lowQualScore : 1 1
lowQualScore : 6 6 3 5 5 6 6 5 6 8 6 0 4 5 6 5555 4
lowQualScore : . . . . . . . . . . . . . . . .... .
lowQualScore : 0 0 5 6 0 0 0 4 0 0 0 8 0 4 0 7777 5
consensus : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Reference ( gi|3 ) : TAGTCTGGCATCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACCACAAAGACGTCCCGATTTTGGTGCATGATTAATGGAGTCATAACTGCTTTTAAACTTCTTAATCAACCTCGTGACGGTGGCATACGACACTTCATTCCGTCCATGAACAACACACAATTCGTCA-AAAACCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTCCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCT
gi|1 : TAGTCTGACGTCAGACTTAACCACATCACATACTTTGTTTACCATAATGTTAGAAGAAGCACTACAA
gi|6 : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcaataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaatttttacgaaaatcctgtgcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctt
gi|18 : TAATCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcgataatactgcgtgtacaccggtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccgtgcaaggcgatgctgcacgataattagttgcattacttttgaaatgccc
gi|2 : AGTCTGGCGTCAAACTTAACCACATCACATACTTTGTTAACCATATTGTTAGCAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCTAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTACGTGTACACCTGTGAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCT
gi|8 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTT-GGTGCATCATTATTGGAGTCACAACCGCTCTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCAGGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTACCGATCATACTGTGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATCTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCTc
gi|5 : AGTCTAGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATAAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTTTTAAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGTGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATCATGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGATAATGGATGTCTCGCTACATCGGTACACTTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCC
gi|7 : AGTCTGGCGTCAGACTTAACCACATCACATATTATGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTGAGTGTATCATTAATGGAGTCACAACCGCTTTTAAACTTCCTAATCCACCTCGTGGCG-TGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTAA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTTTTGCCAACAATTTTGCTATAGTGTCAATGACAATAGGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGCATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATTTTCAAGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGC---ACGGGATTTTCAAATGCCCCT
gi|9 : AGTCTGTCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATACTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATATACCTCGTGAAGGTGGCATACGACACTTCATTATGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGC-----------------------TCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTATCAATGGCTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTAAGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACG-AAATCCCGTGCAAGGTGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|4 : AGTCTGACGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTAAAA
gi|10 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtataagcgataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatctctagcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctc
gi|1 : CTTTTATCACTGTATTAGCAATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTTACGAAAATCCTGTGCAAGGCAAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttattactgtattagcgataattctgcgtgtacacctgtaaacttggtatgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccctgcaaggcgaggcctcacgataatcattt
gi|6 : tagtctgacgtcagacttaaccacatcacatactttgtttaccataatgttagaagaagcactacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCGGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATTAGTTGCATTAC----TTTTGAAATGCCt
gi|4 : tagtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTTATCACTGTATAAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCTCTAGCAAGGCAAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCTc
gi|10 : agtctgacgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTTATTACTGTATTAGCGATAATTCTGCGTGTACACCTGTAAACTTGGTATGTA------GAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCCTGCAAGGCGAGGCCTCACGATAATCATTTc
gi|11 : agtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|12 : TTTTATCACTGTATTAGCGATAATACTGCCTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGTTACATTGGTACAATTTTTACGAAAATCCCGTGCAAGGCGAGGCCGCATGATAATCAGTTGCATTAC----TTTTGAAATGTCC
gi|14 : TTTATCACTGTATTAGCAATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTa
gi|15 : TTTATCACTGTATTAGCGATAATACTGCGTGTACACCTTTAAATTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGCATTAC----TTTTGAAATGCCCCTc
gi|13 : TTTATCACTGTATTAGCGATAATACTGCTTGTAAACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTATAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATACGTTGCATTAC----TTTTGAAATGCCACT
gi|16 : TCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGTCGCATGATAATCAGTTGCATTAC----TTTTGAAATc
gi|17 : tgcCGATAATACTGCGTGTATACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATTCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Alignments
lowQualScore : 3 6 1 6666
lowQualScore : . . . ....
lowQualScore : 2 7 8 1111
consensus : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Reference ( family-3501 ) : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|1 : TAGTCTGACGTCAGACTTAACCACATCACATACTTTGTTTACCATAATGTTAGAAGAAGCACTACAA
gi|10 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcaataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaatttttacgaaaatcctgtgcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctt
gi|10 : CTTTTATTACTGTATTAGCGATAATTCTGCGTGTACACCTGTAAACTTGGTATGTA------GAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCCTGCAAGGCGAGGCCTCACGATAATCATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttattactgtattagcgataattctgcgtgtacacctgtaaacttggtatgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccctgcaaggcgaggcctcacgataatcattt
gi|11 : agtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|12 : TTTTATCACTGTATTAGCGATAATACTGCCTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGTTACATTGGTACAATTTTTACGAAAATCCCGTGCAAGGCGAGGCCGCATGATAATCAGTTGCATTAC----TTTTGAAATGTCCC
gi|13 : TTTATCACTGTATTAGCGATAATACTGCTTGTAAACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTATAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATACGTTGCATTAC----TTTTGAAATGCCACTa
gi|14 : TTTATCACTGTATTAGCAATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTc
gi|15 : TTTATCACTGTATTAGCGATAATACTGCGTGTACACCTTTAAATTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGCATTAC----TTTTGAAATGCCCCTc
gi|16 : TCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGTCGCATGATAATCAGTTGCATTAC----TTTTGAAAT
gi|17 : tgcCGATAATACTGCGTGTATACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATTCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|18 : TAATCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAc
gi|2 : AGTCTGGCGTCAAACTTAACCACATCACATACTTTGTTAACCATATTGTTAGCAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCTAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTACGTGTACACCTGTGAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCT
gi|3 : TAGTCTGGCATCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACCACAAAGACGTCCCGATTTTGGTGCATGATTAATGGAGTCATAACTGCTTTTAAACTTCTTAATCAACCTCGTGACGGTGGCATACGACACTTCATTCCGTCCATGAACAACACACAATTCGTCA-AAAACCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTCCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTc
gi|4 : AGTCTGACGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTAAAA
gi|5 : AGTCTAGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATAAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTTTTAAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGTGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATCATGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGATAATGGATGTCTCGCTACATCGGTACACTTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtataagcgataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatctctagcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctc
gi|6 : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAA
gi|6 : CTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCGGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATTAGTTGCATTAC----TTTTGAAATGCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcgataatactgcgtgtacaccggtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccgtgcaaggcgatgctgcacgataattagttgcattacttttgaaatgccc
gi|7 : tagtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTGGCGTCAGACTTAACCACATCACATATTATGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTGAGTGTATCATTAATGGAGTCACAACCGCTTTTAAACTTCCTAATCCACCTCGTGGCG-TGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTAA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTTTTGCCAACAATTTTGCTATAGTGTCAATGACAATAGGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGCATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATTTTCAAGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGC---ACGGGATTTTCAAATGCCCCT
gi|8 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTT-GGTGCATCATTATTGGAGTCACAACCGCTCTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCAGGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTACCGATCATACTGTGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATCTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|9 : AGTCTGTCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATACTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATATACCTCGTGAAGGTGGCATACGACACTTCATTATGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCT-----------------------CGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTATCAATGGCTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTAAGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACG-AAATCCCGTGCAAGGTGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Alignments
lowQualScore : 3 6 1 6666
lowQualScore : . . . ....
lowQualScore : 2 7 8 1111
consensus : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Reference ( family-3501 ) : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|1 : TAGTCTGACGTCAGACTTAACCACATCACATACTTTGTTTACCATAATGTTAGAAGAAGCACTACAA
gi|10 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcaataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaatttttacgaaaatcctgtgcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctt
gi|10 : CTTTTATTACTGTATTAGCGATAATTCTGCGTGTACACCTGTAAACTTGGTATGTA------GAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCCTGCAAGGCGAGGCCTCACGATAATCATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttattactgtattagcgataattctgcgtgtacacctgtaaacttggtatgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccctgcaaggcgaggcctcacgataatcattt
gi|11 : agtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|12 : TTTTATCACTGTATTAGCGATAATACTGCCTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGTTACATTGGTACAATTTTTACGAAAATCCCGTGCAAGGCGAGGCCGCATGATAATCAGTTGCATTAC----TTTTGAAATGTCCC
gi|13 : TTTATCACTGTATTAGCGATAATACTGCTTGTAAACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTATAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATACGTTGCATTAC----TTTTGAAATGCCACTa
gi|14 : TTTATCACTGTATTAGCAATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTc
gi|15 : TTTATCACTGTATTAGCGATAATACTGCGTGTACACCTTTAAATTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGCATTAC----TTTTGAAATGCCCCTc
gi|16 : TCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGTCGCATGATAATCAGTTGCATTAC----TTTTGAAAT
gi|17 : tgcCGATAATACTGCGTGTATACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATTCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|18 : TAATCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAc
gi|2 : AGTCTGGCGTCAAACTTAACCACATCACATACTTTGTTAACCATATTGTTAGCAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCTAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTACGTGTACACCTGTGAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCT
gi|3 : TAGTCTGGCATCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACCACAAAGACGTCCCGATTTTGGTGCATGATTAATGGAGTCATAACTGCTTTTAAACTTCTTAATCAACCTCGTGACGGTGGCATACGACACTTCATTCCGTCCATGAACAACACACAATTCGTCA-AAAACCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTCCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTc
gi|4 : AGTCTGACGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTAAAA
gi|5 : AGTCTAGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATAAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTTTTAAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGTGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATCATGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGATAATGGATGTCTCGCTACATCGGTACACTTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtataagcgataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatctctagcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctc
gi|6 : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAA
gi|6 : CTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCGGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATTAGTTGCATTAC----TTTTGAAATGCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcgataatactgcgtgtacaccggtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccgtgcaaggcgatgctgcacgataattagttgcattacttttgaaatgccc
gi|7 : tagtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTGGCGTCAGACTTAACCACATCACATATTATGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTGAGTGTATCATTAATGGAGTCACAACCGCTTTTAAACTTCCTAATCCACCTCGTGGCG-TGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTAA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTTTTGCCAACAATTTTGCTATAGTGTCAATGACAATAGGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGCATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATTTTCAAGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGC---ACGGGATTTTCAAATGCCCCT
gi|8 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTT-GGTGCATCATTATTGGAGTCACAACCGCTCTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCAGGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTACCGATCATACTGTGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATCTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|9 : AGTCTGTCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATACTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATATACCTCGTGAAGGTGGCATACGACACTTCATTATGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCT-----------------------CGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTATCAATGGCTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTAAGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACG-AAATCCCGTGCAAGGTGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
blockSeqs : T T A GGGA
blockSeqs : T . T .
blockSeqs : G . A .
blockSeqs : T . G .
blockSeqs : . . . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons :
originalCons : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
finalCons : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Alignments
lowQualScore : 3 6 1 6666
lowQualScore : . . . ....
lowQualScore : 2 7 8 1111
consensus : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
Reference ( family-3501 ) : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|1 : TAGTCTGACGTCAGACTTAACCACATCACATACTTTGTTTACCATAATGTTAGAAGAAGCACTACAA
gi|10 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcaataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaatttttacgaaaatcctgtgcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctt
gi|10 : CTTTTATTACTGTATTAGCGATAATTCTGCGTGTACACCTGTAAACTTGGTATGTA------GAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCCTGCAAGGCGAGGCCTCACGATAATCATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttattactgtattagcgataattctgcgtgtacacctgtaaacttggtatgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccctgcaaggcgaggcctcacgataatcattt
gi|11 : agtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|12 : TTTTATCACTGTATTAGCGATAATACTGCCTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGTTACATTGGTACAATTTTTACGAAAATCCCGTGCAAGGCGAGGCCGCATGATAATCAGTTGCATTAC----TTTTGAAATGTCCC
gi|13 : TTTATCACTGTATTAGCGATAATACTGCTTGTAAACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTATAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATACGTTGCATTAC----TTTTGAAATGCCACTa
gi|14 : TTTATCACTGTATTAGCAATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTc
gi|15 : TTTATCACTGTATTAGCGATAATACTGCGTGTACACCTTTAAATTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGCATTAC----TTTTGAAATGCCCCTc
gi|16 : TCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTTGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGAGGTCGCATGATAATCAGTTGCATTAC----TTTTGAAAT
gi|17 : tgcCGATAATACTGCGTGTATACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATTCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|18 : TAATCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAc
gi|2 : AGTCTGGCGTCAAACTTAACCACATCACATACTTTGTTAACCATATTGTTAGCAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCTAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTACGTGTACACCTGTGAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCT
gi|3 : TAGTCTGGCATCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACCACAAAGACGTCCCGATTTTGGTGCATGATTAATGGAGTCATAACTGCTTTTAAACTTCTTAATCAACCTCGTGACGGTGGCATACGACACTTCATTCCGTCCATGAACAACACACAATTCGTCA-AAAACCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTCCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCTCTc
gi|4 : AGTCTGACGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTAAAA
gi|5 : AGTCTAGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATAAATGGAGTCACAACCGCTTTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTTTTAAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGTGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATCATGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGTATGTGTAGATAATGGATGTCTCGCTACATCGGTACACTTTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtataagcgataatactgcgtgtacacctgtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatctctagcaaggcaaggccgcacgataatcagttgcattacttttgaaatgcccctc
gi|6 : TAGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAA
gi|6 : CTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCGGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACGAAAATCCCGTGCAAGGCGATGCTGCACGATAATTAGTTGCATTAC----TTTTGAAATGCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttatcactgtattagcgataatactgcgtgtacaccggtaaacttggtatgtatgtgtagagaatggatgtctcgctacatcggtacaattttcacgaaaatcccgtgcaaggcgatgctgcacgataattagttgcattacttttgaaatgccc
gi|7 : tagtctggcgtcagacttaaccacatcacatactttgttaaccataatgttagaagtagcactacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTGGCGTCAGACTTAACCACATCACATATTATGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTTGAGTGTATCATTAATGGAGTCACAACCGCTTTTAAACTTCCTAATCCACCTCGTGGCG-TGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTAA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCGAGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTTTTGCCAACAATTTTGCTATAGTGTCAATGACAATAGGTTGCTTTTATCACTGTATTAGCGATAATACTGCGTGTACACCTGTAAACTTGGTATGCATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATTTTCAAGAAAATCCCGTGCAAGGCGAGGCCGCACGACAATCAGTTGC---ACGGGATTTTCAAATGCCCCT
gi|8 : AGTCTGGCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATGTTAGAAGTAGCACTACAAGGACGTCCCGATTT-GGTGCATCATTATTGGAGTCACAACCGCTCTTAAACTTCTTAATCCACCTCGTGACGGTGGCATACGACACTTCATTCTGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCTGGCATCAGGTCTTTACATAACCTCGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTGTCAATGACTATATGTTGCTTTTATCACTGTATTACCGATCATACTGTGTGTACACCTGTAAACTTGGTATGTATGTGTAGAGAATGGATGTCTCGCTTCATCGGTACAATCTTCACGAAAATCCCGTGCAAGGCGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT
gi|9 : AGTCTGTCGTCAGACTTAACCACATCACATACTTTGTTAACCATAATACTAGAAGTAGCACTACAAGGACGTCCCGATTTTGGTGCATCATTAATGGAGTCACAACCGCTTTTAAACTTCTTAATATACCTCGTGAAGGTGGCATACGACACTTCATTATGTCCATGAACAACACACAATTCGTCA-AAAATCTCCTTCGCTGATACGCCAAGCT-----------------------CGAATTTCAGCTGCCTTTACACTTCTCTTGCCAACCATTTTACTATAGTATCAATGGCTATATGTTGCTTTTATCACTGTATTAGCGATAATACTGCATGTACACCTGTAAACTTGGTATGTAAGTGTAGAGAATGGATGTCTCGCTACATCGGTACAATTTTCACG-AAATCCCGTGCAAGGTGAGGCCGCACGATAATCAGTTGCATTAC----TTTTGAAATGCCCCT