lowQualScore : 111111111111111111111111111 1111111111111
lowQualScore : 11 44444 333333 333333333333333333333333333 44444444444444444444444444 11111 111111 2222 11111 11111 111111 1111111 2222222222222
lowQualScore : 22 55555 888888 4 66 2 666666666666666666666666666 2 66666666666666666666666666 8888 77 6 6 44444 66 000000 4444 00000 55 777 55 55 3 7 44 99999 3 3 3 444444 4444444 0 4444444444444
lowQualScore : .. ..... ...... . .. . ........................... . .......................... .... .. . . ..... .. ...... .... ..... .. ... .. .. . . .. ..... . . . ...... ....... . .............
lowQualScore : 00 00000 000000 0 55 5 888888888888888888888888888 0 44444444444444444444444444 5555 77 7 7 22222 11 777777 2222 00000 55 000 00 00 6 3 66 22222 3 3 3 777777 4444444 7 0000000000000
consensus : NTTTTGTGATAT-TTCAAAATGTATTCANCNNAATTTNAAAAA--AATTATATTTCTTTTA-CCA--CTAAAAAN-ACNGTTCGGCTGAT---ACAC-TAATTT-ATG-T-T-TC--C--TT--CA--T---AAA---TT-----GTGTT--CAC---AAAA--T--AAA-A-A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AAC-------AATATTCTGGTTACGGTAATAAATG
Reference ( gi|3 ) : ATTCCGTGTTGTATTCAAAGAGAAATCATCTGAATTTGAAGAAACAATTATATTTCAATTA-CCATCCCAAAAAT-ACAACTCAGCTGAT---ATACCTGACTT-ATG-T-T-TC--C--TT--CA--T---AAC---TT-----GTGTT--CAC---AAAA--T--AAA-A-A--AAAAT-TCTTTGGCTG-AAACAAGCG-C-C--C-A-AAC-------AGTAT--TGGTT----T-ATAAATG
gi|4 : TTTTGTGATAT-TTCAAAATGTATTCAACACAATTTGAA---------ATATTTCTTTTAACCA--CTAAAAAC-ACTGTTT---TAAC---ACA----AATT-ATG-T-T-TTTTC--TT--CAAAT---AAAA--TT-----GTGTA--CAC---AGAA--T--CCA-A-A--AA----TCTTTGGCTG-AAACAAGCG-C-C--C-ATAAC-------A
gi|1 : tTCATCTGAATTTTAAAAA--AATTAT-------TTA-CCA--CCAAAAATGAC--TTCAGCTGAT---ACA--TGATTG-ATGAT-TGTC--C--TC--TA--A---AAA---TT-----GTGTT--TAC---AGAA--T--TCA-A-A--ATA---CCATTGGCTGTAAAAAAACA-A-C------AAC-------AGTa
gi|8 : tggggcaaatatttcagccaaaggtctttttgcttttttaaagtaatgtcggtggcatatttataaataagaaattgggagattaatcatttttaatcgttaattaaaatggtttacttttgaaaattggtaaagtaaaaaaaaaatatggccaaaaaaaaagttaaatggggaagatgaatgcaaattcagtgtctaaaaaatggccaatatttcgatattttgcaataacttctgattggtgtaaagtattgtgctaaaccgtacactatttctttgtataagcatttgacataaacttaatttctgcagaaaaaaatattgcaagaatttcatccatccacattttgcattgaatcaaattctttttgtgatatctaaaaaaacggcgtTTA-CCA--CTAAAAA---CAGTTCAACTGAT---ATAT---ACTTTATT-T-T-TC--C--CTTCCA--T---AAG---TT-----GTGCCAGCACCTAAAAA--TCTAAATA-A--AAAAT-T---TGGCTT-AAACGTGCG-C-T--C-A-AGC-------g
gi|6 : CTAAAAAG-ACAGTTAGACTAATTCTATAC-TAATAT-AAT-T-T-TC--A--TT--CA--A---AAT---TT-----GTGTT--CAT---AAAA--T--AAA-T-A--AAACT-TCTTTGGCTG-AGACAAGAG-CAC--C-A-AAC-------A
gi|9 : attgtcaaAAAAG-ACCGTTAGGCTGAT---A--CGTAACAC-ATA-TAT-TA--A--TA--TA--T---AAA---TT-----GTGAT--CAC---AAAA--T--AAA-ATA--AAAACACCTTTGGCTG-AAACAAGCG-T-CTTC---AAC-------AATAaa
gi|11 : tACATAATTC-ATG-T-T-TT--TGTTT--CA--TCAAAAT---TTTTGATGTGTT--CAC---AATA--T--CAA-A-A--ACA----CTTTGGCTG-AAACAGGCT-C-A--C-AGGAC-------AATAcaag
gi|16 : --C--TT--CA--T---CAA---TT-----GTTTA--CAC---AAAA--T--AAA-ATA--AAAAT-TTT---GCTG-AAACAAACA-T-C--C-act
gi|7 : gtttaaa--TT--CA--T---CAA---TT-----GTCTT--CAC---AGAAGCT--AAA-A-A--AACAA-CCTTTGGCTG-AAACAGACT-C-C--CTG-AACAAAATCTAGTATTCTGGTTACGGTAATAAATGtga
gi|17 : aacatggttatat--CA--T---AATCAGTT-----GTGTT--CCC---AAAA--T--CCC-A-A--AA--T-CCTTTGGTTG-AAACAAGTG-C-A--C-A-ttt
gi|15 : aaT-----GTGTT--CGC---AAAA--T--ATA-A-A--AAAAT-CTTTGGGCTG-AAACGTGGGCC-C--C-A-AAC-------AATAcaa
gi|14 : AAA--C--AAA-A-GCCAAAACACCTTTGGCTA-AAACAAGAG-C-C--T-ACAAC-------AATAatatataatatg
gi|19 : ttaaatacatgcaattgaactgaac--AAAAT--CTTTGGCTG-AAACACGCG-C-C--T-A-AA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GCACATGATTAAGCTAAACGTTTTTCGGCTTTTATAAATACAATGTTAGTGGTATTTTGAAAATTAGATATAGCGAGGTCATTCAATTTAGTGGCAAATAACATGTTTTACTTTTGAAATAATGTTTGGTAAAATAGATTTTACAGTAAAAATTGATTTTACATTGGAAAGTTCAACTAAACTTTCATGTCTTCAAAAGTGAAATCATTTAAATAAATGCAATAACTTTCGAATAGCGTGGTATGTTGTAATAAAACGTTCAGAATTCTTAATATCGGCATTTGACACATATCAAATCAAGTACTTTGCATAAATTTTGAGAG
Unaligned ( gi|5 ): TTACATTGCAACTAAATCATCTTTTTGTGATCATTCAATAAATTTTCAACTTAATTTGAAAAATAAACAATATTTTTTGCAATTAAAAATAACAGTTCAACTGATACATGTTTTATGGTTG
Unaligned ( gi|10 ): TTTAGCTAAATTAGAAAAATGATGTTTTTTTATTTACCACTGAGAAAGACTTCATCTGATACTTAGATTGTAGTTTTCCTCCAAAAATGTTCAAAAATTCACAA
Unaligned ( gi|12 ): TAAAAGCCAAAAGACCTTTGGCTCAAACATGCACCCTGAACAATGGTTCTGGTTCCAAGGTTAATAAACTTTATT
Unaligned ( gi|13 ): TGGATGAGCCAAACATTTTGGGGGCTTTTGTAAATACAATTCTAGTGGCATATTTATACATTAGACATCAGCGA
Unaligned ( gi|18 ): TCAATTGATACATAACTGATGTTGTTTCTTTAAGAATTATGTTAATAGAATCAAAA
Alignments
lowQualScore : 1 2222 111111111 111 11 1 22 111 11 111 1111 111 1111111 4444444
lowQualScore : 0 0 7777 22 1 22 44 3 444444444 0 999 111 6 77 5 55 0 777 777 99 4 4 000 4 4 11 55 88 999999 44 44 888 3 111 33 6666 2 0 2 2 33 666 1111111 4 7 2222222 7
lowQualScore : . . .... .. . .. .. . ......... . ... ... . .. . .. . ... ... .. . . ... . . .. .. .. ...... .. .. ... . ... .. .... . . . . .. ... ....... . . ....... .
lowQualScore : 8 0 5555 55 0 00 66 8 000000000 8 888 777 7 99 7 99 8 999 888 66 4 4 777 4 4 00 00 66 666666 66 66 999 1 555 99 0000 9 4 9 9 99 777 8888888 4 3 0000000 3
consensus : NTTTTGTGATAT-TTCAAAA---AGCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C--GG-TAATAAATG
Reference ( family-3174 ) : NTTTTGTGATAT-TTCAAAA---TGTATTCANCNNAATTTNAAAA--AA--ATTATATTTCTTT---T-ACCA--CT-AAAAA-NACNGTTCGGCTGAT---ACAC-TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTTAC--GG-TAATAAATG
gi|1 : TTTTGTGATAT-CTAAAAAAACGGCGTTCATCTGAATTTTAAAA--AA--ATTA-------TT---T-ACCA--CC-AAAAATGAC--TTCAGCTGAT---ACA--TG-ATT-GATGA-T-TGTCC--TCT--AA--AAATT------GTGTT--TAC--AGAA---TTCA-A---A--ATA---CCATTGGCTGTAAAAAAAC-----------AACAA-------C-A
gi|10 : tggggcaaatatttcagccaaaggtctttttgcttttttaaagtaatgtcggtggcatatttataaataagaaattgggagattaatcatttttaatcgttaattaaaatggtttacttttgaaaattggtaaagtaaaaaaaaaatatggccaaaaaaaaagttaaatggggaagatgaatgcaaattcagtgtctaaaaaatggccaatatttcgatattttgcaataacttctgattggtgtaaagtattgtgctaaaccgtacactatttctttgtataagcatttgacataaacttaatttctgcagaaaaaaatattgcaagaatttcatccatccacattttgcattgaatcaaattctTTTAGCTAAATT--AGAA--AA--ATGATGTTTTTTTATTT-ACCA--CTGAGAAA-GAC--TTCATCTGAT---AC-T-TAGATTGTAGT--T-T-TCC--TCC--AA--AAA---------TGTT--CA---AAAA---Tgtg
gi|11 : ---ACA--TA-ATT-CATG--T-T-TTTGTTTC--ATCAAAATTTTTGATGTGTT--CAC--AATA---TCAA-A---A--ACA----CTTTGGCTG-AAACAGGCT-C-A--C-AGGACAA-------T-Atcacaa
gi|12 : ---TAAA-AGCCA--AAAGA-CCTTTGGCTC-AAACATGCA-C-C--CTG-AACAA-------TGGTTCTGGTTCCAAGGTTAATAAAact
gi|14 : AAA---CAAA-A---GCCAAAACACCTTTGGCTA-AAACAAGAG-C-C--T-ACAACAA-------T-Actttatt
gi|15 : ttaaatacatgcaattgaactgaacT------GTGTT--CGC--AAAA---TATA-A---A--AAAAT-CTTTGGGCTG-AAACGTGGGCC-C--C-A-AACAA-------T-A
gi|16 : C--TTC--AT--CAATT------GTTTA--CAC--AAAA---TAAA-AT--A--AAAAT---TTT-GCTG-AAACAAACA-T-C--C-atatataatatg
gi|17 : gtttaaa--AT--CAGTT------GTGTT--CCC--AAAA---TCCC-A---A--AA--T-CCTTTGGTTG-AAACAAGTG-C-A--C-A-tga
gi|19 : aacata--AAAAT-C-TTTGGCTG-AAACACGCG-C-C--TAA-AACAA-------T-caa
gi|3 : TTCCGTGTTGTATTCAAAG---AGAAATCATCTGAATTTGAAGA--AACAATTATATTTCAAT---T-ACCATCCC-AAAAA-TACAACTCAGCTGAT---ATACCTG-ACT-TATG--T-T-TCC--TTC--AT--AACTT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-TCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAG-------T-AT--TGGTT-------T-ATAAATG
gi|4 : aTTTTGTGATAT-TTCAAAA---TGTATTCAACACAATTTGAA-----------ATATTTCTTT---TAACCA--CT-AAAAA-CACTGTT---TTAAC---ACA---A-A-T-TATGTTT-T-TTC--TTCAAATA-AAATT------GTGTA--CAC--AGAA---TCCA-A---A--AA----TCTTTGGCTG-AAACAAGCG-C-C--C-ATAACAA-------
gi|5 : tTTTTGTGATCA-TTCAATA---AATTTTCAACTTAATTTGAAAAATAA--ACAATATT--TTT---T-GCAA--TT-AAAAATAACAGTTCAACTGAT---ACA--TG-TTT-TATG--G-T-T
gi|6 : ttacattgcaactaaatcatctA--CT-AAAAA-GACAGTTAGACTAATTCTATAC-TA-ATA-TAAT--T-T-TCA--TTC--AA--AATTT------GTGTT--CAT--AAAA---TAAA-T---A--AAACT-TCTTTGGCTG-AGACAAGAG-CAC--C-A-AACAA-------g
gi|7 : attgtca--TTC--AT--CAATT------GTCTT--CAC--AGAAGC-TAAA-A---A--AACAA-CCTTTGGCTG-AAACAGACT-C-C--CTG-AACAAAATCTAGT-ATTCTGGTTAC--GG-TAATAAATGa
gi|8 : aacatggttatatT---T-ACCA--CT-AAAAA---CAGTTCAACTGAT---ATA--TA-CTT-TATT--T-T-TCCCTTCC--AT--AAGTT------GTGCCAGCACCTAAAAATCTAAATA---A--AAAA----TTTGGCTT-AAACGTGCG-C-T--C-A-AGCttt
gi|9 : AAAA-GACCGTTAGGCTGAT---ACG--TA-ACA-CATA--TAT-TAA--TAT--AT--AAATT------GTGAT--CAC--AAAA---TAAA-AT--A--AAAACACCTTTGGCTG-AAACAAGCG-T-CTTC---AACAA-------T-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCACATGATTAAGCTAAACGTTTTTCGGCTTTTATAAATACAATGTTAGTGGTATTTTGAAAATTAGATATAGCGAGGTCATTCAATTTAGTGGCAAATAACATGTTTTACTTTTGAAATAATGTTTGGTAAAATAGATTTTACAGTAAAAATTGATTTTACATTGGAAAGTTCAACTAAACTTTCATGTCTTCAAAAGTGAAATCATTTAAATAAATGCAATAACTTTCGAATAGCGTGGTATGTTGTAATAAAACGTTCAGAATTCTTAATATCGGCATTTGACACATATCAAATCAAGTACTTTGCATAAATTTTGAGAG
Unaligned ( gi|13 ): TGGATGAGCCAAACATTTTGGGGGCTTTTGTAAATACAATTCTAGTGGCATATTTATACATTAGACATCAGCGA
Unaligned ( gi|18 ): TCAATTGATACATAACTGATGTTGTTTCTTTAAGAATTATGTTAATAGAATCAAAA
Alignments
lowQualScore : 1 222222 111111 111 11 11 111 11 111 1111 111 1111111 55555555
lowQualScore : 0 0 000000 1 1 0 3 333333 3 0 999 111 6 77 5 44 9 777 777 00 4 4 000 4 4 11 55 88 999999 44 44 888 3 111 33 6666 2 0 2 2 33 666 1111111 4 7 00000000
lowQualScore : . . ...... . . . . ...... . . ... ... . .. . .. . ... ... .. . . ... . . .. .. .. ...... .. .. ... . ... .. .... . . . . .. ... ....... . . ........
lowQualScore : 8 0 000000 0 0 8 8 666666 8 8 888 777 7 99 7 55 5 999 888 66 4 4 777 4 4 00 00 66 666666 66 66 999 1 555 99 0000 9 4 9 9 99 777 8888888 4 3 33333333
consensus : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
Reference ( family-3174 ) : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
gi|1 : TTTTGTGATAT-CTAAAAAAACGGCGTTCATCTGAATTTTAAAA--AA--ATTA-------TT---T-ACCA--CC-AAAAATGAC--TTCAGCTGAT---ACA--TG-ATT-GATGA-T-TGTCC--TCT--AA--AAATT------GTGTT--TAC--AGAA---TTCA-A---A--ATA---CCATTGGCTGTAAAAAAAC-----------AACAA-------C-A
gi|10 : tggggcaaatatttcagccaaaggtctttttgcttttttaaagtaatgtcggtggcatatttataaataagaaattgggagattaatcatttttaatcgttaattaaaatggtttacttttgaaaattggtaaagtaaaaaaaaaatatggccaaaaaaaaagttaaatggggaagatgaatgcaaattcagtgtctaaaaaatggccaatatttcgatattttgcaataacttctgattggtgtaaagtattgtgctaaaccgtacactatttctttgtataagcatttgacataaacttaatttctgcagaaaaaaatattgcaagaatttcatccatccacattttgcattgaatcaaattctTTTAGCTAAATT--AGAA--AA--ATGATGTTTTTTTATTT-ACCA--CTGAGAAA-GAC--TTCATCTGAT---ACT--TAGATTGTAGT--T-T-TCC--TCC--AA--AAA---------TGTT--CA---AAAA---Tgtg
gi|11 : ---ACA--TA-ATT-CATG--T-T-TTTGTTTC--ATCAAAATTTTTGATGTGTT--CAC--AATA---TCAA-A---A--ACA----CTTTGGCTG-AAACAGGCT-C-A--C-AGGACAA-------T-Atcacaa
gi|12 : ---TAAA-AGCCA--AAAGA-CCTTTGGCTC-AAACATGCA-C-C--CTG-AACAA-------TGGTTCTGGTT-CCAAGGTTAATAAAact
gi|14 : AAA---CAAA-A---GCCAAAACACCTTTGGCTA-AAACAAGAG-C-C--T-ACAACAA-------T-Actttatt
gi|15 : ttaaatacatgcaattgaactgaacT------GTGTT--CGC--AAAA---TATA-A---A--AAAAT-CTTTGGGCTG-AAACGTGGGCC-C--C-A-AACAA-------T-A
gi|16 : C--TTC--AT--CAATT------GTTTA--CAC--AAAA---TAAA-AT--A--AAAAT---TTT-GCTG-AAACAAACA-T-C--C-atatataatatg
gi|17 : gtttaaa--AT--CAGTT------GTGTT--CCC--AAAA---TCCC-A---A--AA--T-CCTTTGGTTG-AAACAAGTG-C-A--C-A-tga
gi|19 : aacata--AAAAT-C-TTTGGCTG-AAACACGCG-C-C--TAA-AACAA-------T-caa
gi|3 : TTCCGTGTTGTATTCAAAGA---GAAATCATCTGAATTTGAAGA--AACAATTATATTTCAAT---T-ACCATCCC-AAAAA-TACAACTCAGCTGAT---ATACCTG-ACT-TATG--T-T-TCC--TTC--AT--AACTT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-TCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAG-------T-AT--TGGTT-T--------ATAAATG
gi|4 : aTTTTGTGATAT-TTCAAAAT---GTATTCAACACAATTTGAA-----------ATATTTCTTT---TAACCA--CT-AAAAA-CACTGTT----TTA----ACA--CA-AAT-TATGTTT-T-TTC--TTCAAATA-AAATT------GTGTA--CAC--AGAA---TCCA-A---A--AA----TCTTTGGCTG-AAACAAGCG-C-C--C-ATAACAA-------
gi|5 : tTTTTGTGATCA-TTCAATAA---ATTTTCAACTTAATTTGAAAAATAA--ACAATATT--TTT---T-GCAA--TT-AAAAATAACAGTTCAACTGAT---ACA--TG-TTT-TATG--G-T-T
gi|6 : ttacattgcaactaaatcatctA--CT-AAAAA-GACAGTTAGACTAATTCTATAC-TA-ATA-TAAT--T-T-TCA--TTC--AA--AATTT------GTGTT--CAT--AAAA---TAAA-T---A--AAACT-TCTTTGGCTG-AGACAAGAG-CAC--C-A-AACAA-------g
gi|7 : attgtca--TTC--AT--CAATT------GTCTT--CAC--AGAAGC-TAAA-A---A--AACAA-CCTTTGGCTG-AAACAGACT-C-C--CTG-AACAAAATCTAGT-ATTCTGGTTAC---GG-TAATAAATGa
gi|8 : aacatggttatatT---T-ACCA--CT-AAAAA---CAGTTCAACTGAT---ATA--TA-CTT-TATT--T-T-TCCCTTCC--AT--AAGTT------GTGCCAGCACCTAAAAATCTAAATA---A--AAAA----TTTGGCTT-AAACGTGCG-C-T--C-A-AGCttt
gi|9 : AAAA-GACCGTTAGGCTGAT---ACG--TA-ACA-CATA--TAT-TAA--TAT--AT--AAATT------GTGAT--CAC--AAAA---TAAA-AT--A--AAAACACCTTTGGCTG-AAACAAGCG-T-CTTC---AACAA-------T-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCACATGATTAAGCTAAACGTTTTTCGGCTTTTATAAATACAATGTTAGTGGTATTTTGAAAATTAGATATAGCGAGGTCATTCAATTTAGTGGCAAATAACATGTTTTACTTTTGAAATAATGTTTGGTAAAATAGATTTTACAGTAAAAATTGATTTTACATTGGAAAGTTCAACTAAACTTTCATGTCTTCAAAAGTGAAATCATTTAAATAAATGCAATAACTTTCGAATAGCGTGGTATGTTGTAATAAAACGTTCAGAATTCTTAATATCGGCATTTGACACATATCAAATCAAGTACTTTGCATAAATTTTGAGAG
Unaligned ( gi|13 ): TGGATGAGCCAAACATTTTGGGGGCTTTTGTAAATACAATTCTAGTGGCATATTTATACATTAGACATCAGCGA
Unaligned ( gi|18 ): TCAATTGATACATAACTGATGTTGTTTCTTTAAGAATTATGTTAATAGAATCAAAA
Alignments
lowQualScore : 1 222222 111111 111 11 11 111 11 111 1111 111 1111111 55555555
lowQualScore : 0 0 000000 1 1 0 3 333333 3 0 999 111 6 77 5 44 9 777 777 00 4 4 000 4 4 11 55 88 999999 44 44 888 3 111 33 6666 2 0 2 2 33 666 1111111 4 7 00000000
lowQualScore : . . ...... . . . . ...... . . ... ... . .. . .. . ... ... .. . . ... . . .. .. .. ...... .. .. ... . ... .. .... . . . . .. ... ....... . . ........
lowQualScore : 8 0 000000 0 0 8 8 666666 8 8 888 777 7 99 7 55 5 999 888 66 4 4 777 4 4 00 00 66 666666 66 66 999 1 555 99 0000 9 4 9 9 99 777 8888888 4 3 33333333
consensus : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
Reference ( family-3174 ) : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
gi|1 : TTTTGTGATAT-CTAAAAAAACGGCGTTCATCTGAATTTTAAAA--AA--ATTA-------TT---T-ACCA--CC-AAAAATGAC--TTCAGCTGAT---ACA--TG-ATT-GATGA-T-TGTCC--TCT--AA--AAATT------GTGTT--TAC--AGAA---TTCA-A---A--ATA---CCATTGGCTGTAAAAAAAC-----------AACAA-------C-A
gi|10 : tggggcaaatatttcagccaaaggtctttttgcttttttaaagtaatgtcggtggcatatttataaataagaaattgggagattaatcatttttaatcgttaattaaaatggtttacttttgaaaattggtaaagtaaaaaaaaaatatggccaaaaaaaaagttaaatggggaagatgaatgcaaattcagtgtctaaaaaatggccaatatttcgatattttgcaataacttctgattggtgtaaagtattgtgctaaaccgtacactatttctttgtataagcatttgacataaacttaatttctgcagaaaaaaatattgcaagaatttcatccatccacattttgcattgaatcaaattctTTTAGCTAAATT--AGAA--AA--ATGATGTTTTTTTATTT-ACCA--CTGAGAAA-GAC--TTCATCTGAT---ACT--TAGATTGTAGT--T-T-TCC--TCC--AA--AAA---------TGTT--CA---AAAA---Tgtg
gi|11 : ---ACA--TA-ATT-CATG--T-T-TTTGTTTC--ATCAAAATTTTTGATGTGTT--CAC--AATA---TCAA-A---A--ACA----CTTTGGCTG-AAACAGGCT-C-A--C-AGGACAA-------T-Atcacaa
gi|12 : ---TAAA-AGCCA--AAAGA-CCTTTGGCTC-AAACATGCA-C-C--CTG-AACAA-------TGGTTCTGGTT-CCAAGGTTAATAAAact
gi|14 : AAA---CAAA-A---GCCAAAACACCTTTGGCTA-AAACAAGAG-C-C--T-ACAACAA-------T-Actttatt
gi|15 : ttaaatacatgcaattgaactgaacT------GTGTT--CGC--AAAA---TATA-A---A--AAAAT-CTTTGGGCTG-AAACGTGGGCC-C--C-A-AACAA-------T-A
gi|16 : C--TTC--AT--CAATT------GTTTA--CAC--AAAA---TAAA-AT--A--AAAAT---TTT-GCTG-AAACAAACA-T-C--C-atatataatatg
gi|17 : gtttaaa--AT--CAGTT------GTGTT--CCC--AAAA---TCCC-A---A--AA--T-CCTTTGGTTG-AAACAAGTG-C-A--C-A-tga
gi|19 : aacata--AAAAT-C-TTTGGCTG-AAACACGCG-C-C--TAA-AACAA-------T-caa
gi|3 : TTCCGTGTTGTATTCAAAGA---GAAATCATCTGAATTTGAAGA--AACAATTATATTTCAAT---T-ACCATCCC-AAAAA-TACAACTCAGCTGAT---ATACCTG-ACT-TATG--T-T-TCC--TTC--AT--AACTT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-TCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAG-------T-AT--TGGTT-T--------ATAAATG
gi|4 : aTTTTGTGATAT-TTCAAAAT---GTATTCAACACAATTTGAA-----------ATATTTCTTT---TAACCA--CT-AAAAA-CACTGTT----TTA----ACA--CA-AAT-TATGTTT-T-TTC--TTCAAATA-AAATT------GTGTA--CAC--AGAA---TCCA-A---A--AA----TCTTTGGCTG-AAACAAGCG-C-C--C-ATAACAA-------
gi|5 : tTTTTGTGATCA-TTCAATAA---ATTTTCAACTTAATTTGAAAAATAA--ACAATATT--TTT---T-GCAA--TT-AAAAATAACAGTTCAACTGAT---ACA--TG-TTT-TATG--G-T-T
gi|6 : ttacattgcaactaaatcatctA--CT-AAAAA-GACAGTTAGACTAATTCTATAC-TA-ATA-TAAT--T-T-TCA--TTC--AA--AATTT------GTGTT--CAT--AAAA---TAAA-T---A--AAACT-TCTTTGGCTG-AGACAAGAG-CAC--C-A-AACAA-------g
gi|7 : attgtca--TTC--AT--CAATT------GTCTT--CAC--AGAAGC-TAAA-A---A--AACAA-CCTTTGGCTG-AAACAGACT-C-C--CTG-AACAAAATCTAGT-ATTCTGGTTAC---GG-TAATAAATGa
gi|8 : aacatggttatatT---T-ACCA--CT-AAAAA---CAGTTCAACTGAT---ATA--TA-CTT-TATT--T-T-TCCCTTCC--AT--AAGTT------GTGCCAGCACCTAAAAATCTAAATA---A--AAAA----TTTGGCTT-AAACGTGCG-C-T--C-A-AGCttt
gi|9 : AAAA-GACCGTTAGGCTGAT---ACG--TA-ACA-CATA--TAT-TAA--TAT--AT--AAATT------GTGAT--CAC--AAAA---TAAA-AT--A--AAAACACCTTTGGCTG-AAACAAGCG-T-CTTC---AACAA-------T-A
blockSeqs : A GAA G A A AACA G TTT ATT A TC G TA A CAT TCT CC G G GTT A . GT AA CA TTTGAT AG CT ATC T GCC CC ACAC . C A TT AG AATCTAG G T ACGG
blockSeqs : . GTA T G G ATAA T TCA . . . . G T CAG . C . . T . . CT . A . . . GC . T . ACAC . . . . TG . . . T
blockSeqs : . ATT A C A AA A TCT . . . . T A CAA . . . . G . . . . . . . . . . T . GAC . . . . AC . .
blockSeqs : A T . . . T . . . . C A AGA . . . . G . . . . . . . . . . . . ATC . . . . AA . .
blockSeqs : . . . . G A CAA . . . . G . . . . . . . . . . . . ATC . . . . AT . .
blockSeqs : . . G C AGG . . . . T . . . . . . . . . . . . ATT . . . . TG . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . CTT . . . . A . .
blockSeqs : . . . . A . . . . . . . . . . . . AAC . . . . A . .
blockSeqs : . . . . . . . . . . AT . . . . A .
blockSeqs : . . . . . . . . . TC . . . . A .
blockSeqs : . . . . . . . T . . . . A
blockSeqs : . . . . A . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AA**** TCT G* N** ATC* A**
originalCons : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TATG--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
finalCons : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAAAA----ATNATATTTCTTT---T-ACCA--CT-AAAAAG-ACAGTTCGGCTGAT---ACA--TA-ATT-TATN--T-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAATC-CTTTGGCTG-AAACAAGCG-C-C--CA--AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCACATGATTAAGCTAAACGTTTTTCGGCTTTTATAAATACAATGTTAGTGGTATTTTGAAAATTAGATATAGCGAGGTCATTCAATTTAGTGGCAAATAACATGTTTTACTTTTGAAATAATGTTTGGTAAAATAGATTTTACAGTAAAAATTGATTTTACATTGGAAAGTTCAACTAAACTTTCATGTCTTCAAAAGTGAAATCATTTAAATAAATGCAATAACTTTCGAATAGCGTGGTATGTTGTAATAAAACGTTCAGAATTCTTAATATCGGCATTTGACACATATCAAATCAAGTACTTTGCATAAATTTTGAGAG
Unaligned ( gi|13 ): TGGATGAGCCAAACATTTTGGGGGCTTTTGTAAATACAATTCTAGTGGCATATTTATACATTAGACATCAGCGA
Unaligned ( gi|18 ): TCAATTGATACATAACTGATGTTGTTTCTTTAAGAATTATGTTAATAGAATCAAAA
Alignments
lowQualScore : 1 222222 111111 111 11 11 111 111 1111 111 1111111 55555555
lowQualScore : 0 0 000000 1 1 0 3 333333 3 0 999 111 6 77 5 44 9 777 777 00 4 8 55 4 4 222 0 55 88 999999 44 44 888 3 111 33 6666 2 0 2 2 33 666 1111111 4 7 00000000
lowQualScore : . . ...... . . . . ...... . . ... ... . .. . .. . ... ... .. . . .. . . ... . .. .. ...... .. .. ... . ... .. .... . . . . .. ... ....... . . ........
lowQualScore : 8 0 000000 0 0 8 8 666666 8 8 888 777 7 99 7 55 5 999 888 66 4 0 00 0 0 666 5 00 66 666666 66 66 999 1 555 99 0000 9 4 9 9 99 777 8888888 4 3 33333333
consensus : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TAT-NT-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
Reference ( family-3174 ) : NTTTTGTGATAT-TTCAAAAA---GCGTTCANCTNAATTTGAAAA--AA--ATNATATTTCTTT---T-ACCA--CT-AAAAA-GACAGTTCGGCTGAT---ACA--TA-ATT-TAT-NT-T-TCC--TTC--AT--AAATT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-CCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAA-------T-ATTCTGGTT-C---GG-TAATAAATG
gi|1 : TTTTGTGATAT-CTAAAAAAACGGCGTTCATCTGAATTTTAAAA--AA--ATTA-------TT---T-ACCA--CC-AAAAATGAC--TTCAGCTGAT---ACA--TG-ATT-GATGAT-TGTCC--TCT--AA--AAATT------GTGTT--TAC--AGAA---TTCA-A---A--ATA---CCATTGGCTGTAAAAAAAC-----------AACAA-------C-A
gi|10 : tggggcaaatatttcagccaaaggtctttttgcttttttaaagtaatgtcggtggcatatttataaataagaaattgggagattaatcatttttaatcgttaattaaaatggtttacttttgaaaattggtaaagtaaaaaaaaaatatggccaaaaaaaaagttaaatggggaagatgaatgcaaattcagtgtctaaaaaatggccaatatttcgatattttgcaataacttctgattggtgtaaagtattgtgctaaaccgtacactatttctttgtataagcatttgacataaacttaatttctgcagaaaaaaatattgcaagaatttcatccatccacattttgcattgaatcaaattctTTTAGCTAAATT--AGAA--AA--ATGATGTTTTTTTATTT-ACCA--CTGAGAAA-GAC--TTCATCTGAT---ACT--TAGATTGTAG-TT-T-TCC--TCC--AA--AAA---------TGTT--CA---AAAA---Tgtg
gi|11 : ---ACA--TA-ATT-CAT-GT-T-TTTGTTTC--ATCAAAATTTTTGATGTGTT--CAC--AATA---TCAA-A---A--ACA----CTTTGGCTG-AAACAGGCT-C-A--C-AGGACAA-------T-Atcacaa
gi|12 : ---TAAA-AGCCA--AAAGA-CCTTTGGCTC-AAACATGCA-C-C--CTG-AACAA-------TGGTTCTGGTT-CCAAGGTTAATAAAact
gi|14 : AAA---CAAA-A---GCCAAAACACCTTTGGCTA-AAACAAGAG-C-C--T-ACAACAA-------T-Actttatt
gi|15 : ttaaatacatgcaattgaactgaacT------GTGTT--CGC--AAAA---TATA-A---A--AAAAT-CTTTGGGCTG-AAACGTGGGCC-C--C-A-AACAA-------T-A
gi|16 : C--TTC--AT--CAATT------GTTTA--CAC--AAAA---TAAA-AT--A--AAAAT---TTT-GCTG-AAACAAACA-T-C--C-atatataatatg
gi|17 : gtttaaa--AT--CAGTT------GTGTT--CCC--AAAA---TCCC-A---A--AA--T-CCTTTGGTTG-AAACAAGTG-C-A--C-A-tga
gi|19 : aacata--AAAAT-C-TTTGGCTG-AAACACGCG-C-C--TAA-AACAA-------T-caa
gi|3 : TTCCGTGTTGTATTCAAAGA---GAAATCATCTGAATTTGAAGA--AACAATTATATTTCAAT---T-ACCATCCC-AAAAA-TACAACTCAGCTGAT---ATACCTG-ACT-TAT-GT-T-TCC--TTC--AT--AACTT------GTGTT--CAC--AAAA---TAAA-A---A--AAAAT-TCTTTGGCTG-AAACAAGCG-C-C--C-A-AACAG-------T-AT--TGGTT-T--------ATAAATG
gi|4 : aTTTTGTGATAT-TTCAAAAT---GTATTCAACACAATTTGAA-----------ATATTTCTTT---TAACCA--CT-AAAAA-CACTGTT---TTAAC---ACA---A-ATTATGT-TT-T-TTC--TTCAAATA-AAATT------GTGTA--CAC--AGAA---TCCA-A---A--AA----TCTTTGGCTG-AAACAAGCG-C-C--C-ATAACAA-------
gi|5 : tTTTTGTGATCA-TTCAATAA---ATTTTCAACTTAATTTGAAAAATAA--ACAATATT--TTT---T-GCAA--TT-AAAAATAACAGTTCAACTGAT---ACA--TG-TTT-TAT-GG-T-T
gi|6 : ttacattgcaactaaatcatctA--CT-AAAAA-GACAGTTAGACTAATTCTATAC-TA-ATA-TAA-TT-T-TCA--TTC--AA--AATTT------GTGTT--CAT--AAAA---TAAA-T---A--AAACT-TCTTTGGCTG-AGACAAGAG-CAC--C-A-AACAA-------g
gi|7 : attgtcaT-TAT-AT-T-TC--------AT--CAATT------GTCTT--CAC--AGAAGC-TAAA-A---A--AACAA-CCTTTGGCTG-AAACAGACT-C-C--CTG-AACAAAATCTAGT-ATTCTGGTTAC---GG-TAATAAATGa
gi|8 : aacatggT---T-ACCA--CT-AAAAA---CAGTTCAACTGAT---ATA--TA-CTT-TAT-TT-T-TCCCTTCC--AT--AAGTT------GTGCCAGCACCTAAAAATCTAAATA---A--AAAA----TTTGGCTT-AAACGTGCG-C-T--C-A-AGCttt
gi|9 : AAAA-GACCGTTAGGCTGAT---ACG--TA-ACA-CAT-ATAT-TAA--TAT--AT--AAATT------GTGAT--CAC--AAAA---TAAA-AT--A--AAAACACCTTTGGCTG-AAACAAGCG-T-CTTC---AACAA-------T-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCACATGATTAAGCTAAACGTTTTTCGGCTTTTATAAATACAATGTTAGTGGTATTTTGAAAATTAGATATAGCGAGGTCATTCAATTTAGTGGCAAATAACATGTTTTACTTTTGAAATAATGTTTGGTAAAATAGATTTTACAGTAAAAATTGATTTTACATTGGAAAGTTCAACTAAACTTTCATGTCTTCAAAAGTGAAATCATTTAAATAAATGCAATAACTTTCGAATAGCGTGGTATGTTGTAATAAAACGTTCAGAATTCTTAATATCGGCATTTGACACATATCAAATCAAGTACTTTGCATAAATTTTGAGAG
Unaligned ( gi|13 ): TGGATGAGCCAAACATTTTGGGGGCTTTTGTAAATACAATTCTAGTGGCATATTTATACATTAGACATCAGCGA
Unaligned ( gi|18 ): TCAATTGATACATAACTGATGTTGTTTCTTTAAGAATTATGTTAATAGAATCAAAA