lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 6666666666 888888 1 1 333 11 4444444444444444444444 1 3333 1 22 11 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1111 1111111 1 999999999999999999999999999999999999 44444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 222 11111 2222222 2222 4444444
lowQualScore : 2222222222 333333 3 5 777 3 333 88 9999999999999999999999 6 5 4 1111 5 33 00 5 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 1 8 1111 1 1 9999999 99 8 0 5 999999999999999999999999999999999999 1 77777777 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 00 333 22 3 0 9 22222 3333333 0 1111 4444444
lowQualScore : .......... ...... . . ... . ... .. ...................... . . . .... . .. .. . . ......................................................................................... . . . . . .... . . ....... .. . . . .................................... . ........ .............................................................................................. . .. ... .. . . . ..... ....... . .... .......
lowQualScore : 5555555555 555555 0 5 555 3 000 33 3333333333333333333333 0 0 0 0000 0 00 00 5 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 0 2 8 0 0000 0 5 0000000 22 3 7 2 000000000000000000000000000000000000 0 77777777 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 77 666 22 0 8 6 55555 4444444 2 2222 3333333
consensus : NAAATANTGCCAAAAACCAGAAATGTGTCAATAC-GACNTGGATGTCCCNACTAT-TGATTGCAAATCAAT--TTT---CCGAAAA-N--GG-CCAT-ACTCCTGTAAAATTTGACCGACGTNGACANNTATCAAACTTGACCNGTATTTCANAATTACACAACTACANGCNAAA--TATCTANTATAACACANTAGACCCTTCCAGAAGNTAT-GAT---CAGAAA--AA-C--ATT-----GACGGACGGACGTTC-TAACGA--ATGGGTATTTA---A---GTGGCT--TCTTTGCGCCCAGCCG---ATTA-CT---TGTGTGGCT--AT--------ATTTTAGCCACACAACAG-ANAT-TTAGCCACATAAA------AG---------CATTGTT--TTT---------------A--------------GCCACGTAAT--------NACT-TTT---------TTCAACCGTCCATAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTCG--TGC--GGAC----GGACAGACA--TGACAGACGG
Reference ( gi|1 ) : AAAATA-TGC--AGA-CTAGAAATGTGTC--TGCTGACATGAATGTCTTAACTAT-TGATTGGAAATCAAT--TTTTCACCGAAAA-G--GG-CCATAACTCTTGTAAAAGTTGACCGACATTGACGAAAATGAAACTTATCTTGTATTTTATAATAAAACATGTACAAG-AAAACTTTTTTACTA-AATACAA-AGAACCCATCAGAAGTAACAGAT---CAGAAA--AA-CACATT--CCTG-CAGACGGACATAC-TAACAA--AGGGGTATTTA---A---GTGGCT--TCTATGCGCACAGCGGA--ATT--TT---TGTGTGGCT--AT--------ATTTTAGCCACACAACAG-ATGTATTAGCCACATAAA------AG---------CATTATT--TTT---------------A--------------GCC---CAAT--------AACT-TTT---------TTCAACCGTCCAAAAAAATAAATAACCTTAAACCCCAGACACTTAAATAC-----CCATTTG--TGC--GGAC----GGACAAACTGATGACAGACAGGAG
gi|9 : AAATACTGTCAAAA-CTAGAAATGTGTCAATAC-AACCTGGATA-CCCAACTATAAGAT----AGTAAAT--TTT--ACCGAAAACA--GG-CTTTAACTCCTGTAAAGTTTGACC
gi|14 : AAATAATAC--AAAACCAGAAATGTGTC------GACATGAATGTCCTCACTAT-TGAa
gi|2 : AT-TGATTGCAAAACAATAATTTTGTCCAAAAA-CTTAG-TCA--ACTTCTGTAATATATGACCAATGTAGACATTTATCAAACTTGACCAGTATTTCAAAATTATACAACTACATGCAAAA--TATCTATTA-AACACAATAGACCCTTCCAGAAGATATTGAC---CAGAAACCAA-C---TTGACC------ACG-ACGTTC-TAACAA--ATGGGTGTTTA---A---GTGGCT--TATTTGCAACCAGCTG---ATTAACT---TGTGTGGTT--AA--------ATTTTAGTCATACAACAG-AT-T-TTGGCCACATAAAGTGTATAGAAACAGTCACATGATTAATTT------------------------------------CAAC--------CA---TTT---------TCCAACTGTCT-GAGAAATTACTAACCCAAAATCCTGCATACTTAAATAC-----CCATT
gi|4 : AAATCAAT--GTT-----GAAAA-G--GGACCAT--CTCCTGTAAAATTTGACCGACATTGACAAATATCAAACTTGACCTGTA-TTTATAATTACAC-----CAAA-TAA-------TAATATAATACAT-AGACTCTTTCAGAAGTTAT---T---CAGCAG--AATCTCATT----TGACAGACGTACGCACGCGGCAGACAGGGGTActgagtgtgaaaacagaaggatggggagaaca
gi|6 : taaaaatatgtccataggacatggatgcccctgctatatgttagtagtagatcttaccaaCAGATAGACTGAAA--GA-CAGATT-----GACAGATAGATATTC-TAACAA--ACGGATCTATA---ATATGTGGCTACTTTATATGCCAAGC------TT--ATACATGTATTACT---T--------A-TTTAGCCACAAAATAG-AGAT-TTAGCTGCATGAacacttaatgacccttcacaacttt
gi|3 : -CGGACGGACTTTC-TCACGA--ATGGGTATTTA---A---GTGGCT--TCTTTGCGT-CAATCTT--ATTA-CT---TGTGTGGCTAAATTTTAGATAATTTTAGCCACGTAAGAGAAAAAAAAAGCCACTTAAA------TG---------C--TGTT--TTTTAAGTGACTAAAAACA--------------GCCACGTAAT--------TATT-TTTCAACTGCTTTTCAACTGTCCATAAAAATTGCTAACCCTAAACCCTAGACACTTAGACACCTAGACCATTTGTTTGCCTGGAC----GGAC-------TGACAGACGG
gi|13 : gaCAGATGTTC-TAACAA--ATGG---TTTATTCA---GTGGCT--TCTTTGGACCCAGCacggatggatgctgccattactatatgcccccccaaaatttttggggggcataataaattaaccgtttaatttcatacataaacagaaaataacaaatcaatcaacatcaactattgatg
gi|5 : ACGA--ATGAGTATTTA---A---GTGGCT--TCTTTGCACCGAGC-----------T---TAT-TAACT--GT--------GT---GGCCACACAAAAG-AAAAAA-AGCCACATAAA------AG---------C--TGTT--TTT---------------AAGAGTCTAGAAACAGCCACATAATTATTTTTCAACTGCTT---------TTCAACCGTCCATAAAAAT---TA---CTAAACCC-AGACACTTAACTAC-----CCATTCG--Ttggttagttt
gi|11 : gacggGGCT--TCTATGCACACAGCTGATTATT--TT---TGTAC--CT--A---------ATTTTAGCAACACAACAG-GTAT-TTAGCCAAATAAA------
gi|16 : TTTTGGTCACACAACAG-AT-T-TTAGCCACATAAA------AC---------CATT-TT--TTT---------------
gi|10 : AAGAATAAATTATTTTAA-CCCCAGACACTTAAACCT-----CCATTTG---G---GGACACATGGACAGACAGATGA
gi|8 : AATTAGTTACCCTCAACAGTAGACACTTGAGTAC-----CCATTTG--TGT--GTGC----GGACAGACACTTGACAAACAaggaagcggcaac
gi|2 : AGCCACTTAAACAC-----CCATTTG--TTA--GAAC----Gtacaacaggcagacaaaaggaaggtaaacctgaagtgc
gi|3 : attgattgcaaaacaataattttgtccaaaaacttagtcaacttctgtaatatatgaccaatgtagacatttatcaaacttgaccagtatttcaaaattatacaactacatgcaaaatatctattaaacacaatagacccttccagaagatattgaccagaaaccaacttgaccacgaAGCCACTTAAATAC-----CCATTCG--TGtatttgcaaccagctgattaacttgtgtggttaaattttagtcatacaacagattttggccacataaagtgtatagaaacagtcacatgattaatttcaaccattttccaactgtctgagaaattactaacccaaaatcctgcatacttaaatacccattctgagtgtgaaaacagaaggatggggagaaca
gi|5 : gacggacggactttctAGCCACTTAAATAC-----TCATTCG--TCC--Gtctttgcgtcaatcttattacttgtgtggctaaattttagataattttagccacgtaagagaaaaaaaaagccacttaaatgctgttttttaagtgactaaaaacagccacgtaattatttttcaactgcttttcaactgtccataaaaattgctaaccctaaaccctagacacttagacacctagaccatttgtttgcctggacggactgacagacggacggatggatgctgccattactatatgcccccccaaaatttttggggggcataataaattaaccgtttaatttcatacataaacagaaaataacaaatcaatcaacatcaactattgatg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GACAGATGGACGGGCAGACAGACGCTGCCATTACTATATGCCACATCAAACATTTGCGTAAACACTCCTTACCATATTTTACTGATAAATTGAGGTAATAAAAAATATTTAAAACTATTGCTG
Unaligned ( gi|12 ): TATAAATAATTATGTTATCAGGATATGGATGTCCCAGCTGTATGTTAGTAAGTATTATCAAAGGTTGAAGA
Unaligned ( gi|15 ): CTAAAACTGTGTCAATAGGACATAGATGCCCCTACAGTATTCTGG
Unaligned ( gi|17 ): GACGGACGGACGGACTTTCTAACGAATGGGTTGTTAAGTAG
Unaligned ( gi|18 ): TAGAAATGTGTCTATAGGACATGGATGCCCCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33 222222 11 333333333333 22222222 333333333333 33333333333333 1 222222222222 222222 2 22 2222 11 5555555555555 1111111 444444444444 22222222222 22 666666666666666666666666666666666666666666666666666666 111 11111 2222222 111 333333
lowQualScore : 4 00 7 2 000000 1 6 1 11 777777777777 33333333 2 666666666666 00000000000000 0 1 22 1 2 1 3 777777777777 000000 1 3 0 11 0 1 9999 33 4444444444444 6 1 1 3 1111111 77 0 88 5 1 444444444444 1 22222222222 5 00 444444444444444444444444444444444444444444444444444444 9 000 4 66666 1111111 222 444444
lowQualScore : . .. . . ...... . . . .. ............ ........ . ............ .............. . . .. . . . . ............ ...... . . . .. . . .... .. ............. . . . . ....... .. . .. . . ............ . ........... . .. ...................................................... . ... . ..... ....... ... ......
lowQualScore : 0 33 3 0 555555 0 7 0 00 888888888888 00000000 5 888888888888 88888888888888 7 0 00 0 0 0 7 000000000000 000000 0 7 7 33 7 0 3333 88 2222222222222 3 7 7 7 0000000 99 7 00 7 7 000000000000 4 66666666666 0 88 000000000000000000000000000000000000000000000000000000 8 000 2 77777 3333333 444 000000
consensus : NAAATA-TGC--AAAACTAGAAATGTGTC-ATAG-GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--TACA-GCAAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTA---A---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCT--AT--------ATTTTAGCCACACAACAGATAT-TT-----AGCCACATAAAAGCATTGTTT----TT-AGG---C-GAAA--AGCCACGTAATTATT--------TTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--GGACGGACGGAC--A--TGACAGACGG
Reference ( family-350 ) : NAAATANTGCCAAAAACCAGAAATGTGTCAATAC-GACNTGGATGTCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-N--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTNGACANNTATCAAACTTGACCNGTATTTCANAATTACACAACTACANGCNAAA--TATCTANTATAACACANTAGACCCTTCCAGAAGNTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTATTTA---A---GTGGCTTCTTTGC--GCCCAGCCGATT-ACTTGTGTGGCT--AT--------ATTTTAGCCACACAACAGANAT-TT-----AGCCACATAAAAGCATTGTTT----TT---------------AGCCACGTAATNACT--------T---------TTTTCAACCGTCCATAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--GGACGGACAGAC--A--TGACAGACGG
gi|1 : AAATA-TGC---AGACTAGAAATGTGTC--TGCTGACATGAATGTCTTAAC--TAT----------T-GAT--TGG---AAATCAAT----TT-TTCACCGAAAA-G--GG-CCAT-AACTCTTGTAAAAGTTGACCGACATTGACGAAAATGAAACTTATCTTGTATTTTATAATAAAACATGTACAAG-AAAACTTTTTTACTA-AATACAA-AGAACCCATCAGAAGTAA-CAGATCAGAAA--AA---CA--CATTCCTG-CAGACGGACATACTAACAAAGGGGTATTTA---A---GTGGCTTCTATGC--GCACAGCGGAAT-TTTTGTGTGGCT--AT--------ATTTTAGCCACACAACAGATGTATT-----AGCCACATAAAAGCATTATTT----TT---------------AGCC---CAATAACT--------T---------TTTTCAACCGTCCAAAAAAATAAATAACCTTAAACCCCAGACACTTAAATAC-----CCATTT---G--TGC--GGACGGACAAACTGA--TGACAGACAG
gi|10 : aAAATTATT-----TTAACCCCAGACACTTAAACCT-----CCATT-------TGG--GGACACATGGAC--A---GACAGATGgag
gi|11 : aagaatGGCTTCTATGC--ACACAGCTGATT-ATTTTTGTACCT--A---------ATTTTAGCAACACAACAGGTAT-TT-----AGCCAAATAAAaaggaagcggcaac
gi|13 : CAGATGTTCTAACAAATGG---TTTATTCA---GTGGCTTCTTTGG--ACCCAGCTGGTT-AGTT
gi|14 : AAATAATAC--AAAACCAGAAATGTGTC------GACATGAATGTCCTCAC--TAT----------T-GAt
gi|15 : CTAAAACTGTGTCAATAG-GACATAGATGCCCCTACAGTAT----------T-
gi|16 : TTTTGGTCACACAACAGAT-T-TT-----AGCCACATAAAACCATTTTTT----Tctgg
gi|17 : GACGGACGGACTTTCTAACGAATGGGTTGTTA---A---GTAG
gi|18 : gacgAGAAATGTGTCTATAG-GACATGGATGCCCC
gi|2 : tAT----------T-GAT--TGC---AAAACAATAATTTTGT---CCAAAAA-CTTAG-TCA--A-CTTCTGTAATATATGACCAATGTAGACATTTATCAAACTTGACCAGTATTTCAAAATTATACAACTACATGCAAAA--TATCTATTA-AACACAATAGACCCTTCCAGAAGATATT-GACCAGAAACCAA---C---T-----TGAC-CAC-GACGTTCTAACAAATGGGTGTTTA---A---GTGGCTTATTTGC--AACCAGCTGATTAACTTGTGTGGTT--AA--------ATTTTAGTCATACAACAGAT-T-TT-----GGCCACATAAAG----TGTATAGAAAC---------------AGTCACATGATTAATTTCAACCAT---------TTTCCAACTGTCTG-AGAAATTACTAACCCAAAATCCTGCATACTTAAATAC-----CCATTCTGAG--TGT--GAA--AACAGAtg
gi|3 : GACGGACGGACTTTCTCACGAATGGGTATTTA---A---GTGGCTTCTTTGC--GTCAATCTTATT-ACTTGTGTGGCTAAATTTTAGATAATTTTAGCCACGTAAGAGAAA----AAAAAAGCCACTTAAATGC--TGTTT----TTTAAGTGACTAAAAACAGCCACGTAATTATT--------TTTCAACTGCTTTTCAACTGTCCATAAAAATTGCTAACCCTAAACCCTAGACACTTAGACACCTAGACCATTT---GTTTGCCTGGACGGACTGAC--A---GACGGACGGaggatggggagaaca
gi|4 : AAAAATATGTCCATAG-GACATGGATGCCCCTGC--TATATGTTAGTAGTAGATCTTACCAAAAATCAAT----GT-T-----GAAAA-G--GGACCAT---CTCCTGTAAAATTTGACCGACATTGACAAATATCAAACTTGACCTGTATTT-ATAATTACA----------CCAAA--TA-ATAATATAATACA-TAGACTCTTTCAGAAGTTA-T---TCAGCAG--AATCTCAT-T-----TGACAGACGTACGatggatgctgccattactatatgcccccccaaaatttttggggggcataataaattaaccgtttaatttcatacataaacagaaaataacaaatcaatcaacatcaactattgatg
gi|5 : tACGAATGAGTATTTA---A---GTGGCTTCTTTGC--ACCGAGCTTATT-AACTGTGTGGC---------------------CACACAAAAGAAAA-AA-----AGCCACATAAAAGC--TGTTT----TTAAGAGTCTAGAAAC-AGCCACATAATTATT--------TTTCAACTGCTTTTCAACCGTCCATAAAAATTA------CTAAACCC-AGACACTTAACTAC-----CCATTC---G--Tcacgcggcagacaggggtaacacttaatgacccttcacaacttt
gi|6 : gacggGAAA--GA---CAGAT-----TGACAGATAGATATTCTAACAAACGGATCTATA---ATATGTGGCTACTTTATATGCCAAGCTTAT--ACATGTATTACT---T--------ATTT-AGCCACAAAATAGAGAT-TT-----AGCTGCATGA
gi|8 : cagatagactAATTAGTTACCCTCAACAGTAGACACTTGAGTAC-----CCATTT---G--TGT--GTGCGGACAGAC--ACTTGACAAAC
gi|9 : AAATACTGTCAAAA-CTAGAAATGTGTCAATAC-AACCTGGATA-CCCAAC--TATA---------A-GAT--AGT---AAAT---T----TT-A---CCGAAAACA--GG-CTTTAA-CTCCTGTAAAGTTTGACCatacaacaggcagacaaaaggaaggtaaacctgaagtgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAGATGGACGGGCAGACAGACGCTGCCATTACTATATGCCACATCAAACATTTGCGTAAACACTCCTTACCATATTTTACTGATAAATTGAGGTAATAAAAAATATTTAAAACTATTGCTG
Unaligned ( gi|12 ): TATAAATAATTATGTTATCAGGATATGGATGTCCCAGCTGTATGTTAGTAAGTATTATCAAAGGTTGAAGA
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 2 1 33333333 11 333333333333 22222222 333333333333 33333333333333 1 666666666666 11 1 2222 11 5555555555555 111 3333333333333 222222222 22222 00000000000000000000 1111 11 111 11111 2222222 111111 333333
lowQualScore : 6 3 7 99999999 3 1 11 777777777777 33333333 2 666666666666 00000000000000 0 0 2 1 333333333333 88 88 1 3 7 7 9999 33 4444444444444 6 1 1 1 000 77 0 0 5 1 8888888888888 1 777777777 11111 66666666666666666666 3 4 3333 6 11 000 4 66666 1111111 333333 1 444444
lowQualScore : . . . ........ . . .. ............ ........ . ............ .............. . . . . ............ .. .. . . . . .... .. ............. . . . . ... .. . . . . ............. . ......... ..... .................... . . .... . .. ... . ..... ....... ...... . ......
lowQualScore : 7 3 3 77777777 7 0 00 888888888888 00000000 5 888888888888 00000000000000 7 7 0 0 000000000000 33 33 0 3 3 3 3333 88 2222222222222 3 7 7 0 000 99 7 7 7 7 0000000000000 4 111111111 88888 22222222222222222222 2 2 0000 5 88 000 2 77777 3333333 444444 4 000000
consensus : NAAATA-TG-CAAAACTAGAAATGTGTC-A-TAG--GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATA-----T-TTAGCCACATAAAAGCATTGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
Reference ( family-350 ) : NAAATA-TG-CAAAACTAGAAATGTGTC-A-TAG--GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-GCAAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATA-----T-TTAGCCACATAAAAGCATTGTTTTT-AGG---C--GA-----AA-AGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
gi|1 : AAATA-TG-CAGA-CTAGAAATGTGTC---T-GCTGACATGAATGTCTTAAC--TAT----------T-GAT--TGG---AAATCAAT----TT-TTCACCGAAAA-G--GG-CCAT-AACTCTTGTAAAAGTTGACCGACATTGACGAAAATGAAACTTATCTTGTATTTTATAATAAAACA--TGTACA-AGAAAACTTTTTTACTA-AATACAA-AGAACCCATCAGAAGTAA-CAGATCAGAAA--AA---CA--CATTCCTG-CAGACGGACATACTAACAAAGGGGTATTTAA---GTGGCTTCTATGC--GCACAGCGGAAT-TTTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATG-----TATTAGCCACATAAAAGCATTATTTTT--------------------AGCC---CAAT--------AACT-TTTTTCAACCGTCCAAAAAAATAAATAACCTTAAACCCCAGACACTTAAATAC-----CCATTT---G--TGC--G--GACGGACAAACTGA--TGACAGACAG
gi|10 : aAAATTATT-----TTAACCCCAGACACTTAAACCT-----CCATT-------TGG--G--GACACATGGAC--A---GACAGATGgag
gi|11 : aagaatGGCTTCTATGC--ACACAGCTGATT-ATTTTTGTACCTA----------A-TTTTAGCAACACAACAGGTA-----T-TTAGCCAAATAAAaaggaagcggcaac
gi|13 : CAGATGTTCTAACAAATGGTTTATTCA---GTGGCTTCTTTGG--ACCCAGCTGGTT-AGTT
gi|14 : AAATAATA-CAAAACCAGAAATGTGTC--------GACATGAATGTCCTCAC--TAT----------T-GAt
gi|15 : CTAAAACTGTGTC-AATAG--GACATAGATGCCCCTACAGTAT----------T-
gi|16 : -TTTTGGTCACACAACAGAT------T-TTAGCCACATAAAACCATTTTTTTctgg
gi|17 : GACGGACGGACTTTCTAACGAATGGGTTGTTAA---GTAG
gi|18 : gacgTAGAAATGTGTCTA-TAG--GACATGGATGCCCC
gi|2 : AT----------T-GAT--TGC---AAAACAATAATTTTGT---CCAAAAA-CTTAG-TCA--A-CTTCTGTAATATATGACCAATGTAGACATTTATCAAACTTGACCAGTATTTCAAAATTATACAACT--ACATGCAAAA--TATCTATTA-AACACAATAGACCCTTCCAGAAGATATT-GACCAGAAACCAA---C---T-----TGAC-CAC-GACGTTCTAACAAATGGGTGTTTAA---GTGGCTTATTTGC--AACCAGCTGATTAACTTGTGTGGTTA---------AA-TTTTAGTCATACAACAGAT------T-TTGGCCACATAAA------GTGTAT-AG-------AA-----AC-AGTCACATGATTA-ATTTCAACCATTTTCCAACTGTCTG-AGAAATTACTAACCCAAAATCCTGCATACTTAAATAC-----CCATTCTGAG--TGT--GAAAACAGAAGGAtg
gi|3 : GACGGACGGACTTTCTCACGAATGGGTATTTAA---GTGGCTTCTTTGC--GTCAATCTTATT-ACTTGTGTGGCTAAATTTTAGATAATTTTAGCCACGTAAGAGAAAAAAAA----AGCCACTTAAATGC--TGTTTTTTAAG---T--GACTAAAAACAGCCACGTAATTATTTTTCAACTGCTTTTCAACTGTCCATAAAAATTGCTAACCCTAAACCCTAGACACTTAGACACCTAGACCATTT---GTTTGCCTG--GACGGACTGAC--A---GACGGACGGtggggagaaca
gi|4 : TAAAAATATGTCCA-TAG--GACATGGATGCCCCTGC--TATATGTTAGTAGTAGATCTTACCAAAAATCAAT----GT-T-----GAAAA-G--GGACCAT---CTCCTGTAAAATTTGACCGACATTGACAAATATCAAACTTGACCTGTATTT-ATAATTACAC-------C-----AAA--TA-ATAATATAATAC-ATAGACTCTTTCAGAAGTTA-T---TCAGCAG--AATCTCAT-T-----TGACAGACGTACGatggatgctgccattactatatgcccccccaaaatttttggggggcataataaattaaccgtttaatttcatacataaacagaaaataacaaatcaatcaacatcaactattgatg
gi|5 : ACGAATGAGTATTTAA---GTGGCTTCTTTGC--ACCGAGCTTATT-AACTGTGTGGC---------------------CACACAAAAGAAA-----A-AAAGCCACATAAAAGC--TGTTTTT-AAGAGTCTAGA-----AACAGCCACATAATTATTTTTCAACTGCTTTTCAACCGTCCATAAAAATTA------CTAAACCC-AGACACTTAACTAC-----CCATTC---G--Tcacgcggcagacaggggtaacacttaatgacccttcacaacttt
gi|6 : gacggGAAA--GA---CAGAT-----TGACAGATAGATATTCTAACAAACGGATCTATAATATGTGGCTACTTTATATGCCAAGCTTAT--ACATGTATTACT----------TA-TTT-AGCCACAAAATAGAGA-----T-TTAGCTGCATGA
gi|8 : cagatagactAATTAGTTACCCTCAACAGTAGACACTTGAGTAC-----CCATTT---G--TGT--G--TGCGGACAGAC--ACTTGACAAAC
gi|9 : AAATACTGTCAAAACTAGAAATGTGTCAA-TAC--AACCTGGATA-CCCAAC--TATA---------A-GAT--AGT---AAAT---T----TT-A---CCGAAAACA--GG-CTTTAA-CTCCTGTAAAGTTTGACCatacaacaggcagacaaaaggaaggtaaacctgaagtgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAGATGGACGGGCAGACAGACGCTGCCATTACTATATGCCACATCAAACATTTGCGTAAACACTCCTTACCATATTTTACTGATAAATTGAGGTAATAAAAAATATTTAAAACTATTGCTG
Unaligned ( gi|12 ): TATAAATAATTATGTTATCAGGATATGGATGTCCCAGCTGTATGTTAGTAAGTATTATCAAAGGTTGAAGA
Alignments
lowQualScore : 2 1 33333333 11 333333333333 22222222 333333333333 33333333333333 1 777777777777 11 1 2222 11 5555555555555 111 3333333333333 222222222 22222 88888888888888888 1111 11 111 11111 2222222 111111 333333
lowQualScore : 6 3 7 99999999 3 1 11 777777777777 33333333 2 666666666666 00000000000000 0 0 2 1 777777777777 88 88 1 3 7 7 9999 33 4444444444444 6 1 1 1 000 77 0 0 5 1 8888888888888 1 777777777 11111 11111111111111111 3 4 3333 6 11 000 4 66666 1111111 333333 1 444444
lowQualScore : . . . ........ . . .. ............ ........ . ............ .............. . . . . ............ .. .. . . . . .... .. ............. . . . . ... .. . . . . ............. . ......... ..... ................. . . .... . .. ... . ..... ....... ...... . ......
lowQualScore : 7 3 3 77777777 7 0 00 888888888888 00000000 5 888888888888 00000000000000 7 7 0 0 777777777777 33 33 0 3 3 3 3333 88 2222222222222 3 7 7 0 000 99 7 7 7 7 0000000000000 4 111111111 88888 00000000000000000 2 2 0000 5 88 000 2 77777 3333333 444444 4 000000
consensus : NAAATA-TG-CAAAACTAGAAATGTGTC-A-TAG--GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATA-----T-TTAGCCACATAAAAGCATTGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
Reference ( family-350 ) : NAAATA-TG-CAAAACTAGAAATGTGTC-A-TAG--GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATA-----T-TTAGCCACATAAAAGCATTGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
gi|1 : AAATA-TG-CAGA-CTAGAAATGTGTC---T-GCTGACATGAATGTCTTAAC--TAT----------T-GAT--TGG---AAATCAAT----TT-TTCACCGAAAA-G--GG-CCAT-AACTCTTGTAAAAGTTGACCGACATTGACGAAAATGAAACTTATCTTGTATTTTATAATAAAACA--TGTACAAG-AAAACTTTTTTACTA-AATACAA-AGAACCCATCAGAAGTAA-CAGATCAGAAA--AA---CA--CATTCCTG-CAGACGGACATACTAACAAAGGGGTATTTAA---GTGGCTTCTATGC--GCACAGCGGAAT-TTTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATG-----TATTAGCCACATAAAAGCATTATTTTT--------------------AGCC---CAAT--------AACT-TTTTTCAACCGTCCAAAAAAATAAATAACCTTAAACCCCAGACACTTAAATAC-----CCATTT---G--TGC--G--GACGGACAAACTGA--TGACAGACAG
gi|10 : aAAATTATT-----TTAACCCCAGACACTTAAACCT-----CCATT-------TGG--G--GACACATGGAC--A---GACAGATGgag
gi|11 : aagaatGGCTTCTATGC--ACACAGCTGATT-ATTTTTGTACCTA----------A-TTTTAGCAACACAACAGGTA-----T-TTAGCCAAATAAAaaggaagcggcaac
gi|13 : CAGATGTTCTAACAAATGGTTTATTCA---GTGGCTTCTTTGG--ACCCAGCTGGTT-AGTT
gi|14 : AAATAATA-CAAAACCAGAAATGTGTC--------GACATGAATGTCCTCAC--TAT----------T-GAt
gi|15 : CTAAAACTGTGTC-AATAG--GACATAGATGCCCCTACAGTAT----------T-
gi|16 : -TTTTGGTCACACAACAGAT------T-TTAGCCACATAAAACCATTTTTTTctgg
gi|17 : GACGGACGGACTTTCTAACGAATGGGTTGTTAA---GTAG
gi|18 : gacgTAGAAATGTGTCTA-TAG--GACATGGATGCCCC
gi|2 : AT----------T-GAT--TGC---AAAACAATAATTTTGT---CCAAAAA-CTTAG-TCA--A-CTTCTGTAATATATGACCAATGTAGACATTTATCAAACTTGACCAGTATTTCAAAATTATACAACT--ACATGCAAAA--TATCTATTA-AACACAATAGACCCTTCCAGAAGATATT-GACCAGAAACCAA---C---T-----TGAC-CAC-GACGTTCTAACAAATGGGTGTTTAA---GTGGCTTATTTGC--AACCAGCTGATTAACTTGTGTGGTTA---------AA-TTTTAGTCATACAACAGAT------T-TTGGCCACATAAA------GTGTAT-A--------GA-----AACAGTCACATGATTA-ATTTCAACCATTTTCCAACTGTCTG-AGAAATTACTAACCCAAAATCCTGCATACTTAAATAC-----CCATTCTGAG--TGT--GAAAACAGAAGGAtg
gi|3 : GACGGACGGACTTTCTCACGAATGGGTATTTAA---GTGGCTTCTTTGC--GTCAATCTTATT-ACTTGTGTGGCTAAATTTTAGATAATTTTAGCCACGTAAGAGAAAAAAAA----AGCCACTTAAATGC--TGTTTTTTAAG---T--GACTAAAAACAGCCACGTAATTATTTTTCAACTGCTTTTCAACTGTCCATAAAAATTGCTAACCCTAAACCCTAGACACTTAGACACCTAGACCATTT---GTTTGCCTG--GACGGACTGAC--A---GACGGACGGtggggagaaca
gi|4 : TAAAAATATGTCCA-TAG--GACATGGATGCCCCTGC--TATATGTTAGTAGTAGATCTTACCAAAAATCAAT----GT-T-----GAAAA-G--GGACCAT---CTCCTGTAAAATTTGACCGACATTGACAAATATCAAACTTGACCTGTATTT-ATAATTACAC-------C-----AAA--TA-ATAATATAATAC-ATAGACTCTTTCAGAAGTTA-T---TCAGCAG--AATCTCAT-T-----TGACAGACGTACGatggatgctgccattactatatgcccccccaaaatttttggggggcataataaattaaccgtttaatttcatacataaacagaaaataacaaatcaatcaacatcaactattgatg
gi|5 : ACGAATGAGTATTTAA---GTGGCTTCTTTGC--ACCGAGCTTATT-AACTGTGTGGC---------------------CACACAAAAGAAA-----A-AAAGCCACATAAAAGC--TGTTTTT-AAGAGTCTAGA-----AACAGCCACATAATTATTTTTCAACTGCTTTTCAACCGTCCATAAAAATTA------CTAAACCC-AGACACTTAACTAC-----CCATTC---G--Tcacgcggcagacaggggtaacacttaatgacccttcacaacttt
gi|6 : gacggGAAA--GA---CAGAT-----TGACAGATAGATATTCTAACAAACGGATCTATAATATGTGGCTACTTTATATGCCAAGCTTAT--ACATGTATTACT----------TA-TTT-AGCCACAAAATAGAGA-----T-TTAGCTGCATGA
gi|8 : cagatagactAATTAGTTACCCTCAACAGTAGACACTTGAGTAC-----CCATTT---G--TGT--G--TGCGGACAGAC--ACTTGACAAAC
gi|9 : AAATACTGTCAAAACTAGAAATGTGTCAA-TAC--AACCTGGATA-CCCAAC--TATA---------A-GAT--AGT---AAAT---T----TT-A---CCGAAAACA--GG-CTTTAA-CTCCTGTAAAGTTTGACCatacaacaggcagacaaaaggaaggtaaacctgaagtgc
blockSeqs : A T A AATAG T C AG ATGTTAGTAGTA CTTACCAA C AATTTTGTC CAGGCTTTAA C T AACTACATGC . TC T T A T TTG CC TCTCATT G A G T TAT AT A T AAATTTTAGATAA T AAAAAAA ACCAT TAAGTGACTAAA A A TATT A AT CTA C CTAGA CTGAG TGAA G ACTT
blockSeqs : C . A TATAG C T . AA TGC C TTAC CTTAGTCAA . C C . A A . . T T . CAGAT G G T T . . . G AAA T TAT TGC AAGAGTCTAGA A G TATT G AT CTA T . TGTT CCTG G A
blockSeqs : CATAG C T . T AGT . GTT GGGACCAT . CT A G G G . . . C AA T AAA AGC AGA A A TAA G G GTT T . CG GG T A
blockSeqs : AATAC C A . T A G T A . . . C TA T GAT . TT T . TG TG A
blockSeqs : . . T . A G A . . . A . . TT . . . .
blockSeqs : . A C . . . C . TT
blockSeqCons : NATAG*** AAA********** NAT****** C****
originalCons : NAAATA-TG-CAAAACTAGAAATGTGTC-A-TAG--GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTA---------TA-TTTTAGCCACACAACAGATA-----T-TTAGCCACATAAAAGCATTGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
finalCons : NAAATA-TG-CAAAACTAGAAATGTGTCNATAG---GACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTAAA----------TTTTAGCCACACAACAGANAT------TTAGCCACATAAAC----TGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAGATGGACGGGCAGACAGACGCTGCCATTACTATATGCCACATCAAACATTTGCGTAAACACTCCTTACCATATTTTACTGATAAATTGAGGTAATAAAAAATATTTAAAACTATTGCTG
Unaligned ( gi|12 ): TATAAATAATTATGTTATCAGGATATGGATGTCCCAGCTGTATGTTAGTAAGTATTATCAAAGGTTGAAGA
Alignments
lowQualScore : 2 1 11 333333333333 22222222 333333333333 33333333333333 1 777777777777 11 1 2222 11 5555555555555 111 1 2222222222 222222222 22222222 77777777777777777 1111 11 111 11111 2222222 111111 333333
lowQualScore : 6 3 7 88888 3 1 11 777777777777 33333333 2 666666666666 00000000000000 0 0 2 1 777777777777 88 88 1 3 7 7 9999 33 4444444444444 6 1 1 1 000 77 0 0 5 1 1 5555555555 666666666 5 44444444 99999999999999999 3 4 3333 6 11 000 4 66666 1111111 333333 1 444444
lowQualScore : . . . ..... . . .. ............ ........ . ............ .............. . . . . ............ .. .. . . . . .... .. ............. . . . . ... .. . . . . . .......... ......... . ........ ................. . . .... . .. ... . ..... ....... ...... . ......
lowQualScore : 7 3 3 22222 7 0 00 888888888888 00000000 5 888888888888 00000000000000 7 7 0 0 777777777777 33 33 0 3 3 3 3333 88 2222222222222 3 7 7 0 000 99 7 7 7 7 3 0000000000 333333333 7 77777777 00000000000000000 2 2 0000 5 88 000 2 77777 3333333 444444 4 000000
consensus : NAAATA-TG-CAAAACTAGAAATGTGTCNATAGGACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTAAATTTTAG----------CCACACAACAGATA-----T-TTAGCCACAT-AA----A--CTGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
Reference ( family-350 ) : NAAATA-TG-CAAAACTAGAAATGTGTCNATAGGACATGGATGCCCCNAC--TAT----------T-GAT--TGC---AAATCAAT----TT-T---CCGAAAA-G--GG-CCAT-A-CTCCTGTAAAATTTGACCGACGTTGACGAATATCAAACTTGACCTGTATTTCATAATTANACA--T--ACA-G-AAAA--TATNTANTA-AATACAATAGACCCTTTCAGAAGTTA-T-GATCAGAAA--AA---CA--T-----TGACGGACGGACGTTCTAACGAATGGGTNTTTAA---GTGGCTTCTTTGC--GCCCAGCTGATT-ACTTGTGTGGCTAAATTTTAG----------CCACACAACAGANA-----T-TTAGCCACAT-AA----A--CTGTTTTT-AAG---C--GA-----AACAGCCACGTAATTATTTTTCAACTGCTTTTCAACCGTCCGTAAAAATTANTAACCCTAAACCCTAGACACTTAAATAC-----CCATTC---G--TGC--G--GACGGACGGAC--A--TGACAGACGG
gi|1 : AAATA-TG-CAGA-CTAGAAATGTGTCTGC-TGACATGAATGTCTTAAC--TAT----------T-GAT--TGG---AAATCAAT----TT-TTCACCGAAAA-G--GG-CCAT-AACTCTTGTAAAAGTTGACCGACATTGACGAAAATGAAACTTATCTTGTATTTTATAATAAAACA--TGTACAAG-AAAACTTTTTTACTA-AATACAA-AGAACCCATCAGAAGTAA-CAGATCAGAAA--AA---CA--CATTCCTG-CAGACGGACATACTAACAAAGGGGTATTTAA---GTGGCTTCTATGC--GCACAGCGGAAT-TTTTGTGTGGCTATATTTTAG----------CCACACAACAGATG-----TATTAGCCACAT-AAAAGCA--TTATTTTT--------------------AGCC---CAAT--------AACT-TTTTTCAACCGTCCAAAAAAATAAATAACCTTAAACCCCAGACACTTAAATAC-----CCATTT---G--TGC--G--GACGGACAAACTGA--TGACAGACAG
gi|10 : aAAATTATT-----TTAACCCCAGACACTTAAACCT-----CCATT-------TGG--G--GACACATGGAC--A---GACAGATGgag
gi|11 : aagaatGGCTTCTATGC--ACACAGCTGATT-ATTTTTGTACCTAA-TTTTAG----------CAACACAACAGGTA-----T-TTAGCCAAAT-AA----A--aaggaagcggcaac
gi|13 : CAGATGTTCTAACAAATGGTTTATTCA---GTGGCTTCTTTGG--ACCCAGCTGGTT-AGTT
gi|14 : AAATAATA-CAAAACCAGAAATGTGTC-----GACATGAATGTCCTCAC--TAT----------T-GAt
gi|15 : CTAAAACTGTGTCAATAGGACATAGATGCCCCTACAGTAT----------T-
gi|16 : TTTTGG----------TCACACAACAGAT------T-TTAGCCACATAAA----A--CCATTTTT-ctgg
gi|17 : GACGGACGGACTTTCTAACGAATGGGTTGTTAA---GTAGtt
gi|18 : gacgTAGAAATGTGTCTATAGGACATGGATGCCCC
gi|2 : AT----------T-GAT--TGC---AAAACAATAATTTTGT---CCAAAAA-CTTAG-TCA--A-CTTCTGTAATATATGACCAATGTAGACATTTATCAAACTTGACCAGTATTTCAAAATTATACAACT--ACATGCAAAA--TATCTATTA-AACACAATAGACCCTTCCAGAAGATATT-GACCAGAAACCAA---C---T-----TGAC-CAC-GACGTTCTAACAAATGGGTGTTTAA---GTGGCTTATTTGC--AACCAGCTGATTAACTTGTGTGGTTAAATTTTAG----------TCATACAACAGAT------T-TTGGCCACAT-AA----A----GTGTAT-A--------GA-----AACAGTCACATGATTA-ATTTCAACCATTTTCCAACTGTCTG-AGAAATTACTAACCCAAAATCCTGCATACTTAAATAC-----CCATTCTGAG--TGT--GAAAACAGAAGGAtg
gi|3 : GACGGACGGACTTTCTCACGAATGGGTATTTAA---GTGGCTTCTTTGC--GTCAATCTTATT-ACTTGTGTGGCTAAATTTTAGATAATTTTAGCCACGTAAGAGAAAAAAAA----AGCCACTT-AA----ATGCTGTTTTTTAAG---T--GACTAAAAACAGCCACGTAATTATTTTTCAACTGCTTTTCAACTGTCCATAAAAATTGCTAACCCTAAACCCTAGACACTTAGACACCTAGACCATTT---GTTTGCCTG--GACGGACTGAC--A---GACGGACGGtggggagaaca
gi|4 : TAAAAATATGTCCATAGGACATGGATGCCCCTGC--TATATGTTAGTAGTAGATCTTACCAAAAATCAAT----GT-T-----GAAAA-G--GGACCAT---CTCCTGTAAAATTTGACCGACATTGACAAATATCAAACTTGACCTGTATTT-ATAATTACAC-------C-----AAA--TA-ATAATATAATAC-ATAGACTCTTTCAGAAGTTA-T---TCAGCAG--AATCTCAT-T-----TGACAGACGTACGatggatgctgccattactatatgcccccccaaaatttttggggggcataataaattaaccgtttaatttcatacataaacagaaaataacaaatcaatcaacatcaactattgatg
gi|5 : ACGAATGAGTATTTAA---GTGGCTTCTTTGC--ACCGAGCTTATT-AACTGTGTGGC---------------------CACACAAAAGAAA-----A-AAAGCCACAT-AA----AAGCTGTTTTT-AAGAGTCTAGA-----AACAGCCACATAATTATTTTTCAACTGCTTTTCAACCGTCCATAAAAATTA------CTAAACCC-AGACACTTAACTAC-----CCATTC---G--Tcacgcggcagacaggggtaacacttaatgacccttcacaacttt
gi|6 : gacggGAAA--GA---CAGAT-----TGACAGATAGATATTCTAACAAACGGATCTATAATATGTGGCTACTTTATATGCCAAGCTTAT--ACATGTATTACTTA--TTTAG----------CCACAAAATAGAGA-----T-TTAGCTGCAT-GA----
gi|8 : cagatagactAATTAGTTACCCTCAACAGTAGACACTTGAGTAC-----CCATTT---G--TGT--G--TGCGGACAGAC--ACTTGACAAAC
gi|9 : AAATACTGTCAAAACTAGAAATGTGTCAATACAACCTGGATA-CCCAAC--TATA---------A-GAT--AGT---AAAT---T----TT-A---CCGAAAACA--GG-CTTTAA-CTCCTGTAAAGTTTGACCatacaacaggcagacaaaaggaaggtaaacctgaagtgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAGATGGACGGGCAGACAGACGCTGCCATTACTATATGCCACATCAAACATTTGCGTAAACACTCCTTACCATATTTTACTGATAAATTGAGGTAATAAAAAATATTTAAAACTATTGCTG
Unaligned ( gi|12 ): TATAAATAATTATGTTATCAGGATATGGATGTCCCAGCTGTATGTTAGTAAGTATTATCAAAGGTTGAAGA