lowQualScore : 22 22222 2222 22222222 111 4444444444444444444444 11 5555555555555555555555555555555555555555555555555 111111111 222222222 1111111 222 2222 1111111 777777 1 1 111111 22222 111 11111 555555555555555
lowQualScore : 7 22 77 3 4 1 1 8 00000 7777 88 77 99999999 444 9 6 5 1111111111111111111111 33 5555555555555555555555555555555555555555555555555 1 9999 666666666 1 7 4 77 0 777777777 0 8888888 666 0 5 2222 5 4 8888888 7 555 000000 1 0 0 4 666 66 8 9 6 55 66 666 3 9999 4 4 777 6 4 55 9 777 2 4 111111 88 33333 4 99 1 0 111 55 4 5 6 4 4 11111 55 5 1 66 7 5 4 99 55 222222222222222 7777 888 5 5 3
lowQualScore : . .. .. . . . . . ..... .... .. .. ........ ... . . . ...................... .. ................................................. . .... ......... . . . .. . ......... . ....... ... . . .... . . ....... . ... ...... . . . . ... .. . . . .. .. ... . .... . . ... . . .. . ... . . ...... .. ..... . .. . . ... .. . . . . . ..... .. . . .. . . . .. .. ............... .... ... . . .
lowQualScore : 8 00 00 8 0 4 4 0 00000 6666 22 22 00000000 000 5 7 3 1111111111111111111111 66 3333333333333333333333333333333333333333333333333 0 4444 888888888 9 2 5 22 1 999999999 1 4444444 888 5 4 6666 7 3 1111111 3 000 000000 4 2 4 5 999 99 8 0 6 11 11 222 9 4444 4 0 888 0 0 55 2 222 6 0 555555 66 11111 0 55 4 7 000 55 0 0 2 0 0 00000 55 7 6 11 4 0 0 55 00 333333333333333 8888 888 0 0 7
consensus : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA-TG-----CTTT-TAATCGCTAATNTTGGCAAGA--------AAA---CATATTCACCATTGAA-GCAATNCCCAGTACAGTAAAATNTGTTA---CA-TATCAATACCCAGT--ACAC--A---TAAATG--CAA---TNCCCAGTACACCGCCGACTT--------TCGTTTTA----GTC--C--TATTTCTCGGCCATTTCATTANATACAACCCTGAA-ATTTGGCGTAC-TTGTTC------TATGTGTCTAACTTACTAAAT---CGT-TCGATTCAG------AANTTTCACAACATGGCAAAAA-A---TAAGACGATATTGAGTAAAATGTGCACATGGCACC--CGGTTATCAAATGATAAGGTTGACAGNGAAT--CG--CAANTT----TCATCAT-TCCA---GCATAGT-TTTG--AGTGATTTCC-CGTGTTGTA-G------AGCATTTACACATCAGTTACTTATT-AATCACAT--AGATAGTTT---ATGT--T-GTAGTCAC-A-A-A---A--ACANTAGATAATTAGGTTTGAACT--TACCTTGTTGA-CAAAAGTCATG-TTGAA--TTTT--GGN-----AA---AAATC-T--T---A-TCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
Reference ( gi|3 ) : TAATGCCCATGTAATTGTGAATACATAACTGTTTTACACATTTTAAAGCAAGTTAAA-TG-----CTTT-CA-TCGCTAATTTTGGCAAGA--------AAA---CATATTTACAATTGAA-GCAATCCCCAGTACAATAAAATTTGTTA---CA-TATCAATACCCAGT--ACAC--A---TAAATG--CAG---TCCCTACTAAACTGACGATTT--------TTGTTTTA----GTC--C--TATGTCTCGGTCATTTCATTAGATACAACCCTGAA-ATTGAGCGTACCTTGTTC------CATGTGTCTTATTTACTAAAT---TGT-TCGATTCAG------AATTTTCACAACATGGCAAAAAAAAAAGAAGACGATATTGAGTAAAATGTGCACATGGTACC--CGGTGATAAAATGAAAAGGTTGACAGAGAAT--CG--CAAGTT----TCATCAT-TCGA---GTGTAGT-TTTG--AGTGAATTCC-CGTGTTGTA-G------AGCATTTGCACATTAGTTAATTAAT-AATCACAT--AGATAGTTT---ATGT--T-GTAGTCGC-A-A-A---A--ACACTAGATAATTAGGTTTGAACT--TACCTTATTGA-CAAAAGTCATG-CTGAA--TTTT--GGT-----AT---AAATT-T--T---A-TCA-CTTTAGGGCAATATCCGGTGCACGTTGTACCA
gi|1 : ATGCCCATGTAATTGTGACTACATAACTGTATTGCACATTTTAAAGTAAATTAAA-TG-----CTTT-AAATCGTTAATGTTGACAAGA--------AAA---CATATTTACGATTGAA-GCAATTCCCAGTACTGTAAAATTTGTTA---CA-GATCAATACTCAGT--ACAT--A---TAAATG--CAA---TCTCCAGTACATCGCCAATTT--------TCGTTTTA----GTC--C--TATTTCTCGG-CATTTCATTAGATACAACCCTGAA-ATTTACCTTACGT-GTTC------TATGTGTCTAACTTACTAAAT---CGT-TCGATTCAT------AATTTTAACAACATGGCAAAAA-----TAAGACGATATTAAGTAAAATGTGCACATGGCACC--CGGTGATAAAATAATAAGGTTGACAGAGAAT--CG--TAAGTT----TCATCAA-TCCA---GTATAGC-TTTG--AGTGATTTAC-CGTGTTGTA-G------AGCATTTGTACATCAGTTACTT-AT-AATCACAT--AGATAGTTT---ATATGAT-GTTGTCAC-A-ATT---A--ACACAAGAAAATTAGGTTTGAACT--TACCTTGTTGA-CAAAAGACATG-CTGAA--TTTT--
gi|2 : ttgtcgcagtggtaacatgagtacattgtgaatataaaatggaaagagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtaaaacaagcatgatataagcgaatactagtcgccagtatcctagtattttcaacgttttcaaagcagttttttttgtgattttaaatgctgcttgcgatcagtttcctttttatcggtcactattccatccaatgcactcaacaaaacggtcagtcatactttctgtatttttgtttatatttcaaataaattgtatagaaggttttgagtaaaaagcagtattaaacattacataaaaacggaagttattcttccaaataccataatgcaagtttcacccaccacttttttcacatctgcaaagtttcaatcaattacacttactgggtgtaactgctgatatggcggacaaacagacgagcgggaagtttgcaacttcttaaaacgttctATGCCCATGCAATTATGACGACATAACTGTTTTGCACATTTTAAAGCAAGTGAAA-TG-----CTTT-TAATCGCTGATAATGGCAAGC--------AAA---AATATTTACCACTGAA-GCAATCCCCAGTACCGGTAAATCTGTTA---CA-GATCAATACCCAGT--ACAC--A---TAAATG--CAA---TGCCCAGTACACTGCTGA-TT--------TTGTTTTA----GTC--C--TATTTCTCGGCCATTTCATTAGATACAACCCTGAT-ATTTGGCATA-CTTGTTC------TATGTGTCTAACTTa
gi|11 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatATACCAATGAAATTGTGACTACATAAATGTTTGGCATATTTTACCGCATATTTAA-TG-----CTTT-TAATCTCTAATGTTGGCAAGA--------AAAAAACATATTCAGCATTAAA-GCATTTCCCAGTACAGTAAAATATGTTA---CA-T-TTAAAAACCATTT-ACAT--A---TAAATT--CAA---TACCAAACACACAGTCGCTTT--------TCGTTTTA----GTC--CTTTTTGTTTTGGCAATTTCATggcaaaaataagacgatattgagtaaaatgtgcacattgcacacggttatcaaatgacaaggttgacaaagaatcgcaagtttcatcattccagtatagttttgagtgatgtcccgtgttgtagagcatttgcacatcagttacgtatcaatcacatagatagtttatgttgcagtcacaaaaaacactagataattagattttaacttaccttgttgacaaaagtcatgttgaatttgaga
gi|13 : tagcttactttaaacgttatATACCCATAAAATTGTGA-CATATAACTGTCGAGCACATTT-AAGACAAGTTTAA-TG-----CGTTGTA-TTTCTAATTTAAGCAAAATAAATATAAAA---CATACGCATCATTGAA-ACAATATCCACTACATTAAA-TAAGTTA---CA-TATCAATACTCAGT--GCACTTAAGTTAAATAATCAG---TCC-------ATCGCCAACTT--------TCGTTTCA----GTT--C--TATTTCTCGGACATTTCATTACATACAACCATGAGCATTGaacgtgttcgatatgtctaattaaataaaaa
gi|9 : tttaaaacgttatAACTGTTTTGCACACTTCAATGCATGTTAAACTGGTGTTTTTT-CA-T-----ATTATCGCAACA--------AAA---AATATTCATCATTGAC-ACAATACTCAGTGC-------------A---C----TTAATACAGAAT--ACAA--A---TAAATG--TAAAACACCGCAC---ACCGCCCTCGT--------TCGTTTCA-----TCAAC---ATTTACTAGTCATTTCAATGAATACGATTCTGAA-ATtcttactttatgt
gi|6 : ACAACCAAATGCAACACCCTGTACAATT---TTTGTGAGAACAATTTCAATACCCAGT--ACAC------------------------TGCTAA--------CTT--------TCATTTTG----GTC--T--TATTTCTCGGACATTCCATTACTTACAACACTGA----TGTGTG------GTTC------TATATGTCTAACTAAATGAATC--TGT-TT-ATTCAG------ATGTTTCTCAACATAGCAAAAA-----TGAGATGATGTTGAGTAAAATGTGCACATGACAAC--CGTTTATCAAATGACAAAGTTGGCAGTAAAT--CG--CAATTT----TCATCAT-TACA---GCATAGT-TATG--AGTCATTTCA-CATGTTGAA-G------AGCATTTACACATGAGTTATTTATT-TATCACAT--GAAGCATTC---ATGT--T-G-----------------------TAGATAAATGGGTTTGAATTTATATCTTGTTGA-CTTAAATCATT-TGGAA--TTTTA-GAA-----AT---AAAgttgcccagtttctctttgtgtttcaatcatcctgccagaaattcaatgaatgaaatgggctcatgacacccatttctgaagttgacatttaatatttccatcaccatttcaagaggtaagctttagttaacgtgtttcagagcaataacacatcag
gi|4 : aattgcaatcctcagaCAATCCCCAGTACATCAAAAT--G------------CAATACCCAGTTTA-AC--T---TTTGTG---AGAA-TACCCAGTACACAAGCGATTT--------TTA------------------A------GGTCACTTTATTGCAAACAATACTGAA-ATTTAGCTTAC-TTATTC------TAAGTGTCTCACCAAATACATA--TGT-CC-ATTCAA------TAATTTCGTAACATAGCAATAATA---GAGAACAATATTGAGCCACATAAGCACATAACACC---GGTTAACAAATGCTAAGATTGTCAGCGAAT--CG--CAATTT----TCATCAT-TTCA---GCACAGT-TT-A--AG-GCATTTCACGTGTTGTA-G------AGCATTTAAA-ATT-GTTG-----T-AATCACAT--AAATCGTTT---ATGT--T-ATTATCAC-A-A-A---ATAACAGTAGATAGTTGGGTTCGATAT--TACCTTGTTGA-AAAAAATCATT-TAGAA--TTTTTGGGA-----AA---AAAAC-G--T---A-TCA-CTTAAGAACAATAac
gi|10 : cccAACTGACGGCTTAAAAACGCTTCTTTGAAATTGTC--G--TAT-TCT--GT-ATTTCATAACATACAACCTTGAA-A---GGTGT----TGTCC------TGTGTGTCT-A---ACAAAATATATATATCGATTCGG------AA---------CATGGCAAAACAAATCGAA------ATTGAGTAAAATGTGAACGTGCCACC--CGTTTATCAAATGATAAATTTGACAGTGAAT--C------------------------A---GCATAGT-ATTG--AGTCAATTCA-CGTGTTGTA-GGCCTATAGCATTTACACATC-GT--AT---T-AATCACATTCAG-CA-TTT---ATGT--T-ATAGTCAC-ATA-ATATA--ACAGTAGATAATTTGGTTTGgtcacacacacatatttacc
gi|7 : ACAATTT--------TCATTTTA----GTC--A--TATTTCTCGGCCATTTTATTAGATACAACCCTGAA-ATTTGGCATAC-TTGTTC------TATGTGTCTACCTTACAAAAT---AAT-TTGATTCAC------AATTTTAACAACATGCCAAAAA-----TAAGATGATATTGAGTAAAATGTATACATGGCACC--CAGTGATAAATTGATAAGGATGACAGAGAA----------GTT----TCATCAT-TCCA---GTATAGTATTTG--AGTGATTTTC-CATGTTG---G------AGCATTTGCACATCAGTTACTTATT-AATCACAT--AGATAGTTTT--ATGT--T-GTAGTTAC-A-A-A---A--ACATTAGAT-------------CT--TACCTTGTTGA-CAA--GTCATG-CTGAA--TTTG--AGA-----AA---AAATC-T--T---A-TCA-CTTTAGGGCAATAcaatagccggtgtacgttgtacc
gi|8 : atCTTGTTCTACATGCATGTGTCTT---TAC---AT---CAT-ATGATCCAATCATGTAGTTTTCATGACCTCTCAGAAAAA---------GATATTGAATAAAATGTA---ATTGTGTCACCATTTTTCAAGTGGTATGGTTGACA----AT--CGATCAACTTACTTTCATCATGTCAATACATATA---TTTC--A-TGTATT-------TTATA-G------A--ATTCACACATCAGATA-CTAATTAGTCGCCT--A---AGTTTTGTATGC--T-GTGGCGGG-A-ATA---A--ACAGTAAGTCATTAGATTTCAACC--TTCACTGCTGAACAAAA--CATAACAGGA--TTTT----T-----A----AAATT-T--TCTTA-CCATCTTTAGG-CAATATCTTATGCACGTTGTAC
gi|12 : tatatatgatgcggaagttcttcacaTTCTTC------TATTTGTCTAACTTACTAAAT---CGT-TCGATTCAG------AACTTTTAGAACATGGC-----AAAAATAAGACGATATTGAGTAAAATG----------------GGTTATCAAATGATAAAGTTGACAGAGAGTCGCG--CATGTT----TCACCAC-TCCA---GTACAGA-TTTG--AGTGATTCCC-CGTGTTAAA-G------AGCATTTGCGCACCAGTAACTTATT-AATCACATA-AGACAGTTT---ATGT--T-ATAGTCAC-A-A-A---A--TCACTAGATAATTAGATTTTAACT--TACTTTGTTGA-CAAaa
gi|2 : atAACTTGGCAAAAA-----TAAGACGATATTGAGTAAAATGTGCACATTGCACA--CGGTTATCAAATGACAAGGTTGACAAAGAAT--CG--CAAGTT----TCATCAT-TCCA---GTATAGT-TTTG--AGTGATGTCC-CGTGTTGTA-G------AGCATTTGCACATCAGTTACGTATC-AATCACAT--AGATAGTTT---ATGT--T-GCAGTCACAA-A-A---A--ACACTAGATAATTAGATTTTAACT--TACCTTGTTGA-CAAAAGTCATG-TTGAA--TTT
gi|14 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatatgcccatgcaattatgacgacataactgttttgcacattttaaagcaagtgaaatgcttttaatcgctgataatggcaagcaaaaatatttaccactgaagcaatccccagtaccggtaaatctgttacagatcaatacccagtacacataaatgcaatgcccagtacactgctgattttgttttagtcctatttctcggccatttcattagatacaaccctgatatttggcatacttgttctatgtgtctAAATGATAAGGTTGGCACTGAAT--CA--CAATTT----TCATTAT-TTCA---GCATAGT-TTTTTTAGTCATTTCA-CGTGTTTCA-G------AGAATTTACACATCAGTTACTTAAT----CAAAT--AAGTAATTT---ATTT--T-GTAGTTAC-A-A-A---A--ACAGTTAATAATTAGTTTTGAAGT--TTCATTTTTGA-CAAAAATCAT--TTGGATTTTTT--TTT-----TT---AAATC-T--T---A-TCA-TATTAGAGCAATATTCGTTGTACGTTGTATCAgaga
gi|15 : cT-TTTG--CTTCATTTCA-CATGTTTTAAG------AGCATTTACACATCCGTTATTTATT-AATCACAT--AAATCCTTT---ATGT--CAGT-GTCCC-A-A-A---A--AAATAAAATGATTTGGTTTGAATT--TACc
gi|18 : ggtagatctaattatcactaccttTCGTG-TTGAA--TTTG--AGA-----AA---AAATC-T--T---A-TCA-CTTATGGGCAATATCCGGTTTATGTTGTACC
gi|16 : tTGAG--TCTT--GATTGTCAAA---AGATT-C--T---AATCA-TTTTAGAGCAATGTACGGTATACGTTGTAC
gi|19 : gaaatcgggttcatatgcactgatagtgacgataactatgccacatataAA--TTTT--G-C-----ATCGGAAATT-TCTT---A-TCA-TTTTAAGGCAATATCCGATGTACGTTGCACC
gi|17 : --TTTT----T-----AA---GAATTCT--T---A-TCA-CATTAAGGCTATATCCGGTGTATGTTGTACCA
gi|10 : tttatgattccgtttttcaataattattcGCAATAGCCGGTGTACGTTGTACCcac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTGTCGAGGTGGTAACATGAGTACATTGTGATTCGAAAATAAAAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAAGTAAGTGCGATATTAGCGAGCCCTTATCAGTTGCCAATATTCTTGTATTTACCAAGTAAGTTTTCAAAGCAGTTAAAATTAGTTTGTTAATCCTGCTCGCGATCAAGTTTCTTTTTATCTGTCACTATTTCACTAAATGCACTCAGCAAAAAAGGGCAATCATACTTTCTGTATTTTTTTGTATTTCAAATATATCGTATAGAAGGTTTTGAGTAGGGAGCGGTATTAAACATCACATAAAAACGAAAGCTATTCTTCCAAACATCACAA
Alignments
lowQualScore : 1111 22222222 111 2222222222 222222222222 111111 111111 22222222 1111111111 11111 2222222
lowQualScore : 1 5 1 1 4444 888 6 1 99 44444444 111 1 7777 0 0000000000 5 66 444444444444 5 1 2 4 66 66 6 1 7 3 2 000000 5 1 33 888 55 222222 5 0 4 33333333 0 0 0 2 2 1 3333333333 2 666 0 7777 0 3 44 4 4 1 3 999999 2 4 88 0 666 3 55 3 3 3 3 44444 2 0 55 4 2 8888 44 7777777 1 4 888888 4 4
lowQualScore : . . . . .... ... . . .. ........ ... . .... . .......... . .. ............ . . . . .. .. . . . . . ...... . . .. ... .. ...... . . . ........ . . . . . . .......... . ... . .... . . .. . . . . ...... . . .. . ... . .. . . . . ..... . . .. . . .... .. ....... . . ...... . .
lowQualScore : 0 6 7 0 2222 555 7 0 22 22222222 777 0 8888 1 1111111111 0 99 000000000000 0 0 2 4 11 11 4 0 3 6 8 555555 8 2 11 000 66 888888 3 1 7 66666666 7 7 9 3 3 4 5555555555 3 444 4 7777 2 3 66 6 6 9 3 666666 0 5 66 4 444 6 00 6 7 6 6 22222 3 6 55 4 2 2222 66 8888888 0 0 777777 4 4
consensus : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--A----ANTT---TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAA--TTTT--G----GNAA-AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
Reference ( family-328 ) : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTTAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATNCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATNCCCAGTACACCGCCGACTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCGTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--A----ANTT---TCATCATTCCA----GCATAGT-TTTG--AGTGATTTCCCGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAA--TTTT--G----GNAA-AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
gi|1 : ATGCCCATGTAATTGTGACTACATAACTGTATTGCACATTTTAAAGTAAATTAAA----TGCTTTAAATCGTTAATGTTG--ACAAGA--------AAA---CATATTTACGATTGAAGCAATTCCCAGTACTGTAAAATTTGTTACAGATCAATACTCA-GT--ACAT-----------ATAAATGC-AATCTCCAGTACATCGCCAATTTTCGTTTTAGTC--CTATT--TCTCGG-CATTTCATTAGATACAACCCTGAAATTTACCTTAC-GTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAT------AATTTTAACAACATGGC-AAAA-A----TAAGACGATATTAAGTAAAATGTGCACATGGCACCCGGTGATAAAATAATAAGGTTGACAGAGAATCG--T--A----AGTT---TCATCAATCCA----GTATAGC-TTTG--AGTGATTTACCGTGTTGTA-G------AGCATTTGTACATCAGTTACTTA-TAATCACAT--AGATAGTT---T-ATATGAT-GTTGTCAC-A-ATT---AACACAAGAAAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGACAT-GC-TGAA--TTTT--
gi|10 : ttgtcgcagtggtaacatgagtacattgtgaatataaaatggaaagagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtaaaacaagcatgatataagcgaatactagtcgccagtatcctagtattttcaacgttttcaaagcagttttttttgtgattttaaatgctgcttgcgatcagtttcctttttatcggtcactattccatccaatgcactcaacaaaacggtcagtcatactttctgtatttttgtttatatttcaaataaattgtatagaaggttttgagtaaaaagcagtattaaacattacataaaaacggaagttattcttccaaataccataatgcaagtttcacccaccacttttttcacatctgcaaagtttcaatcaattacacttactgggtgtaactgctgatatggcggacaaacagacgagcgggaagtttgcaacttcttaaaacgttctATTTCATAACATACAACCTTGAAA---GGTGT----TGTCCTG------TGTGTCTAACAAAATATAT-A-TATC-GATTCGG------AA---------CATGGCAAAA-------CAAATCGAAATTGAGTAAAATGTGAACGTGCCACCCGTTTATCAAATGATAAATTTGACAGTGAAT----------------------------CA----GCATAGT-ATTG--AGTCAATTCACGTGTTGTA-GGCCTATAGCATTTACACATCG------TATTAATCACATTCAG-CA-TT---T-ATGT--T-ATAGTCAC-ATA-ATATAACAGTAGATAATTTGGTTTGa
gi|10 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtGCAATAGCCGGTGTACGTTGTACCcaatagccggtgtacgttgtacc
gi|11 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtatttcataacatacaaccttgaaaggtgttgtcctgtgtgtctaacaaaatatatatatcgattcggaacatggcaaaacaaatcgaaattgagtaaaatgtgaacgtgccacccgtttatcaaatgataaatttgacagtgaatcagcatagtattgagtcaattcacgtgttgtaggcctatagcatttacacatcgtattaatcacattcagcatttatgttatagtcacataatataacagtagataatttggtttATACCAATGAAATTGTGACTACATAAATGTTTGGCATATTTTACCGCATATTTAA----TGCTTTTAATCTCTAATGTTG--GCAAGA--------AAAAAACATATTCAGCATTAAAGCATTTCCCAGTACAGTAAAATATGTTACAT-TTAAAAACCATTT--ACAT-----------ATAAATTC-AATACCAAACACACAGTCGCTTTTCGTTTTAGTC--CTTTTTGTTTTGGCAATTTCAT
gi|12 : tagcttactttaaacgttatAT-TTCTTCTA------TTTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AACTTTTAGAACATGGCAAAAA------TAAGACGATATTGAGTAAAATG--------------GGTTATCAAATGATAAAGTTGACAGAGAGTCG--CGCA----TGTT---TCACCACTCCA----GTACAGA-TTTG--AGTGATTCCCCGTGTTAAA-G------AGCATTTGCGCACCAGTAACTTATTAATCACATA-AGACAGTT---T-ATGT--T-ATAGTCAC-A-A-A---ATCACTAGATAATTAGATTTTAACT--TACTTTGTTG-ACAAaacgtgttcgatatgtctaattaaataaaaa
gi|13 : ATACCCATAAAATTGTGAC-ATATAACTGTCGAGCACATTT-AAGACAAGTTTAA----TGCGTTGTATTTCTAATTTAA--GCAAAATAAATATAAAA---CATACGCATCATTGAAACAATATCCACTACATTAAA-TAAGTTACATATCAATACTCA-GT--GCAC-----------TTAAGTTA-AATAATCAGTCCATCGCCAACTTTCGTTTCAGTT--CTATT--TCTCGGACATTTCATTACATACAACCATGAGCATTGTCTTAC-TT----TA------TGT
gi|14 : tttaaaacgttatCAAATGATAAGGTTGGCACTGAATCA--C--A----ATTT---TCATTATTTCA----GCATAGT-TTTTTTAGTCATTTCACGTGTTTCA-G------AGAATTTACACATCAGTTACTTA---ATCAAAT--AAGTAATT---T-ATTT--T-GTAGTTAC-A-A-A---AACAGTTAATAATTAGTTTTGAAGT--TTCATTTTTG-ACAAAAATCAT--T-TGGATTTTTT--T----TTTT-AA--A---T-CTTATCA-TATTAGAGCAATATTCGTTGTACGTTGTATCA
gi|15 : T-TTTG--CTTCATTTCACATGTTTTAAG------AGCATTTACACATCCGTTATTTATTAATCACAT--AAATCCTT---T-ATGT--CAGT-GTCCC-A-A-A---AAAATAAAATGATTTGGTTTGAATT--TACc
gi|16 : ggtagatctaattatcactaccttCAT-ATATGAG--TCTT--GATT-GTCA-AA--AGATT-CTAATCA-TTTTAGAGCAATGTACGGTATACGTTGTAC
gi|17 : gaaatcgggttcatatgcactgatagtgacgataactatgcca--TTTT--------TAA-GA--A---TTCTTATCA-CATTAAGGCTATATCCGGTGTATGTTGTACCA
gi|18 : tttatgattccgtttttcaataattattcTCGT-GT-TGAA--TTTG--A----GAAA-AA--A---T-CTTATCA-CTTATGGGCAATATCCGGTTTATGTTGTACCcac
gi|19 : tAA--TTTT--GCATCGGAA-AT--T---T-CTTATCA-TTTTAAGGCAATATCCGATGTACGTTGCACC
gi|2 : ATGCCCATGCAATTATGACGACATAACTGTTTTGCACATTTTAAAGCAAGTGAAA----TGCTTTTAATCGCTGATAATG--GCAAGC--------AAA---AATATTTACCACTGAAGCAATCCCCAGTACCGGTAAATCTGTTACAGATCAATACCCA-GT--ACAC-----------ATAAATGC-AATGCCCAGTACACTGCTGA-TTTTGTTTTAGTC--CTATT--TCTCGGCCATTTCATTAGATACAACCCTGATATTTGGCATAC-TTGTTCTA------TGTGTCTAACTT
gi|2 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatAACTTGGCAAAA--A----TAAGACGATATTGAGTAAAATGTGCACATTGCACACGGTTATCAAATGACAAGGTTGACAAAGAATCG--C--A----AGTT---TCATCATTCCA----GTATAGT-TTTG--AGTGATGTCCCGTGTTGTA-G------AGCATTTGCACATCAGTTACGTATCAATCACAT--AGATAGTT---T-ATGT--T-GCAGTCACAA-A-A---AACACTAGATAATTAGATTTTAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAA--TTTggcaaaaataagacgatattgagtaaaatgtgcacattgcacacggttatcaaatgacaaggttgacaaagaatcgcaagtttcatcattccagtatagttttgagtgatgtcccgtgttgtagagcatttgcacatcagttacgtatcaatcacatagatagtttatgttgcagtcacaaaaaacactagataattagattttaacttaccttgttgacaaaagtcatgttgaatttgaga
gi|3 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatatgcccatgcaattatgacgacataactgttttgcacattttaaagcaagtgaaatgcttttaatcgctgataatggcaagcaaaaatatttaccactgaagcaatccccagtaccggtaaatctgttacagatcaatacccagtacacataaatgcaatgcccagtacactgctgattttgttttagtcctatttctcggccatttcattagatacaaccctgatatttggcatacttgttctatgtgtctATGCCCATGTAATTGTGAATACATAACTGTTTTACACATTTTAAAGCAAGTTAAA----TGCTTTCA-TCGCTAATTTTG--GCAAGA--------AAA---CATATTTACAATTGAAGCAATCCCCAGTACAATAAAATTTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AGTCCCTACTAAACTGACGATTTTTGTTTTAGTC--CTATG--TCTCGGTCATTTCATTAGATACAACCCTGAAATTGAGCGTACCTTGTTCCA------TGTGTCTTATTTACTAAAT-T-GTTC-GATTCAG------AATTTTCACAACATGGCAAAAA-AAAAAGAAGACGATATTGAGTAAAATGTGCACATGGTACCCGGTGATAAAATGAAAAGGTTGACAGAGAATCG--C--A----AGTT---TCATCATTCGA----GTGTAGT-TTTG--AGTGAATTCCCGTGTTGTA-G------AGCATTTGCACATTAGTTAATTAATAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCGC-A-A-A---AACACTAGATAATTAGGTTTGAACT--TACCTTATTG-ACAAAAGTCAT-GC-TGAA--TTTT--G----GTAT-AA--A---T-TTTATCA-CTTTAGGGCAATATCCGGTGCACGTTGTACCAgaga
gi|4 : taCAATCCCCAGTACATCAAAATG----------CAATACCCA-GTTTA-AC-----------TTTTGTGAGAATACCCAGTACACAAGCGATTTT-----TAA---------------GGTCACTTTATTGCAAACAATACTGAAATTTAGCTTAC-TTATTCTA------AGTGTCTCACCAAATACATAT-GTCC--ATTCAA------TAATTTCGTAACATAGCAATAATA----GAGAACAATATTGAGCCACATAAGCACATAACACC-GGTTAACAAATGCTAAGATTGTCAGCGAATCG--C--A----ATTT---TCATCATTTCA----GCACAG--TTTA--AGGCATTTCACGTGTTGTA-G------AGCATTTA-AAATT-GTTG-----TAATCACAT--AAATCGTT---T-ATGT--T-ATTATCAC-A-A-AAT-AACAGTAGATAGTTGGGTTCGATAT--TACCTTGTTG-AAAAAAATCAT-TT-AGAA--TTTTTGG----GAAA-AA--A---A-CGTATCA-CTTAAGAACAATA
gi|6 : cccGCAATCCTCAGAACAACCAAATG----------CAACACCCT-GT--ACAATTTTTGTGAGAACAATTTC-AATACCCAGTACACTGCTAACTTTCATTTTGGTC--TTATT--TCTCGGACATTCCATTACTTACAACACTGATGTGTGG---------TTCTA------TATGTCTAACTAAATGAAT-CTGTTT--ATTCAG------ATGTTTCTCAACATAGCAAAAA------TGAGATGATGTTGAGTAAAATGTGCACATGACAACCGTTTATCAAATGACAAAGTTGGCAGTAAATCG--C--A----ATTT---TCATCATTACA----GCATAGT-TATG--AGTCATTTCACATGTTGAA-G------AGCATTTACACATGAGTTATTTATTTATCACAT--GAAGCATT---C-ATGT--T-G---------------------TAGATAAATGGGTTTGAATTTATATCTTGTTG-ACTTAAATCAT-TT-GGAA--TTTT--A----GAAATAA--A---gtcacacacacatatttacc
gi|7 : aattCAATTTTCATTTTAGTC--ATATT--TCTCGGCCATTTTATTAGATACAACCCTGAAATTTGGCATAC-TTGTTCTA------TGTGTCTACCTTACAAAAT-A-ATTT-GATTCAC------AATTTTAACAACATGCCAAAAA------TAAGATGATATTGAGTAAAATGTATACATGGCACCCAGTGATAAATTGATAAGGATGACAGAGAA--------------GTT---TCATCATTCCA----GTATAGTATTTG--AGTGATTTTCCATGTTG---G------AGCATTTGCACATCAGTTACTTATTAATCACAT--AGATAGTT---TTATGT--T-GTAGTTAC-A-A-A---AACATTAGAT-------------CT--TACCTTGTTG-ACAA--GTCAT-GC-TGAA--TTTG--A----GAAA-AA--A---T-CTTATCA-CTTTAGGGCAATAac
gi|8 : ataTATATATGATGCGGAAGTTCTTCACAC-TTGTTCTACATGCATGTGTCT---TTAC---AT-C-ATAT-GATCCAATCATGTAGTTTTCATGACCTCTCAGAAA-A--------A-GATATTGAATAAAATGTAATTGTGTCA-CCATTTTTCAAGTGGTATGGTTGAC----AATCGATC--AACTTACTT---TCATCATGTCA----ATACA-T-AT--------ATTTCATGTATTTTA-T------AGAATTCACACATCAGATACTAATTAGTCGCCT--A---AGTTTTGT-ATGC--T-GTGGCGGG-A-ATA---AACAGTAAGTCATTAGATTTCAACC--TTCACTGCTGAACAAAA--CATAAC-AGGA--TTTT--------TAA-AATTT---T-CTTACCATCTTTA-GGCAATATCTTATGCACGTTGTAC
gi|9 : AACTGTTTTGCACACTTCAATGCATGTTAAACTGGTGTTTTT--TC----ATATTATCGCAACA--------AAA---AATATTCATCATTGACACAATACTCAGTGC-------------AC---TTAATACAGA-AT--ACAA-----------ATAAATGT-AAAACACCGCACACCGCCCTCGTTCGTTTCA-TCAAC-ATT--TACTAGTCATTTCAATGAATACGATTCTGAAATGTTGCCCAG-TTTCTCTT------TGTGTTT--C------AAT-C-ATCCTG--CCAG------AAA-TTCA----ATG------A-A----TGA---------------AATGGGCTCATGACACCC-ATT-TC------TGAAGTTGACATTTAAT------------ATTTCCATCACCATTTCAAGAGGTA-AGC-TTT---AG----TTAACGTGTTTCA-G------AGCAATAACACATCAGaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGTCGAGGTGGTAACATGAGTACATTGTGATTCGAAAATAAAAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAAGTAAGTGCGATATTAGCGAGCCCTTATCAGTTGCCAATATTCTTGTATTTACCAAGTAAGTTTTCAAAGCAGTTAAAATTAGTTTGTTAATCCTGCTCGCGATCAAGTTTCTTTTTATCTGTCACTATTTCACTAAATGCACTCAGCAAAAAAGGGCAATCATACTTTCTGTATTTTTTTGTATTTCAAATATATCGTATAGAAGGTTTTGAGTAGGGAGCGGTATTAAACATCACATAAAAACGAAAGCTATTCTTCCAAACATCACAA
Alignments
lowQualScore : 1111 22222222 111 2222222222 222222222222 111111 111111 22222222 1111 11111 2222222222222
lowQualScore : 1 5 1 1 4444 777 6 1 99 44444444 111 0 7777 0 0000000000 5 66 444444444444 5 2 2 66 66 6 1 2 3 2 000000 5 1 33 888 55 222222 5 0 4 33333333 0 0 0 2 2 22 1 88888 2 4444 0 7777 55 44 1 1 1 3 999999 2 4 88 0 666 3 55 3 3 3 3 44444 2 0 55 4 2 8888 8888888888888 888888 4 4
lowQualScore : . . . . .... ... . . .. ........ ... . .... . .......... . .. ............ . . . .. .. . . . . . ...... . . .. ... .. ...... . . . ........ . . . . . .. . ..... . .... . .... .. .. . . . . ...... . . .. . ... . .. . . . . ..... . . .. . . .... ............. ...... . .
lowQualScore : 0 6 7 0 2222 777 7 0 22 22222222 777 2 8888 1 1111111111 0 99 000000000000 0 2 9 11 11 4 0 4 6 8 555555 8 2 11 000 66 888888 3 1 7 66666666 7 7 9 3 5 88 4 33333 3 1111 4 7777 11 66 0 0 9 3 666666 0 5 66 4 444 6 00 6 7 6 6 22222 3 6 55 4 2 2222 0000000000000 777777 4 4
consensus : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT--G----GNAA--AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
Reference ( family-328 ) : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT--G----GNAA--AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
gi|1 : ATGCCCATGTAATTGTGACTACATAACTGTATTGCACATTTTAAAGTAAATTAAA----TGCTTTAAATCGTTAATGTTG--ACAAGA--------AAA---CATATTTACGATTGAAGCAATTCCCAGTACTGTAAAATTTGTTACAGATCAATACTCA-GT--ACAT-----------ATAAATGC-AATCTCCAGTACATCGCCAATTTTCGTTTTAGTC--CTATT--TCTCGG-CATTTCATTAGATACAACCCTGAAATTTACCTTAC-GTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAT------AATTTTAACAACATGGC-AAAA-A----TAAGACGATATTAAGTAAAATGTGCACATGGCACCCGGTGATAAAATAATAAGGTTGACAGAGAATCG--T--AAGTT----TCATCAATCCA----GTATAGC-TTTG--AGTGATTTACCGTGTTGTA-G------AGCATTTGTACATCAGTTACTTA-TAATCACAT--AGATAGTT---T-ATATGAT-GTTGTCAC-A-ATT---AACACAAGAAAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGACAT-GC-TGAATTTT--
gi|10 : ttgtcgcagtggtaacatgagtacattgtgaatataaaatggaaagagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtaaaacaagcatgatataagcgaatactagtcgccagtatcctagtattttcaacgttttcaaagcagttttttttgtgattttaaatgctgcttgcgatcagtttcctttttatcggtcactattccatccaatgcactcaacaaaacggtcagtcatactttctgtatttttgtttatatttcaaataaattgtatagaaggttttgagtaaaaagcagtattaaacattacataaaaacggaagttattcttccaaataccataatgcaagtttcacccaccacttttttcacatctgcaaagtttcaatcaattacacttactgggtgtaactgctgatatggcggacaaacagacgagcgggaagtttgcaacttcttaaaacgttctATTTCATAACATACAACCTTGAAA---GGTGT----TGTCCTG------TGTGTCTAACAAAATATAT-A-TATC-GATTCGG------AA---------CATGGCAAAA-------CAAATCGAAATTGAGTAAAATGTGAACGTGCCACCCGTTTATCAAATGATAAATTTGACAGTGAAT-------------------------CA----GCATAGT-ATTG--AGTCAATTCACGTGTTGTA-GGCCTATAGCATTTACACATCG------TATTAATCACATTCAG-CA-TT---T-ATGT--T-ATAGTCAC-ATA-ATATAACAGTAGATAATTTGGTTTGa
gi|10 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtGCAATAGCCGGTGTACGTTGTACCcaatagccggtgtacgttgtacc
gi|11 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtatttcataacatacaaccttgaaaggtgttgtcctgtgtgtctaacaaaatatatatatcgattcggaacatggcaaaacaaatcgaaattgagtaaaatgtgaacgtgccacccgtttatcaaatgataaatttgacagtgaatcagcatagtattgagtcaattcacgtgttgtaggcctatagcatttacacatcgtattaatcacattcagcatttatgttatagtcacataatataacagtagataatttggtttATACCAATGAAATTGTGACTACATAAATGTTTGGCATATTTTACCGCATATTTAA----TGCTTTTAATCTCTAATGTTG--GCAAGA--------AAAAAACATATTCAGCATTAAAGCATTTCCCAGTACAGTAAAATATGTTACAT-TTAAAAACCATTT--ACAT-----------ATAAATTC-AATACCAAACACACAGTCGCTTTTCGTTTTAGTC--CTTTTTGTTTTGGCAATTTCAT
gi|12 : tagcttactttaaacgttatAT-TTCTTCTA------TTTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AACTTTTAGAACATGGCAAAAA------TAAGACGATATTGAGTAAAATG--------------GGTTATCAAATGATAAAGTTGACAGAGAGTCG--CGCATGTT----TCACCACTCCA----GTACAGA-TTTG--AGTGATTCCCCGTGTTAAA-G------AGCATTTGCGCACCAGTAACTTATTAATCACATA-AGACAGTT---T-ATGT--T-ATAGTCAC-A-A-A---ATCACTAGATAATTAGATTTTAACT--TACTTTGTTG-ACAAaacgtgttcgatatgtctaattaaataaaaa
gi|13 : ATACCCATAAAATTGTGAC-ATATAACTGTCGAGCACATTT-AAGACAAGTTTAA----TGCGTTGTATTTCTAATTTAA--GCAAAATAAATATAAAA---CATACGCATCATTGAAACAATATCCACTACATTAAA-TAAGTTACATATCAATACTCA-GT--GCAC-----------TTAAGTTA-AATAATCAGTCCATCGCCAACTTTCGTTTCAGTT--CTATT--TCTCGGACATTTCATTACATACAACCATGAGCATTGTCTTAC-TT----TA------TGT
gi|14 : tttaaaacgttatCAAATGATAAGGTTGGCACTGAATCA--C--AATTT----TCATTATTTCA----GCATAGT-TTTTTTAGTCATTTCACGTGTTTCA-G------AGAATTTACACATCAGTTACTTA---ATCAAAT--AAGTAATT---T-ATTT--T-GTAGTTAC-A-A-A---AACAGTTAATAATTAGTTTTGAAGT--TTCATTTTTG-ACAAAAATCAT--T-TGGATTTT--T----TTTTTTAA--A---T-CTTATCA-TATTAGAGCAATATTCGTTGTACGTTGTATCA
gi|15 : T-TTTG--CTTCATTTCACATGTTTTAAG------AGCATTTACACATCCGTTATTTATTAATCACAT--AAATCCTT---T-ATGT--CAGT-GTCCC-A-A-A---AAAATAAAATGATTTGGTTTGAATT--TACc
gi|16 : ggtagatctaattatcactaccttCAT-ATATGAGTCTT--GATT-GTCA--AA--AGATT-CTAATCA-TTTTAGAGCAATGTACGGTATACGTTGTAC
gi|17 : gaaatcgggttcatatgcactgatagtgacgataactatgccaTTTT--------TAA--GA--A---TTCTTATCA-CATTAAGGCTATATCCGGTGTATGTTGTACCA
gi|18 : tttatgattccgtttttcaataattattcTCGT-GT-TGAATTTG--A----GAAA--AA--A---T-CTTATCA-CTTATGGGCAATATCCGGTTTATGTTGTACCcac
gi|19 : tAATTTT--GCATCGGAA--AT--T---T-CTTATCA-TTTTAAGGCAATATCCGATGTACGTTGCACC
gi|2 : ATGCCCATGCAATTATGACGACATAACTGTTTTGCACATTTTAAAGCAAGTGAAA----TGCTTTTAATCGCTGATAATG--GCAAGC--------AAA---AATATTTACCACTGAAGCAATCCCCAGTACCGGTAAATCTGTTACAGATCAATACCCA-GT--ACAC-----------ATAAATGC-AATGCCCAGTACACTGCTGATTTT-GTTTTAGTC--CTATT--TCTCGGCCATTTCATTAGATACAACCCTGATATTTGGCATAC-TTGTTCTA------TGTGTCTAACTT
gi|2 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatAACTTGGCAAAA--A----TAAGACGATATTGAGTAAAATGTGCACATTGCACACGGTTATCAAATGACAAGGTTGACAAAGAATCG--C--AAGTT----TCATCATTCCA----GTATAGT-TTTG--AGTGATGTCCCGTGTTGTA-G------AGCATTTGCACATCAGTTACGTATCAATCACAT--AGATAGTT---T-ATGT--T-GCAGTCACAA-A-A---AACACTAGATAATTAGATTTTAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTggcaaaaataagacgatattgagtaaaatgtgcacattgcacacggttatcaaatgacaaggttgacaaagaatcgcaagtttcatcattccagtatagttttgagtgatgtcccgtgttgtagagcatttgcacatcagttacgtatcaatcacatagatagtttatgttgcagtcacaaaaaacactagataattagattttaacttaccttgttgacaaaagtcatgttgaatttgaga
gi|3 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatatgcccatgcaattatgacgacataactgttttgcacattttaaagcaagtgaaatgcttttaatcgctgataatggcaagcaaaaatatttaccactgaagcaatccccagtaccggtaaatctgttacagatcaatacccagtacacataaatgcaatgcccagtacactgctgattttgttttagtcctatttctcggccatttcattagatacaaccctgatatttggcatacttgttctatgtgtctATGCCCATGTAATTGTGAATACATAACTGTTTTACACATTTTAAAGCAAGTTAAA----TGCTTTCA-TCGCTAATTTTG--GCAAGA--------AAA---CATATTTACAATTGAAGCAATCCCCAGTACAATAAAATTTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AGTCCCTACTAAACTGACGATTTTTGTTTTAGTC--CTATG--TCTCGGTCATTTCATTAGATACAACCCTGAAATTGAGCGTACCTTGTTCCA------TGTGTCTTATTTACTAAAT-T-GTTC-GATTCAG------AATTTTCACAACATGGCAAAAA-AAAAAGAAGACGATATTGAGTAAAATGTGCACATGGTACCCGGTGATAAAATGAAAAGGTTGACAGAGAATCG--C--AAGTT----TCATCATTCGA----GTGTAGT-TTTG--AGTGAATTCCCGTGTTGTA-G------AGCATTTGCACATTAGTTAATTAATAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCGC-A-A-A---AACACTAGATAATTAGGTTTGAACT--TACCTTATTG-ACAAAAGTCAT-GC-TGAATTTT--G----GTAT--AA--A---T-TTTATCA-CTTTAGGGCAATATCCGGTGCACGTTGTACCAgaga
gi|4 : taCAATCCCCAGTACATCAAAATG----------CAATACCCA-GTTTA-AC-----------TTTTGTGAGAATACCCAGTACACAAGCGATTTT-----TAA---------------GGTCACTTTATTGCAAACAATACTGAAATTTAGCTTAC-TTATTCTA------AGTGTCTCACCAAATACATAT-GTCC--ATTCAA------TAATTTCGTAACATAGCAATAATA----GAGAACAATATTGAGCCACATAAGCACATAACACC-GGTTAACAAATGCTAAGATTGTCAGCGAATCG--C--AATTT----TCATCATTTCA----GCACAG--TTTA--AGGCATTTCACGTGTTGTA-G------AGCATTTA-AAATT-GTTG-----TAATCACAT--AAATCGTT---T-ATGT--T-ATTATCAC-A-A-AAT-AACAGTAGATAGTTGGGTTCGATAT--TACCTTGTTG-AAAAAAATCAT-TT-AGAATTTTTGG----GAAA--AA--A---A-CGTATCA-CTTAAGAACAATA
gi|6 : cccGCAATCCTCAGAACAACCAAATG----------CAACACCCT-GT--ACAATTTTTGTGAGAACAATTTC-AATACCCAGTACACTGCTAACTTTCATTTTGGTC--TTATT--TCTCGGACATTCCATTACTTACAACACTGATGTGTGG---------TTCTA------TATGTCTAACTAAATGAAT-CTGTTT--ATTCAG------ATGTTTCTCAACATAGCAAAAA------TGAGATGATGTTGAGTAAAATGTGCACATGACAACCGTTTATCAAATGACAAAGTTGGCAGTAAATCG--C--AATTT----TCATCATTACA----GCATAGT-TATG--AGTCATTTCACATGTTGAA-G------AGCATTTACACATGAGTTATTTATTTATCACAT--GAAGCATT---C-ATGT--T-G---------------------TAGATAAATGGGTTTGAATTTATATCTTGTTG-ACTTAAATCAT-TT-GGAATTTT--A----GAAAT-AA--A---gtcacacacacatatttacc
gi|7 : aattCAATTTTCATTTTAGTC--ATATT--TCTCGGCCATTTTATTAGATACAACCCTGAAATTTGGCATAC-TTGTTCTA------TGTGTCTACCTTACAAAAT-A-ATTT-GATTCAC------AATTTTAACAACATGCCAAAAA------TAAGATGATATTGAGTAAAATGTATACATGGCACCCAGTGATAAATTGATAAGGATGACAGAGAA----------GTT----TCATCATTCCA----GTATAGTATTTG--AGTGATTTTCCATGTTG---G------AGCATTTGCACATCAGTTACTTATTAATCACAT--AGATAGTT---TTATGT--T-GTAGTTAC-A-A-A---AACATTAGAT-------------CT--TACCTTGTTG-ACAA--GTCAT-GC-TGAATTTG--A----GAAA--AA--A---T-CTTATCA-CTTTAGGGCAATAac
gi|8 : ataTATATATGATGCGGAAGTTCTTCACAC-TTGTTCTACATGCATGTGTCT---TTAC---AT-C-ATAT-GATCCAATCATGTAGTTTTCATGACCTCTCAGAAA-A--------A-GATATTGAATAAAATGTAATTGTGTCACC-ATTTTTCAAGTGGTATGGTTGACA----ATCGATC--AACTTACTTTCATCATGTCA----ATACA-----TA-----TATTTCATGTATTTTA-T------AGAATTCACACATCAGATACTAATTAGTCGCCT--A---AGTTTTGT-ATGC--T-GTGGCGGG-A-ATA---AACAGTAAGTCATTAGATTTCAACC--TTCACTGCTGAACAAAA--CATAAC-AGGATTTT--------TAA--AATTT---T-CTTACCATCTTTA-GGCAATATCTTATGCACGTTGTAC
gi|9 : AACTGTTTTGCACACTTCAATGCATGTTAAACTGGTGTTTTT--TC----ATATTATCGCAACA--------AAA---AATATTCATCATTGACACAATACTCAGTGC-------------AC---TTAATACAGA-AT--ACAA-----------ATAAATGT-AAAACACCGCACACCGCCCTCGTTCGTTTCA-TCAAC-ATT--TACTAGTCATTTCAATGAATACGATTCTGAAATGTTGCCCAG-TTTCTCTT------TGTGTTT--C------AAT-C-ATCCTG--CCAG------AAA-TTCA----ATG------A-A----TGA---------------AATGGGCTCATGACACCC-ATT-TC------TGAAGTTGACATTTAAT--------ATTTCCA-TCACCATTTCAAGAGGTA-AGC-TTT---AGTTA----ACGTGTTTCA-G------AGCAATAACACATCAGaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGTCGAGGTGGTAACATGAGTACATTGTGATTCGAAAATAAAAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAAGTAAGTGCGATATTAGCGAGCCCTTATCAGTTGCCAATATTCTTGTATTTACCAAGTAAGTTTTCAAAGCAGTTAAAATTAGTTTGTTAATCCTGCTCGCGATCAAGTTTCTTTTTATCTGTCACTATTTCACTAAATGCACTCAGCAAAAAAGGGCAATCATACTTTCTGTATTTTTTTGTATTTCAAATATATCGTATAGAAGGTTTTGAGTAGGGAGCGGTATTAAACATCACATAAAAACGAAAGCTATTCTTCCAAACATCACAA
Alignments
lowQualScore : 1111 22222222 111 2222222222 222222222222 111111 111111 22222222 1111 11111 2222222222222
lowQualScore : 1 5 1 1 4444 777 6 1 99 44444444 111 0 7777 0 0000000000 5 66 444444444444 5 2 2 66 66 6 1 2 3 2 000000 5 1 33 888 55 222222 5 0 4 33333333 0 0 0 2 2 22 1 88888 2 4444 0 7777 55 44 1 1 1 3 999999 2 4 88 0 666 3 55 3 3 3 3 44444 2 0 55 4 2 8888 8888888888888 888888 4 4
lowQualScore : . . . . .... ... . . .. ........ ... . .... . .......... . .. ............ . . . .. .. . . . . . ...... . . .. ... .. ...... . . . ........ . . . . . .. . ..... . .... . .... .. .. . . . . ...... . . .. . ... . .. . . . . ..... . . .. . . .... ............. ...... . .
lowQualScore : 0 6 7 0 2222 777 7 0 22 22222222 777 2 8888 1 1111111111 0 99 000000000000 0 2 9 11 11 4 0 4 6 8 555555 8 2 11 000 66 888888 3 1 7 66666666 7 7 9 3 5 88 4 33333 3 1111 4 7777 11 66 0 0 9 3 666666 0 5 66 4 444 6 00 6 7 6 6 22222 3 6 55 4 2 2222 0000000000000 777777 4 4
consensus : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT--G----GNAA--AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
Reference ( family-328 ) : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT--G----GNAA--AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
gi|1 : ATGCCCATGTAATTGTGACTACATAACTGTATTGCACATTTTAAAGTAAATTAAA----TGCTTTAAATCGTTAATGTTG--ACAAGA--------AAA---CATATTTACGATTGAAGCAATTCCCAGTACTGTAAAATTTGTTACAGATCAATACTCA-GT--ACAT-----------ATAAATGC-AATCTCCAGTACATCGCCAATTTTCGTTTTAGTC--CTATT--TCTCGG-CATTTCATTAGATACAACCCTGAAATTTACCTTAC-GTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAT------AATTTTAACAACATGGC-AAAA-A----TAAGACGATATTAAGTAAAATGTGCACATGGCACCCGGTGATAAAATAATAAGGTTGACAGAGAATCG--T--AAGTT----TCATCAATCCA----GTATAGC-TTTG--AGTGATTTACCGTGTTGTA-G------AGCATTTGTACATCAGTTACTTA-TAATCACAT--AGATAGTT---T-ATATGAT-GTTGTCAC-A-ATT---AACACAAGAAAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGACAT-GC-TGAATTTT--
gi|10 : ttgtcgcagtggtaacatgagtacattgtgaatataaaatggaaagagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtaaaacaagcatgatataagcgaatactagtcgccagtatcctagtattttcaacgttttcaaagcagttttttttgtgattttaaatgctgcttgcgatcagtttcctttttatcggtcactattccatccaatgcactcaacaaaacggtcagtcatactttctgtatttttgtttatatttcaaataaattgtatagaaggttttgagtaaaaagcagtattaaacattacataaaaacggaagttattcttccaaataccataatgcaagtttcacccaccacttttttcacatctgcaaagtttcaatcaattacacttactgggtgtaactgctgatatggcggacaaacagacgagcgggaagtttgcaacttcttaaaacgttctATTTCATAACATACAACCTTGAAA---GGTGT----TGTCCTG------TGTGTCTAACAAAATATAT-A-TATC-GATTCGG------AA---------CATGGCAAAA-------CAAATCGAAATTGAGTAAAATGTGAACGTGCCACCCGTTTATCAAATGATAAATTTGACAGTGAAT-------------------------CA----GCATAGT-ATTG--AGTCAATTCACGTGTTGTA-GGCCTATAGCATTTACACATCG------TATTAATCACATTCAG-CA-TT---T-ATGT--T-ATAGTCAC-ATA-ATATAACAGTAGATAATTTGGTTTGa
gi|10 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtGCAATAGCCGGTGTACGTTGTACCcaatagccggtgtacgttgtacc
gi|11 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtatttcataacatacaaccttgaaaggtgttgtcctgtgtgtctaacaaaatatatatatcgattcggaacatggcaaaacaaatcgaaattgagtaaaatgtgaacgtgccacccgtttatcaaatgataaatttgacagtgaatcagcatagtattgagtcaattcacgtgttgtaggcctatagcatttacacatcgtattaatcacattcagcatttatgttatagtcacataatataacagtagataatttggtttATACCAATGAAATTGTGACTACATAAATGTTTGGCATATTTTACCGCATATTTAA----TGCTTTTAATCTCTAATGTTG--GCAAGA--------AAAAAACATATTCAGCATTAAAGCATTTCCCAGTACAGTAAAATATGTTACAT-TTAAAAACCATTT--ACAT-----------ATAAATTC-AATACCAAACACACAGTCGCTTTTCGTTTTAGTC--CTTTTTGTTTTGGCAATTTCAT
gi|12 : tagcttactttaaacgttatAT-TTCTTCTA------TTTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AACTTTTAGAACATGGCAAAAA------TAAGACGATATTGAGTAAAATG--------------GGTTATCAAATGATAAAGTTGACAGAGAGTCG--CGCATGTT----TCACCACTCCA----GTACAGA-TTTG--AGTGATTCCCCGTGTTAAA-G------AGCATTTGCGCACCAGTAACTTATTAATCACATA-AGACAGTT---T-ATGT--T-ATAGTCAC-A-A-A---ATCACTAGATAATTAGATTTTAACT--TACTTTGTTG-ACAAaacgtgttcgatatgtctaattaaataaaaa
gi|13 : ATACCCATAAAATTGTGAC-ATATAACTGTCGAGCACATTT-AAGACAAGTTTAA----TGCGTTGTATTTCTAATTTAA--GCAAAATAAATATAAAA---CATACGCATCATTGAAACAATATCCACTACATTAAA-TAAGTTACATATCAATACTCA-GT--GCAC-----------TTAAGTTA-AATAATCAGTCCATCGCCAACTTTCGTTTCAGTT--CTATT--TCTCGGACATTTCATTACATACAACCATGAGCATTGTCTTAC-TT----TA------TGT
gi|14 : tttaaaacgttatCAAATGATAAGGTTGGCACTGAATCA--C--AATTT----TCATTATTTCA----GCATAGT-TTTTTTAGTCATTTCACGTGTTTCA-G------AGAATTTACACATCAGTTACTTA---ATCAAAT--AAGTAATT---T-ATTT--T-GTAGTTAC-A-A-A---AACAGTTAATAATTAGTTTTGAAGT--TTCATTTTTG-ACAAAAATCAT--T-TGGATTTT--T----TTTTTTAA--A---T-CTTATCA-TATTAGAGCAATATTCGTTGTACGTTGTATCA
gi|15 : T-TTTG--CTTCATTTCACATGTTTTAAG------AGCATTTACACATCCGTTATTTATTAATCACAT--AAATCCTT---T-ATGT--CAGT-GTCCC-A-A-A---AAAATAAAATGATTTGGTTTGAATT--TACc
gi|16 : ggtagatctaattatcactaccttCAT-ATATGAGTCTT--GATT-GTCA--AA--AGATT-CTAATCA-TTTTAGAGCAATGTACGGTATACGTTGTAC
gi|17 : gaaatcgggttcatatgcactgatagtgacgataactatgccaTTTT--------TAA--GA--A---TTCTTATCA-CATTAAGGCTATATCCGGTGTATGTTGTACCA
gi|18 : tttatgattccgtttttcaataattattcTCGT-GT-TGAATTTG--A----GAAA--AA--A---T-CTTATCA-CTTATGGGCAATATCCGGTTTATGTTGTACCcac
gi|19 : tAATTTT--GCATCGGAA--AT--T---T-CTTATCA-TTTTAAGGCAATATCCGATGTACGTTGCACC
gi|2 : ATGCCCATGCAATTATGACGACATAACTGTTTTGCACATTTTAAAGCAAGTGAAA----TGCTTTTAATCGCTGATAATG--GCAAGC--------AAA---AATATTTACCACTGAAGCAATCCCCAGTACCGGTAAATCTGTTACAGATCAATACCCA-GT--ACAC-----------ATAAATGC-AATGCCCAGTACACTGCTGATTTT-GTTTTAGTC--CTATT--TCTCGGCCATTTCATTAGATACAACCCTGATATTTGGCATAC-TTGTTCTA------TGTGTCTAACTT
gi|2 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatAACTTGGCAAAA--A----TAAGACGATATTGAGTAAAATGTGCACATTGCACACGGTTATCAAATGACAAGGTTGACAAAGAATCG--C--AAGTT----TCATCATTCCA----GTATAGT-TTTG--AGTGATGTCCCGTGTTGTA-G------AGCATTTGCACATCAGTTACGTATCAATCACAT--AGATAGTT---T-ATGT--T-GCAGTCACAA-A-A---AACACTAGATAATTAGATTTTAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTggcaaaaataagacgatattgagtaaaatgtgcacattgcacacggttatcaaatgacaaggttgacaaagaatcgcaagtttcatcattccagtatagttttgagtgatgtcccgtgttgtagagcatttgcacatcagttacgtatcaatcacatagatagtttatgttgcagtcacaaaaaacactagataattagattttaacttaccttgttgacaaaagtcatgttgaatttgaga
gi|3 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatatgcccatgcaattatgacgacataactgttttgcacattttaaagcaagtgaaatgcttttaatcgctgataatggcaagcaaaaatatttaccactgaagcaatccccagtaccggtaaatctgttacagatcaatacccagtacacataaatgcaatgcccagtacactgctgattttgttttagtcctatttctcggccatttcattagatacaaccctgatatttggcatacttgttctatgtgtctATGCCCATGTAATTGTGAATACATAACTGTTTTACACATTTTAAAGCAAGTTAAA----TGCTTTCA-TCGCTAATTTTG--GCAAGA--------AAA---CATATTTACAATTGAAGCAATCCCCAGTACAATAAAATTTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AGTCCCTACTAAACTGACGATTTTTGTTTTAGTC--CTATG--TCTCGGTCATTTCATTAGATACAACCCTGAAATTGAGCGTACCTTGTTCCA------TGTGTCTTATTTACTAAAT-T-GTTC-GATTCAG------AATTTTCACAACATGGCAAAAA-AAAAAGAAGACGATATTGAGTAAAATGTGCACATGGTACCCGGTGATAAAATGAAAAGGTTGACAGAGAATCG--C--AAGTT----TCATCATTCGA----GTGTAGT-TTTG--AGTGAATTCCCGTGTTGTA-G------AGCATTTGCACATTAGTTAATTAATAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCGC-A-A-A---AACACTAGATAATTAGGTTTGAACT--TACCTTATTG-ACAAAAGTCAT-GC-TGAATTTT--G----GTAT--AA--A---T-TTTATCA-CTTTAGGGCAATATCCGGTGCACGTTGTACCAgaga
gi|4 : taCAATCCCCAGTACATCAAAATG----------CAATACCCA-GTTTA-AC-----------TTTTGTGAGAATACCCAGTACACAAGCGATTTT-----TAA---------------GGTCACTTTATTGCAAACAATACTGAAATTTAGCTTAC-TTATTCTA------AGTGTCTCACCAAATACATAT-GTCC--ATTCAA------TAATTTCGTAACATAGCAATAATA----GAGAACAATATTGAGCCACATAAGCACATAACACC-GGTTAACAAATGCTAAGATTGTCAGCGAATCG--C--AATTT----TCATCATTTCA----GCACAG--TTTA--AGGCATTTCACGTGTTGTA-G------AGCATTTA-AAATT-GTTG-----TAATCACAT--AAATCGTT---T-ATGT--T-ATTATCAC-A-A-AAT-AACAGTAGATAGTTGGGTTCGATAT--TACCTTGTTG-AAAAAAATCAT-TT-AGAATTTTTGG----GAAA--AA--A---A-CGTATCA-CTTAAGAACAATA
gi|6 : cccGCAATCCTCAGAACAACCAAATG----------CAACACCCT-GT--ACAATTTTTGTGAGAACAATTTC-AATACCCAGTACACTGCTAACTTTCATTTTGGTC--TTATT--TCTCGGACATTCCATTACTTACAACACTGATGTGTGG---------TTCTA------TATGTCTAACTAAATGAAT-CTGTTT--ATTCAG------ATGTTTCTCAACATAGCAAAAA------TGAGATGATGTTGAGTAAAATGTGCACATGACAACCGTTTATCAAATGACAAAGTTGGCAGTAAATCG--C--AATTT----TCATCATTACA----GCATAGT-TATG--AGTCATTTCACATGTTGAA-G------AGCATTTACACATGAGTTATTTATTTATCACAT--GAAGCATT---C-ATGT--T-G---------------------TAGATAAATGGGTTTGAATTTATATCTTGTTG-ACTTAAATCAT-TT-GGAATTTT--A----GAAAT-AA--A---gtcacacacacatatttacc
gi|7 : aattCAATTTTCATTTTAGTC--ATATT--TCTCGGCCATTTTATTAGATACAACCCTGAAATTTGGCATAC-TTGTTCTA------TGTGTCTACCTTACAAAAT-A-ATTT-GATTCAC------AATTTTAACAACATGCCAAAAA------TAAGATGATATTGAGTAAAATGTATACATGGCACCCAGTGATAAATTGATAAGGATGACAGAGAA----------GTT----TCATCATTCCA----GTATAGTATTTG--AGTGATTTTCCATGTTG---G------AGCATTTGCACATCAGTTACTTATTAATCACAT--AGATAGTT---TTATGT--T-GTAGTTAC-A-A-A---AACATTAGAT-------------CT--TACCTTGTTG-ACAA--GTCAT-GC-TGAATTTG--A----GAAA--AA--A---T-CTTATCA-CTTTAGGGCAATAac
gi|8 : ataTATATATGATGCGGAAGTTCTTCACAC-TTGTTCTACATGCATGTGTCT---TTAC---AT-C-ATAT-GATCCAATCATGTAGTTTTCATGACCTCTCAGAAA-A--------A-GATATTGAATAAAATGTAATTGTGTCACC-ATTTTTCAAGTGGTATGGTTGACA----ATCGATC--AACTTACTTTCATCATGTCA----ATACA-----TA-----TATTTCATGTATTTTA-T------AGAATTCACACATCAGATACTAATTAGTCGCCT--A---AGTTTTGT-ATGC--T-GTGGCGGG-A-ATA---AACAGTAAGTCATTAGATTTCAACC--TTCACTGCTGAACAAAA--CATAAC-AGGATTTT--------TAA--AATTT---T-CTTACCATCTTTA-GGCAATATCTTATGCACGTTGTAC
gi|9 : AACTGTTTTGCACACTTCAATGCATGTTAAACTGGTGTTTTT--TC----ATATTATCGCAACA--------AAA---AATATTCATCATTGACACAATACTCAGTGC-------------AC---TTAATACAGA-AT--ACAA-----------ATAAATGT-AAAACACCGCACACCGCCCTCGTTCGTTTCA-TCAAC-ATT--TACTAGTCATTTCAATGAATACGATTCTGAAATGTTGCCCAG-TTTCTCTT------TGTGTTT--C------AAT-C-ATCCTG--CCAG------AAA-TTCA----ATG------A-A----TGA---------------AATGGGCTCATGACACCC-ATT-TC------TGAAGTTGACATTTAAT--------ATTTCCA-TCACCATTTCAAGAGGTA-AGC-TTT---AGTTA----ACGTGTTTCA-G------AGCAATAACACATCAGaa
blockSeqs : A T T C CTGG TAA T G TC TAAATATA AAA AGTA AAGTTACATA T TT ATTTTTGTGAGA G A C AA TG C C G C G CATGCA A A AT AT TG TCATGT C G AAAAAAG C C GT C CGC G ACTT AGAG TA TT C A T A GCCTAT C T TC TTG T . A A A T ATAT G TA A A ATA GCATCGGAA AGAT T T
blockSeqs : A G T G . GTA T T . . . ATTA CTGTTACAGA . . T . C C . . A C T . C . A T CT CT G . T C ATAG G C GA C ATC T CCA . T . G C A . . C T A . . . . A . . AAT C . . G AAC GATTGTCA TTT . .
blockSeqs : C T T A . TAA G A . . . CGGT TTGTTACATA . . C . T T . . C G A . G . A T CT A G . A T AAT G C CT C C G . . A . C A C . . T T . . . . . A . . TA G . . G GT TGGGAAA A . .
blockSeqs : T . C A . CA G T . . . AATA ATGTTACAT . . C . T C . . T G G . G . T T AT C G . G C AT A C AA C C G . . T . C A T . . C T . . . . . A . . A T . . A GT AGAAAT A . .
blockSeqs : . T . T . A . . . ATCA AC . . C . A C . . T C T . A . C A AT T G . T C AT A C GA C C T . . T . G C T . . A A . . . . . A . . A C . . A GC AGAAA T . .
blockSeqs : AACC G . . C . T C . . A C A . G . A A CA A G . T T AT G C GC C C T . . T . G C T . . T T . . . . . T . . A C . . G TT GGTAT A . .
blockSeqs : . G . . A . C . . . C G A . G . A T C C . . A . AT T . GT C C G . . T . C A T . . C T . . . . . A . . A G . . . TT AGAAA A . .
blockSeqs : . . . T T C . T . . T . C . . . . AA A . GA . . C . . T . C A A . . C T . . . . . G . . A T . . GC TAA A . .
blockSeqs : A . . . . . . C . . TT . . T . . C . G C T . . . . . . . . . . . . A G . T TAA A
blockSeqs : . . . . . . . . . . . T A C . . . . . . . . . . . . . .
blockSeqs : . . T A . . .
blockSeqCons : AT****** ** A**** GGAAA********
originalCons : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-A----TAAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT--G----GNAA--AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
finalCons : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAAT------AAGACGATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-AA----AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTTGGAAA--------AA--A---T-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGTCGAGGTGGTAACATGAGTACATTGTGATTCGAAAATAAAAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAAGTAAGTGCGATATTAGCGAGCCCTTATCAGTTGCCAATATTCTTGTATTTACCAAGTAAGTTTTCAAAGCAGTTAAAATTAGTTTGTTAATCCTGCTCGCGATCAAGTTTCTTTTTATCTGTCACTATTTCACTAAATGCACTCAGCAAAAAAGGGCAATCATACTTTCTGTATTTTTTTGTATTTCAAATATATCGTATAGAAGGTTTTGAGTAGGGAGCGGTATTAAACATCACATAAAAACGAAAGCTATTCTTCCAAACATCACAA
Alignments
lowQualScore : 1111 22222222 111 2222222222 222222222222 111111 1111111 111111 1111 11111 333333333333333333
lowQualScore : 1 5 1 1 4444 777 6 1 99 44444444 111 0 7777 0 0000000000 5 66 444444444444 5 2 2 66 66 0 1 2 3 2 000000 5 1 44 888 55 2222222 4 44 0 222222 4 999999 3 2 777 22 1 88888 2 4444 0 7777 55 44 1 1 1 3 999999 2 4 88 0 666 3 55 3 3 3 3 44444 2 0 55 4 2 8888 888888888888888888 4 4 4
lowQualScore : . . . . .... ... . . .. ........ ... . .... . .......... . .. ............ . . . .. .. . . . . . ...... . . .. ... .. ....... . .. . ...... . ...... . . ... .. . ..... . .... . .... .. .. . . . . ...... . . .. . ... . .. . . . . ..... . . .. . . .... .................. . . .
lowQualScore : 0 6 7 0 2222 777 7 0 22 22222222 777 2 8888 1 1111111111 0 99 000000000000 0 2 9 11 11 9 0 4 6 8 555555 8 2 99 777 66 2222222 9 88 7 222222 0 999999 3 3 333 88 4 33333 3 1111 4 7777 11 66 0 0 9 3 666666 0 5 66 4 444 6 00 6 7 6 6 22222 3 6 55 4 2 2222 333333333333333333 0 4 4
consensus : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-----TA-AGA-CG---ATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT-------G----G-----AAA-AAAT-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
Reference ( family-328 ) : NNATGCCCATGNAATTGTGACTACATAACTGTTTTGCACATTTTAANGCAAGTTAAA----TGCTTTNAATCGCTAATNTTG--GCAAGA--------AAA---CATATTCACCATTGAAGCAATCCCCAGTACAGTAAAATNTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AATACCCAGTACACCGCCGATTTTCGTTTTAGTC--CTATT--TCTCGGCCATTTCATTANATACAACCCTGAAATTTGGCNTAC-TTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AANTTTCACAACATGGCAAAAA-----TA-AGA-CG---ATATTGAGTAAAATGTGCACATGGCACCCGGTTATCAAATGATAAGGTTGACAGNGAATCG--C--AANTT----TCATCATTCCA----GTATAGT-TTTG--AGTNATTTCACGTGTTGTA-G------AGCATTTACACATCAGTTACTTATTAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCAC-A-A-A---AACANTAGATAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTTT-------G----G-----AAA-AAAT-CTTATCA-CTTTAGGGCAATATCCGGTGTACGTTGTACCA
gi|1 : ATGCCCATGTAATTGTGACTACATAACTGTATTGCACATTTTAAAGTAAATTAAA----TGCTTTAAATCGTTAATGTTG--ACAAGA--------AAA---CATATTTACGATTGAAGCAATTCCCAGTACTGTAAAATTTGTTACAGATCAATACTCA-GT--ACAT-----------ATAAATGC-AATCTCCAGTACATCGCCAATTTTCGTTTTAGTC--CTATT--TCTCGGC-ATTTCATTAGATACAACCCTGAAATTTACCTTAC-GTGTTCTA------TGTGTCTAACTTACTAAAT-C-GTTC-GATTCAT------AATTTTAACAACATGGCAAAAA-----TA-AGA-CG---ATATTAAGTAAAATGTGCACATGGCACCCGGTGATAAAATAATAAGGTTGACAGAGAATCG--T--AAGTT----TCATCAATCCA----GTATAGC-TTTG--AGTGATTTACCGTGTTGTA-G------AGCATTTGTACATCAGTTACTTA-TAATCACAT--AGATAGTT---T-ATATGAT-GTTGTCAC-A-ATT---AACACAAGAAAATTAGGTTTGAACT--TACCTTGTTG-ACAAAAGACAT-GC-TGAATTTT-------
gi|10 : ttgtcgcagtggtaacatgagtacattgtgaatataaaatggaaagagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtaaaacaagcatgatataagcgaatactagtcgccagtatcctagtattttcaacgttttcaaagcagttttttttgtgattttaaatgctgcttgcgatcagtttcctttttatcggtcactattccatccaatgcactcaacaaaacggtcagtcatactttctgtatttttgtttatatttcaaataaattgtatagaaggttttgagtaaaaagcagtattaaacattacataaaaacggaagttattcttccaaataccataatgcaagtttcacccaccacttttttcacatctgcaaagtttcaatcaattacacttactgggtgtaactgctgatatggcggacaaacagacgagcgggaagtttgcaacttcttaaaacgttctATTTCATAACATACAACCTTGAAA---GGTGT----TGTCCTG------TGTGTCTAACAAAATATAT-A-TATC-GATTCGG------AA---------CATGGCAAAA------CA-AAT-CG---AAATTGAGTAAAATGTGAACGTGCCACCCGTTTATCAAATGATAAATTTGACAGTGAAT-------------------------CA----GCATAGT-ATTG--AGTCAATTCACGTGTTGTA-GGCCTATAGCATTTACACATCG------TATTAATCACATTCAG-CA-TT---T-ATGT--T-ATAGTCAC-ATA-ATATAACAGTAGATAATTTGGTTTGa
gi|10 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtGCAATAGCCGGTGTACGTTGTACCcaatagccggtgtacgttgtacc
gi|11 : aactgacggcttaaaaacgcttctttgaaattgtcgtattctgtatttcataacatacaaccttgaaaggtgttgtcctgtgtgtctaacaaaatatatatatcgattcggaacatggcaaaacaaatcgaaattgagtaaaatgtgaacgtgccacccgtttatcaaatgataaatttgacagtgaatcagcatagtattgagtcaattcacgtgttgtaggcctatagcatttacacatcgtattaatcacattcagcatttatgttatagtcacataatataacagtagataatttggtttATACCAATGAAATTGTGACTACATAAATGTTTGGCATATTTTACCGCATATTTAA----TGCTTTTAATCTCTAATGTTG--GCAAGA--------AAAAAACATATTCAGCATTAAAGCATTTCCCAGTACAGTAAAATATGTTACAT-TTAAAAACCATTT--ACAT-----------ATAAATTC-AATACCAAACACACAGTCGCTTTTCGTTTTAGTC--CTTTTTGTTTTGGCAATTTCAT
gi|12 : tagcttactttaaacgttatAT-TTCTTCTA------TTTGTCTAACTTACTAAAT-C-GTTC-GATTCAG------AACTTTTAGAACATGGCAAAAA-----TA-AGA-CG---ATATTGAGTAAAATG--------------GGTTATCAAATGATAAAGTTGACAGAGAGTCG--CGCATGTT----TCACCACTCCA----GTACAGA-TTTG--AGTGATTCCCCGTGTTAAA-G------AGCATTTGCGCACCAGTAACTTATTAATCACATA-AGACAGTT---T-ATGT--T-ATAGTCAC-A-A-A---ATCACTAGATAATTAGATTTTAACT--TACTTTGTTG-ACAAaacgtgttcgatatgtctaattaaataaaaa
gi|13 : ATACCCATAAAATTGTGAC-ATATAACTGTCGAGCACATTT-AAGACAAGTTTAA----TGCGTTGTATTTCTAATTTAA--GCAAAATAAATATAAAA---CATACGCATCATTGAAACAATATCCACTACATTAAA-TAAGTTACATATCAATACTCA-GT--GCAC-----------TTAAGTTA-AATAATCAGTCCATCGCCAACTTTCGTTTCAGTT--CTATT--TCTCGGACATTTCATTACATACAACCATGAGCATTGTCTTAC-TT----TA------TGT
gi|14 : tttaaaacgttatCAAATGATAAGGTTGGCACTGAATCA--C--AATTT----TCATTATTTCA----GCATAGT-TTTTTTAGTCATTTCACGTGTTTCA-G------AGAATTTACACATCAGTTACTTA---ATCAAAT--AAGTAATT---T-ATTT--T-GTAGTTAC-A-A-A---AACAGTTAATAATTAGTTTTGAAGT--TTCATTTTTG-ACAAAAATCAT--T-TGGATTTTTTTTTTT---------------AAAT-CTTATCA-TATTAGAGCAATATTCGTTGTACGTTGTATCA
gi|15 : T-TTTG--CTTCATTTCACATGTTTTAAG------AGCATTTACACATCCGTTATTTATTAATCACAT--AAATCCTT---T-ATGT--CAGT-GTCCC-A-A-A---AAAATAAAATGATTTGGTTTGAATT--TACc
gi|16 : ggtagatctaattatcactaccttCAT-ATATGAGTCTT-------G----ATTGTCAAA-AGATTCTAATCA-TTTTAGAGCAATGTACGGTATACGTTGTAC
gi|17 : gaaatcgggttcatatgcactgatagtgacgataactatgccaTTTT------------------AAG-AATT-CTTATCA-CATTAAGGCTATATCCGGTGTATGTTGTACCA
gi|18 : tttatgattccgtttttcaataattattctTCGT-GT-TGAATTTG-------A----G-----AAA-AAAT-CTTATCA-CTTATGGGCAATATCCGGTTTATGTTGTACCcac
gi|19 : tAATTTT-------GCATCG-----GAA-ATTT-CTTATCA-TTTTAAGGCAATATCCGATGTACGTTGCACC
gi|2 : ATGCCCATGCAATTATGACGACATAACTGTTTTGCACATTTTAAAGCAAGTGAAA----TGCTTTTAATCGCTGATAATG--GCAAGC--------AAA---AATATTTACCACTGAAGCAATCCCCAGTACCGGTAAATCTGTTACAGATCAATACCCA-GT--ACAC-----------ATAAATGC-AATGCCCAGTACACTGCTGATTTT-GTTTTAGTC--CTATT--TCTCGGCCATTTCATTAGATACAACCCTGATATTTGGCATAC-TTGTTCTA------TGTGTCTAACTTGGCAAA---------AAT----------AAG----ACGATATTG----AG-----TA-AAA-TGTGCACATTG-----------CACACGG-------TTATCAAATGACAAGGTTGACAAAGAATCG--C--AAGTT----TCATCATTCCA----GTATAGT-TTTG--AGTGATGTCCCGTGTTGTA-G------AGCATTTGCACATCAGTTACGTATCAATCACAT--AGATAGTT---T-ATGT--T-GCAGTCACAA-A-A---AACACTAGATAATTAGATTTTAACT--TACCTTGTTG-ACAAAAGTCAT-GT-TGAATTT
gi|3 : aatctcattaaaatcatttcaacttttaagctgtgcgtagagtttggaagcttaaagttgatcggtattaaacatcacttatcacataaaaatagaagttattacacaagtgtaaaaaaaacatagctgaccctcaaaaggaacagtggtgtaagatatacactgtatcactgctttttttacacatctacaaagtttcaatcaaataaacatactgggtgcaaagtgcgatagttaactactgatttggcaaacagacgggcggcaagttcacttcttaaaacattatATGCCCATGTAATTGTGAATACATAACTGTTTTACACATTTTAAAGCAAGTTAAA----TGCTTTCA-TCGCTAATTTTG--GCAAGA--------AAA---CATATTTACAATTGAAGCAATCCCCAGTACAATAAAATTTGTTACATATCAATACCCA-GT--ACAC-----------ATAAATGC-AGTCCCTACTAAACTGACGATTTTTGTTTTAGTC--CTATG--TCTCGGTCATTTCATTAGATACAACCCTGAAATTGAGCGTACCTTGTTCCA------TGTGTCTTATTTACTAAAT-T-GTTC-GATTCAG------AATTTTCACAACATGGCAAAAAAAAAAGA-AGA-CG---ATATTGAGTAAAATGTGCACATGGTACCCGGTGATAAAATGAAAAGGTTGACAGAGAATCG--C--AAGTT----TCATCATTCGA----GTGTAGT-TTTG--AGTGAATTCCCGTGTTGTA-G------AGCATTTGCACATTAGTTAATTAATAATCACAT--AGATAGTT---T-ATGT--T-GTAGTCGC-A-A-A---AACACTAGATAATTAGGTTTGAACT--TACCTTATTG-ACAAAAGTCAT-GC-TGAATTTT-------G----G-----TAT-AAAT-TTTATCA-CTTTAGGGCAATATCCGGTGCACGTTGTACCAgaga
gi|4 : taCAATCCCCAGTACATCAAAATG----------CAATACCCA-GTTTA-AC-----------TTTTGTGAGAATACCCAGTACACAAGCGATTTT-----TAA---------------GGTCACTTTATTGCAAACAATACTGAAATTTAGCTTAC-TTATTCTA------AGTGTCTCACCAAATACATAT-GTCC--ATTCAA------TAATTTCGTAACATAGCAATAA-----TAGAGAACA---ATATTGAGCCACATAAGCACATAACACC-GGTTAACAAATGCTAAGATTGTCAGCGAATCG--C--AATTT----TCATCATTTCA----GCACAG--TTTA--AGGCATTTCACGTGTTGTA-G------AGCATTTA-AAATT-GTTG-----TAATCACAT--AAATCGTT---T-ATGT--T-ATTATCAC-A-A-AAT-AACAGTAGATAGTTGGGTTCGATAT--TACCTTGTTG-AAAAAAATCAT-TT-AGAATTTTTG-----G----G-----AAA-AAAA-CGTATCA-CTTAAGAACAATA
gi|6 : cccGCAATCCTCAGAACAACCAAATG----------CAACACCCT-GT--ACAATTTTTGTGAGAACAATTTC-AATACCCAGTACACTGCTAACTTTCATTTTGGTC--TTATT--TCTCGGACATTCCATTACTTACAACACTGATGTGTGG---------TTCTA------TATGTCTAACTAAATGAAT-CTGTTT--ATTCAG------ATGTTTCTCAACATAGCAAAAA-----TG-AGA-TG---ATGTTGAGTAAAATGTGCACATGACAACCGTTTATCAAATGACAAAGTTGGCAGTAAATCG--C--AATTT----TCATCATTACA----GCATAGT-TATG--AGTCATTTCACATGTTGAA-G------AGCATTTACACATGAGTTATTTATTTATCACAT--GAAGCATT---C-ATGT--T-G---------------------TAGATAAATGGGTTTGAATTTATATCTTGTTG-ACTTAAATCAT-TT-GGAATTTT-------A----G-----AAATAAAgtcacacacacatatttacc
gi|7 : aattCAATTTTCATTTTAGTC--ATATT--TCTCGGCCATTTTATTAGATACAACCCTGAAATTTGGCATAC-TTGTTCTA------TGTGTCTACCTTACAAAAT-A-ATTT-GATTCAC------AATTTTAACAACATGCCAAAAA-----TA-AGA-TG---ATATTGAGTAAAATGTATACATGGCACCCAGTGATAAATTGATAAGGATGACAGAGAA----------GTT----TCATCATTCCA----GTATAGTATTTG--AGTGATTTTCCATGTTG---G------AGCATTTGCACATCAGTTACTTATTAATCACAT--AGATAGTT---TTATGT--T-GTAGTTAC-A-A-A---AACATTAGAT-------------CT--TACCTTGTTG-ACAA--GTCAT-GC-TGAATTTG-------A----G-----AAA-AAAT-CTTATCA-CTTTAGGGCAATAac
gi|8 : ataTATATATGATGCGGAAGTTCTTCACAC-TTGTTCTACATGCATGTGTCT---TTAC---AT-C-ATAT-GATCCAATCATGTAGTTTTCATGACCTCTCAGAAA------A-AGA-------TATTGAATAAAATGTAATTGTGTCACC-ATTTTTCAAGTGGTATGGTTGACA----ATCGATC--AACTTACTTTCATCATGTCA----ATACA-----TA-----TATTTCATGTATTTTA-T------AGAATTCACACATCAGATACTAATTAGTCGCCT--A---AGTTTTGT-ATGC--T-GTGGCGGG-A-ATA---AACAGTAAGTCATTAGATTTCAACC--TTCACTGCTGAACAAAA--CATAAC-AGGATTTT-------T----A-----AAA-TTTT-CTTACCATCTTTA-GGCAATATCTTATGCACGTTGTAC
gi|9 : AACTGTTTTGCACACTTCAATGCATGTTAAACTGGTGTTTTT--TC----ATATTATCGCAACA--------AAA---AATATTCATCATTGACACAATACTCAGTGC-------------AC---TTAATACAGA-AT--ACAA-----------ATAAATGT-AAAACACCGCACACCGCCCTCGTTCGTTTCA-TCAAC-ATT--TACTAGTCATTTCAATGAATACGATTCTGAAATGTTGCCCAG-TTTCTCTT------TGTGTTT--C------AAT-C-ATCCTG--CCAG------AAATT---CAA--------------------------------TGAATGAAATGGGCTCATGACACCC-ATT-TC------TGAAGTTGACATTTAAT--------ATTTCCA-TCACCATTTCAAGAGGTA-AGC-TTT---AGTTA----ACGTGTTTCA-G------AGCAATAACACATCAGaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGTCGAGGTGGTAACATGAGTACATTGTGATTCGAAAATAAAAAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAAGTAAGTGCGATATTAGCGAGCCCTTATCAGTTGCCAATATTCTTGTATTTACCAAGTAAGTTTTCAAAGCAGTTAAAATTAGTTTGTTAATCCTGCTCGCGATCAAGTTTCTTTTTATCTGTCACTATTTCACTAAATGCACTCAGCAAAAAAGGGCAATCATACTTTCTGTATTTTTTTGTATTTCAAATATATCGTATAGAAGGTTTTGAGTAGGGAGCGGTATTAAACATCACATAAAAACGAAAGCTATTCTTCCAAACATCACAA