-AAA--TCTCAGTTTCAGCAAATCTATCACATG
gi|4 : aatcAAGTCATATAATGATTCA-TTAAG--------------GTATCAAAATACGATGCTAGGGAAAATCTAGAGCAGAAGACT-A--T----TA----TA------ATAGTGTCTTCTGATGAGCTGCAAGCTCAACAGAGAATGCCACTGACATTACAGAATTAAACTTAAATAGAAA-TAG----G--TTAT-----TTA-T-TC-T---ATTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------A--TA---CTGAGTT-------T-TTT-TTATC----AAATCTACTTAT-TT-T-TT-TATCAAATC-AACTGTTTTTTAATCCTTATTCTACTGATCTGACA--TCCCAGATTAAGCAAATCCATCAt
gi|5 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAAAAATATCCAAGTAGGATGCTAGGAGAAATCTAGATCAGAAGACT---------TG----TG--TACTAGAGTGCCTTCTGATGAGCTGCAAGCTCAACAGTGAATGCCACTGAAATTATAGAATAAAACATTAATAGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ACTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTG-TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAGA--TCTCAGATTAAGCAAATCCATCAAATGtcac
gi|6 : aAAATAGGATGCTAGGAGAAATCTAGATCAGAAGCTT-A--T----TA----TA--TTCTAGAGTGTTGTCTGATGAGCTCCAAACTCACCAGTGAATGC------AGTTGTAGAATAAAACATGAGTAGAAT-TAG----G--TTATTTTATTTA-T-TT-TTTAATTGTTGTT-TTTACATTGACCGCA--------------------AAAATAAACTGACGCAAAAAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--GATT-T-TT-AATC---TC-A----------AATC-------TACTTATTTGAAA--TCTCAGATTCAGTAAATCCATCACATG
gi|7 : AGTCATATCATCATTCAATTGAACTCCCTGCCAAGAAACATCAAAATAGGATGCTATAAGAAATCCAGAACAGAAGACT-ATTT----TATT--TA--TAATAGAGT-TC--CTGCTGAGCTGTGAGCTCAACAGTGACTGTCACTGAAATTACAGAAAAAAATGTGAGTATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTAC-T----------------------------------------------AAT----------------T-------------T-------T-TTT-TTATA----AAATCTACT--GTTT-T-TT-AATC---CT-A----------AATC-------TACTGta
gi|8 : tgtttagtttcagagtatcattttctaaatcAGTCATATCATGATTCAATTGAGCTCACTGCCAAAAAACATCAAAATAGGATGCTATAAAAAATCCAGAACCGAAGACT-A--T----TATATTTA--TAATAGAGTG---CCTGCTGAGCTGCAAGCTCAACAGTGACTGTCACTGAAATTACAGAA-AAAATGTGAGTATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTAC----------------------------------------------------------------------------TAA--T-------T-TTT-TTTTA----AAATCTACT--G-TT-T-TT-AATC---CT-A----------AATC-------TACTG
gi|9 : ttgtttagtttcggagtatcattttcttaatcATTCAGTTAAACTCCCTGCTAAGAAGTATCCAAACAGGATGCCAGGAGAAATCTAGACCAGAAGTTT-A--G----TA----CA--TAATCGAGTGCCTTCTGATGAGCTGCAACCTCA
gi|9 : -TT-T---CTTGTAGTT-TCTACATTGACAACA--------------------AA----------------ACT----------------C--TT---CTAA--T-------T-TTT---ATT----AAATATACT--G-TT-CATT-AATC---CT-A----------AATC-------TACTAATCTAAAA--TCCCAGATTCAGCAAATCCACCACAttgttaaactacatgtttcttgtagtttctacattgacaacaaaactcttctaatttttattaaatatactgttcattaatcctaaatctactaatctaaaatcccagattcagcaaatccaccaca
Alignments
lowQualScore : 1111 1111 1111 444444444444444444444444444444444444444444444444444444444444 1111 1111111111
lowQualScore : 2 0 2 0 3 8888888 2222 55 1 1 5 3 1 1111 3 77777 3 8888888 0 3 2 3 7777 3 3 0 7 111111111111111111111111111111111111111111111111111111111111 555 33 9999999 2 2 9999 4444 2 5 2 444 2 0000000000 7777777 33
lowQualScore : . . . . . ....... .... .. . . . . . .... . ..... . ....... . . . . .... . . . . ............................................................ ... .. ....... . . .... .... . . . ... . .......... ....... ..
lowQualScore : 0 1 0 6 6 1111111 7777 00 4 7 8 6 0 2222 7 77777 1 5555555 8 1 9 1 9999 2 1 1 6 888888888888888888888888888888888888888888888888888888888888 000 77 3333333 9 9 3333 0000 7 3 7 777 7 9999999999 6666666 77
consensus : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
Reference ( family-3624 ) : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
gi|1 : AACTTATATTATGATTCATTTAAACTCCCTGCTAAGAAGCATCCAAGTAGAATGCCAGGGGAAATCTAGACCAGAAGACTAA--T----TA----TAATTAATAGAGTGGCCTC-----AGT-----GCTTTT---TGAATGTCACTGAAATTACAG-ATAAAACATGAAT--------AA-CAG----GACTTATATAAGTTC-T-T
gi|1 : atcAATTAATGAATACAA-----AT-----AGAAA-TAATTATG--TTATTTTAGTTA-T-TT-TT--ATTGCTGTT-TCTACATTGACTGCAAAAATCTACTGGCAGATGCAAA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTGCT--G-TTAT-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCCCgatgattacaaataattaatgaatacaaatagaaataattatgttattttagttatttttattgctgtttctacattgactgcaaaaatctactggcagatgcaaaaatctactgatttttttatcaaatctgctgttatttaatcccaaatctactgatctgaaatccc
gi|10 : atcaacttatattatgattcatttaaactccctgctaagaagcatccaagtagaatgccaggggaaatctagaccagaagactaattataattaatagagtggcctcagtgctttttgaatgtcactgaaattacagataaaacatgaataacaggacttatataagttcttgatgattacaaatAAGTGATATCATGATTCAGTTAAGCTCCTTGCTTATAAGTATCTAAATAGAATGCTAGGAGAAACCTAGATCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTC----------CAAGCTCACCAGTGAATGC------AATTTTAAAATAAAATATGAGT-----AGAAA-TAG----G--CTATTTTAGTTATT-TT-T---ATTGTTATTATCTAC
gi|11 : gttaagtttcatagtattttataaatcAAGTCGTATCATGATTCAGTTA-TCTCCCTGCTCAGAAGTAGCCAAGTAGGATGCTAGGAGAAA-CTAGATAAGAAGA-T-A--T----TA----TA--TACTACAGTGCATTTTGATG---------CTCAACAGTGAATATCACTGAAATTATAGACTAAAACATGAAT-----AGCGGTTAG----G--TTATT
gi|12 : aatcCTACAACAACTACA--------------------AA----------------AAT----------------C--TAATTCTAA--TATTGTTTTGTTT-TTATC----AAATCTGCT--G-TT-T-TTCAATC---TA-A----------AATC-------TACTGATCCTATG--TCACAGATTaaaattaaaacatttcatt
gi|13 : ttactgttaaactacatgtttctttccaaccTAGACTAAAACGTGAAT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T----TTATTGAA-TATAGATCG---GAA--------------------AA----------------AAT----------------A--TA---TTGA--------------------CGCAAAAATCAACT--G---------AATC---CC-A----------AATC-------TACT----------------GATTCAGCAAATCTATCAC
gi|14 : CATGAGTTTAACAGAAA-TAG----G--TTATTTTAGTTA-T-TT-TT--GTTGTCATT-TCTACTCGGACTGCA--------------------AA----------------ATT----------------C--TA---CTGA--
gi|14 : A--T-------T-TTTGTTGTC----ATTTCTACTCGG-AC-T-GC-AA--------A----------ATTC-------TACTGA-CAAAAAAATCTCAGTTTCAGCAAATCCATCACATGcaaaaaaatctcagtttcagcaaatccatcacatgtatg
gi|15 : catgagtttaacagaaataggttattttagttTTA-TGTT-T---CTTGTCA------ACATTGACCACA--------------------AA----------------ATT----------------C--TA---CTG---T-------T-TTT-CCAT--------TCTA--------------AATC---TCTA----------AATT-------TATTCATCTGAAA--TATCAGATTCACTAAATCtatg
gi|16 : ttaagtAAGACATATCATGATTCAGTTAAACTCCCTGCTAAGAAGAATCCAAGTAGGATGCTAAGAGAAATCTA
gi|17 : tttctgagtatcattttctaaatcTGAC-ACA--------------------AA----------------AATGTAC------------CGGTA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-TAAA-AATC---CT-C----------GATC-------TATTGATCTGAAA--TCTCActga
gi|18 : actgcaaaaatctaa----AAATCTGTT--G-TT-T-TT---------C-A----------A-TC-------TACTGATCTGGAA--TATCCAGCTCATCAAATCCATCACATG
gi|19 : aa----------AATC-------TACTGATCTGAAA--CCTCAGATTCAGCAAATCCACCACATGtatg
gi|2 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTTACAAGTATCTAAATAGGATGCTAGGAGAAACCTAGATCAGAAGACT-A--TTATATA----TA--TACTAGAGTGTCGTCTGATGAGCTCCAAGCTCACCAGTGAATGC------AATTATAGAATAAAACACGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TTAT---ATTATTTTT-TCTATGTTGACCGCT--------------------AA----------------AAT----------------A--TA---CTGA--T----------------GCAA--AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGtatg
gi|20 : gttaagtttcatagtaccattttataaatc-------TGCCGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGta
gi|3 : taAAGTCGTATCATAATTCATTCAAGCTCTCTTCTAATAAGTATTCAAGAAGGATGCTAGGAGAAATCTAGTTCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTCTGATGAGCTCCAAGCTCACTGGTGAATGC-----AAAT-ATAGAATAAAACATGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-TC--ATTGCTGTT-TCTACATTGACTTCA--------------------AA----------------AATATACTGAAGCAATAATC--TA---CCGA--T-------T-TT--TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TTCTGATTT-AAA--TCTCAGTTTCAGCAAATCTATCACATG
gi|4 : aatcAAGTCATATAATGATTCA-TTAAG--------------GTATCAAAATACGATGCTAGGGAAAATCTAGAGCAGAAGACT-A--T----TA----TA------ATAGTGTCTTCTGATGAGCTGCAAGCTCAACAGAGAATGCCACTGACATTACAGAATTAAACTTAAAT-----AGAAA-TAG----G--TTAT-----TTA-T-TC-T---ATTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------A--TA---CTGAGTT-------T-TTT-TTATC----AAATCTACTTAT-TT-T-TT-TATCAAATC-AACTGTTTTTTAATCCTTATTCTACTGATCTGACA--TCCCAGATTAAGCAAATCCATCAt
gi|5 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAAAAATATCCAAGTAGGATGCTAGGAGAAATCTAGATCAGAAGACT---------TG----TG--TACTAGAGTGCCTTCTGATGAGCTGCAAGCTCAACAGTGAATGCCACTGAAATTATAGAATAAAACATTAAT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ACTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTG-TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAGA--TCTCAGATTAAGCAAATCCATCAAATGtcac
gi|6 : aAAATAGGATGCTAGGAGAAATCTAGATCAGAAGCTT-A--T----TA----TA--TTCTAGAGTGTTGTCTGATGAGCTCCAAACTCACCAGTGAATGC------AGTTGTAGAATAAAACATGAGT-----AGAAT-TAG----G--TTATTTTATTTA-T-TT-TTTAATTGTTGTT-TTTACATTGACCGCA--------------------AAAATAAACTGACGCAAAAAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--GATT-T-TT-AATC---TC-A----------AATC-------TACTTATTTGAAA--TCTCAGATTCAGTAAATCCATCACATG
gi|7 : AGTCATATCATCATTCAATTGAACTCCCTGCCAAGAAACATCAAAATAGGATGCTATAAGAAATCCAGAACAGAAGACT-ATTT----TATT--TA--TAATAGAGT-TC--CTGCTGAGCTGTGAGCTCAACAGTGACTGTCACTGAAATTACAGAAAAAAATGTGAGT-----ATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTAC-T----------------------------------------------AAT----------------T-------------T-------T-TTT-TTATA----AAATCTACT--GTTT-T-TT-AATC---CT-A----------AATC-------TACTGta
gi|8 : tgtttagtttcagagtatcattttctaaatcAGTCATATCATGATTCAATTGAGCTCACTGCCAAAAAACATCAAAATAGGATGCTATAAAAAATCCAGAACCGAAGACT-A--T----TATATTTA--TAATAGAGTG---CCTGCTGAGCTGCAAGCTCAACAGTGACTGTCACTGAAATTACAGAA-AAAATGTGAGT-----ATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTA----------------------------------------------------------------------------CTAA--T-------T-TTT-TTTTA----AAATCTACT--G-TT-T-TT-AATC---CT-A----------AATC-------TACTG
gi|9 : ttgtttagtttcggagtatcattttcttaatcATTCAGTTAAACTCCCTGCTAAGAAGTATCCAAACAGGATGCCAGGAGAAATCTAGACCAGAAGTTT-A--G----TA----CA--TAATCGAGTGCCTTCTGATGAGCTGCAACCTCA
gi|9 : -TT-T---CTTGTAGTT-TCTACATTGACAACA--------------------AA----------------ACT----------------C--TT---CTAA--T-------T-TTT---ATT----AAATATACT--G-TT-CATT-AATC---CT-A----------AATC-------TACTAATCTAAAA--TCCCAGATTCAGCAAATCCACCACAttgttaaactacatgtttcttgtagtttctacattgacaacaaaactcttctaatttttattaaatatactgttcattaatcctaaatctactaatctaaaatcccagattcagcaaatccaccaca
Alignments
lowQualScore : 1111 1111 1111 444444444444444444444444444444444444444444444444444444444444 1111 1111111111
lowQualScore : 2 0 2 0 3 8888888 2222 55 1 1 5 3 1 1111 3 77777 3 8888888 0 3 2 3 7777 3 3 0 7 111111111111111111111111111111111111111111111111111111111111 555 33 9999999 2 2 9999 4444 2 5 2 444 2 0000000000 7777777 33
lowQualScore : . . . . . ....... .... .. . . . . . .... . ..... . ....... . . . . .... . . . . ............................................................ ... .. ....... . . .... .... . . . ... . .......... ....... ..
lowQualScore : 0 1 0 6 6 1111111 7777 00 4 7 8 6 0 2222 7 77777 1 5555555 8 1 9 1 9999 2 1 1 6 888888888888888888888888888888888888888888888888888888888888 000 77 3333333 9 9 3333 0000 7 3 7 777 7 9999999999 6666666 77
consensus : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
Reference ( family-3624 ) : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
gi|1 : AACTTATATTATGATTCATTTAAACTCCCTGCTAAGAAGCATCCAAGTAGAATGCCAGGGGAAATCTAGACCAGAAGACTAA--T----TA----TAATTAATAGAGTGGCCTC-----AGT-----GCTTTT---TGAATGTCACTGAAATTACAG-ATAAAACATGAAT--------AA-CAG----GACTTATATAAGTTC-T-T
gi|1 : atcAATTAATGAATACAA-----AT-----AGAAA-TAATTATG--TTATTTTAGTTA-T-TT-TT--ATTGCTGTT-TCTACATTGACTGCAAAAATCTACTGGCAGATGCAAA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTGCT--G-TTAT-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCCCgatgattacaaataattaatgaatacaaatagaaataattatgttattttagttatttttattgctgtttctacattgactgcaaaaatctactggcagatgcaaaaatctactgatttttttatcaaatctgctgttatttaatcccaaatctactgatctgaaatccc
gi|10 : atcaacttatattatgattcatttaaactccctgctaagaagcatccaagtagaatgccaggggaaatctagaccagaagactaattataattaatagagtggcctcagtgctttttgaatgtcactgaaattacagataaaacatgaataacaggacttatataagttcttgatgattacaaatAAGTGATATCATGATTCAGTTAAGCTCCTTGCTTATAAGTATCTAAATAGAATGCTAGGAGAAACCTAGATCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTC----------CAAGCTCACCAGTGAATGC------AATTTTAAAATAAAATATGAGT-----AGAAA-TAG----G--CTATTTTAGTTATT-TT-T---ATTGTTATTATCTAC
gi|11 : gttaagtttcatagtattttataaatcAAGTCGTATCATGATTCAGTTA-TCTCCCTGCTCAGAAGTAGCCAAGTAGGATGCTAGGAGAAA-CTAGATAAGAAGA-T-A--T----TA----TA--TACTACAGTGCATTTTGATG---------CTCAACAGTGAATATCACTGAAATTATAGACTAAAACATGAAT-----AGCGGTTAG----G--TTATT
gi|12 : aatcCTACAACAACTACA--------------------AA----------------AAT----------------C--TAATTCTAA--TATTGTTTTGTTT-TTATC----AAATCTGCT--G-TT-T-TTCAATC---TA-A----------AATC-------TACTGATCCTATG--TCACAGATTaaaattaaaacatttcatt
gi|13 : ttactgttaaactacatgtttctttccaaccTAGACTAAAACGTGAAT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T----TTATTGAA-TATAGATCG---GAA--------------------AA----------------AAT----------------A--TA---TTGA--------------------CGCAAAAATCAACT--G---------AATC---CC-A----------AATC-------TACT----------------GATTCAGCAAATCTATCAC
gi|14 : CATGAGTTTAACAGAAA-TAG----G--TTATTTTAGTTA-T-TT-TT--GTTGTCATT-TCTACTCGGACTGCA--------------------AA----------------ATT----------------C--TA---CTGA--
gi|14 : A--T-------T-TTTGTTGTC----ATTTCTACTCGG-AC-T-GC-AA--------A----------ATTC-------TACTGA-CAAAAAAATCTCAGTTTCAGCAAATCCATCACATGcaaaaaaatctcagtttcagcaaatccatcacatgtatg
gi|15 : catgagtttaacagaaataggttattttagttTTA-TGTT-T---CTTGTCA------ACATTGACCACA--------------------AA----------------ATT----------------C--TA---CTG---T-------T-TTT-CCAT--------TCTA--------------AATC---TCTA----------AATT-------TATTCATCTGAAA--TATCAGATTCACTAAATCtatg
gi|16 : ttaagtAAGACATATCATGATTCAGTTAAACTCCCTGCTAAGAAGAATCCAAGTAGGATGCTAAGAGAAATCTA
gi|17 : tttctgagtatcattttctaaatcTGAC-ACA--------------------AA----------------AATGTAC------------CGGTA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-TAAA-AATC---CT-C----------GATC-------TATTGATCTGAAA--TCTCActga
gi|18 : actgcaaaaatctaa----AAATCTGTT--G-TT-T-TT---------C-A----------A-TC-------TACTGATCTGGAA--TATCCAGCTCATCAAATCCATCACATG
gi|19 : aa----------AATC-------TACTGATCTGAAA--CCTCAGATTCAGCAAATCCACCACATGtatg
gi|2 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTTACAAGTATCTAAATAGGATGCTAGGAGAAACCTAGATCAGAAGACT-A--TTATATA----TA--TACTAGAGTGTCGTCTGATGAGCTCCAAGCTCACCAGTGAATGC------AATTATAGAATAAAACACGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TTAT---ATTATTTTT-TCTATGTTGACCGCT--------------------AA----------------AAT----------------A--TA---CTGA--T----------------GCAA--AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGtatg
gi|20 : gttaagtttcatagtaccattttataaatc-------TGCCGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGta
gi|3 : taAAGTCGTATCATAATTCATTCAAGCTCTCTTCTAATAAGTATTCAAGAAGGATGCTAGGAGAAATCTAGTTCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTCTGATGAGCTCCAAGCTCACTGGTGAATGC-----AAAT-ATAGAATAAAACATGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-TC--ATTGCTGTT-TCTACATTGACTTCA--------------------AA----------------AATATACTGAAGCAATAATC--TA---CCGA--T-------T-TT--TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TTCTGATTT-AAA--TCTCAGTTTCAGCAAATCTATCACATG
gi|4 : aatcAAGTCATATAATGATTCA-TTAAG--------------GTATCAAAATACGATGCTAGGGAAAATCTAGAGCAGAAGACT-A--T----TA----TA------ATAGTGTCTTCTGATGAGCTGCAAGCTCAACAGAGAATGCCACTGACATTACAGAATTAAACTTAAAT-----AGAAA-TAG----G--TTAT-----TTA-T-TC-T---ATTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------A--TA---CTGAGTT-------T-TTT-TTATC----AAATCTACTTAT-TT-T-TT-TATCAAATC-AACTGTTTTTTAATCCTTATTCTACTGATCTGACA--TCCCAGATTAAGCAAATCCATCAt
gi|5 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAAAAATATCCAAGTAGGATGCTAGGAGAAATCTAGATCAGAAGACT---------TG----TG--TACTAGAGTGCCTTCTGATGAGCTGCAAGCTCAACAGTGAATGCCACTGAAATTATAGAATAAAACATTAAT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ACTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTG-TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAGA--TCTCAGATTAAGCAAATCCATCAAATGtcac
gi|6 : aAAATAGGATGCTAGGAGAAATCTAGATCAGAAGCTT-A--T----TA----TA--TTCTAGAGTGTTGTCTGATGAGCTCCAAACTCACCAGTGAATGC------AGTTGTAGAATAAAACATGAGT-----AGAAT-TAG----G--TTATTTTATTTA-T-TT-TTTAATTGTTGTT-TTTACATTGACCGCA--------------------AAAATAAACTGACGCAAAAAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--GATT-T-TT-AATC---TC-A----------AATC-------TACTTATTTGAAA--TCTCAGATTCAGTAAATCCATCACATG
gi|7 : AGTCATATCATCATTCAATTGAACTCCCTGCCAAGAAACATCAAAATAGGATGCTATAAGAAATCCAGAACAGAAGACT-ATTT----TATT--TA--TAATAGAGT-TC--CTGCTGAGCTGTGAGCTCAACAGTGACTGTCACTGAAATTACAGAAAAAAATGTGAGT-----ATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTAC-T----------------------------------------------AAT----------------T-------------T-------T-TTT-TTATA----AAATCTACT--GTTT-T-TT-AATC---CT-A----------AATC-------TACTGta
gi|8 : tgtttagtttcagagtatcattttctaaatcAGTCATATCATGATTCAATTGAGCTCACTGCCAAAAAACATCAAAATAGGATGCTATAAAAAATCCAGAACCGAAGACT-A--T----TATATTTA--TAATAGAGTG---CCTGCTGAGCTGCAAGCTCAACAGTGACTGTCACTGAAATTACAGAA-AAAATGTGAGT-----ATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTA----------------------------------------------------------------------------CTAA--T-------T-TTT-TTTTA----AAATCTACT--G-TT-T-TT-AATC---CT-A----------AATC-------TACTG
gi|9 : ttgtttagtttcggagtatcattttcttaatcATTCAGTTAAACTCCCTGCTAAGAAGTATCCAAACAGGATGCCAGGAGAAATCTAGACCAGAAGTTT-A--G----TA----CA--TAATCGAGTGCCTTCTGATGAGCTGCAACCTCA
gi|9 : -TT-T---CTTGTAGTT-TCTACATTGACAACA--------------------AA----------------ACT----------------C--TT---CTAA--T-------T-TTT---ATT----AAATATACT--G-TT-CATT-AATC---CT-A----------AATC-------TACTAATCTAAAA--TCCCAGATTCAGCAAATCCACCACAttgttaaactacatgtttcttgtagtttctacattgacaacaaaactcttctaatttttattaaatatactgttcattaatcctaaatctactaatctaaaatcccagattcagcaaatccaccaca
blockSeqs : G T . TTATA TATT . C T G C C CACT A TTAAC T TTATG T G A TTAA T A T AAAATATACTGAAGCAATAATC ATT GT ATTGTTT G G GCAA CGG . A C AAA T ACTGTTTTTT CTTATTC AA
blockSeqs : G G . TTT TT . C C T C A CACT A . . G . . . TG T . T AAAATAAACTGACGCAAAAATC . . . . . AA TAT . A . . . . . .
blockSeqs : G G . T . . C T G G C CACT G . . G . . . CA C . C AAAATGTACCGG . . . . . . GA . . . . . . . .
blockSeqs : G C . T . . C T G G C CACT A . . G . . . A C . C AAAATC . . . . . . GA . . . . . . . .
blockSeqs : T T . T . . C T T C A CACT A . . G . . . C T . T AAAATA . . . . . . GA . . . . . . . .
blockSeqs : G A . T . . C C T G A . A . . G . . . A T . T AAATTC . . . . . . GA . . . . . . . .
blockSeqs : A G . T . . A T G G C . T . . G . . . A C . T AAATTC . . . . . . GT . . . . . . . .
blockSeqs : A A . T . . A T T G A . A . . G . . . A C . C AAAATA . . . . . . G . . . . . . . .
blockSeqs : G G . G . . A C . . A . A . . G . . . C T . A AAAATA . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . G . . G . . . . A . . AAAATC . . . . . . G . . . . . . . .
blockSeqs : G . . . . . . . . . . AAACTC . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . . AATT . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : ** G****** A***
originalCons : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
finalCons : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAGG------TTATTTTAGTTA-T-TT-TA---TTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
Alignments
lowQualScore : 1111 1111 1111 444444444444444444444444444444444444444444444444444444444444 1111 1111111111
lowQualScore : 2 0 2 0 3 8888888 2222 55 1 1 5 3 1 1111 3 77777 3 8888888 0 3 2 3 7777 3 3 0 7 111111111111111111111111111111111111111111111111111111111111 555 33 9999999 2 2 9999 4444 2 5 2 444 2 0000000000 7777777 33
lowQualScore : . . . . . ....... .... .. . . . . . .... . ..... . ....... . . . . .... . . . . ............................................................ ... .. ....... . . .... .... . . . ... . .......... ....... ..
lowQualScore : 0 1 0 6 6 1111111 7777 00 4 7 8 6 0 2222 7 77777 1 5555555 8 1 9 1 9999 2 1 1 6 888888888888888888888888888888888888888888888888888888888888 000 77 3333333 9 9 3333 0000 7 3 7 777 7 9999999999 6666666 77
consensus : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
Reference ( family-3624 ) : NAAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAGAAGTATCCAAATAGGATGCTAGGAGAAATCTAGATCAGAAGACT-A--T----TA----TA--TACTAGAGTGTCNTCTGATGAGCTGCAAGCTCANCAGTGAATGCCACTGAAATTATAGAATAAAACGTGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ATTGTCGTT-TCTACATTGACCGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-T-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCTCAGATTCAGCAAATCCATCACATG
gi|1 : AACTTATATTATGATTCATTTAAACTCCCTGCTAAGAAGCATCCAAGTAGAATGCCAGGGGAAATCTAGACCAGAAGACTAA--T----TA----TAATTAATAGAGTGGCCTC-----AGT-----GCTTTT---TGAATGTCACTGAAATTACAG-ATAAAACATGAAT--------AA-CAG----GACTTATATAAGTTC-T-T
gi|1 : atcAATTAATGAATACAA-----AT-----AGAAA-TAATTATG--TTATTTTAGTTA-T-TT-TT--ATTGCTGTT-TCTACATTGACTGCAAAAATCTACTGGCAGATGCAAA----------------AAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTGCT--G-TTAT-TT-AATC---CC-A----------AATC-------TACTGATCTGAAA--TCCCgatgattacaaataattaatgaatacaaatagaaataattatgttattttagttatttttattgctgtttctacattgactgcaaaaatctactggcagatgcaaaaatctactgatttttttatcaaatctgctgttatttaatcccaaatctactgatctgaaatccc
gi|10 : atcaacttatattatgattcatttaaactccctgctaagaagcatccaagtagaatgccaggggaaatctagaccagaagactaattataattaatagagtggcctcagtgctttttgaatgtcactgaaattacagataaaacatgaataacaggacttatataagttcttgatgattacaaatAAGTGATATCATGATTCAGTTAAGCTCCTTGCTTATAAGTATCTAAATAGAATGCTAGGAGAAACCTAGATCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTC----------CAAGCTCACCAGTGAATGC------AATTTTAAAATAAAATATGAGT-----AGAAA-TAG----G--CTATTTTAGTTATT-TT-T---ATTGTTATTATCTAC
gi|11 : gttaagtttcatagtattttataaatcAAGTCGTATCATGATTCAGTTA-TCTCCCTGCTCAGAAGTAGCCAAGTAGGATGCTAGGAGAAA-CTAGATAAGAAGA-T-A--T----TA----TA--TACTACAGTGCATTTTGATG---------CTCAACAGTGAATATCACTGAAATTATAGACTAAAACATGAAT-----AGCGGTTAG----G--TTATT
gi|12 : aatcCTACAACAACTACA--------------------AA----------------AAT----------------C--TAATTCTAA--TATTGTTTTGTTT-TTATC----AAATCTGCT--G-TT-T-TTCAATC---TA-A----------AATC-------TACTGATCCTATG--TCACAGATTaaaattaaaacatttcatt
gi|13 : ttactgttaaactacatgtttctttccaaccTAGACTAAAACGTGAAT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T----TTATTGAA-TATAGATCG---GAA--------------------AA----------------AAT----------------A--TA---TTGA--------------------CGCAAAAATCAACT--G---------AATC---CC-A----------AATC-------TACT----------------GATTCAGCAAATCTATCAC
gi|14 : CATGAGTTTAACAGAAA-TAG----G--TTATTTTAGTTA-T-TT-TT--GTTGTCATT-TCTACTCGGACTGCA--------------------AA----------------ATT----------------C--TA---CTGA--
gi|14 : A--T-------T-TTTGTTGTC----ATTTCTACTCGG-AC-T-GC-AA--------A----------ATTC-------TACTGA-CAAAAAAATCTCAGTTTCAGCAAATCCATCACATGcaaaaaaatctcagtttcagcaaatccatcacatgtatg
gi|15 : catgagtttaacagaaataggttattttagttTTA-TGTT-T---CTTGTCA------ACATTGACCACA--------------------AA----------------ATT----------------C--TA---CTG---T-------T-TTT-CCAT--------TCTA--------------AATC---TCTA----------AATT-------TATTCATCTGAAA--TATCAGATTCACTAAATCtatg
gi|16 : ttaagtAAGACATATCATGATTCAGTTAAACTCCCTGCTAAGAAGAATCCAAGTAGGATGCTAAGAGAAATCTA
gi|17 : tttctgagtatcattttctaaatcTGAC-ACA--------------------AA----------------AATGTAC------------CGGTA---CTGA--T-------T-TTT-TTATC----AAATCTACT--G-TT-TAAA-AATC---CT-C----------GATC-------TATTGATCTGAAA--TCTCActga
gi|18 : actgcaaaaatctaa----AAATCTGTT--G-TT-T-TT---------C-A----------A-TC-------TACTGATCTGGAA--TATCCAGCTCATCAAATCCATCACATG
gi|19 : aa----------AATC-------TACTGATCTGAAA--CCTCAGATTCAGCAAATCCACCACATGtatg
gi|2 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTTACAAGTATCTAAATAGGATGCTAGGAGAAACCTAGATCAGAAGACT-A--TTATATA----TA--TACTAGAGTGTCGTCTGATGAGCTCCAAGCTCACCAGTGAATGC------AATTATAGAATAAAACACGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TTAT---ATTATTTTT-TCTATGTTGACCGCT--------------------AA----------------AAT----------------A--TA---CTGA--T----------------GCAA--AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGtatg
gi|20 : gttaagtttcatagtaccattttataaatc-------TGCCGATTTGAAA--TCTCAGATTCAGCAAATCCATCACATGta
gi|3 : taAAGTCGTATCATAATTCATTCAAGCTCTCTTCTAATAAGTATTCAAGAAGGATGCTAGGAGAAATCTAGTTCAGAAGACT-A--T----TA----TA--TACAAGAGTGTCGTCTGATGAGCTCCAAGCTCACTGGTGAATGC-----AAAT-ATAGAATAAAACATGAGT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-TC--ATTGCTGTT-TCTACATTGACTTCA--------------------AA----------------AATATACTGAAGCAATAATC--TA---CCGA--T-------T-TT--TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TTCTGATTT-AAA--TCTCAGTTTCAGCAAATCTATCACATG
gi|4 : aatcAAGTCATATAATGATTCA-TTAAG--------------GTATCAAAATACGATGCTAGGGAAAATCTAGAGCAGAAGACT-A--T----TA----TA------ATAGTGTCTTCTGATGAGCTGCAAGCTCAACAGAGAATGCCACTGACATTACAGAATTAAACTTAAAT-----AGAAA-TAG----G--TTAT-----TTA-T-TC-T---ATTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------A--TA---CTGAGTT-------T-TTT-TTATC----AAATCTACTTAT-TT-T-TT-TATCAAATC-AACTGTTTTTTAATCCTTATTCTACTGATCTGACA--TCCCAGATTAAGCAAATCCATCAt
gi|5 : AAGTCATATCATGATTCAGTTAAGCTCCCTGCTAAAAAATATCCAAGTAGGATGCTAGGAGAAATCTAGATCAGAAGACT---------TG----TG--TACTAGAGTGCCTTCTGATGAGCTGCAAGCTCAACAGTGAATGCCACTGAAATTATAGAATAAAACATTAAT-----AGAAA-TAG----G--TTATTTTAGTTA-T-TT-T---ACTGTCGTT-TCTACATTGACTGCA--------------------AA----------------AAT----------------C--TA---CTGA--T-------T-TTG-TTATC----AAATCTACT--GATT-T-TT-AATC---CC-A----------AATC-------TACTGATTTGAGA--TCTCAGATTAAGCAAATCCATCAAATGtcac
gi|6 : aAAATAGGATGCTAGGAGAAATCTAGATCAGAAGCTT-A--T----TA----TA--TTCTAGAGTGTTGTCTGATGAGCTCCAAACTCACCAGTGAATGC------AGTTGTAGAATAAAACATGAGT-----AGAAT-TAG----G--TTATTTTATTTA-T-TT-TTTAATTGTTGTT-TTTACATTGACCGCA--------------------AAAATAAACTGACGCAAAAAT----------------C--TA---CTGA--T-------T-TTT-TTATC----AAATCTACT--GATT-T-TT-AATC---TC-A----------AATC-------TACTTATTTGAAA--TCTCAGATTCAGTAAATCCATCACATG
gi|7 : AGTCATATCATCATTCAATTGAACTCCCTGCCAAGAAACATCAAAATAGGATGCTATAAGAAATCCAGAACAGAAGACT-ATTT----TATT--TA--TAATAGAGT-TC--CTGCTGAGCTGTGAGCTCAACAGTGACTGTCACTGAAATTACAGAAAAAAATGTGAGT-----ATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTAC-T----------------------------------------------AAT----------------T-------------T-------T-TTT-TTATA----AAATCTACT--GTTT-T-TT-AATC---CT-A----------AATC-------TACTGta
gi|8 : tgtttagtttcagagtatcattttctaaatcAGTCATATCATGATTCAATTGAGCTCACTGCCAAAAAACATCAAAATAGGATGCTATAAAAAATCCAGAACCGAAGACT-A--T----TATATTTA--TAATAGAGTG---CCTGCTGAGCTGCAAGCTCAACAGTGACTGTCACTGAAATTACAGAA-AAAATGTGAGT-----ATAAA-TAG---------ATATAGGTTA-T-T-------------TT-TCTA----------------------------------------------------------------------------CTAA--T-------T-TTT-TTTTA----AAATCTACT--G-TT-T-TT-AATC---CT-A----------AATC-------TACTG
gi|9 : ttgtttagtttcggagtatcattttcttaatcATTCAGTTAAACTCCCTGCTAAGAAGTATCCAAACAGGATGCCAGGAGAAATCTAGACCAGAAGTTT-A--G----TA----CA--TAATCGAGTGCCTTCTGATGAGCTGCAACCTCA
gi|9 : -TT-T---CTTGTAGTT-TCTACATTGACAACA--------------------AA----------------ACT----------------C--TT---CTAA--T-------T-TTT---ATT----AAATATACT--G-TT-CATT-AATC---CT-A----------AATC-------TACTAATCTAAAA--TCCCAGATTCAGCAAATCCACCACAttgttaaactacatgtttcttgtagtttctacattgacaacaaaactcttctaatttttattaaatatactgttcattaatcctaaatctactaatctaaaatcccagattcagcaaatccaccaca