lowQualScore                  :                                                    444             
lowQualScore                  :                                                    ...             
lowQualScore                  :                                                    777             
consensus                     :  CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
Reference ( gi|4 )            :  CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|5                          :  CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|6                          :  CGAGGAGCATTTCAAAAGTAATGCAATTGGGGTAATATAAAGCGCGCGTT---TAATAGATATTA
gi|3                          :  CGAGGGGCATTTCAAAAGTAATGCAACTAGTGAAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|2                          :  CAAGGGGCATTTCAAAAGTAATGCAACTGGAGTAATATAAAGCGCACGTT---TGATTGATATTAA
gi|1                          :  CGAGGGGCATTTCAAAAGTAATGCAACTGGGGT-ATATAAATCGCGCGTTTGATGATAGATATTAA
gi|13                         :  CGAGGGGCATTTCAAAAGTAATGCAACTGGAGT--TATCAAACGCACGTT---TGATAGATATTAAa
gi|17                         :  CGAAGGGCATTTCAAAAGTAATGCAACTG
gi|10                         : taGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|8                          :   GAGGGACATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|11                         :   GAGGGGCATTTCAAAAGTAATGCAAATGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|12                         :   GAGGGGCATTTCAAAATGAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|7                          :   GAGGGGCATTTCATAAGCAATGCAACTGGGGCAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|16                         :   GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TAATAG
gi|9                          :    AGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGAGTGCATT---TGATAGATATTAA
gi|14                         :    aGGTGCATTTTAAAAGTGATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|15                         :      GGGCATTTCAAAAATAAAACAACTGGGGTAATATAAAGCGCACGTT---TGATAGATATT

lowQualScore                  :                                                     444             
lowQualScore                  :                                                     ...             
lowQualScore                  :                                                     444             
consensus                     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
Reference ( family-3500 )     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|1                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGT-ATATAAATCGCGCGTTTGATGATAGATATTAA
gi|10                         :    GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAAa
gi|11                         :    GAGGGGCATTTCAAAAGTAATGCAAATGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|12                         :    GAGGGGCATTTCAAAATGAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|13                         :   CGAGGGGCATTTCAAAAGTAATGCAACTGGAGT--TATCAAACGCACGTT---TGATAGATATTAA
gi|14                         :      GGTGCATTTTAAAAGTGATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|15                         :       GGGCATTTCAAAAATAAAACAACTGGGGTAATATAAAGCGCACGTT---TGATAGATATT
gi|16                         :    GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TAATAGta
gi|17                         :   CGAAGGGCATTTCAAAAGTAATGCAACTG
gi|2                          : taCAAGGGGCATTTCAAAAGTAATGCAACTGGAGTAATATAAAGCGCACGTT---TGATTGATATTAA
gi|3                          :   CGAGGGGCATTTCAAAAGTAATGCAACTAGTGAAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|4                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|5                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|6                          :   CGAGGAGCATTTCAAAAGTAATGCAATTGGGGTAATATAAAGCGCGCGTT---TAATAGATATTA
gi|7                          :    GAGGGGCATTTCATAAGCAATGCAACTGGGGCAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|8                          :    GAGGGACATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|9                          :     AGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGAGTGCATT---TGATAGATATTAA

lowQualScore                  :                                                     444             
lowQualScore                  :                                                     ...             
lowQualScore                  :                                                     444             
consensus                     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
Reference ( family-3500 )     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|1                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGT-ATATAAATCGCGCGTTTGATGATAGATATTAA
gi|10                         :    GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAAa
gi|11                         :    GAGGGGCATTTCAAAAGTAATGCAAATGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|12                         :    GAGGGGCATTTCAAAATGAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|13                         :   CGAGGGGCATTTCAAAAGTAATGCAACTGGAGT--TATCAAACGCACGTT---TGATAGATATTAA
gi|14                         :      GGTGCATTTTAAAAGTGATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|15                         :       GGGCATTTCAAAAATAAAACAACTGGGGTAATATAAAGCGCACGTT---TGATAGATATT
gi|16                         :    GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TAATAGta
gi|17                         :   CGAAGGGCATTTCAAAAGTAATGCAACTG
gi|2                          : taCAAGGGGCATTTCAAAAGTAATGCAACTGGAGTAATATAAAGCGCACGTT---TGATTGATATTAA
gi|3                          :   CGAGGGGCATTTCAAAAGTAATGCAACTAGTGAAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|4                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|5                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|6                          :   CGAGGAGCATTTCAAAAGTAATGCAATTGGGGTAATATAAAGCGCGCGTT---TAATAGATATTA
gi|7                          :    GAGGGGCATTTCATAAGCAATGCAACTGGGGCAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|8                          :    GAGGGACATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|9                          :     AGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGAGTGCATT---TGATAGATATTAA


blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  
blockSeqs                     :                                                     .  


blockSeqCons                  :                                                     ***
originalCons                  :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
finalCons                     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA

lowQualScore                  :                                                     444             
lowQualScore                  :                                                     ...             
lowQualScore                  :                                                     444             
consensus                     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
Reference ( family-3500 )     :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|1                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGT-ATATAAATCGCGCGTTTGATGATAGATATTAA
gi|10                         :    GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAAa
gi|11                         :    GAGGGGCATTTCAAAAGTAATGCAAATGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|12                         :    GAGGGGCATTTCAAAATGAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|13                         :   CGAGGGGCATTTCAAAAGTAATGCAACTGGAGT--TATCAAACGCACGTT---TGATAGATATTAA
gi|14                         :      GGTGCATTTTAAAAGTGATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|15                         :       GGGCATTTCAAAAATAAAACAACTGGGGTAATATAAAGCGCACGTT---TGATAGATATT
gi|16                         :    GAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TAATAGta
gi|17                         :   CGAAGGGCATTTCAAAAGTAATGCAACTG
gi|2                          : taCAAGGGGCATTTCAAAAGTAATGCAACTGGAGTAATATAAAGCGCACGTT---TGATTGATATTAA
gi|3                          :   CGAGGGGCATTTCAAAAGTAATGCAACTAGTGAAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|4                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|5                          :   CGAGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGGTAGATATTAA
gi|6                          :   CGAGGAGCATTTCAAAAGTAATGCAATTGGGGTAATATAAAGCGCGCGTT---TAATAGATATTA
gi|7                          :    GAGGGGCATTTCATAAGCAATGCAACTGGGGCAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|8                          :    GAGGGACATTTCAAAAGTAATGCAACTGGGGTAATATAAAGCGCGCGTT---TGATAGATATTAA
gi|9                          :     AGGGGCATTTCAAAAGTAATGCAACTGGGGTAATATAAAGAGTGCATT---TGATAGATATTAA