lowQualScore : 111111111111111111111
lowQualScore : 11111 222222222222 55555555555555555555555555 111111 111 1 22222 444444 1 1111111 111 111111 333333333333333333 11111111 11 111 1111 1111111 222222222 111111111111111111111 11 1 11111 1 111111 22 1 1 1 1 1 1 1 3333333333 333 1 1 11111 222 222222 111 7777777 1 44444 1 2222 1 111 11
lowQualScore : 1 7 1 00000 555555555555 4 77 66666666666666666666666666 2 3 2 1 1 33 333333 1 999 4 5 22222 8 6 7777 2 666666 6666 1 3 66 2 66 9999 8888888 4 55 555 111111 666666666666666666 22222222 1 0 00 2 3 0 555 6666 000 55 7777777 111111111 5 000000000000000000000 00 6 0 22222 99 5 0 999 5 0 999999 6 00 8 5 0 6 5 0 4 7 3 5 1 2 3 5 5 77 5 0000000000 000 0 5 5 1 3 0 222 5 3 44444 77 1 222 333333 9 6 0 88 555 0 6666666 0 2 22222 0 1111 0 4 99 4 444 2 22
lowQualScore : . . . ..... ............ . .. .......................... . . . . . .. ...... . ... . . ..... . . .... . ...... .... . . .. . .. .... ....... . .. ... ...... .................. ........ . . .. . . . ... .... ... .. ....... ......... . ..................... .. . . ..... .. . . ... . . ...... . .. . . . . . . . . . . . . . . . .. . .......... ... . . . . . . ... . . ..... .. . ... ...... . . . .. ... . ....... . . ..... . .... . . .. . ... . ..
lowQualScore : 6 9 5 00000 666666666666 0 99 44444444444444444444444444 1 7 1 1 6 66 222222 9 000 0 0 77777 1 7 7777 0 333333 9999 1 9 11 9 11 4444 9999999 0 55 000 555555 222222222222222222 22222222 1 1 55 0 6 4 555 3333 888 11 8888888 000000000 7 000000000000000000000 00 2 4 55555 00 7 4 333 7 1 222222 0 44 0 4 7 6 0 1 0 1 7 1 4 1 7 0 0 22 0 8888888888 777 4 0 0 7 2 3 888 0 9 33333 99 6 888 000000 0 7 8 88 333 2 5555555 0 2 00000 0 2222 5 0 22 2 000 2 00
consensus : ACAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA-----TACA---A------AAC-ATATACA-AACATGAA-------------CG-GAACAGAAAGGTCACATATACGTACACGCA-----CATACATATT-A-T-TACATGCAAAACTATACAA---TTTTTCAATAACTAGTT-GTACCCACT----AATTGAGTCTTG--ACGAGAA--G-AAACACAAGACTCGAACTCGGTA--CGACCTC--AACT----TGTAC-TAN---A-A--TACCN-ATACAT------GTAAG---N-ACACTAGTAAGCATACAAAA-----TCAAAAGCCATAAGA-CAGTTTGTACCCAGTA-ATCGA-TCTTGTCGAAAC-GAAACACAAGGCTCGAACTAGGTAC------GTAATCG-------ACTG-GT----A---AT-----------GAAATA-NATTATCACAAGTCACTTTTCTTTGG-----TNGA-TTTGAA--CACA-ATGCTCAGACTA------GCTGCATAATCAAAATTTT-ACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAA-CTG-TTTCACTATTATCAGCACN--T--GGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTCACNTTCATTGCACGCACAAAACAATATTTGATGTATCA-TAAGGTTGTCA-ACCTTAAAGGTACACTTTN--TGCA-TATATCGGCTGTATGGTAGGATA-AGA-GATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACNTACGACCGAGCTTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( gi|4 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA-----TACA---A------AAC-ATATACA-AACATAAA-------------CA-GAACTGAAAGGCCACATATATATACACACA-----CATACATATT-A-T-TACATGCACAACTATACAC---TTTTTCAATAACTAGTT-GTACCCACT----AATTGAGTCTTG--A--GGAA--G-AAACACAAGACTCAAACTCGGAA--CAACCTC--AACT----TGTAC-TAT---A-A--TACCA-ATACAT------GTAAG---A-ACACCAGTAAGTATACAAAA-----TCGAAAGCCATAAGA-CAGTTTGTACCCAGTA-ATCGA-TATTGTCGAAAC-AAAACACAAGGCTCGAACTAGGTAT------ATAATGG-------ACTG-GT----A---A------------GAAATA-AATGATCACAAGTCACTTTTCTTTGG-----TAGA-TTTGAG--CACA-ATGCGCAGACTA------GCTGCATAATTAAAAATTT-ACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAA-TTG-TTTCACTATTATCAGTACA--T--GGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGTACCA-TAAGGTTGTCA-ACCTTAAAGGTACA----G--TGCA-TATATCGGCTGTATGATAGTCAA-AGA-GATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAT
gi|8 : ACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAA------ACATACA------AAC-ATAAACATAACAGAAAGGTNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNTT-AAT-TACATGCAAAACTATAGAC---TTTT-CAATTACTAGTT-GTACCCACA----AATTGAGTCTTG--ACGAGAA--G-AAACACAAGACTCAAACTCGGTA--CAACCTC--AACT----TTTAC-CGG---A-A--TACCT-ATACAT------GTAAG---T-ACACTATTAAGCATGCAAAA-----TCAAAAGCCACCAGG-CAGTTTGTAC
gi|19 : tATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA-----TACAT--A------AAG-A-ATA-G-AACA
gi|15 : ttgcggaAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA-----TACA---A------AAC-ATATACA-AACA-------------------------GAAAGGTCACACACACGCACATATA-----TATACATATTAA-T-TACATGCAAAACTGTACAC----TTTTCAATTACTAGTT-GTACCgtcac
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA-----TACA---A--------CTATATACA-GGCATATA-------------CG-GAACAGAAATATCGAATATATGTG-A-GCG-----CATACATGTT-AAT-TACATGCCAAACTATACAA---TTTT-CAATAACTAGTT-GTACCCACT----TAATGAGTATTG--ATGAGAA--A-AAACACACGACTCAAATGAGGTA--CGGCCTC--AACT----TGTAC-TAA---A-A--TACCT-ATACATTTACATGTAAG---T-ATACAAGTAAGCATACAAAC-----TCATAAGACATAAGT-CAGCT-GTACTTAGTA-ATCGA-TATTGTCGAAAC-GAAACAAAAGGCTTGAACTTGGTAC------ATAATCC-------GCTG-GT----ATTTAAATACATATT--GAAATA-CATTATCACAAGTCACTTTTCTTTGtg
gi|11 : GATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA-----TACA---A------GAC-ATATACA-----TAA--------------CA-GA-C----AGGTAACATATATATACGCACA-------TACATATTGA-T-TACATGCAAATCTATACAA---TTTT-CAATAGCTGGTT-GTACCTACT----TATTAAGTCTTG--ACAAGAA--G-AAACACAAGACTCAAACTCGGAA--CAACCTCATAATTAAAGTGTAC-TGTTGAA-A--TACAA-AAACAT------actgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|20 : ATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA-----TAC------------AC-GCATATA-TACA-GAA-------------CG-GAACGGAA
gi|17 : ctactgatATATCTTTATTATCTCCACTTAGGCAAAAGCGTCATAATACAAATATATACA---ACACTAAAAT-ATATGCA-TATAAGAA-------------CA-G-----AAAAGTCACATA
gi|1 : tTTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA-----TACT---A------A-C-ATAAACA-GATATGTA-------------CA-GAACAGAAAAGTCACATATACATACGCACA-----TATATAT-TG-A-T-TACCTTCAAAACTATCCAA----TTTTCAATAA-TAGTT-GAACCCAAT----AATTGAGTCTTG--A--CGAG----------AAGACTAAAACTAGGTA--CGAACTC--AACT----TGTAC-TA----A-A--TA--A-ATAC----------AAT---T-ATACTAGTACACATACAAAA-----TCAAAAGC
gi|14 : cgTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA-----TTCA---T------G-C-ATATACA-AA-----------------------------AAAATCACACATATTTATAAACA-----CATGCATATT-AAT-CACATGCAAAACTATACAC---ATTTTCAATAACTATTT-GCAACCACTGTTCAATTGCGTCTTGACA--AGAC--G-AATCACAAGGCTCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|5 : atataCTCCTCCGAAGGGAGAGTGACATGTTATAA-----TACA---A------ATC-ATATACT-GACATATA-------------CA-GGACAGAAAGGTCTTAGATATATTTACGCA-----CATACACATTGA-T-TACATGCAAAATTATACAA----TTTTCAATAACTAGTT-GAACCCACT----AACTGAGTCTTGACA--AGAA--GAAAACACAAGTCTCAAACTCGGTA--CGATCTC--AACT----TGTAC-T----------TAT---ATACA--------TAA--------------AAGTATACAAAA-----TATAAAGCCATAAGT-CAGTTTGTACCTAGTA-ATCGA-----GCCG------AAACACAAGG------CTAGGTAC------GTACTCG-------GCTG-GTGGTGA---AATACACATT---GAAATA-TATAGTCACAAGTCAATTTTCTTTAG-----g
gi|2 : -AACCTTAA-------------CATGTACTAAAATACC-CATACATGTACAC-CAGTAAGCATACA----------AAAT-CAAAACCATA--------------TGAC-AGTTTATACCCGGT----AATCGA-TCTTG--T--CGAAACG-AAACACAAGGCTCGAACTctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|10 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcACA-----TATACATACC-A-TGTACATGCAAGAAAATACAAAAATCTTTCAA-AATAAGTTTGTACCCATT----AATC-AATCTTG------------------------TTGAACTAGGCA--CATGATC--GACC----TGTAC-TGA---A-A--TAC---ATA-AT------GAAAT---A-Aagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|7 : aactcgtcaattttgtaacatacagtaaagtacaaaaggt-T-TACATGCAAAACTATACAC---TTTTTCAATAACTAGT----ACCCACT----GATTGAATCTTG--ACGAGAA--G-AAACACAAGACTCCAACTCGGTA--CAGCCTC--AACT----TGTAC-CAA---A-A--TACCT-TTACAT------GTAAGTACATACACTAGTAAGCATACAAAA-----ACCAAAGTCATGAGA-CAGTTTGTACCCAGTA-ATCGA-TCTTGTCGAAAC-GAAACACA-----------AGGTAT------ATAATGG-------ACTG-GT----A---ATGAAATACATTTGAAATA-AATTATCACTAGTCACTTTTCTTTGG-----TTGATTTTGAG--CACA-ATGCTCAGACTA------GCTGCATAATCAAATTTTT-ACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTA-CAG-TTTCACTATTATCAGagtagcttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|2 : attggGTT-GTACCCACT----AAATGAGTCTTG--ACGAGAA--G-AAACACAAGACTCAAACTCGGTG--CAACCTT--AACA----TGTAC-TAA---A-A--TACCC-ATACAT------GTA--------CACCAGTAAGCATACAAAA-----TCAAAA-CCATATGA-CAGTTTATACCCGGTA-ATCGA-TCTTGTCGAAAC-GAAACACAAGGCTCGAACTAGATAC------GTAATGA-------AATACAT----A---CT-----------GCAATA-AATTATCACAAGTCACTTTTCTTAGGCTGAATACA-TT---G--CATACATGCACAGa
gi|13 : taaaactaacacaggcacttccaattTT-GTACCCAGT----AATCGA-TCTTATCA--AAAC--G-AAACACAAAGCTCGAACTAGGTAGGTAA--TG--GACT----GGTA---AT---G-ATGTAACA-TTACAT------ACACG---A-AC-----T-------TAAAA-------GGAAGCT-------CAGATTGTACCCGCCA-ATTAA-TCTTGTTGAATT-TAAACACTATGCGCAGACTAGgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|10 : cacaaaatcaaaagccataaggcagtGTACATAT---ACA--TACCATGTACAT------GCAAG---A-A--------A--ATACAAAAATCTTTCAAAA----TAAG-----TTTGTACCCATTA-ATCAA-TCTTGTTGAA--------------------CTAGGCAC------ATGATCG-------ACCT-GT----A---CT-----------GAAATA-CATAATctgcatgtcaa
gi|13 : aactcgtcaattttgtaacatacagtaaagtacaaaagACAAAA-----TCAAAAGCCATAAGG-CAGTTTGTACCCAGTA-ATCGA-TCTTATCAAAAC-GAAACACAAAGCTCGAACTAGGTAG------GTAATGG-------ACTG-GT----A---A------------gaaataaagtagcttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|1 : cAAGATCTGTCTGTACCCAACA-ATTAT-TCTTGTTGAATTGAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTG-TT---------------------GGAATATAAT-ACTATAAGTCACCTTtgatgtaacattacatacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|12 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgA-CAATTTGTAATCAACACAT-GA-TCCTGTCAAATC-AAAACACAAGTCTCcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatatatgtattgaaatatagtagcatacacgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaTTGTACCTACTT-ATTAAGTCTTGACAAGAA-GAAACACAAGACTCAAACTCGGtgcataatcaaaa
gi|8 : gatagatatctttattattcaactgaagggagagcgacatgttactatacaagacatatacataacagacaggtaacatatatatacgcacatacatattgattacatgcaaatctatacaattttcaatagctggTTGTACCCACAA-ATTGAGTCTTGACGAGAA-GAAACACAAGACTCAAACTCGGTAC------Aaacaacctcataattaaagtgtactgttgaaatacaaaaacat
gi|1 : tacagatagatatctttattaagagacaaaacatatacaaacatacaaacataaacataacagaaaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattacatgcaaaactatagacttttcaattactagTTCTT--G-----TTGA-ATTGAAAACACA-ATGTTCAGACTACATGTAACTGCATAATCAAAATTTT-ACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAA-CCG-TTTCATTATTATCAGCACT--T--GGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGTATCA-TAAGGTTGTCA-ACATTAAAGGTACACATTA--TGCA-TATATCGGCTGCATGATAGGATA-AGA-GATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAacctcaacttttaccggaatacctatacatgtaagtacactattaagcatgcaaaatcaaaagccaccaggcagtttgtac
gi|2 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattaTTGT-----TGAA-TTTAAA--CACA-ATGCTCAGACTA------GCTGCATAATCAGAATTTT-ACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGT-TTTACAGTAGC-TAACA-TAA-CTA-TTTAACTGTTATCAACACA----------------------GTCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCACAAAAAAAA----AGTTGATGTATCA-TAAGGTTGTCA-ACCTGAAGGATACACT--GTTTGCA-TATGTCAGATGTACGGTAGGATA-AGA-CATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|3 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaatcTTGT-----TGAA-TTTAAA--CACA-ATGCTCAGACTA------GCTGCATAGTCAAC--TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAGTT-GTGGCATGCTTTTACAGTAGC-TAATA-TAA-CTT-TTTCACTATTATCAGCATT--TTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC-----CA---ACTGCATGCACAAAACAATATTTAATGTATCA-CAAGGTTATCA-AGCTT-TAGGTACATTTTT--TGCATTATATCGGCTGTATGGTAGACTA-CGA-GATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|13 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaataTTGT-----TGAA-TTTAAA--CACT-ATGCGCAGACTA------GCTGCATtaagact
gi|5 : cacaaaatcaaaagccataaggcagtttgtacccagtaatcgatcttatcaaaacgaaacacaaagctcgaactaggtaggtaatggactggtaatgatgtaacattacatacacgaacttaaaaggaagctcagattgtacccgccaattaatcG-----TTGA-ATTGAA---ACA-ATGCTCAGACTA------GCTGCATAATCAAAAGTTT-ACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAA-TTG-TTTCACTATTAACATCACC--T--AGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTgtcaa
gi|16 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcGGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATC--TTCCTTT--GGACAATAGGATTTAA-ACCCAGTCAGtc
gi|9 : ATATAATAACAC-AGTCACCTTCCTTTG-CTGA---ATT--CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAA-CTG-TTTCACAAGTATCAAC-CAT-T--AGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAAA--ATATTTGATGCAATC-TTAGCTTGTT--GCCTTGAcagggtt
gi|6 : AGC-TAACA-TAA-CTG-TTTCACTATTATCAACATT--T--GTGTGATAATGTTCAA-ACCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTTATCA-TAAGGT----ACACTTT----------------TGCA-TATATCGGCTGTATGGTAG--AATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTG
gi|18 : TGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGTAATATTAAGGTcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|21 : TTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 11 77777777777777777777777777777777777777 11 222 1111 1111 1111111 2222222222222222 44444444444444444444444444444444444444444 111 444444444444444444444444444444444444444444 222222222222222 111 111111 1111 11111 1111
lowQualScore : 0 0 666 3 33 3 11111111111111111111111111111111111111 11 3 777 66 000 3 1 3 7777 7777 3 0 3 3 7777 1 3 3 1 33 55 1111 2222222 3 2222222222222222 3 55555555555555555555555555555555555555555 99 88888 44 8 777 3 3 3 1 1 1 1 3 999999999999999999999999999999999999999999 3 3 1 444444444444444 4 1 4 000 5 77 999999 3 2 1 0 3 4 4 4 66 0 1111 3 5 0 1 0 2 22222 66 0 99 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . . ... . .. . ...................................... .. . ... .. ... . . . .... .... . . . . .... . . . . .. .. .... ....... . ................ . ......................................... .. ..... .. . ... . . . . . . . . .......................................... . . . ............... . . . ... . .. ...... . . . . . . . . .. . .... . . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 7 5 444 6 77 6 33333333333333333333333333333333333333 66 9 444 11 333 6 4 3 2222 1111 5 4 3 1 1111 0 3 5 4 55 00 4444 8888888 3 9999999999999999 3 55555555555555555555555555555555555555555 22 33333 66 0 666 3 3 8 0 5 6 8 3 222222222222222222222222222222222222222222 3 3 0 555555555555555 0 0 0 000 7 99 222222 5 0 0 2 8 2 4 4 11 9 9999 1 0 1 4 7 0 55555 99 2 66 7 3 7 7 7 2 7 44444 0 00 0000 0 0 88 8 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACATGNACG---G--------------AACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACAA-T--TTT----CAATAACT-AGTT-GTACCCACT----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCGAACTCGGTACGACCTC--AACT----TGTAC---T-GNA-ATACCN-A------T----ACAT-GTAAGTACA------------C------TAG--T--AA-------GCATACA--AAA-----TCA--AAAGCCATAAGN--CAGTTTGTACCCGG-TA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGAACTAGGTAC-GTAATCG-------A----CTG-GT----A---A---------T---GAA-AT-ATA-----------T---TATCACAAGTCACTT-TTCTTTGGTTG-AT---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ACAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACATGAACG---G--------------AACAGAAAGGTCACATATACGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACAATT--TTT----CAATAACT-AGTT-GTACCCACT----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCGAACTCGGTACGACCTC--AACT----TGTAC---T-ANA-ATACCN-A------T----ACAT-GTAAGNACA------------C------TAG--T--AA-------GCATACA--AAA-----TCA--AAAGCCATAAGA--CAGTTTGTACCCAG-TA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGGTAC-GTAATCG-------A----CTG-GT----A---A---------T---GAA-AT-ANA-----------T---TATCACAAGTCACTT-TTCTTTGGTNG-AT---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CNTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTCACNTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACNTACGACCGAGCTTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TACT-AA-C-ATAAACA-G---------ATATGTACA---G--------------AACAGAAAAGTCACATATAC--ATAC--GCA--CATATATATTGA-T-TACCTTCAAAACTA-TCCAA-T--TTT----CAATAA-T-AGTT-GAACCCAAT----AATTGAGTCTTGACGAG----------AAGACTAAAACTAGGTACGAACTC--AACT----TGTAC---T-A-A-ATA--A-A------T----AC-----AATTATA------------C------TAG--T--AC-------ACATACA--AAA-----TCA--AAAGC
gi|1 : cg-------A----CTG-GA----A---A---------C---GAAGAT-CTG-----------TCTGTACC-CAA--CAATTATTCTT--GTTG-AA---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcGTACA--T-ATACATACCATG------T----ACAT-GCAAGAA------------------------------A---------ATACA--AAAATCTTTCA--AAA----TAAG------TTTGTACCCAT-TA-ATCAATCTTGTTG-AACTAGGCACATGA-TCGACCT--GTACTGAAAT---------A----C---AT----A---A---------T---GAA-AT-AAA-----------G---TAGCTTACGCCATCT-TACTGTAGTTG-aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatacagtaaagtacaaaagGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TACA-AGAC-ATATACA--------------T-----------------------AACAGACAGGTAACATATA--TATAC--GCA--CATACATATTGA-T-TACATGCAAATCTA-TACAA-T--TTT----CAATAGCT-GGTT-GTACCTACT----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAACAACCTCATAATTAAAGTGTACTGTT-GAA-ATACAA-A------A----ACAT-ttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTAT-GTACTCGTCATGT-A----CTG-A-----A---A---------T---GAA-AT-ATA-----------TG--TAT
gi|12 : A--CAATTTGTAATCAA-CACAT-GATCCTGTCAAATCAAAACACAAGTCTCtgaaatatagtagcatacacgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatatatgtattgaaatatagtagcatacacgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaACA--AAA-----TCA--AAAGCCATAAGG--CAGTTTGTACCCAG-TA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAG-GTAATGG-------A----CTG-GT----A---A---------T---GAT-GTAACA-----------T---TAtgcataatcaaaa
gi|13 : cTT-GTACCCAGT----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAGG----T--AA------TGGAC---TGGTA-ATG------------------AT-GTA---ACA------------T------TA----------------CATACACGAAC-----TTA--AAAG---GAAGCT-CAGATTGTACCCGC-CA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGC-ATcatacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTCA-TG-C-ATATACA-A---------A--------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CACATGCAAAACTA-TACACAT--TTT----CAATAACT-ATTT-GCAACCACTGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA--------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TACATGCAAAACTG-TAC-ACT--TTT----CAATTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TACA-AA-T-ATATACA-ACACTAAAATATATGCATATAAG--------------AACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TACATAAAG-A-ATA-G-A---------ACA
gi|2 : ttgcggaAAAACTAACACAGGCACTTC----CAAT---T--GTT-GTACCCACT----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGCAACCTT--AACA----TGTAC---T-AAA-ATACCC-A------T----ACAT-GT----ACA------------C------CAG--T--AA-------GCATACA--AAA-----TCA--AAA-CCATATGA--CAGTTTATACCCGG-TA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATAC-GTAATGA-------A----ATACAT----A---C---------T---GCA-AT-AAA-----------T---TATCACAAGTCACTT-TTCTTAGGCTGAATACATT-GCA--TAC-ATGCACAGgtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------AAAT-CAAAACCA-TATGA-----------CAGT-------TT-ATACCCGGT----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATACGTAATG--AAATA---CATAC---T-GCA-ATA--A-A------T-----TATCACAAGT-CA------------CTTTTCTTAGGCT--GAATACATTGCATACA--TGC-----ACAGGAAAG---TAAGCT-CAGTTT-TGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGC-ATAATCAGAATTTTA----CT--GT------------------T---GGA-AT-ATA-----------A---AACCATAAGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTTGTTGA-AT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaatcATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC----AC-GCATATA-T---------ACA-GAACG---G--------------AACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TACA-A--CTATATACA-G---------GCATATACG---G--------------AACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TACATGCCAAACTA-TACAATT--TT-----CAATAACT-AGTT-GTACCCACT----TAATGAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTACGGCCTC--AACT----TGTAC---T-AAA-ATACCT-ATACATTT----ACAT-GTAAGTATA------------C------AAG--T--AA-------GCATACA--AAC-----TCA--TAAGACATAAGT--CAG-CTGTACTTAG-TA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTAC-ATAATCC-------G----CTG-GT----ATTTAAATACATATT---GAA-AT-ACA-----------T---TATCACAAGTCACTT-TTCTTTGACTG-Agcagggcaaactggagaagcattgct
gi|3 : --CAGTTTTAACCCGA-CA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGC-ATAGTCA-------A----CTT-TC----A---C---------TGTCGGA-AT-ATA-----------A---TAACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctTTGTTGA-AT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaataATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TACA-AAAC-ATATACA-A---------ACATAAACA---G--------------AACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TACATGCACAACTA-TACACTT--TTT----CAATAACT-AGTT-GTACCCACT----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAACAACCTC--AACT----TGTAC---T-ATA-ATACCA-A------T----ACAT-GTAAGAACA------------C------CAG--T--AA-------GTATACA--AAA-----TCG--AAAGCCATAAGA--CAGTTTGTACCCAG-TA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTAT-ATAATGG-------A----CTG-GT----A---A-------------GAA-AT-AAA-----------T---GATCACAAGTCACTT-TTCTTTGGTAG-AT---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TACA-AATC-ATATACT-G---------ACATATACA---G--------------GACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TACATGCAAAATTA-TACAA-T--TTT----CAATAACT-AGTT-GAACCCACT----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTACGATCTC--AACT----TGTAC---T------TA--T-A------T----ACA---TAA--------------------------------AA-------GTATACA--AAA-----TAT--AAAGCCATAAGT--CAGTTTGTACCTAG-TA-ATCGAGC---------CGAAACACAAGG------CTAGGTAC-GTACTCG-------G----CTG-GTGGTGA---AATACACAT-T---GAA-AT-ATA-----------T---AGTCACAAGTCAATT-TTCTTTAGCTG-At
gi|5 : TT-A-TATACAT--AAAAGTA-TACAAAA--TATAAAGCCATAAGTCAGTTTGTACCTAGT----AATCGAGCC----------G-AAACACAAGGCT--A----GGTACGTACTC--GGCT----GGTGG---T-GAA-ATACAC-A------TTGAAATAT-ATAGTCACAAGTCAATTTTCTT------TAG--CTGAA-------G-ATACACGCAA-----TGA--AAAG----AAGGCTCAGTTTATACCCGA-CA-ATTAATCTCGTTGAATTGAA--ACAATGCTCAGACTAGCTGC-ATAATCA-------AAAGTTTA-CT----A---T---------T---GGA-AT-ATA-----------A---AACCATAAGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-AA---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TACATGCAAAACTA-TACACTT--TTT----CAATAACT-AGT----ACCCACT----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTACAGCCTC--AACT----TGTAC---C-AAA-ATACCT-T------T----ACAT-GTAAGTACATACA--------C------TAG--T--AA-------GCATACA--AAA-----ACC--AAAGTCATGAGA--CAGTTTGTACCCAG-TA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TAT-ATAATGG-------A----CTG-GT----A---A---------T---GAA-AT-ACATTTGAAATAAAT---TATCACTAGTCACTT-TTCTTTGGTTG-AT---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATACA-AA-C-ATAAACATA---------ACA-GAAAG---GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TACATGCAAAACTA-TA-GACT--TTT----CAATTACT-AGTT-GTACCCACA----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTACAACCTC--AACT----TTTAC---C-GGA-ATACCT-A------T----ACAT-GTAAGTACA------------C------TAT--T--AA-------GCATGCA--AAA-----TCA--AAAGCCACCAGG--CAGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 11 666666666666666666666666666666666666 111 222 1111 1111111 2222222222 33333333333333333333333333333333333333333333333333 1111 444444444444444444444444444444444444444444 2222222222222222 11111 111111 11111 11 1111
lowQualScore : 0 666 3 33 3 555555555555555555555555555555555555 2 2 000 66 000 3 1 3 999 6 88888 3 0 3 3 7777 1 3 3 1 33 55 1111 0000000 1111111111 44 3 3 99999999999999999999999999999999999999999999999999 99 88888 44 77 6666 3 5 1 1 1 1 3 999999999999999999999999999999999999999999 0 3 7777777777777777 4 55 4 77777 5 77 999999 3 2 1 0 2 4 4 4 66 0 8888 3 5 0 1 0 22222 66 0 00 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . ... . .. . .................................... . . ... .. ... . . . ... . ..... . . . . .... . . . . .. .. .... ....... .......... .. . . .................................................. .. ..... .. .. .... . . . . . . . .......................................... . . ................ . .. . ..... . .. ...... . . . . . . . . .. . .... . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 5 444 6 77 6 000000000000000000000000000000000000 1 1 222 11 333 6 4 3 222 7 33333 5 4 3 1 1111 0 3 5 4 55 00 4444 9999999 4444444444 66 3 3 22222222222222222222222222222222222222222222222222 22 33333 66 33 3333 3 4 0 5 6 8 3 222222222222222222222222222222222222222222 8 3 4444444444444444 0 00 0 33333 7 99 222222 5 0 0 2 8 2 4 4 11 9 2222 1 0 1 4 7 55555 99 2 99 7 3 7 7 7 2 7 44444 0 00 0000 0 4 88 4 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---ATTTT-CAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCGAACTCGGTACGACCTC--AACT----TGTAC---TGA-AATACCNA------T--AC-AT-GTA-AGTACA----C------TAG--T-A---------A-------GC-----ATACA--AAA-----TCA--AAAGCCATAAG--N-CAGTTTGTACCCGGTA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGAACTAGGTAC-GTAATCG-------A----CTG-GT----A---A---------T---GAA-ATATAT---T-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---ATTTT-CAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCGAACTCGGTACGACCTC--AACT----TGTAC---TGN-AATACCNA------T--AC-AT-GTA-AGTACA----C------TAG--T-A---------A-------GC-----ATACA--AAA-----TCA--AAAGCCATAAG--N-CAGTTTGTACCCGGTA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGAACTAGGTAC-GTAATCG-------A----CTG-GT----A---A---------T---GAA-ATATAT---T-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TACT-AA-C-ATAAACA-G---------ATA-------------TGTACA---GAACAGAAAAGTCACATATA--CATAC--GCA--CATATATATTGA-T-TACCTTCAAAACTA-TCCA---ATTTT-CAA-----TAA-T-AGTT-GAACCCAAT----AATTGAGTCTTGACGAG----------AAGACTAAAACTAGGTACGAACTC--AACT----TGTAC---T-A-AATA--AA------T--AC------A-ATTATA----C------TAG--T-A---------C-------AC-----ATACA--AAA-----TCA--AAAGC
gi|1 : cg-------A----CTG-GA----A---A---------C---GAAGATCTGTCTGT-----------ACC-CAA--CAATTATTCTT--GTTG-A-A---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcATAC--A------T--ACCAT-GTA-CATGCA------------AG--A-A---------A--------------ATACA--AAAATCTTTCA--AAA----TAAG-------TTTGTACCCATTA-ATCAATCTTGTTGAA-CTAGGCACATGA-TCGACCT--GTACTGAAAT---------A----C---AT----A---A---------T---GAA-ATAAAG---T-----------AGCTTACGCCATCT-TACTGTAGTTG-aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatacagtaaagtacaaaaggtacatGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TACA-AGAC-ATATACA---------------------------T---------AACAGACAGGTAACATATATATAC----GCA--CATACATATTGA-T-TACATGCAAATCTA-TACA---ATTTT-CAA-----TAGCT-GGTT-GTACCTACT----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAACAACCTCATAATTAAAGTGTACTGTTGA-AATACAAA------A--AC-AT-ttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTAT-GTACTCGTCATGT-A----CTG-A-----A---A---------T---GAA-ATATATG--T-----------AT
gi|12 : -CAATTTGTAATCAACACAT-GATCCTGTCAAATCAAAACACAAGTCTCtgaaatatagtagcatacacgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatatatgtattgaaatatagtagcatacacgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaaACA--AAA-----TCA--AAAGCCATAAG--G-CAGTTTGTACCCAGTA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAG-GTAATGG-------A----CTG-GT----A---A---------T---G---ATGTAA---C-----------ATTACAtgcataatcaaaa
gi|13 : cTT-GTACCCAGT----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAGG----T--AA------TGGAC---TGGTAATG----------------AT-GTA-A---CA----T------TA------------------------C-----ATACACGAAC-----TTA--AAAGG---AAG--CTCAGATTGTACCCGCCA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGC-ATtacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTCA-TG-C-ATATACA-A---------A-------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CACATGCAAAACTA-TACAC--ATTTT-CAA-----TAACT-ATTT-GCAACCACTGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TACATGCAAAACTG-TACA---CTTTT-CAA-----TTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TACA-AA-T-ATATACA-ACACTAAAATATA-------------TGCATATAAGAACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TACATAAAG-A-ATA-G-A---------ACA-------------
gi|2 : ttgcggaAAAACTAACACAGGCACTTC-CAA-----T---T--GTT-GTACCCACT----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGCAACCTT--AACA----TGTAC---TAA-AATACCCA------T--AC-AT-GTA-----CA----C------CAG--T-A---------A-------GC-----ATACA--AAA-----TCA--AAA-CCATATG--A-CAGTTTATACCCGGTA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATAC-GTAATGA-------A----ATACAT----A---C---------T---GCA-ATAAAT---T-----------ATCACAAGTCACTT-TTCTTAGGCTGAA-TACATT-GCA--TAC-ATGCACAGgtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------AAAT-CAAAACCA-TATG---A-----CAG-----T-------TT-ATACCCGGT----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATACGTAATG--AAATA---CATAC---TGC-AATA--AA------T---T-ATCACA-AGT-CA----CTTTTCTTAGGCT-G---------AATACATTGC-----ATACA--TGC-----ACAGGAAAG---TAAGC-T-CAGTTTTGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGC-ATAATCAGAATTTTA----CT--GT------------------T---GGA-ATATAA---A-----------ACCATAAGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTCTT--GTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaaATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC----AC-GCATATA-T---------ACA--------------GAACG---GAACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TACA-A--CTATATACA-G---------GCA-------------TATACG---GAACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TACATGCCAAACTA-TACA---ATTTT-CAA-----TAACT-AGTT-GTACCCACT----TAATGAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTACGGCCTC--AACT----TGTAC---TAA-AATACCTATACATTT--AC-AT-GTA-AGTATA----C------AAG--T-A---------A-------GC-----ATACA--AAC-----TCA--TAAGACATAAG--T-CAG-CTGTACTTAGTA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTAC-ATAATCC-------G----CTG-GT----ATTTAAATACATATT---GAA-ATACAT---T-----------ATCACAAGTCACTT-TTCTTTGACTG-A-gcagggcaaactggagaagcattgct
gi|3 : -CAGTTTTAACCCGACA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGC-ATAGTCA-------A----CTT-TC----A---C---------TGTCGGA-ATATAA---T-----------AACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctGTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TAAACA---GAACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TACATGCACAACTA-TACA---CTTTTTCAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAACAACCTC--AACT----TGTAC---TAT-AATACCAA------T--AC-AT-GTA-AGAACA----C------CAG--T-A---------A-------GT-----ATACA--AAA-----TCG--AAAGCCATAAG--A-CAGTTTGTACCCAGTA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTAT-ATAATGG-------A----CTG-GT----A---A-------------GAA-ATAAAT---G-----------ATCACAAGTCACTT-TTCTTTGGTAG-A-T---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TACA-AATC-ATATACT-G---------ACA-------------TATACA---GGACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TACATGCAAAATTA-TACA---ATTTT-CAA-----TAACT-AGTT-GAACCCACT----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTACGATCTC--AACT----TGTAC---T-----TA--TA------T--AC-A---TA-A-----------------------A---------A-------GT-----ATACA--AAA-----TAT--AAAGCCATAAG--T-CAGTTTGTACCTAGTA-ATCGAGC---------CGAAACACAAGG------CTAGGTAC-GTACTCG-------G----CTG-GTGGTGA---AATACACAT-T---GAA-ATATAT---A-----------GTCACAAGTCAATT-TTCTTTAGCTG-A-t
gi|5 : TT-A-TATACAT--AAAAGTA-TACA---AAATA-TAAAGCCATAAGTCAGTTTGTACCTAGT----AATCGAGCC----------G-AAACACAAGGCT--A----GGTACGTACTC--GGCT----GGTGG---TGA-AATACACA------TTGAA-AT-ATATAGT-CA----C------AAG--TCAATTTTCTTTA-------GCTGAAGATACACGCAA-----TGA--AAAG----AAGGCT-CAGTTTATACCCGACA-ATTAATCTCGTTGAATTGAA--ACAATGCTCAGACTAGCTGC-ATAATCA-------AAAGTTTA-CT----A---T---------T---GGA-ATATAA---A-----------ACCATAAGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-A-A---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TACATGCAAAACTA-TACA---CTTTTTCAA-----TAACT-AGT----ACCCACT----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTACAGCCTC--AACT----TGTAC---CAA-AATACCTT------T--AC-AT-GTA-AGTACATACAC------TAG--T-A---------A-------GC-----ATACA--AAA-----ACC--AAAGTCATGAG--A-CAGTTTGTACCCAGTA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TAT-ATAATGG-------A----CTG-GT----A---A---------T---GAA-ATACAT---TTGAAATAAATTATCACTAGTCACTT-TTCTTTGGTTG-A-T---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATACA-AA-C-ATAAACATA---------ACAGAAAGGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TACATGCAAAACTA-TAGA---CTTTT-CAA-----TTACT-AGTT-GTACCCACA----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTACAACCTC--AACT----TTTAC---CGG-AATACCTA------T--AC-AT-GTA-AGTACA----C------TAT--T-A---------A-------GC-----ATGCA--AAA-----TCA--AAAGCCACCAG--G-CAGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 11 666666666666666666666666666666666666 1111 111 11111111 11111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111 4444444444444444444444444444444444444444 2222222222222222 11111 111111 11111 11 1111
lowQualScore : 0 666 3 33 3 555555555555555555555555555555555555 11 0 0000 55 777 6 0 3 33333333 6 77777 2 0 3 5 6666 0 0 0 2 3 3 3 11111 44 6666 555 1 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 44 44 44 77 999999999 44 3 0 2 33 2 0 8888888888888888888888888888888888888888 1 3 9999999999999999 4 6 4 77777 5 77 999999 3 2 1 0 2 4 4 4 66 0 8888 3 5 0 1 0 22222 66 0 00 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . ... . .. . .................................... .. . .... .. ... . . . ........ . ..... . . . . .... . . . . . . . ..... .. .... ... . . ................................................................................................. .. .. .. .. .. ......... .. . . . .. . . ........................................ . . ................ . . . ..... . .. ...... . . . . . . . . .. . .... . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 5 444 6 77 6 000000000000000000000000000000000000 77 9 7777 55 777 7 4 1 44444444 2 77777 5 8 1 7 5555 2 6 7 1 1 4 5 88888 22 1111 000 7 9 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 22 66 66 33 111111111 66 6 4 3 55 8 2 8888888888888888888888888888888888888888 7 6 4444444444444444 4 5 4 33333 7 99 222222 5 0 0 2 8 2 4 4 11 9 2222 1 0 1 4 7 55555 99 2 99 7 3 7 7 7 2 7 44444 0 00 0000 0 4 88 4 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNA------T--ACAT----GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGGTACGTAATCG-------A----CTG-GT----A---A---------T---GAA-ATATAT---T-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCGAACTCGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNA------T--ACAT----GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGTA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGAACTAGGTACGTAATCG-------A----CTG-GT----A---A---------T---GAA-ATATAT---T-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TACT-AA-C-ATAAACA-G---------ATA-------------TGTACA---GAACAGAAAAGTCACATATA--CATAC--GCA--CATATATATTGA-T-TACCTTCAAAACTA-TCCA---A----TTTT-CAA-----TAA-T-AGTT-GAACCCAAT----AATTGAGTCTTGACGAG----------AAGACTAAAACTAGGTAC--GAACTC--AACT----TGTAC---T-A-AATA--------------AA------T--AC------------------A-ATTATA----C------T--AG--T----------------AC-------ACATAC--A--A--AATCA--AAAGC
gi|1 : cg-------A----CTG-GA----A---A---------C---GAAGATCTGTCTGT-----------ACC-CAA--CAATTATTCTT--GTTG-A-A---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcACAGTAAAGT-ACAAA-AGGTACAT--------ATACATACC-A-TGTACATGCAAGAAAA-TACA---AAAATCTTT-CAA------AATA-AGTTTGTACCCATT----AATC-AATCTTG--------------------TTGAACTAGGCACATGA--TC--GACC----TGTAC---TGA-AATA------C--------A------T--A-AT----G-----------A-AATAAA----G------T--AG--aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TACA-AGAC-ATATACA---------------------------T---------AACAGACAGGTAACATATATATAC----GCA--CATACATATTGA-T-TACATGCAAATCTA-TACA---A----TTTT-CAA-----TAGCT-GGTT-GTACCTACT----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTCATAATTAAAGTGTACTGTTGA-AATA------C------AAA------A--ACAT----cttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTATGTACTCGTCATGT-A----CTG-A-----A---A---------T---GAA-ATATATG--T-----------AT
gi|12 : AAGGCTTCAATTAGGTAT--GTACTC--GTCA----TGTAC---TGA-AATG-------------AAA------T--ATAT----GTATTG------A-AATA-------------T--AG--T-----------------A-------GCATAC--A--tgaaatatagtagcatacacgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|12 : ----TGTAT---TGA-AATATAGTAGC------ATA------C--ACGT----GTTACTTCTTTGA-AATACG----C------TGAAG--TCGTT------------AC-------GTGTACTGA--A--AAT-A--GAAGC--TCAG-TTTTCCAAC--AATTTGTAATCAACACAT-GATCCTGTCAAATCAAAACACAAGTCTCcgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatataAC--A--A--AATCA--AAAGCCATAAG-G-------C--AGTTTGTACCCAGTA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAGGTAATGG-------A----CTG-GT----A---A---------T---G---ATGTAA---C-----------ATTACAtgcataatcaaaa
gi|13 : cTT-GTACCCAGT----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAG--G----T--AA------TGGAC---TGGTAATG---------------------------AT----GT----------A----ACA----T------T--A------------------------------CATAC--ACGA--ACTTA--AAAG---GAAGCT-------C--AGATTGTACCCGCCA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGCATtacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTCA-TG-C-ATATACA-A---------A-------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CACATGCAAAACTA-TACAC--A----TTTT-CAA-----TAACT-ATTT-GCAACCACTGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TACATGCAAAACTG-TACA---C----TTTT-CAA-----TTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TACA-AA-T-ATATACA-ACACTAAAATATA-------------TGCATATAAGAACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TACATAAAG-A-ATA-G-A---------ACA-------------
gi|2 : ttgcggaAAAACTAACACAGGCA----CTTC-CAA-----T---T--GTT-GTACCCACT----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGC--AACCTT--AACA----TGTAC---TAA-AATA------C------CCA------T--ACAT----GT----------A-----CA----C------C--AG--T----------------AA-------GCATAC--A--A--AATCA--AAA-CCATATG-A-------C--AGTTTATACCCGGTA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATACGTAATGA-------A----ATACAT----A---C---------T---GCA-ATAAAT---T-----------ATCACAAGTCACTT-TTCTTAGGCTGAA-TACATT-GCA--TAC-ATGCACAGgtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------AAAT-CAAAACCA-TATG---A---------CAG-----T-------TT-ATACCCGGT----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATAC-------------------GTAA---TGA-AATA------CATACTGCAA------T--AAATTATCAC----------A-AGT-CA----CTTTTCTT--AGGCT----------------GAATACATTGCATAC--A--T--GCACAGGAAAG---TAAGCT-------C--AGTTTTGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAATCAGAATTTTA----CT--GT------------------T---GGA-ATATAA---A-----------ACCATAAGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTCTT--GTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaaATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC----AC-GCATATA-T---------ACA--------------GAACG---GAACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TACA-A--CTATATACA-G---------GCA-------------TATACG---GAACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TACATGCCAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----TAATGAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTAC--GGCCTC--AACT----TGTAC---TAA-AATA------C------CTATACATTT--ACAT----GT----------A-AGTATA----C------A--AG--T----------------AA-------GCATAC--A--A--ACTCA--TAAGACATAAG-T-------C--AG-CTGTACTTAGTA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTACATAATCC-------G----CTG-GT----ATTTAAATACATATT---GAA-ATACAT---T-----------ATCACAAGTCACTT-TTCTTTGACTG-A-gcagggcaaactggagaagcattgct
gi|3 : -------C--AGTTTTAACCCGACA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAGTCA-------A----CTT-TC----A---C---------TGTCGGA-ATATAA---T-----------AACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctGTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TAAACA---GAACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TACATGCACAACTA-TACA---C----TTTTTCAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTC--AACT----TGTAC---TAT-AATA------C------CAA------T--ACAT----GT----------A-AGAACA----C------C--AG--T----------------AA-------GTATAC--A--A--AATCG--AAAGCCATAAG-A-------C--AGTTTGTACCCAGTA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTATATAATGG-------A----CTG-GT----A---A-------------GAA-ATAAAT---G-----------ATCACAAGTCACTT-TTCTTTGGTAG-A-T---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TACA-AATC-ATATACT-G---------ACA-------------TATACA---GGACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TACATGCAAAATTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GAACCCACT----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTAC--GATCTC--AACT----TGTAC---T-----TA--------------TA------T--ACA------T----------A-A----------------------------------------AA-------GTATAC--A--A--AATAT--AAAGCCATAAG-T-------C--AGTTTGTACCTAGTA-ATCGAGC---------CGAAACACAAGG------CTAGGTACGTACTCG-------G----CTG-GTGGTGA---AATACACAT-T---GAA-ATATAT---A-----------GTCACAAGTCAATT-TTCTTTAGCTG-A-t
gi|5 : TT-A-TATACAT--AAAAGTA-TACA---A----AATA-TAAAGCCATAAGTCAGTTTGTACCTAGT----AATCGAGCC----------G-AAACACAAGGCT---A---GGTAC--GTACTC--GGCT----GGTGG---TGA-AATA------C------ACA------TTGAAAT----AT----------ATAGT-CA----C------A--AG--TCAATTTTCTTTAGCTGAA-------G-ATAC--A--CGCAATGA--AAAG----AAG-G-------CTCAGTTTATACCCGACA-ATTAATCTCGTTGAATTGAA--ACAATGCTCAGACTAGCTGCATAATCA-------AAAGTTTA-CT----A---T---------T---GGA-ATATAA---A-----------ACCATAAGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-A-A---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TACATGCAAAACTA-TACA---C----TTTTTCAA-----TAACT-AGT----ACCCACT----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTAC--AGCCTC--AACT----TGTAC---CAA-AATA------C------CTT------T--ACAT----GT----------A-AGTACATACAC------T--AG--T----------------AA-------GCATAC--A--A--AAACC--AAAGTCATGAG-A-------C--AGTTTGTACCCAGTA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TATATAATGG-------A----CTG-GT----A---A---------T---GAA-ATACAT---TTGAAATAAATTATCACTAGTCACTT-TTCTTTGGTTG-A-T---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATACA-AA-C-ATAAACATA---------ACAGAAAGGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TACATGCAAAACTA-TAGA---C----TTTT-CAA-----TTACT-AGTT-GTACCCACA----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTAC--AACCTC--AACT----TTTAC---CGG-AATA------C------CTA------T--ACAT----GT----------A-AGTACA----C------T--AT--T----------------AA-------GCATGC--A--A--AATCA--AAAGCCACCAG-G-------C--AGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 11 666666666666666666666666666666666666 1111 111 11111111 11111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222222 11111111111111 4444444444444444444444 3333333333333333 11111 111111 11111 11 1111
lowQualScore : 0 666 3 33 3 555555555555555555555555555555555555 11 0 0000 55 777 6 0 3 33333333 6 77777 2 0 3 5 3 6666 3 0 0 0 0 3 2 3 1 11111 44 6666 555 1 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 88888 44 88 44 77 4444444444 3 0 2 0 22 4 1 66666666666666 44 7777777777777777777777 2 4 0000000000000000 4 6 4 77777 5 77 999999 3 2 1 0 2 4 4 4 66 0 8888 3 5 0 1 0 22222 66 0 00 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . ... . .. . .................................... .. . .... .. ... . . . ........ . ..... . . . . . .... . . . . . . . . . ..... .. .... ... . . .............................................................................................. ..... .. .. .. .. .......... . . . . .. . . .............. .. ...................... . . ................ . . . ..... . .. ...... . . . . . . . . .. . .... . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 5 444 6 77 6 000000000000000000000000000000000000 77 9 7777 55 777 7 4 1 44444444 2 77777 5 8 1 7 1 5555 7 2 6 7 2 1 2 4 0 88888 22 1111 000 7 9 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 22 55 66 33 1111111111 6 4 3 5 88 1 2 55555555555555 77 1111111111111111111111 8 0 1111111111111111 4 5 4 33333 7 99 222222 5 0 0 2 8 2 4 4 11 9 2222 1 0 1 4 7 55555 99 2 99 7 3 7 7 7 2 7 44444 0 00 0000 0 4 88 4 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCAC-T----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNA------T--ACAT----GT----------A-AGTACA----C------T--AG--T----A---------A-------GC-----ATAC--A--AAATCA--AAAGCCATAAG--N-------CAGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A---A---------T---GAA-ATATAT---N-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCAC-T----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNA------T--ACAT----GT----------A-AGTACA----C------T--AG--T----A---------A-------GC-----ATAC--A--AAATCA--AAAGCCATAAG--N-------CAGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGGTACGTAATCG-------A----CTG-GT----A---A---------T---GAA-ATATAT---T-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TACT-AA-C-ATAAACA-G---------ATA-------------TGTACA---GAACAGAAAAGTCACATATA--CATAC--GCA--CATATATATTGA-T-TACCTTCAAAACTA-TCCA---A----TTTT-CAA-----TAA-T-AGTT-GAACCCAA-T----AATTGAGTCTTGACGAGAAG-A---------CTAAAACTAGGTAC--GAACTC--AACT----TGTAC---T-A-AATA--------------AA------T--AC------------------A-ATTATA----C------T--AG--T----A---------C-------AC-----ATAC--A--AAATCA--AAAGC
gi|1 : cg-------A----CTG-GA----A---A---------C---GAAGATCTGTCTGT-----------ACC-CAA--CAATTATTCTT--GTTG-A-A---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcACAGTAAAGT-ACAAA-AGGTACAT--------ATACATACC-A-TGTACATGCAAGAAAA-TACA---AAAATCTTT-CAA------AATA-AGTTTGTACCCAT-T----AATC-AATCTTG--------------------TTGAACTAGGCACATGA--TC--GACC----TGTAC---TGA-AATA------C--------A------T--A-AT----G-----------A-AATAAA----G------T--AG--aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TACA-AGAC-ATATACA---------------------------T---------AACAGACAGGTAACATATATATAC----GCA--CATACATATTGA-T-TACATGCAAATCTA-TACA---A----TTTT-CAA-----TAGCT-GGTT-GTACCTAC-T----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTCATAATTAAAGTGTACTGTTGA-AATA------C------AAA------A--ACAT----cttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTAT--GTACTC--GTCA----TGTAC---TGA-AATG-------------AAA------T--ATAT----GTATTG------A-AATA-------------T--AG--T--------------A-------GC-----ATAC--A--
gi|12 : ----TGTAT---TGA-AATATAGTAGC------ATA------C--ACGT----GTTACTTCTTTGA-AATACG----C------TGAAG--TCGTTA---------C-------GT-----GTACTGA--AAAT-A--GAAGC--TCAG--TTTTCCAACAATTTGTAATCAACACAT-GATCCTGTCAAATCAAAACACAAGTCTCcgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatataAC--A--AAATCA--AAAGCCATAAG--G-------CAGTTTGTACCCAGTA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAGGTAATGG-------A----CTG-GT----A---A---------T---G---ATGTAA---C-----------ATTACAtgcataatcaaaa
gi|13 : cTT-GTACCCAG-T----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAG--G----T--AA------TGGAC---TGGTAATG---------------------------AT----GT----------A----ACA----T------T--A---------------------------C-----ATAC--ACGAACTTA--AAAG---GAAGC-T-------CAGATTGTACCCGCCA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGCATtacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTCA-TG-C-ATATACA-A---------A-------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CACATGCAAAACTA-TACAC--A----TTTT-CAA-----TAACT-ATTT-GCAACCAC-TGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TACATGCAAAACTG-TACA---C----TTTT-CAA-----TTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TACA-AA-T-ATATACA-ACACTAAAATATA-------------TGCATATAAGAACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TACATAAAG-A-ATA-G-A---------ACA-------------
gi|2 : ttgcggaAAAACTAACACAGGCA----CTTC-CAA-----T---T--GTT-GTACCCAC-T----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGC--AACCTT--AACA----TGTAC---TAA-AATA------C------CCA------T--ACAT----GT----------A-----CA----C------C--AG--T----A---------A-------GC-----ATAC--A--AAATCA--AAA-CCATATG--A-------CAGTTTATACCCGGTA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATACGTAATGA-------A----ATACAT----A---C---------T---GCA-ATAAAT---T-----------ATCACAAGTCACTT-TTCTTAGGCTGAA-TACATT-GCA--TAC-ATGCACAGgtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------AAAT-CAAAACCA-TATG---A---------CAG-----T-------TT-ATACCCGG-T----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATAC-------------------GTAA---TGA-AATA------CATACTGCAA------T--AAATTATCAC----------A-AGT-CA----CTTTTCTT--AGGCT----G---------AATACATTGC-----ATAC--A--TGCACAGGAAAG---TAAGC-T-------CAGTTTTGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAATCAGAATTTTA----CT--GT------------------T---GGA-ATATAA---A-----------ACCATAAGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTCTT--GTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaaATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC----AC-GCATATA-T---------ACA--------------GAACG---GAACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TACA-A--CTATATACA-G---------GCA-------------TATACG---GAACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TACATGCCAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACTT----AAT-GAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTAC--GGCCTC--AACT----TGTAC---TAA-AATA------C------CTATACATTT--ACAT----GT----------A-AGTATA----C------A--AG--T----A---------A-------GC-----ATAC--A--AACTCA--TAAGACATAAG--T-------CAG-CTGTACTTAGTA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTACATAATCC-------G----CTG-GT----ATTTAAATACATATT---GAA-ATACAT---T-----------ATCACAAGTCACTT-TTCTTTGACTG-A-gcagggcaaactggagaagcattgct
gi|3 : -------CAGTTTTAACCCGACA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAGTCA-------A----CTT-TC----A---C---------TGTCGGA-ATATAA---T-----------AACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctGTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TAAACA---GAACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TACATGCACAACTA-TACA---C----TTTTTCAA-----TAACT-AGTT-GTACCCAC-T----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTC--AACT----TGTAC---TAT-AATA------C------CAA------T--ACAT----GT----------A-AGAACA----C------C--AG--T----A---------A-------GT-----ATAC--A--AAATCG--AAAGCCATAAG--A-------CAGTTTGTACCCAGTA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTATATAATGG-------A----CTG-GT----A---A-------------GAA-ATAAAT---G-----------ATCACAAGTCACTT-TTCTTTGGTAG-A-T---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TACA-AATC-ATATACT-G---------ACA-------------TATACA---GGACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TACATGCAAAATTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GAACCCAC-T----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTAC--GATCTC--AACT----TGTAC---T-----TA--------------TA------T--ACA------T----------A-A----------------------------A---------A-------GT-----ATAC--A--AAATAT--AAAGCCATAAG--T-------CAGTTTGTACCTAGTA-ATCGAGC---------CGAAACACAAGG------CTAGGTACGTACTCG-------G----CTG-GTGGTGA---AATACACAT-T---GAA-ATATAT---A-----------GTCACAAGTCAATT-TTCTTTAGCTG-A-t
gi|5 : TT-A-TATACAT--AAAAGTA-TACA---A----AATA-TAAAGCCATAAGTCAGTTTGTACCTAG-T----AATCGAGCC----------G-AAACACAAGG------CTAGGTAC--GTACTC--GGCT----GGTGG---TGA-AATA------C------ACA------TTGAAAT----AT----------ATAGT-CA----C------A--AG--TC---AATTTTCTTTA-------GCTGAAGATAC--ACGCAATGA--AAAG----AAGGCT-------CAGTTTATACCCGACA-ATTAATCTCGTTGAATTGAA--ACAATGCTCAGACTAGCTGCATAATCA-------AAAGTTTA-CT----A---T---------T---GGA-ATATAA---A-----------ACCATAAGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-A-A---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TACATGCAAAACTA-TACA---C----TTTTTCAA-----TAACT-AGT----ACCCAC-T----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTAC--AGCCTC--AACT----TGTAC---CAA-AATA------C------CTT------T--ACAT----GT----------A-AGTACATACAC------T--AG--T----A---------A-------GC-----ATAC--A--AAAACC--AAAGTCATGAG--A-------CAGTTTGTACCCAGTA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TATATAATGG-------A----CTG-GT----A---A---------T---GAA-ATACAT---TTGAAATAAATTATCACTAGTCACTT-TTCTTTGGTTG-A-T---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATACA-AA-C-ATAAACATA---------ACAGAAAGGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TACATGCAAAACTA-TAGA---C----TTTT-CAA-----TTACT-AGTT-GTACCCAC-A----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTAC--AACCTC--AACT----TTTAC---CGG-AATA------C------CTA------T--ACAT----GT----------A-AGTACA----C------T--AT--T----A---------A-------GC-----ATGC--A--AAATCA--AAAGCCACCAG--G-------CAGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 11 666666666666666666666666666666666666 1111 111 11111111 11111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111 111111111111 44444444444444444444444444444 3333333333333 11111 111111 11111 11 1111
lowQualScore : 0 666 3 33 3 555555555555555555555555555555555555 11 0 0000 55 777 6 0 3 33333333 6 77777 2 0 3 5 9999 3 0 0 0 0 3 2 3 1 11111 44 6666 555 1 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 44 44 44 77 999999999 44 3 0 2 0 666 3 666666666666 44 77777777777777777777777777777 2 4 2222222222222 55 4 6 4 77777 5 77 999999 3 2 1 0 2 4 4 4 66 0 8888 3 5 0 1 0 22222 66 0 00 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . ... . .. . .................................... .. . .... .. ... . . . ........ . ..... . . . . .... . . . . . . . . . ..... .. .... ... . . ............................................................................................. .. .. .. .. .. ......... .. . . . . ... . ............ .. ............................. . . ............. .. . . . ..... . .. ...... . . . . . . . . .. . .... . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 5 444 6 77 6 000000000000000000000000000000000000 77 9 7777 55 777 7 4 1 44444444 2 77777 5 8 1 7 6666 7 2 6 7 2 1 2 4 0 88888 22 1111 000 7 9 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 22 66 66 33 111111111 66 6 4 3 5 333 3 999999999999 77 11111111111111111111111111111 8 0 1111111111111 55 4 5 4 33333 7 99 222222 5 0 0 2 8 2 4 4 11 9 2222 1 0 1 4 7 55555 99 2 99 7 3 7 7 7 2 7 44444 0 00 0000 0 4 88 4 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNAT--ACAT------GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A-----------A--------T---GAA-ATATATN-----------ATCACA--AGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNAT--ACAT------GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A-----------A--------T---GAA-ATATATN-----------ATCACA--AGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TACT-AA-C-ATAAACA-G---------ATA-------------TGTACA---GAACAGAAAAGTCACATATA--CATAC--GCA--CATATATATTGA-T-TACCTTCAAAACTA-TCCA---A----TTTT-CAA-----TAA-T-AGTT-GAACCCAAT----AATTGAGTCTTGACGAGAAG-A---------CTAAAACTAGGTAC--GAACTC--AACT----TGTAC---T-A-AATA--------------AAT--AC--------------------A-ATTATA----C------T--AG--T----------------AC-------ACATAC--A--A--AATCA--AAAGC
gi|1 : cgTCGG-CTGAAGACATACACGC------A----CTG-GA----A-----------A--------C---GAAGATCTGTCTGT--------ACC-CA--A--CAATTATTCTT--GTTG-A-A---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttctACAGTAAAGT-ACAAA-AGGTACAT--------ATACATACC-A-TGTACATGCAAGAAAA-TACA---AAAATCTTT-CAA------AATA-AGTTTGTACCCATT----AATC-AATCTTG--------------------TTGAACTAGGCACATGA--TC--GACC----TGTAC---TGA-AATA------C--------AT--A-AT------G-----------A-AATAAA----G------T--AG--aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TACA-AGAC-ATATACA---------------------------T---------AACAGACAGGTAACATATATATAC----GCA--CATACATATTGA-T-TACATGCAAATCTA-TACA---A----TTTT-CAA-----TAGCT-GGTT-GTACCTACT----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTCATAATTAAAGTGTACTGTTGA-AATA------C------AAAA--ACAT------cttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTAT--GTACTC--GTCA----TGTAC---TGA-AATG-------------AAAT--ATAT------GTATTG------A-AATA-------------T--AG--T-----------------A-------GCATAC--A--
gi|12 : ----TGTAT---TGA-AATATAGTAGC------ATAC--ACGT------GTTACTTCTTTGA-AATACG----C------TGAAG--TCGTT------------AC-------GTGTACTGA--A--AAT-A--GAAGC--TCAG-TTTTCCAAC--AATTTGTAATCAACACAT-GATCCTGTCAAATCAAAACACAAGTCTC--------TGCATAATCA-------A----cgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatataAC--A--A--AATCA--AAAGCCATAAG-G-------C--AGTTTGTACCCAGTA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAGGTAATGG-------A----CTG-GT----A-----------A--------T---G---ATGTAAC-----------ATTACA--aa
gi|13 : cTT-GTACCCAGT----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAG--G----T--AA------TGGAC---TGGTAATG---------------------AT------GT----------A----ACA----T------T--A------------------------------CATAC--ACGA--ACTTA--AAAG---GAAGCT-------C--AGATTGTACCCGCCA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGCATtacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTCA-TG-C-ATATACA-A---------A-------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CACATGCAAAACTA-TACAC--A----TTTT-CAA-----TAACT-ATTT-GCAACCACTGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TACATGCAAAACTG-TACA---C----TTTT-CAA-----TTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TACA-AA-T-ATATACA-ACACTAAAATATA-------------TGCATATAAGAACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TACATAAAG-A-ATA-G-A---------ACA-------------
gi|2 : ttgcggaAAAACTAACACAGGCA----CTTC-CAA-----T---T--GTT-GTACCCACT----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGC--AACCTT--AACA----TGTAC---TAA-AATA------C------CCAT--ACAT------GT----------A-----CA----C------C--AG--T----------------AA-------GCATAC--A--A--AATCA--AAA-CCATATG-A-------C--AGTTTATACCCGGTA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATACGTAATGA-------A----ATACAT----A-----------C--------T---GCA-ATAAATT-----------ATCACA--AGTCACTT-TTCTTAGGCTGAA-TACATT-GCA--TAC-ATGCACAGgtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------AAAT-CAAAACCA-TATG---A---------CAG-----T-------TT-ATACCCGGT----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATAC-------------------GTAA---TGA-AATA------CATACTGCAAT--AAATTATC--AC----------A-AGT-CA----CTTTTCTT--AGGCT----------------GAATACATTGCATAC--A--T--GCACAGGAAAG---TAAGCT-------C--AGTTTTGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAATCAGAATTTTA----CT--GT-------------------------T---GGA-ATATAAA-----------ACCATA--AGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTCTT--GTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaaATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC----AC-GCATATA-T---------ACA--------------GAACG---GAACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TACA-A--CTATATACA-G---------GCA-------------TATACG---GAACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TACATGCCAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACTT---AAT-GAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTAC--GGCCTC--AACT----TGTAC---TAA-AATA------C------CTAT--ACATTTACATGT----------A-AGTATA----C------A--AG--T----------------AA-------GCATAC--A--A--ACTCA--TAAGACATAAG-T-------C--AGCT-GTACTTAGTA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTACATAATCC-------G----CTG-GT----ATTTAAATACATA--------TT--GAA-ATACATT-----------ATCACA--AGTCACTT-TTCTTTGACTG-A-gcagggcaaactggagaagcattgct
gi|3 : -------C--AGTTTTAACCCGACA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAGTCA-------A----CTT-TC----A-----------C--------TGTCGGA-ATATA-------------ATAACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctGTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TAAACA---GAACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TACATGCACAACTA-TACA---C----TTTTTCAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTC--AACT----TGTAC---TAT-AATA------C------CAAT--ACAT------GT----------A-AGAACA----C------C--AG--T----------------AA-------GTATAC--A--A--AATCG--AAAGCCATAAG-A-------C--AGTTTGTACCCAGTA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTATATAATGG-------A----CTG-GT----A-----------A------------GAA-ATAAATG-----------ATCACA--AGTCACTT-TTCTTTGGTAG-A-T---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TACA-AATC-ATATACT-G---------ACA-------------TATACA---GGACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TACATGCAAAATTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GAACCCACT----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTAC--GATCTC--AACT----TGTAC---T-----TA--------------TAT--ACA--------T----------A-A----------------------------------------AA-------GTATAC--A--A--AATAT--AAAGCCATAAG-T-------C--AGTTTGTACCTAGTA-ATCGAGC---------CGAAACACAAGG------CTAGGTACGTACTCG-------G----CTG-GTGGTGA-----------AATACACATT---GAA-ATATATA-----------GTCACA--AGTCAATT-TTCTTTAGCTG-A-t
gi|5 : TT-A-TATACAT--AAAAGTA-TACA---A----AATA-TAAAGCCATAAGTCAGTTTGTACCTAGT----AATCGAGCC----------G-AAACACAAGGCT------AGGTAC--GTACTC--GGCT----GGTGG---TGA-AATA------C------ACATTGAAAT------AT----------ATAGT-CA----C------A--AG--TCAATTTTCTTTAGCTGAA-------G-ATAC--A--CGCAATGA--AAAG----AAG-G-------CTCAGTTTATACCCGACA-ATTAATCTCGTTGAATTGAAACA--ATGCTCAGACTAGCTGCATAATCA-------AAAGTTTA-CT----A-----------T--------T---GGA-ATATAAA-----------ACCATA--AGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-A-A---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TACATGCAAAACTA-TACA---C----TTTTTCAA-----TAACT-AGT----ACCCACT----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTAC--AGCCTC--AACT----TGTAC---CAA-AATA------C------CTTT--ACAT------GT----------A-AGTACATACAC------T--AG--T----------------AA-------GCATAC--A--A--AAACC--AAAGTCATGAG-A-------C--AGTTTGTACCCAGTA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TATATAATGG-------A----CTG-GT----A-----------A--------T---GAA-ATACATTTGAAATAAATTATCACT--AGTCACTT-TTCTTTGGTTG-A-T---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATACA-AA-C-ATAAACATA---------ACAGAAAGGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TACATGCAAAACTA-TAGA---C----TTTT-CAA-----TTACT-AGTT-GTACCCACA----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTAC--AACCTC--AACT----TTTAC---CGG-AATA------C------CTAT--ACAT------GT----------A-AGTACA----C------T--AT--T----------------AA-------GCATGC--A--A--AATCA--AAAGCCACCAG-G-------C--AGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 11 666666666666666666666666666666666666 1111 111 11111111 11111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111 111111111111 44444444444444444444444444444 3333333333333 11111 111111 11111 11 1111
lowQualScore : 0 666 3 33 3 555555555555555555555555555555555555 11 0 0000 55 777 6 0 3 33333333 6 77777 2 0 3 5 9999 3 0 0 0 0 3 2 3 1 11111 44 6666 555 1 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 44 44 44 77 999999999 44 3 0 2 0 666 3 666666666666 44 77777777777777777777777777777 2 4 2222222222222 55 4 6 4 77777 5 77 999999 3 2 1 0 2 4 4 4 66 0 8888 3 5 0 1 0 22222 66 0 00 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . ... . .. . .................................... .. . .... .. ... . . . ........ . ..... . . . . .... . . . . . . . . . ..... .. .... ... . . ............................................................................................. .. .. .. .. .. ......... .. . . . . ... . ............ .. ............................. . . ............. .. . . . ..... . .. ...... . . . . . . . . .. . .... . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 5 444 6 77 6 000000000000000000000000000000000000 77 9 7777 55 777 7 4 1 44444444 2 77777 5 8 1 7 6666 7 2 6 7 2 1 2 4 0 88888 22 1111 000 7 9 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 22 66 66 33 111111111 66 6 4 3 5 333 3 999999999999 77 11111111111111111111111111111 8 0 1111111111111 55 4 5 4 33333 7 99 222222 5 0 0 2 8 2 4 4 11 9 2222 1 0 1 4 7 55555 99 2 99 7 3 7 7 7 2 7 44444 0 00 0000 0 4 88 4 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNAT--ACAT------GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A-----------A--------T---GAA-ATATATN-----------ATCACA--AGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNAT--ACAT------GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A-----------A--------T---GAA-ATATATN-----------ATCACA--AGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TACT-AA-C-ATAAACA-G---------ATA-------------TGTACA---GAACAGAAAAGTCACATATA--CATAC--GCA--CATATATATTGA-T-TACCTTCAAAACTA-TCCA---A----TTTT-CAA-----TAA-T-AGTT-GAACCCAAT----AATTGAGTCTTGACGAGAAG-A---------CTAAAACTAGGTAC--GAACTC--AACT----TGTAC---T-A-AATA--------------AAT--AC--------------------A-ATTATA----C------T--AG--T----------------AC-------ACATAC--A--A--AATCA--AAAGC
gi|1 : cgTCGG-CTGAAGACATACACGC------A----CTG-GA----A-----------A--------C---GAAGATCTGTCTGT--------ACC-CA--A--CAATTATTCTT--GTTG-A-A---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttctACAGTAAAGT-ACAAA-AGGTACAT--------ATACATACC-A-TGTACATGCAAGAAAA-TACA---AAAATCTTT-CAA------AATA-AGTTTGTACCCATT----AATC-AATCTTG--------------------TTGAACTAGGCACATGA--TC--GACC----TGTAC---TGA-AATA------C--------AT--A-AT------G-----------A-AATAAA----G------T--AG--aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TACA-AGAC-ATATACA---------------------------T---------AACAGACAGGTAACATATATATAC----GCA--CATACATATTGA-T-TACATGCAAATCTA-TACA---A----TTTT-CAA-----TAGCT-GGTT-GTACCTACT----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTCATAATTAAAGTGTACTGTTGA-AATA------C------AAAA--ACAT------cttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTAT--GTACTC--GTCA----TGTAC---TGA-AATG-------------AAAT--ATAT------GTATTG------A-AATA-------------T--AG--T-----------------A-------GCATAC--A--
gi|12 : ----TGTAT---TGA-AATATAGTAGC------ATAC--ACGT------GTTACTTCTTTGA-AATACG----C------TGAAG--TCGTT------------AC-------GTGTACTGA--A--AAT-A--GAAGC--TCAG-TTTTCCAAC--AATTTGTAATCAACACAT-GATCCTGTCAAATCAAAACACAAGTCTC--------TGCATAATCA-------A----cgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatataAC--A--A--AATCA--AAAGCCATAAG-G-------C--AGTTTGTACCCAGTA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAGGTAATGG-------A----CTG-GT----A-----------A--------T---G---ATGTAAC-----------ATTACA--aa
gi|13 : cTT-GTACCCAGT----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAG--G----T--AA------TGGAC---TGGTAATG---------------------AT------GT----------A----ACA----T------T--A------------------------------CATAC--ACGA--ACTTA--AAAG---GAAGCT-------C--AGATTGTACCCGCCA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGCATtacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTCA-TG-C-ATATACA-A---------A-------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CACATGCAAAACTA-TACAC--A----TTTT-CAA-----TAACT-ATTT-GCAACCACTGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TACATGCAAAACTG-TACA---C----TTTT-CAA-----TTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TACA-AA-T-ATATACA-ACACTAAAATATA-------------TGCATATAAGAACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TACATAAAG-A-ATA-G-A---------ACA-------------
gi|2 : ttgcggaAAAACTAACACAGGCA----CTTC-CAA-----T---T--GTT-GTACCCACT----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGC--AACCTT--AACA----TGTAC---TAA-AATA------C------CCAT--ACAT------GT----------A-----CA----C------C--AG--T----------------AA-------GCATAC--A--A--AATCA--AAA-CCATATG-A-------C--AGTTTATACCCGGTA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATACGTAATGA-------A----ATACAT----A-----------C--------T---GCA-ATAAATT-----------ATCACA--AGTCACTT-TTCTTAGGCTGAA-TACATT-GCA--TAC-ATGCACAGgtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------AAAT-CAAAACCA-TATG---A---------CAG-----T-------TT-ATACCCGGT----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATAC-------------------GTAA---TGA-AATA------CATACTGCAAT--AAATTATC--AC----------A-AGT-CA----CTTTTCTT--AGGCT----------------GAATACATTGCATAC--A--T--GCACAGGAAAG---TAAGCT-------C--AGTTTTGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAATCAGAATTTTA----CT--GT-------------------------T---GGA-ATATAAA-----------ACCATA--AGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTCTT--GTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaaATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC----AC-GCATATA-T---------ACA--------------GAACG---GAACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TACA-A--CTATATACA-G---------GCA-------------TATACG---GAACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TACATGCCAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACTT---AAT-GAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTAC--GGCCTC--AACT----TGTAC---TAA-AATA------C------CTAT--ACATTTACATGT----------A-AGTATA----C------A--AG--T----------------AA-------GCATAC--A--A--ACTCA--TAAGACATAAG-T-------C--AGCT-GTACTTAGTA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTACATAATCC-------G----CTG-GT----ATTTAAATACATA--------TT--GAA-ATACATT-----------ATCACA--AGTCACTT-TTCTTTGACTG-A-gcagggcaaactggagaagcattgct
gi|3 : -------C--AGTTTTAACCCGACA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAGTCA-------A----CTT-TC----A-----------C--------TGTCGGA-ATATA-------------ATAACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctGTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TAAACA---GAACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TACATGCACAACTA-TACA---C----TTTTTCAA-----TAACT-AGTT-GTACCCACT----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTC--AACT----TGTAC---TAT-AATA------C------CAAT--ACAT------GT----------A-AGAACA----C------C--AG--T----------------AA-------GTATAC--A--A--AATCG--AAAGCCATAAG-A-------C--AGTTTGTACCCAGTA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTATATAATGG-------A----CTG-GT----A-----------A------------GAA-ATAAATG-----------ATCACA--AGTCACTT-TTCTTTGGTAG-A-T---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TACA-AATC-ATATACT-G---------ACA-------------TATACA---GGACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TACATGCAAAATTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GAACCCACT----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTAC--GATCTC--AACT----TGTAC---T-----TA--------------TAT--ACA--------T----------A-A----------------------------------------AA-------GTATAC--A--A--AATAT--AAAGCCATAAG-T-------C--AGTTTGTACCTAGTA-ATCGAGC---------CGAAACACAAGG------CTAGGTACGTACTCG-------G----CTG-GTGGTGA-----------AATACACATT---GAA-ATATATA-----------GTCACA--AGTCAATT-TTCTTTAGCTG-A-t
gi|5 : TT-A-TATACAT--AAAAGTA-TACA---A----AATA-TAAAGCCATAAGTCAGTTTGTACCTAGT----AATCGAGCC----------G-AAACACAAGGCT------AGGTAC--GTACTC--GGCT----GGTGG---TGA-AATA------C------ACATTGAAAT------AT----------ATAGT-CA----C------A--AG--TCAATTTTCTTTAGCTGAA-------G-ATAC--A--CGCAATGA--AAAG----AAG-G-------CTCAGTTTATACCCGACA-ATTAATCTCGTTGAATTGAAACA--ATGCTCAGACTAGCTGCATAATCA-------AAAGTTTA-CT----A-----------T--------T---GGA-ATATAAA-----------ACCATA--AGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-A-A---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TACATGCAAAACTA-TACA---C----TTTTTCAA-----TAACT-AGT----ACCCACT----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTAC--AGCCTC--AACT----TGTAC---CAA-AATA------C------CTTT--ACAT------GT----------A-AGTACATACAC------T--AG--T----------------AA-------GCATAC--A--A--AAACC--AAAGTCATGAG-A-------C--AGTTTGTACCCAGTA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TATATAATGG-------A----CTG-GT----A-----------A--------T---GAA-ATACATTTGAAATAAATTATCACT--AGTCACTT-TTCTTTGGTTG-A-T---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATACA-AA-C-ATAAACATA---------ACAGAAAGGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TACATGCAAAACTA-TAGA---C----TTTT-CAA-----TTACT-AGTT-GTACCCACA----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTAC--AACCTC--AACT----TTTAC---CGG-AATA------C------CTAT--ACAT------GT----------A-AGTACA----C------T--AT--T----------------AA-------GCATGC--A--A--AATCA--AAAGCCACCAG-G-------C--AGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
blockSeqs : ACA T GA T TAACAGAAAGGTNNNNNNNNNNNN GG CCAG AG GA G A AAAAT T AGCCA A C T GTTC C A A G A ATGA AT AAAG TGT G T CATACTGCAATAAATTATCACAAGTCACTTTTCTTAGGCTGAATACATT TG CG GC GG CC CT TC . A GAA G GAATTTTA AC ATTTAAATACATATT C . TTTGAAATAAATT TT . A A TACA T . . A G A G C A G TA TTTT C A T GTATA AT GT A T A A A CTGTT T GA AGAA A T TG G C
blockSeqs : . . AA . ACACTAAAATATATGCATATAA TA AA . AA A . GGCA T . A . T T T . G A C AAC . . . G . TAGTAGCATACACGTGTTACTTCTTTGAAATACGCTGAAGTCGTTAC . . . . CC CT . . T AGA C AAAGT G GGTGAAATACACATT G . AC . . T . AT . . . A A T C T . . . TT T . T . . AG . . A A A TTTTT . AC . A A CC T A
blockSeqs : . . AA . GGCATATACG TT TA . AA . . CA . . A . . . C . G C A GTA . . . G . CACATTGAAATATATAGTCACAAGTCAATTTTCTTTAGCTGAA . . . . AC G . . A GAA A A G ACTGTC A . TT . . T . AT . . . A A A A T . . . CA T . T . . CG . . A A G CTTT . TC . G T TG C C
blockSeqs : . . AA . AACATAAACA CG CA . AA . . A . . T . . . T . G G A AAC . . . G . CCTATACATTTACATGTAAGTATACAAGTAA . . . . CC A . . T AGA C A T AAT G . AA . . T . T . . . T A T C T . . . CC T . T . . CT . . A . . G . AA . C T CA T C
blockSeqs : . . AT . GACATATACA TG CG . GA . . C . . A . . . T . A G C GGC . . . G . CCTTTACATGTAAGTACATACACTAGTAA . . . . CC T . . A GAA G A G ACT A . TT . . T . A . . . . A C A T . . . TT T . . . . TT . . T . .
blockSeqs : . . G . TACAGAACG TG NN . AA . . A . . A . . . C . G A A AAC . . . A . CCAATACATGTAAGAACACCAGTAA . . . . TC A . . T AGA C G G ATT A . TG . . T . T . . C T G C . . . AT C . . . . . . . .
blockSeqs : . . A . AA TA T . A . . A . . A . . . T . A G A GAT . . . G . CCTATACATGTAAGTACACTATTAA . . . . CC T . . A GAA G A A AAT G . TA . . . . . G . . . . . C . . . .
blockSeqs : . . A . T TA G . A . . C . . A . . . T . A A C GTA . . . A . AAATATATGTATTGAAATATAGTA . . . . . G . . T AGA G A G AA A . AA . . . . . .
blockSeqs : . . A . . NN G . A . . A . . A . . . C . T A C AGC . . . A . CCCATACATGTACACCAGTAA . . . . . A . . A . C G . T . . . .
blockSeqs : . . . . . . . A . . T . . . T . G A A AAC . . . G . ATGTAACATTA . . . . . G . . . . . A
blockSeqs : . . C . . . . . . T . A C C G . . . A . TATACATAAAA . . . . . . .
blockSeqs : . C . . . . . . . . A A C . . . . G . . .
blockSeqs : . . . . . . .
blockSeqCons : A* TG CC G******** GGA A*********** NN*********** ** ******
originalCons : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AAAC-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNAT--ACAT------GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAG-N-------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A-----------A--------T---GAA-ATATATN-----------ATCACA--AGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
finalCons : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TACA-AA-C-ATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TACATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACT----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNAT--ACAT------GT----------A-AGTACA----C------T--AG--T----------------AA-------GCATAC--A--A--AATCA--AAAGCCATAAGG--------C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCGA-----------CTG-GT----A-----------A--------T---GAA-ATATANN-----------ATCACA--AGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA
Alignments
lowQualScore : 777777777777777777777777777777777777 11111 11111111 11111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111 11111 111111111111 4444444444444444444444 2222222222222 11111 111111 11111 11 1111
lowQualScore : 0 666 3 888 222222222222222222222222222222222222 0 2 999 55 66666 44 0 2 11111111 5 77777 1 1 5 5 22 6666 2 3 1 1 2 1 2 1 33333 33 5555 444 2 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 33 55555 44 88 4444444444 66666 44 3 0 2 0 666 3 666666666666 44 7777777777777777777777 2 4 8888888888888 4 6 4 77777 5 77 999999 3 2 1 0 2 4 4 4 66 0 8888 3 5 0 1 0 22222 66 0 00 0 0 5 5 1 3 5 99999 8 22 7777 1 1 22 1 5
lowQualScore : . ... . ... .................................... . . ... .. ..... .. . . ........ . ..... . . . . .. .... . . . . . . . . ..... .. .... ... . . ........................................................................................................... . .. ..... .. .. .......... ..... .. . . . . ... . ............ .. ...................... . . ............. . . . ..... . .. ...... . . . . . . . . .. . .... . . . . . ..... .. . .. . . . . . . . ..... . .. .... . . .. . .
lowQualScore : 5 444 6 444 666666666666666666666666666666666666 5 2 555 00 44444 22 8 9 88888888 7 11111 7 9 7 3 99 1111 7 0 8 3 9 4 5 0 77777 99 7777 777 6 7 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 99 00000 22 55 6666666666 99999 66 6 4 3 5 333 3 999999999999 77 1111111111111111111111 8 0 0000000000000 4 5 4 33333 7 99 222222 5 0 0 2 8 2 4 4 11 9 2222 1 0 1 4 7 55555 99 2 99 7 3 7 7 7 2 7 44444 0 00 0000 0 4 88 4 0
consensus : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TAC-AA-A-CATATACA-G---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TA--CATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCAC-T----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNA------T------ACAT----GT----------A-AGTACA----C------T--------AG--T----------------AA-------GCAT-AC--A--A--AAT--CA--AAAGC-CA------TAAG-N---C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A---A---------T---GAA-ATATATN-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
Reference ( family-3268 ) : ATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGCGACATGTTATAA---TAC-AA-A-CATATACA-A---------ACA-------------TGNACG---GAACAGAAAGGTCACATATATGTACAC--GCA--CATACATATT-A-T-TA--CATGCAAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCAC-T----AATCGAGTCTTGACGAGAAG-AAACACAAGGCTCGAACTNGGTAC--GACCTC--AACT----TGTAC---TGA-AATA------C------CNA------T------ACAT----GT----------A-AGTACA----C------T--------AG--T----------------AA-------GCAT-AC--A--A--AAT--CA--AAAGC-CA------TAAG-G---C--AGTTTGTACCCGGCA-ATCGATCTTGTCGAANCGAAACACAAGGCTCGGACTAGNTACATAATCG-------A----CTG-GT----A---A---------T---GAA-ATATANN-----------ATCACAAGTCACTT-TTCTTTGGTTG-A-T---TT-GAA--CACAATGCTCAGACTA------GCTGCATAATCAAAATTTTACTGTTGGAATATAATACCATAAGTCACCTTCATTTAACTNAAGTAATTACATGNTAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACT--GTTTCACTATTATCAGCA--CTTGGACGATAATGTTTAAG-CCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAATTGCCCAT-----AAACGC--CTGCGTTCACGTTCATTGCACGCACAAAACAATATTTGATGT-ATCA-TAAGGTTGTCAACCTTAAAGGTACACTTTNTGCA-TATATCGGCTGTATGGTAGGATAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACNGGTACTTACGACCGAGCCTCCAAAGAACACAAGGGCCTTGAAAGTCAA
gi|1 : TTATTACCTCCACTGAAGGGAGATCGACTTGTAATAA---TAC-TA-A-CATAAACA-G---------ATA-------------TGTACA---GAACAGAAAAGTCACATATA--CATAC--GCA--CATATATATTGA-T-TA--CCTTCAAAACTA-TCCA---A----TTTT-CAA-----TAA-T-AGTT-GAACCCAA-T----AATTGAGTCTTGACGAGAAG-A---------CTAAAACTAGGTAC--GAACTC--AACT----TGTAC---T-A-AATA--------------AA------T------AC------------------A-ATTATA----C------T--------AG--T----------------AC-------ACAT-AC--A--A--AAT--CA--AAAGC-
gi|1 : cgTCGG-CTGAAGACATACACGC------A----CTG-GA----A---A---------C---GAAGATCTGTCTGT--------ACC-CAA--CAATTATTCTT--GTTG-A-A---TT-GAAAACACAATGTTCAGACTACATGTAACTGCATAATCAAAATTTTACTGTTGGAATATAATACTATAAGTCACCTTCAATTAACTTAAGTAATTACCTGATAAGTTTATGGCATGCTTTCACAGTAGC-TAACA-TAACC--GTTTCATTATTATCAGCA--CTTGGATGATAATGTTTAAG-TCCTGTCAGAAGGTCTATAATTTGATAGGCAGGCGGTTGACTTATCAGTCAATTGTAGCACTGTACGCCAATATGTCCAATAATTATTGCCCGC-----AAACGC--CTGCGTTCACGTTCATTGCTATCGCAAAACAATATTTAATGT-ATCA-TAAGGTTGTCAACATTAAAGGTACACATTATGCA-TATATCGGCTGCATGATAGGATAAGAGATTGCAT----ATTATCTAAACCGCATTGAAACAAAATATTTTAACAGAATTGTATATACGACAAAGCCTC---AGGACACAGGGGCCTGGAAAGTCAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttcttcggctgaagacatacacgcactggaaacgaagatctgtctgtacccaacaattattcttgttgaattgaaaacacaatgttcagactacatgtaactgcataatcaaaattttactgttggaatataatactataagtcaccttcaattaacttaagtaattacctgataagtttatggcatgctttcacagtagctaacataaccgtttcattattatcagcacttggatgataatgtttaagtcctgtcagaaggtctataatttgataggcaggcggttgacttatcagtcaattgtagcactgtacgccaatatgtccaataattattgcccgcaaacgcctgcgttcacgttcattgctatcgcaaaacaatatttaatgtatcataaggttgtcaacattaaaggtacacattatgcatatatcggctgcatgataggataagagattgcatattatctaaaccgcattgaaacaaaatattttaacagaattgtatatacgacaaagcctcaggacacaggggcctggaaagtcaaaagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|10 : cgttattacctccactgaagggagatcgacttgtaataatactaacataaacagatatgtacagaacagaaaagtcacatatacatacgcacatatatattgattaccttcaaaactatccaattttcaataatagttgaacccaataattgagtcttgacgagaagactaaaactaggtacgaactcaacttgtactaaataaatacaattatactagtacacatacaaaatcaaaagcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacttttctACAGTAAAGT-ACAAA-AGGTACAT--------ATACATACC-A-TGTA--CATGCAAGAAAA-TACA---AAAATCTTT-CAA------AATA-AGTTTGTACCCAT-T----AATC-AATCTTG--------------------TTGAACTAGGCACATGA--TC--GACC----TGTAC---TGA-AATA------C--------A------T------A-AT----G-----------A-AATAAA----G------T--------AG--aagtggagaagcattgttcaatcacacattctttcaaatgattgctcttgttcacatcgagttacatggcattgaagttctgactttcacgtgtcttttgacggaaaattattaaattctacgaattcctttat
gi|11 : aactcgtcaattttgtaacatGATAGATATCTTTATTAT-TCAACTGAAGGGAGAGCGACATGTTACTA---TAC-AAGA-CATATACA---------------------------T---------AACAGACAGGTAACATATATATAC----GCA--CATACATATTGA-T-TA--CATGCAAATCTA-TACA---A----TTTT-CAA-----TAGCT-GGTT-GTACCTAC-T----TATTAAGTCTTGACAAGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTCATAATTAAAGTGTACTGTTGA-AATA------C------AAA------A------ACAT----cttacgccatcttactgtagttgttatgtacgcgccctcaaaacaactatattttatacacaaaacctaatattgtcgaatcgaaacat
gi|12 : AAGGCTTCAATTAGGTAT--GTACTC--GTCA----TGTAC---TGA-AATG-------------AAA------T------ATAT----GTATTG------A-AATA-------------T--------AG--T-----------------A-------GCAT-AC--A--
gi|12 : ----TGTAT---TGA-AATATAGTAGC------ATA------C------ACGT----GTTACTTCTTTGA-AATACG----C------TGA------AG--TCGTT------------AC-------GTGT-ACTGA--A--AAT---A--GAAGCTCAGTTTTCCAA------C--AATTTGTAATCAACACAT-GATCCTGTCAAATCAAAACACAAGTCTC--------TGCATAATCA-------A----cgtgttacttctttgaaatacgctgaagtcgttacgtgtactgaaaatagaagctcagttttccaacaatttgtaatcaacacatgatcctgtcaaatcaaaacacaagtctctgcataatcaaaa
gi|13 : aaggcttcaattaggtatgtactcgtcatgtactgaaatgaaatata-AC--A--A--AAT--CA--AAAGC-CA------TAAG-G---C--AGTTTGTACCCAGTA-ATCGATCTTATCAAAACGAAACACAAAGCTCGAACTAGGTAGGTAATGG-------A----CTG-GT----A---A---------T---G---ATGTAAC-----------ATTACAaa
gi|13 : cTT-GTACCCAG-T----AATCGA-TCTTATCAAAACG-AAACACAAAGCTCGAACTAGGTAG--G----T--AA------TGGAC---TGGTAATG-------------------------------AT----GT----------A----ACA----T------T--------A------------------------------CAT-AC--ACGA--ACT--TA--AAAG----------GAAGCT---C--AGATTGTACCCGCCA-ATTAATCTTGTTGAATTTAAACACTATGCGCAGACTAGCTGCATtacacgaacttaaaaggaagctcagattgtacccgccaattaatcttgttgaatttaaacactatgcgcagactagctgcatgtcaa
gi|14 : cacaaaatcaaaagccataaggcagtTATTACCTCCGTTGAAGAGAGAACTGCATATTACAA---TTC-AT-G-CATATACA-A---------A-------------------------------AAAATCACACATATTTATAA--ACA--CATGCATATT-AAT-CA--CATGCAAAACTA-TACAC--A----TTTT-CAA-----TAACT-ATTT-GCAACCAC-TGTTCAATTGCGTCTTGACAAGACG-AATCACAAGGCTCGgtcaa
gi|15 : atataAGATAGATATCTTTATTACCTCCACTTAAGGGAGAGCGACATGTTATAA---TACAAA-A-CATATACA-------------------------------------AACAGAAAGGTCACACACACGCACAT--ATA--TATACATATTAA-T-TA--CATGCAAAACTG-TACA---C----TTTT-CAA-----TTACT-AGTT-GTACC
gi|16 : GGATATGATAACATAGGTCACTTTCCTTTAGACAAAGTAGTGACGTGGAACGTTTATGGAATGCGTTCACAGTAGCATCACAGTAGCTTATTTTCATTACTATCTTCC--TTTGGACAATAGGATTTAAA-CCCAGTCAGCAGGtg
gi|17 : ATATCTTTATTATCTCCACTTAGGCAAAAGCG-----TCATAA---TAC-AA-A-TATATACA-ACACTAAAATATA-------------TGCATATAAGAACAGAAAAGTCACATAgtt
gi|18 : tTGTCCAATAATAGTTGCCCATGTATAAGACAC--CAGCGTCCAGTTTCACTGTCCGCACAAAACAATGTTTGATGT-AATATTAAGGT
gi|19 : ATAGATATATCTATTCATTACCCCCACATAATGGAGAACGACATGTTATGA---TAC-A
gi|2 : ttgcggaAAAACTAACACAGGCA----CTTC-CAA-----T---T--GTT-GTACCCAC-T----AAATGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTGC--AACCTT--AACA----TGTAC---TAA-AATA------C------CCA------T------ACAT-------------------GTACA----C------C--------AG--T----------------AA-------GCAT-AC--A--A--AAT--CA--AAA-C-CA------TATG-A---C--AGTTTATACCCGGTA-ATCGATCTTGTCGAAACGAAACACAAGGCTCGAACTAGATACGTAATGA-------A----ATACAT----A---C---------T---GCA-ATAAATT-----------ATCACAAGTCACTT-TTCTTAGGCTGAA-TACATT-GCA--TAC-ATGCACAGtaaagaatagaacagtcac
gi|2 : tCATACATGTACACCAGTAAGCATACA----------A--AAT-CAAAACCA-TATG---A---------CAG-----T-------TT-ATACCCGG-T----AATCGA-TCTTGTCGAAACG-AAACACAAGGCTCGAACTAGATAC-------------------GTAA---TGA-AATA------CATACTGCAA------T------AAATTATCAC----------A-AGT-CA----CTTTTCTT--------AGGCT----------------GAATACATTGCAT-AC--A--T--GCA--CAGGAAAG----------TAAGCT---C--AGTTTTGATCAGACA-ACTAATCTTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAATCAGAATTTTA----CT--GT------------------T---GGA-ATATAAA-----------ACCATAAGCCACCT-Tgaaagtaagctcagttttgatcagacaactaatcttgttgaatttaaacacaatgctcagactagctgcataatcagaattttactgttggaatataaaaccataagccaccttcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|2 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaataccTCTT--GTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAATCAGAATTTTACTGTTGGAATATAAAACCATAAGCCACCTTCATTAAACTTACGTAATTACATGCTAAGTTTATGGCATGTTTT-ACAGTAGC-TAACA-TAACT--ATTTAACTGTTATCAACA--C-----------------AG-TCCGGTCAGAAGGTCTATAATTTGATAGGCAGGTTATTGACTTATTAATCTATCAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTTCGTTCAAGTTCATTGCAC----AAAAAAAAAGTTGATGT-ATCA-TAAGGTTGTCAACCTGAAGGATACACTGTTTGCA-TATGTCAGATGTACGGTAGGATAAGACATTGCAT----ATTATCTTAACCGCACTTAAGCAATACATTTTCACAGACAGGCACTTACGACTGAGCGTCCAAATAACACAAGGGCCTTGAAAGTCAcattaaacttacgtaattacatgctaagtttatggcatgttttacagtagctaacataactatttaactgttatcaacacagtccggtcagaaggtctataatttgataggcaggttattgacttattaatctatcaaagcactgtacgctaatatgtccaataataactacccataaacgccttcgttcaagttcattgcacaaaaaaaaagttgatgtatcataaggttgtcaacctgaaggatacactgtttgcatatgtcagatgtacggtaggataagacattgcatattatcttaaccgcacttaagcaatacattttcacagacaggcacttacgactgagcgtccaaataacacaagggccttgaaagtcagaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|20 : taaaactaacacaggcacttccaattgttgtacccactaaatgagtcttgacgagaagaaacacaagactcaaactcggtgcaaccttaacatgtactaaaatacccatacatgtacaccagtaagcatacaaaatcaaaaccatatgacagtttatacccggtaatcgatcttgtcgaaacgaaacacaaggctcgaactagatacgtaatgaaatacatactgcaataaattatcacaagtcacttttcttaggctgaatacattgcatacatgcacaggaaagtaagctcagttttgatcagacaactaaATATCTAAACAACCTCCACTGAAGGGAGAGCGGTATGATATAA---TAC-AC-G-CATATAT------------ACA--------------GAACG---GAACGGAAgaggcggagaagcattgttcaatcgataatgtttgacacattctctcaaaacattgtttttgttcatatttagttacatgacattaaggtacatgtactgacttccacgtgtcttttgacggaaaactagcaaattgtatgtattccttta
gi|21 : ctactgatTTTTCACGAACAGGTGCATTCGATCCAGCTTCAAAAGAATACAAGGGTGTTG
gi|3 : GATAGATATCTTTATTACCTGCACTAAAGGGAGAGCGACATGTTATAA---TAC-AA-C-TATATACA-G---------GCA-------------TATACG---GAACAGAAATATCGAATATATGTG-A---GCG--CATACATGTT-AAT-TA--CATGCCAAACTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GTACCCACTT----AAT-GAGTATTGATGAGAAA-AAACACACGACTCAAATGAGGTAC--GGCCTC--AACT----TGTAC---TAA-AATA------C------CTATACATTT------ACAT----GT----------A-AGTATA----C------A--------AG--T----------------AA-------GCAT-AC--A--A--ACT--CA--TAAGA-CA------TAAG-T---C--AG-CTGTACTTAGTA-ATCGATATTGTCGAAACGAAACAAAAGGCTTGAACTTGGTACATAATCC-------G----CTG-GT----ATTTAAATACATATT---GAA-ATACATT-----------ATCACAAGTCACTT-TTCTTTGACTG-A-gcagggcaaactggagaagcattgct
gi|3 : ATACATTTACAT--GTA--AGTATACA---A-G-TAAGCATACAAACTCA-TAAG---A----C------A-----TAAGTCAGCT-GTACTTAG-T----AATCGA-TATTGTCGAAACG-AAACAAAAGGCTTGAACTTGGTAC--ATAATC--CGCT----GGTAT---TTA-AATA------C------ATA------TTGAAATACATTATCAC----------A-AGT-CA----C------TTTTCTTTGAC--T----------------GAAG-----GCATTAC--A--T--ACTTGCACTGAA----A------TGGG-GGCTC--AGTTTTAACCCGACA-ATTAATATTGTTGAATTTAAACACAATGCTCAGACTAGCTGCATAGTCA-------A----CTT-TC----A---C---------TGTCGGA-ATATAAT-----------AACATTAGTCATCT-TCATTTaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattgttgaatttaaacacaatgctcagactagctgcatagtcaactttcactgtcggaatataataacattagtcatcttcatttaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|3 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctGTTG-AAT---TT-AAA--CACAATGCTCAGACTA------GCTGCATAGTCAAC-TTTCACTGTCGGAATATAATAACATTAGTCATCTTCATTTAACTAAAGTAATTACATGATAAG-TTGTGGCATGCTTTTACAGTAGC-TAATA-TAACT--TTTTCACTATTATCAGCATTTTTGGATGATAATGTTTAAG-CCCAGTCAGAAGGTCTAGAATTTAATAGGCAGTTGAT---CTTATCAATCTATTGAAGCACTGTACGCTAATATGTCTAATACTTATTGTCCAT--------------TGC---CA-----ACTGCATGCACAAAACAATATTTAATGT-ATCA-CAAGGTTATCAAGCTT-TAGGTACATTTTTTGCATTATATCGGCTGTATGGTAGACTACGAGATTGCAT----ATTATATTTACCAAACTGAAGCAATACAATTTCACAGACaactaaagtaattacatgataagttgtggcatgcttttacagtagctaatataactttttcactattatcagcatttttggatgataatgtttaagcccagtcagaaggtctagaatttaataggcagttgatcttatcaatctattgaagcactgtacgctaatatgtctaatacttattgtccattgccaactgcatgcacaaaacaatatttaatgtatcacaaggttatcaagctttaggtacattttttgcattatatcggctgtatggtagactacgagattgcatattatatttaccaaactgaagcaatacaatttcacagactaagact
gi|4 : gatagatatctttattacctgcactaaagggagagcgacatgttataatacaactatatacaggcatatacggaacagaaatatcgaatatatgtgagcgcatacatgttaattacatgccaaactatacaattttcaataactagttgtacccacttaatgagtattgatgagaaaaaacacacgactcaaatgaggtacggcctcaacttgtactaaaatacctatacatttacatgtaagtatacaagtaagcatacaaactcataagacataagtcagctgtacttagtaatcgatattgtcgaaacgaaacaaaaggcttgaacttggtacataatccgctggtatttaaatacatattgaaatacattatcacaagtcacttttctttgactgaaggcattacatacttgcactgaaatgggggctcagttttaacccgacaattaatattATAGATAGATATCTTTATTACCTCCACTGAAGGGAGAGTGACATATTATAA---TAC-AA-AACATATACA-A---------ACA-------------TAAACA---GAACTGAAAGGCCACATATATATACAC--ACA--CATACATATT-A-T-TA--CATGCACAACTA-TACA---C----TTTTTCAA-----TAACT-AGTT-GTACCCAC-T----AATTGAGTCTTGA--GGAAG-AAACACAAGACTCAAACTCGGAAC--AACCTC--AACT----TGTAC---TAT-AATA------C------CAA------T------ACAT----GT----------A-AGAACA----C------C--------AG--T----------------AA-------GTAT-AC--A--A--AAT--CG--AAAGC-CA------TAAG-A---C--AGTTTGTACCCAGTA-ATCGATATTGTCGAAACAAAACACAAGGCTCGAACTAGGTATATAATGG-------A----CTG-GT----A---A-------------GAA-ATAAATG-----------ATCACAAGTCACTT-TTCTTTGGTAG-A-T---TT-GAG--CACAATGCGCAGACTA------GCTGCATAATTAAAAATTTACTTTTGGAATATAATACCATTAGTCACCTTAATTTAACTTATGTACTTACATGCTAAGTTTATGGCATGCCTTTACAGCAGC-TAACA-TAATT--GTTTCACTATTATCAGTA--CATGGATGATAATGTTTAAGATCCGGTCAGACGGTCTCTAATTTGATAGGCAGGTGATTGACTTATCAATCTATTAAAGCACTGTACGCTAATATGTCCAATAATAACTACCCAT-----AAACGC--CTGCGTTCTCGTTCATTGCACGCACAAAACGATAATTGATGT-ACCA-TAAGGTTGTCAACCTTAAAGGTACA----GTGCA-TATATCGGCTGTATGATAGTCAAAGAGATTGCAT----ATTATCTTAACCGCACTGAAGCAATACATTTTCACAGACGGGTACTTACGACTGAGCCTCCAGAGAATACAAGGGCCTTGAAAACCAAtaagact
gi|5 : CTCCTCCGAAGGGAGAGTGACATGTTATAA---TAC-AA-ATCATATACT-G---------ACA-------------TATACA---GGACAGAAAGGTCTTAGATATATTTAC--GCA--CATACACATTGA-T-TA--CATGCAAAATTA-TACA---A----TTTT-CAA-----TAACT-AGTT-GAACCCAC-T----AACTGAGTCTTGACAAGAAGAAAACACAAGTCTCAAACTCGGTAC--GATCTC--AACT----TGTAC---T-----TA--------------TA------T------ACA------T----------A-A----------------------------------------------AA-------GTAT-AC--A--A--AAT--AT--AAAGC-CA------TAAG-T---C--AGTTTGTACCTAGTA-ATCGAGC---------CGAAACACAAGG------CTAGGTACGTACTCG-------G----CTG-GTGGTGA---AATACACAT-T---GAA-ATATATA-----------GTCACAAGTCAATT-TTCTTTAGCTG-A-t
gi|5 : TT-A-TATA--CAT--AAAAGTA-TACA---A----AATA-TAAAGCCATAAGTCAGTTTGTACCTAG-T----AATCGAGCC----------G-AAACACAAGGCT------AGGTAC--GTACTC--GGCT----GGTGG---TGA-AATA------C------ACA------TTG----AAAT----AT----------ATAGT-CA----C------A--------AG--TCAATTTTCTTTAGCTGAA-------G-AT-AC--A--CGCAAT--GA--AAAG-----------AAG-G---CTCAGTTTATACCCGACA-ATTAATCTCGTTGAATTGAAACA--ATGCTCAGACTAGCTGCATAATCA-------AAAGTTTA-CT----A---T---------T---GGA-ATATAAA-----------ACCATAAGTAACCT-Tagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcgttgaattgaaacaatgctcagactagctgcataatcaaaagtttactattggaatataaaaccataagtaaccttcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|5 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacGTTG-A-A---TT-GAA---ACAATGCTCAGACTA------GCTGCATAATCAAAAGTTTACTATTGGAATATAAAACCATAAGTAACCTTCATCTAACTCAAGTAATTACAT---AAGTGTATGGTATGCTATTACAGTTGC-TAACA-TAATT--GTTTCACTATTAACATCA--CCTAGATGATAATGTTTAAG-CCCGGTCAGAAAGTCTATGATTTGATAGGCAGGTGATTGAATTATCAGTTTATTAAACCATTATTCGCTAATATGCCCAATAATAATTGCCCGT-----AAACGC--CTGCGTTcatctaactcaagtaattacataagtgtatggtatgctattacagttgctaacataattgtttcactattaacatcacctagatgataatgtttaagcccggtcagaaagtctatgatttgataggcaggtgattgaattatcagtttattaaaccattattcgctaatatgcccaataataattgcccgtaaacgcctgcgtttc
gi|6 : ctcctccgaagggagagtgacatgttataatacaaatcatatactgacatatacaggacagaaaggtcttagatatatttacgcacatacacattgattacatgcaaaattatacaattttcaataactagttgaacccactaactgagtcttgacaagaagaaaacacaagtctcaaactcggtacgatctcaacttgtacttatatacataaaagtatacaaaatataaagccataagtcagtttgtacctagtaatcgagccgaaacacaaggctaggtacgtactcggctggtggtgaaatacacattgaaatatatagtcacaagtcaattttctttagctgaagatacacgcaatgaaaagaaggctcagtttatacccgacaattaatctcAGC-TAACA-TAACT--GTTTCACTATTATCAACA--TTTGTGTGATAATGTTCAAA-CCCGGTCAGAAGGTGTATAATTTGATAAG-AGGTG-----------AATTTATTTAAGATGTGTACACCAATCTGTTCAATAATAATTGCCCAT-----AAGCACATCGGCGTTCACTTTCATTGCACGCACAAAACATTTTTTTATTT-ATCA-T----------------AAGGTACACTTT-TGCA-TATATCGGCTGTATGGTAGAATAGGTGATTACAGAGAAATTATCTTAACCGCACTGAAACAATACATTTTCAAAGACCGGTACTTACAACCAAGGTTTCAATGAGCACAAGGGCCTTGtc
gi|7 : -T-TA--CATGCAAAACTA-TACA---C----TTTTTCAA-----TAACT-AGT----ACCCAC-T----GATTGAATCTTGACGAGAAG-AAACACAAGACTCCAACTCGGTAC--AGCCTC--AACT----TGTAC---CAA-AATA------C------CTT------T------ACAT----GT----------A-AGTACATACAC------T--------AG--T----------------AA-------GCAT-AC--A--A--AAA--CC--AAAGT-CA------TGAG-A---C--AGTTTGTACCCAGTA-ATCGATCTTGTCGAAACGAAACACAAGG-----------TATATAATGG-------A----CTG-GT----A---A---------T---GAA-ATACATTTGAAATAAATTATCACTAGTCACTT-TTCTTTGGTTG-A-T---TTTGAG--CACAATGCTCAGACTA------GCTGCATAATCAAATTTTTACTGTTGAGATATAATACCATACGTCACCTTCAGTTAAATTACGTAATAACAAGATAGGTTTATGGCATGCTTTTACAGCAGC-TAACA-TTACA--GTTTCACTATTATCAGcatatcatatatggagaagaattgctcaatggataaagtttgacacattctctcaatacattgttcttgttcatgttttgtaacctgtcgttgaaatactgacttccacttgctttgacggaaaactagcatattctatgagttccttaat
gi|8 : attggACAGATAGATATCTTTATTA----------AGAGACAA-AACATAT-ACAAACATAC-AA-A-CATAAACATA---------ACAGAAAGGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNTT-AAT-TA--CATGCAAAACTA-TAGA---C----TTTT-CAA-----TTACT-AGTT-GTACCCAC-A----AATTGAGTCTTGACGAGAAG-AAACACAAGACTCAAACTCGGTAC--AACCTC--AACT----TTTAC---CGG-AATA------C------CTA------T------ACAT----GT----------A-AGTACA----C------T--------AT--T----------------AA-------GCAT-GC--A--A--AAT--CA--AAAGC-CA------CCAG-G---C--AGTTTGTACa
gi|9 : tATATAATAACACA-GTCACCTTCCTTTG-CTGAA----TT-CATGGTAAGTTTATGGAAAACTTTCATAGTAGC-TAACA-TAACT--GTTTCACAAGTATCAACC--ATTAGACAATAATGTTCAAG-CCCAGCCAATAGCTCTATAGTTTGATAAACAGGTGATTGACTTATCAATTTATTAAAG-------------TATGTTCAATAACAGATGCCCAT-----AAACGC--CGGCATTCATTTTCATCACACGCTTAAA--AATATTTGATGCAATC--TTAGCTTGTT-GCCTTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAAACAAACCAAAAACATTTGTCTCAAACATGCATACAAAACA