lowQualScore : 1 1 1111 1 777777777777777777777777777777 22222222222 11111111 222222222 1 111 111 1 11 22222 11 1 999999999999999999999999999999999999999999999 22222222222222222222222222222 1111 111111 3333333333333333333 3333333333333333333333333 1 11111 11111 3333 11 22222 66666666666666666 1 111 1 11 1 11111 111 11111 2222222 3333333333333333333333333333 1111 1 1 1 8888888888888888888888888888888 111111111 33333333333333333 1111 1 1 111111111 222222 3333333333333333 2222222222222 2 33333333333333333333 66666666666666666666666666 33333333333333333333333333333333 111 2222 111 111 11 111 1111 111 1 1 4444444444444 999999999999999999 4444444444 2222 1 444 1 1 55 4 1 1
lowQualScore : 8 5 3 2 1 0 1 2222 8 777777777777777777777777777777 3 77777777777 999999 44 88888888 88 5 3 222222222 8 000 9 4 0 5 000 77 6 5 1 22 4 2 9999 11111 0 2 66 55 88 3 22 1 4 4 4 8 9 999999999999999999999999999999999999999999999 55 3 6 55555555555555555555555555555 99 5 1 2 3 33 0000 888888 55 333333 44 2222222222222222222 4 2 3 0 4444444444444444444444444 0 3 0 0 99999 2 11111 66 1 9999 6 5 4444 77 11111 55555555555555555 9999 4 0 666 6 2 555 5 5 6 3 666 3 7 88 5 0 44 777 7 5 666 22222 66 11 000 5 44444 3333333 3 444 6666 0 4 1111111111111111111111111111 5555 44 7 5 0 1 66 9 5 0000000000000000000000000000000 4 0 555 888888888 22222222222222222 3333 0 2 2 3 33 888888 555555555 5 888 0 777777 5 3333333333333333 3 1 8888888888888 0 2 1 4 4 66 55 2 3 4 2 4 4 8 9 77 44444444444444444444 44444444444444444444444444 3 8 3 22222222222222222222222222222222 444 5 2 0 2 4444 2 000 1 1 000 3 55 5 77 1 555 1 1 0000 333 4 4 1 0 333 2 1 4 3 4 5 7 5 3 5555555555555 555555555555555555 777 6 7 77 5 9999999999 0 3 7777 2 4 5 000 6 6 5 7 55 0 7 5
lowQualScore : . . . . . . . .... . .............................. . ........... ...... .. ........ .. . . ......... . ... . . . . ... .. . . . .. . . .... ..... . . .. .. .. . .. . . . . . . ............................................. .. . . ............................. .. . . . . .. .... ...... .. ...... .. ................... . . . . ......................... . . . . ..... . ..... .. . .... . . .... .. ..... ................. .... . . ... . . ... . . . . ... . . .. . . .. ... . . ... ..... .. .. ... . ..... ....... . ... .... . . ............................ .... .. . . . . .. . . ............................... . . ... ......... ................. .... . . . . .. ...... ......... . ... . ...... . ................ . . ............. . . . . . .. .. . . . . . . . . .. .................... .......................... . . . ................................ ... . . . . .... . ... . . ... . .. . .. . ... . . .... ... . . . . ... . . . . . . . . . ............. .................. ... . . .. . .......... . . .... . . . ... . . . . .. . . .
lowQualScore : 8 0 1 0 1 5 9 9999 1 333333333333333333333333333333 3 55555555555 666666 66 77777777 11 4 6 888888888 7 777 4 3 4 7 000 99 7 0 0 77 9 5 8888 22222 5 5 11 55 55 9 33 2 4 3 4 3 4 999999999999999999999999999999999999999999999 00 5 0 00000000000000000000000000000 99 5 2 7 8 44 0000 222222 00 888888 88 9999999999999999999 0 6 6 5 1111111111111111111111111 5 6 5 7 33333 7 11111 11 9 4444 0 0 2222 44 66666 99999999999999999 4444 0 2 444 2 8 888 4 2 8 3 888 0 0 22 0 8 33 888 0 0 222 44444 11 99 000 7 33333 2222222 4 777 2222 9 4 0000000000000000000000000000 5555 88 0 4 5 9 99 0 0 1111111111111111111111111111111 0 2 888 888888888 22222222222222222 6666 1 6 7 8 77 888888 999999999 0 888 4 999999 0 6666666666666666 6 1 3333333333333 5 7 6 0 0 11 55 8 1 0 5 3 4 3 4 22 22222222222222222222 55555555555555555555555555 5 2 7 77777777777777777777777777777777 888 5 4 1 9 8888 5 444 1 7 000 9 33 7 99 9 777 1 9 8888 333 1 0 5 7 999 4 8 4 9 1 0 2 0 9 0000000000000 000000000000000000 888 0 5 22 3 8888888888 1 5 3333 5 0 0 000 0 0 0 0 00 0 0 0
consensus : CTTCTCTTCCCGGCC-CGAATGTCACCCCTTGGCAAATACTTGGGTTTCAATGGACAACTCAG---GTATCTT--CT--ACAGACCGT--CT---C-TG----CCCAGAGACACCAAGT----------TTTTA------ACTC--TGG------CTCANCTAGAAGGCC-GT-CAAC--GAGTCTTGTGAA--CATGTGCACACGT-TCA---G--TGCAT-TGGCTGGGCAGCGATTTNGACGAAATGTA-GCGAAAAG-NTGGCTTCTCTTCCCGGCCCG-A--ATG-CCACCCCTTGGNAAATACT-TGGGTTTC-AATGGACAACTCAGGT--ATCTT--CT---ACACAC---C--C--TGCT---C--G----CTC--AGAGACACCAAGTTTTTAAC----------------TC--TGG------CTCANCTAGAAGGCCGTC-AACGAGTNTCGTGAA--CATGTG----CACAC---GT-TC--A---G--TGCAT-TGGCTG---G-----GCA-------GCGAT-TTNGA-CGAAAT-----GT------A-GCGAAA-G-TGGCTTCTC-TTCCCGGCCCAAATGC-CACCCC-----TTG--GAA----AATACTTGGGTTT-CAATGGACANCTCAGGT---ATCTTCTACACAC-CG-TGNT---C-TG----C-TCAGAGA---CACCAAGTTTTTAACTCTGGCTCANCTAGAAGGCCGTCAACGAGTCTCGTGAACA-TG--TGCACACGTTCAGTGCATTGGCTGGGCAGCGATTTCGACGAAATGTAGTNAA---AGAAGGCCGTCAACGAGTCTCGTGAA--CATGTG----CAC--ACGTTCA---GT-GCA-----TTGGCTGGGCAGCGATTTNGACGAAATGTA-GCGA-AAAGNTGGC-TTCCCT---T-CCNGCC-CGAATGT--CACCCCTTGGNAAATACTTGGGTTTCAATGGACAACTC--AGG-TATCTTC---T--ACA--GACCGTACT---C-TGC-TCAGAGA---CACCAAGTTTTTGAC--------TCT----------------GGCT-CATCTAGAAGGCCGTC-AACGAGTNTCGTGAA--CATGTG------CAC-------ACGTT-CA---GTGC----A-TT-GGCTG---GGCAGCG-----ATTTNGACGAAATGTA-GCGAAAAGNTGGCTTCTCTTCCCGGC-C-CG-A--ATGTCACCCCTTG-GNAAATACTTGGGTTTC-AATGGACAACTC-----A---------GGTATCTTCTACA-NAC-CNTG--NT---C-T--G----CTCAGAGACACCAAGTTTTTGA----GCTC---------TGG----------CTCANCTAGAAGGCCGTC-AACGAGTNTCGTGAACATGTG---CACACGTTCA---GTGC-ATTG-GCTG--GGCAGCGATTTCGA--CGAAATGNA-GCGAAAAGAT-GGCTTCTCTTCCCGGCCCGAATGTCACCCCTTG-GAAAATACTTGGGTTT-CAATGGACAACTCAG---------GTATCTTCTACAGAC-CA-T-CT---C-TGCT---CAGAGACACCAAGTTTTTGACTCTGGCTCATCTAGAAGGCCGTCAAC--GTCAG--TTGTGAAGAACATTTTTNTGTNCACGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
Reference ( gi|1 ) : CTTCTCTTGCCGGCC-CGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAG---ATAGCTT--GT--ACAGACCAT-ACT---C-AG----CTCAGAAACACCAAGT----------GTTTA------ACTC--TCA------CTCGTCTGGAAGGCC-GT-AATC--GTGTCTAGTGAA--TATGTGGATACGT-TCA---G--TGCAT-TGGGTGGGCATCGATTTTGACGAAATGTA-GCGAAAAG-TTGGCTTCTCTTCCCGGCCCG-A--ATG-CCACCCTTTGACAATTACT-TGGATTTC-ATTGCACAACTCAGGT--TACTT--TA---ACAGAC---C--C--TACT---C-AG----TTC--AGAAACACCAAATTTTTAAC----------------TC--TCA------CTCGTCTGGAAGGCCGTC-AACGAGTCTTGTGAA--CATGTG----CACAC---GT-TC--A---G--TGCAT-TGGCTG---G-----GCA-------GCGAT-TTTGA-CGAAAT-----GT------A-GCGAAAAGTTGGCTTCTC-TTCCTGGCCCAAAAGC-AACCTC-----TTG--GAA----AATATTTGGGTTT-CATTTTACAAATCAGGT---AGCTTCTACATAC-CA-TACT---C-AG----C-TCAGAAA---CACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACA-TA--TGCACACGTTCAGTACTTTGGCTGGGCAGCGATTTTTGCGAAATGTAGCGAA---AGAAAGCCGTCAACTAGTCTTGTGAA--CATGTG----TAC--ACGTTCA---GT-GCA-----TTGGCTCGGCAACGATTTTGACGAGATGTA-GCGA-AAAGTTCGC-TACTTT---T-CCTACCGCGAATAC--CACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTC--ATG-TAGATTC---T--ACA--GACCATACT---C-AGC-TCAGAAA---CACCAAGTTTTTAAT--------TCT----------------TGCT-TGTCTAGAAGTCCGGC-AACGAGTCTTGTGAA--CATGTG------CAC-------AGGTT-CA---GTGC----T-TT-GGCTG---GGCAGGG-----ATTTTGACGAAATGTA-ACGAAAAGTTGGCTTCTCTTCCAGGC-C-CG-A--ATGCCACCCCTTG-GCAAATACTTGGATTTC-ATTGCACAATTC-----A---------TATAGCTTCTACA-GAC-CATG--CT---C-A--G----CTCAGAAACACTAAATTTTTAA----ACTC---------TCG----------CTTGTCTGGAAGGCCGTC-AACGAGTTATATGAACATATG---CACACGTTCA---GTAC-TTTG-GCTG--GGCAGCGATTTTGG--CGAAATGTA-GCGAAAAGAT-GGCTTCTCTTCCCGGCACGAATGCCACCCCTTG-GCAAATACTTGGATTT-CATTGCACAAATCAG---------ACAGCTTCTACCGAC-CA-TACT---C-AGCT---CAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAAC--ATCAG--CTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAATTAAGATAATA
gi|2 : CTTTTCTTCCCGGTT-CAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCAT---GTATCAT--GT--A---A--ATGATT---T-GGAGGATGCAGAAACACCAGGT----------TTTTA------ACTC--CTG------CTCATTTAGAAGGCC-GT-CAAC--GTGTCTTGTGAA--GATGTGCTCACTT-TCA---G--TGTAT-TGGCGGGGC-TGG-----GATGCGATTTA-GATAAAAA-TAGGTTT-TCTTCCCTGCCAA-C--ATG-GCACCCCTTGAAAAATAAT-TGAGTTTC-ATAACACAACTCATGT--ATCAT--GT---ACATGG---G--T--TGG------AG----TTCTGAGAAATACCAAGTTGTTAAC----------------TC--TGG------CTCTATTAGAAGGCCACC-AAAGAGTCTTGTGAA--AATTTG----TTTAC---TT-TC--A---G--TGCAT-TGACTG---GACTGGGCT-------GCGAT-TTTAA-CGAAAG-----TT------A-GTAAAA---TGGCTTTTC-TTCCCGACCCAAACGT-CACCCC-----TTG--GAA----AATACTTGGGTTT-CATTACACATTTCATGT---ATCATGTACATG------GGT---T-GGAGGTC-TCATAAA---CATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGA-TG--TGCTCACTTTCAGTGCATTGGTTAGGCTGCGATTTCGACGAAA-GTA
gi|9 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTCCCTTCCCGGTC-CAAATGCCACCCCTTGACAAATagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|8 : atgaaatcttcacgattattagattgtcagagacaccaagtttttgactctcgctcatcttgaaggtcgtcaacgagtcttgtgaagatatgtgcacacggtcagtacattggctgggcagcgatttgtacgaaatgtagtgaaaagatggCTTTTCTT-CCGGCC-TAAATGTAACCCCTTGGAAAATACTT
gi|15 : tgaacatgctttacaacgctcagaaacaccaagtttttaactctggctcaattacaaggccatcgatgagtcttgtgaatatgtgcacatgttcagtgcattggctgggcagtgattttgacgaaatgaagtaaaatagCTTCTCTTGCCGGCC-CGAATGCCACCCCTTGGCAAATcaagagattatagaatccgccacttagata
gi|5 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggagcgtaacgttggTCGCTTCCCGGCC-TGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAG---GTA--TTAAGT--ACAG-C-----TT---C-AAGGGTTTCAAA------AAGT----------TTTTA------ACTC--TGG------CTCAATTAGAAGGCC-GC-CAAC--GAGTTGTGTGAA--CA
gi|3 : gaaccaccaagttttcaactctgactcaattagaacgccgccaacgagtcgtgtgaacatgtgcacacattcagtgcattggctggacagcgatttcgacaaatgtagtaatatggcTCCTGCCG----CAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAG---GTATCTT--CTTCACACACTGG-CCT---C-------CCCAGAGACTCCAGGTTTTGAATGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCG-GT-CAAC--GAGTGTCGGGAA--CATGTGCACACAC-ACAAACG--TGCATGTTGTTGA----CTATTTGGACCAAATCAG-GCGAAAAC-ACGGCTTCCCTTTCC--TCCGCA--AAG-TCCCCCCTTGCAAAATACT-TGGATTTCCATGGCA--ACTCAGGT--ATCTT--CT---ACACAC---A--CAGGACT------G----TTC--AGAGACACCAAGTTTT-AAA----------------TG--TGG------CTCATCTAGGAGACGGTC-AACGAGTGTCGTGAA--CATGTGAA--CATAC---AC-AC--AAAGG--TGCAT-cag
gi|10 : acacccagtttttgagtctgtcttatccaaatgtcggtcaacgagtgtcgggagcatttgcacccacataaagttgcaagttgttggctatttggacggaatcaggcgacacacggctttcatTCTTCCCGGCC-CAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTT--TT--GGAGATCAT--TT---CGAG----CTCAGAAACACCAAGT----------TTTTA------ACTC--TCG------CTCACCTAAAAGGCC-GT-CAAC--GAGTCTTGTGAA--GATGTGgt
gi|12 : gaacttgacgaaatgtgaaatgttggcctgTCTCGCCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAG---GTATCTT--CT--ACAca
gi|4 : tacaagctgtaggctgtttggagcgaatcaggcgaaaagatggcaGCTAATACTTGGGTTTCAATGGACACCTCAG---GTGTCTT--CT--AC--ACCCT--CTGGCC-TG----CCCAGTGACACCAAGT----------TTTTG------AGTG--TGG------TTCATCTAGAAGACG-TT-CATCAAGTGTCC--TGAA--CATGGGGACACATACCA---GGCTGCAccctctggcctgcccnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : cctagaagccggcgaacgggtgtcgtgaacaaggggacacacaccaggctccaagctgtaggctgtttggagcgaatcaggcgacacgatcggcctcgcatcccgccaacaatgtccgccgtatTGGGTTTCAATGGACAACTCAG---GTATCTT--CT--AC---TCAC-ACTGGCC-TG----CCCAGGTACACCAAGT----------TTTTG------AGTG--TGG------CTCATTTGGAAagctgtaggctgtttggagcgaatcaggc
gi|11 : aaaatacttaattgctaGGTTTCAATGGACACGTCAG---GTGTCTT--CT--ACACCCCCT-GGG---C-TG----CCCAGTGACACCCAGT----------TTTTG------AGCG--TGG------CTCATCGAGAAGTCG-GT-CAAC--GAGTGTCGTGAA--CATGGGGACACttcggtcaacgagtgtcgggaacattatgataaatgcaaatcaatagtatatat
gi|7 : tCTT--CT--ACAGACCGT-CTC---C-TG----CTCAGAAACAC-AAGT----------TTTCT------ACTC--TGT------CTCTTCTAGAAGGTC-GT-CAAC--GAGTCTTGAGAA--CATGTGTACACGT-TCA---G--TGCAT-TGGCTGGGAACCGATTTTGTCCTAAT-TAGGCGAAAAC-ATGGCTTCTCTTTCacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|8 : tG----CTCAGAAACACCAAGT----------TTTTA------ACTC--TGG------CTCAATTACAAGGCC-ATCGAT---GAGTCTTGTGAA--TATGTGCACATGT-TCA---G--TGCAT-TGGCTGGGCAGTGATTTTGACGAAATGAA-GTAAAA----TAGCTTTTCTT-CCGGCCTA-A--ATG-TAACCCCTTGGAAAATACT-Ttctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacTCAGAGACACCAAGT----------TTTTG------ACTC--TCG------CTCATCTTGAAGGTC-GT-CAAC--GAGTCTTGTGAAGATATGTGCACACGG-TCA---G--TACAT-TGGCTGGGCAGCGATTTGTACGAAATGTA-GTGAAAAG-ATGGCTTCCCTTCCCGGTCCA-A--ATG-CCACCCCTTGACAAcaagagattatagaatccgccacttagata
gi|5 : atgaaatcttcacgattattagattgGAACCACCAAGT----------TTTCA------ACTC--TGA------CTCAATTAGAACGCC-GC-CAAC--GAGTCGTGTGAA--CATGTGCACACAT-TCA---G--TGCAT-TGGCTGGACAGCGATTTCGAC-AAATGTA-GTAATA----TGGC-TCGCTTCCCGGCCTG-A--ATG-TCACCCCTTGGAAAATACT-TGGGTTTC-AATAAACAACTCAGG---TA--T--TAAGTACAG--------C--T--T---C-AAGGGTTTC--AAA------AAGTTTTTAAC----------------TC--TGG------CTCAATTAGAAGGCCGCC-AACGAGTTGTGTGAA--CAat
gi|17 : ACTATGT----------TTTTA------ACTC--TCA------CTCAATTAAAAGGCCAAC-AA-C--GAGTTTTGTGAA--GATGTGCATAcag
gi|3 : ATTTGGACGGAATCAG-GCGACACA-C-GGCTTTCATTCCTGCCGCA-A--ATGTCCCCCCTTTG-CAAATATT-TGGGTTTC-AATGGACAACTCAGGT--ATCTTCTTC---ACACACTGGC--C--T-CC---C---------C--AGAGACTCCAGGTTTTGAATGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGGTC-AACGAGTGTCGGGAA--CATGTG----CACAC---AC-AC--AAACG--TGCATGTTGTTG-------------------ACTAT-TTGGA-CCAAAT-----CA------G-GCGAAAACACGGCTTCCCTTTCCT--CCGCAAAGT-CCCCCC-----TTG--CAA----AATACTTGGATTTCCA--TGGCAACTCAGGT---ATCTTCTACACACACAGGACT------G----T-TCAGAGA---CACCAAGTTTT-AAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACA-TG--TGAACAtagtgttagccaactac
gi|10 : acacccagtttttgagtctgtcttatccaaatgtcggtcaacgagtgtcgggagcatttgcacccacataaagttgcaagttgttggctTTGACGAAATGT----GAAATG-TTGGCCTGTCTTCCCGGCCCA-A--ATT-TCACCCCTTGGAAAATACT-TGGGTTCC-ATTGAACAACTCTGGTGATATTT--TTT--GGAGAT---C--A--T-TT---CGAG----CTC--AGAAACACCAAGTTTTTAAC----------------TC--TCG------CTCACCTAAAAGGCCGTC-AACGAGTCTTGTGAA--GATGTG----CAtacacacaaaggtgcatgt
gi|15 : gaacA-GCGTAACG-TTGGCTTCTCTTGCCGGCCCG-A--ATG-CCACCCCTTGGCAA
gi|4 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcggg-GCGACACGATCGGCCTCGCATCCCG--CCA-ACAATGTCCGCCGTATGCTAAT-ACT-TGGGTTTC-AATGGACACCTCAGGT--GTCTT--CT---ACA--C---C--C--T-CTGGCC-TG----CCC--AGTGACACCAAGTTTTTGAG----------------TG--TGG------TTCATCTAGAAGACGTTC-ATCAAGTGTCCTGAA--CATGGG----GACAC---ATACC--A---GGCTGCA---AGCTGTA-G-----GCT-------G---T-TTGGAGCGAAat
gi|12 : cctagaagccggcgaacgggtgtcgtgaacaaggggacacacaccaggctccaagctgtaggctgtttggagcgaatcag-GCGAAAAG-ATGGCATCTCG-CCCGCCGCC-A--ATC-TCCGCCGTCGGCTAATACT-TGGGTTTC-AATGGACACCTCAGGT--ATCTT--CT---AC--AC---C--C--Ttcaggc
gi|13 : tacaagctgtaggctgtttggagcgaatcagAATTGCTATGGGTTTC-AATGGACAACTCAGGT--ATCTT--CT---ACTCAC---A--C--TGGC---C-TG----CCC--AGGTACACCAAGTTTTTGAG----------------TG--TGG------CTCATTTGGAATTCGGTC-AACGAGTGTCGGGAA--CATctggcctgcccnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|11 : aaaatacttGGTTTC-AATGGACACGTCAGGT--GTCTT--CT---ACACCC---C--C--TGGG---C-TG----CCC--AGTGACACCCAGTTTTTGAG----------------CG--TGG------CTCATCGAGAAGTCGGTC-AACGAGTGTCGTGAA--CATGGG----GACAC---tatgataaatgcaaatcaatagtatatat
gi|7 : tCTT--CT---ACAGAC---CGTC--TCCT------G----CTC--AGAAACAC-AAGTTTTCTAC----------------TC--TGT------CTCTTCTAGAAGGTCGTC-AACGAGTCTTGAGAA--CATGTG----TACAC---GT-TC--A---G--TGCAT-TGGCTG---G-----GAA-------CCGAT-TTTGT-CCTAAT------T------AGGCGAAAACATGGCTTCTC-TTTCTacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|8 : tG----CTC--AGAAACACCAAGTTTTTAAC----------------TC--TGG------CTCAATTACAAGGCCATC-GATGAGTCTTGTGAA--TATGTG----CACAT---GT-TC--A---G--TGCAT-TGGCTG---G-----GCA-------GTGAT-TTTGA-CGAAAT-----GA------A-GTAAAA---TAGCTTTTC-TTCC-GGCCTAAATGT-AACCCC-----TTG--GAA----AATACTTctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacTC--AGAGACACCAAGTTTTTGAC----------------TC--TCG------CTCATCTTGAAGGTCGTC-AACGAGTCTTGTGAAGATATGTG----CACAC---GG-TC--A---G--TACAT-TGGCTG---G-----GCA-------GCGAT-TTGTA-CGAAAT-----GT------A-GTGAAAAGATGGCTTCCC-TTCCCGGTCCAAATGC-CACCCC-----TTG--ACA----AATcaagagattatagaatccgccacttagata
gi|5 : atgaaatcttcacgattattagattgGAACCACCAAGTTTTCAAC----------------TC--TGA------CTCAATTAGAACGCCGCC-AACGAGTCGTGTGAA--CATGTG----CACAC---AT-TC--A---G--TGCAT-TGGCTG---G-----ACA-------GCGAT-TTCGA-C-AAAT-----GT------A-GTAATA---TGGC-TCGC-TTCCCGGCCTGAATGT-CACCCC-----TTG--GAA----AATACTTGGGTTT-CAATAAACAACTCAGGT---A----TTAAGTA------------C-AG----CTTCAAGGGTTTCAAAAAGTTTTTAACTCTGGCTCAATTAGAAGGCCGCCAACGAGTTGTGTGAACA-CA--
gi|17 : TTTTTAAC----------------TC--TCA------CTCAATTAAAAGGCCAAC-AACGAGTTTTGTGAA--GATGTG----CATAg
gi|4 : actatgCTAGAAG-CCGGCGAACGGGTGTCGTGAA--CAAGGGGACACACACCAGGC-TCCAA---GC-TGTA---GGCTGTTTG-----G-A-------GCGAA-TCAGG-CGACA-----------------CGA----TCGGCCTCGC-ATCCCG--CCAA---C-AATGTC-----C-GCCGTATGCTAATACTTGGGTTT-CAATGGACACCTCAGGT---GTCTTCTACACCC-TC-TGGC---C-TG----C-CCAGTGA---CACCAAGTTTTTGAGTGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACA-TG--GGGACACATtagtgttagccaactac
gi|12 : cTC-AACGAGTGTCGTGAA--CATGGG----GACAC---accaggctgcaagctgtaggctgtttggagcgaatcaggc
gi|8 : tacaagctgtaggctgtttggagcgaatcaggcgaaaagatggcatctcgcccgccgccaatctccgccgtcggctaatacttgggtttcaatggacacctcaggtatcttctacaccctctggcctgcccnnnnnnnnnngtTGAA--CATGTG----CACAT---AT-TC--A---acacca
gi|15 : tgaacatgctttacaacgctcagaaacaccaagtttttaactctggctcaattacaaggccatcgatgagtcttgC--A---A--TGCAT-TGACTT---T-----GCAATCATGCGCGATACTTG--TAAAATCCTCTGTCGCGGGA-GCGTAACGTTGGCTTCTC-TTGCCGGCCCGAATGC-CACCCC-----TTG--GCA----AATgtgcattggctgggcagtgattttgacgaaatgaagtaaaatagcttttcttccggcctaaatgtaaccccttggaaaatacttcaagagattatagaatccgccacttagata
gi|14 : GAT-TTCGA-CGGAAG-----TT------A-GTAAAA---TG-CTTATT-TTCCATGCCCAAA
gi|10 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgTTGA-CGAAAT-----GT----------GAAATGTTGGCCTGTC-TTCCCGGCCCAAATTT-CACCCC-----TTG--GAA----AATACTTGGGTTC-CATTGAACAACTCTGGTGATATTTTTTGGAGAT-CA-T-TT---CGAG----C-TCAGAAA---CACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGA-TG--TGCAtaacacc
gi|12 : gaac-GCGAAAAGATGGCATCTC-GCCC--GCC-----GCCAATCTCCGCCGTCG--GCT----AATACTTGGGTTT-CAATGGACACCTCAGGT---ATCTTCTACA
gi|13 : tacaagctgtaggctgtttggagcgaatcagTGGGTTT-CAATGGACAACTCAGGT---ATCTTCTAC---T-CA-CACTGGCC-TG----C-CCAGGTA---CACCAAGTTTTTGAGTGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATTA--TGccctctggcctgcccnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|11 : aaaatacttaattgctaGGTTT-CAATGGACACGTCAGGT---GTCTTCTACACCC-CC-TGGG---C-TG----C-CCAGTGA---CACCCAGTTTTTGAGCGTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACA-TG--GGGACACataaatgcaaatcaatagtatatat
gi|7 : tCTTCTACAGAC-CG-TCTC---C-TG----C-TCAGAAA---CAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACA-TG--TGTACACGTTCAGTGCATTGGCTGGGAACCGATTTTacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|8 : tG----C-TCAGAAA---CACCAAGTTTTTAACTCTGGCTCAATTACAAGGCCATCGATGAGTCTTGTGAATA-TG--TGCACATGTTCAGTGCATTGGCTGGGCAGTGATTTTGACGAAATGAAGTAAA---Agtcctaattaggcgaaaacatggcttctctttctctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaac-TCAGAGA---CACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGA-TATGTGCACACGGTCAGTACATTGGCTGGGCAGCGATTTGTACGAAATGTAGTGAA---Atagcttttcttccggcctaaatgtaaccccttggaaaatacttcaagagattatagaatccgccacttagata
gi|5 : atgaaatcttcacgattattagattgGAAC---CACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACA-TG--TGCACACATTCAGTGCATTGGCTGGACAGCGATTTCGAC-AAATGTAGagatggcttcccttcccggtccaaatgccaccccttgacaaat
gi|17 : ACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGA-TG--TGCATAtaatatggctcgcttcccggcctgaatgtcaccccttggaaaatacttgggtttcaataaacaactcaggtattaagtacagcttcaagggtttcaaaaagtttttaactctggctcaattagaaggccgccaacgagttgtgtgaacacag
gi|3 : GACACCAAGTTTT---AAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAA--CATGTGAACATAC--ACA--CAAAGGT-GCA-----Ttagtgttagccaactac
gi|2 : acacccagtttttgagtctgtcttatccaaatgtcggtcaacgagtgtcgggagcatttgcacccacataaagttgcaagttgttggctatttggacggaatcaggcgacacacggctttcattcctgccgcaaatgtcccccctttgcaaatatttgggtttcaatggacaactcaggtatcttcttcacacactggcctccccagagactccaggttttgaatgtggttcatctagaagtcggtcaannnnnnnnnnctagaagtcggtcaacgagtgtcgggaacatgtgcacacacacaaacgtgcatgttgttgactatttggaccaaatcaggcgaaaacacggcttccctttcctccgcaaagtccccccttgcaaaatacttggatttccatggcaactcaggtatcttctacacacacaggactgttcaga---AGAAGGCCGTCAACGTGTCTTGTGAA--GATGTG----CTC--ACTTTCA---GT-GTA-----TTGGCGGGGC------TGGGATGCGATTTA-GATA-AAAATAGGT-TTTCTT---C-CCTGCC---AACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTC--ATG-TA---TCATGT--ACATGGGTTGGAGT---T---C-TGAGAAA---TACCAAGTTGTTAAC--------TCT----------------GGCTCTAT-TAGAAGGCCACC-AAAGAGTCTTGTGAA--AATTTG------TTT-------ACTTT-CA---GTGC----A-TT-GACTG---GACTGGGCTGCGATTTTAACGAAAGTTA-GTAAAA---TGGCTTTTCTTCCCGAC-C-CA-A--ACGTCACCCCTTG-GAAAATACTTGGGTTTC-ATTACACATTTC-----A---------TGTATCATGTACATG------G--GT---T-G--GAGGTCTCATAAACATCAGACTTTT-A----ACTC---------TGG----------CTCAATTAGAAGACTGCC-TACGAGTTTTGTGAAGATGTG---CTCACTTTCA---GTGC-ATTG-GTTA--GGCTGCGATTTCGA--CGAAA-GTA-A-GTAAA-AT-GGCTTTTCTTCCCGGCCAAAATGTCACCCCTTG-GATAATACTTGAGTTT-CATTACACAACTCAgt
gi|5 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcattt---AGAACGCCGCCAACGAGTCGTGTGAA--CATGTG----CAC--ACATTCA---GT-GCA-----TTGGCTGGACAGCGATTTCGAC-AAATGTA-GTAATATGGCTCGC-----TT---C-CCGGCC-TGAATGT--CACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTC--AGG-TA----T---T--A-A--G----TA-----C-AGCTTCAAGGGTTTCAAAAAGTTTTTAAC--------TCT----------------GGCT-CAATTAGAAGGCCGCC-AACGAGTTGTGTGAA--CAtgtatcat
gi|10 : gaaccaccaagttttcaactctgactcaatt---AAAAGGCCGTCAACGAGTCTTGTGAA--GATGTG----CAcag
gi|7 : gaacttgacgaaatgtgaaatgttggcctgtcttcccggcccaaatttcaccccttggaaaatacttgggttccattgaacaactctggtgatattttttggagatcatttcgagctcagaaacaccaagtttttaactctcgctcacct---AGAAGGTCGTCAACGAGTCTTGAGAA--CATGTG----TAC--ACGTTCA---GT-GCA-----TTGGCTGGGAACCGATTTTGTCCTAAT-TAGGCGA-AAACATGGC-TTCTCT---T-TCT
gi|11 : tcttctacagaccgtctcctgctcagaaacacaagttttctactctgtctcttct---AGAAGTCGGTCAACGAGTGTCGTGAA--CATGGG----GAC--ACctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|17 : tggtttcaatggacacgtcaggtgtcttctacaccccctgggctgcccagtgacacccagtttttgagcgtggctcatcg---AAAAGGCCAACAACGAGTTTTGTGAA--GATGTG----CAT--Aacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|9 : actatgtttttaactctcactcaattGAAGGTCGTCAACGAGTCTTGTGAAGATATGTG----CAC--ACGGTCA---GT-ACA-----TTGGCTGGGCAGCGATTTGTACGAAATGTA-GTGA-AAAGATGGC-TTCCCT---T-CCCGGTCCAAATGC--CACCCCTTGACAAAtagtgttagccaactac
gi|8 : atgaaatcttcacgattattagattgtcagagacaccaagtttttgactctcgctcatcttAAGGCCATCGATGAGTCTTGTGAA--TATGTG----CAC--ATGTTCA---GT-GCA-----TTGGCTGGGCAGTGATTTTGACGAAATGAA-GTAA-AA---TAGC-TTTTCT---T-CCGGCC-TAAATGT--AACCCCTTGGAAAATACTTt
gi|3 : tgaacatgctttacaacgctcagaaacaccaagtttttaactctggctcaattacGTCAACGAGTGTCGGGAG--CATTTG----CACCCACATAAA---GTTGCAAGTTGTTGGCT--------ATTTGGACGGAATCAG-GCGA-CA----CAC-GGCTTTCATT-CCTGCCGCAAATGT--CCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTC--AGG-TATCTTC---TTCACA--CACTGGCCT---C---C-CCAGAGA---CTCCAGGTTTTGAATGTGGTTCATCTAGAAGTCGGTCAANNNNNNN-NNNCTAGAAGTCGGTC-AACGAGTGTCGGGAA--CATGTG------CAC-------ACACA-CAAACGTGCATGTTGTT-GACT----------------ATTTGGACCAAATCAG-GCGAAAACACGGCTTCCCTTTC---CTC-CGCA--AAGTCCCCCCTTG-CAAAATACTTGGATTTCCATGGCA--ACTC-----A---------GGTATCTTCTACA-CACACAGGA-CT--------G----TTCAGAGACACCAAGTTTT-AA----A-TG---------TGG----------CTCATCTAGGAGACGGTC-AACGAGTGTCGTGAACATGTG---AACAcaagagattatagaatccgccacttagata
gi|10 : acacccagtttttgagtctgtcttatccaaatgtcgTTGACGAAATGT----GA-AATGTTGGCCTGTCTT---C-CCGGCC-CAAATTT--CACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTT---T--GGA--GATCAT-TT---CGAGC-TCAGAAA---CACCAAGTTTTTAAC--------TCT----------------CGCT-CACCTAAAAGGCCGTC-AACGAGTCTTGTGAA--GATGTG------CAtacacacaaaggtgcatgt
gi|15 : gaacA-GCGT-AACGTTGGC-TTCTCT---TGCCGGCC-CGAATGC--CACCCCTTGGCAAA
gi|12 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcggg-GCGA-AAAGATGGC--ATCTC---G-CCCGCCGCCAATCT--CCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTC--AGG-TATCTTC---T--ACA--t
gi|4 : tacaagctgtaggctgtttggagcgaatcagAATACTTGGGTTTCAATGGACACCTC--AGG-TGTCTTC---T--ACA----CCCT-CTGGCC-TGC-CCAGTGA---CACCAAGTTTTTGAG--------TGT----------------GGTT-CATCTAGAAGACGTTC-ATCAAGTGTCCTGAA--CATGGG------GAC-------Accctctggcctgcccnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : cctagaagccggcgaacgggtgtcgtgaacaaggggacacacaccaggctccaagctgtaggctgtttggagcgaatcaggcgacacgatcggcctcgcatcccgccaacaatgtccgccgtatgctTGGGTTTCAATGGACAACTC--AGG-TATCTTC---T--AC-----TCACACTGGCC-TGC-CCAGGTA---CACCAAGTTTTTGAG--------TGT----------------GGCT-CATTTGGAATTCGGTC-AACGAGTGTCGGGAA--CATcataccaggctgcaagctgtaggctgtttggagcgaatcaggc
gi|11 : aaaatacttaattgctaGGTTTCAATGGACACGTC--AGG-TGTCTTC---T--ACA--CCCCCTGGG---C-TGC-CCAGTGA---CACCCAGTTTTTGAG--------CGT----------------GGCT-CATCGAGAAGTCGGTC-AACGAGTGTCGTGAA--CATGGG------GAC-------Atatgataaatgcaaatcaatagtatatat
gi|7 : tTTC---T--ACA--GACCGTCTC---C-TGC-TCAGAAA---CAC-AAGTTTTCTAC--------TCT----------------GTCT-CTTCTAGAAGGTCGTC-AACGAGTCTTGAGAA--CATGTG------TAC-------ACGTT-CA---GTGC----A-TT-GGCTG---GGAACCG-----ATTTTGTCCTAAT-TAGGCGAAAACATGGCTTCTCTTTCcacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|8 : tcGC-TCAGAAA---CACCAAGTTTTTAAC--------TCT----------------GGCT-CAATTACAAGGCCATC-GATGAGTCTTGTGAA--TATGTG------CAC-------ATGTT-CA---GTGC----A-TT-GGCTG---GGCAGTG-----ATTTTGACGAAATG-A-AGTAAAA--TAGCTTTTCTTCC-GGC-C-TA-A--ATGTAACCCCTTG-GAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaac-TCAGAGA---CACCAAGTTTTTGAC--------TCT----------------CGCT-CATCTTGAAGGTCGTC-AACGAGTCTTGTGAAGATATGTG------CAC-------ACGGT-CA---GTAC----A-TT-GGCTG---GGCAGCG-----ATTTGTACGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGT-C-CA-A--ATGCCACCCCTTG-ACAAATcaagagattatagaatccgccacttagata
gi|5 : atgaaatcttcacgattattagattgGAAC---CACCAAGTTTTCAAC--------TCT----------------GACT-CAATTAGAACGCCGCC-AACGAGTCGTGTGAA--CATGTG------CAC-------ACATT-CA---GTGC----A-TT-GGCTG---GACAGCG-----ATTTCGAC-AAATGTA-GTAATA---TGGC-TCGCTTCCCGGC-C-TG-A--ATGTCACCCCTTG-GAAAATACTTGGGTTTC-AATAAACAACTC-----AGGTATTAAGTACAGCTTC-A-A-GG-----G--TT--------------TCAAA------AAGTTTTT-A----ACTC---------TGG----------CTCAATTAGAAGGCCGCC-AACGAGTTGTGTGAACACA
gi|3 : A---CACCCAGTTTTTGAG--------TCT----------------GTCT-TATCCAAATGTCGGTC-AACGAGTGTCGGGAG--CATTTG------CACCCACATAAAGTTGCA---A-GT----TGTT-GGCT----------------ATTTGGACGGAATCAG-GCGACACAC-GGCTTTCATTCCTGCC-G-CA-A--ATGTCCCCCCTTT-GCAAATATTTGGGTTTC-AATGGACAACTC-----A---------GGTATCTTCTTCA-CAC-ACTGGCCT---C---------CCCAGAGACTCCAGGTTTTGAATGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGGTC-AACGAGTGTCGGGAACATGTG---CACACACACAAACGTGCATGTT-GTTG--A----CTATTTGGA--CCAAATCAG-GCGAAAACAC-GGCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTG-CAAAATACTTGGATTTCCATGG--CAACTCAG---------GTATCTTCTACACACACAGGACT------GTT---CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAAC--g
gi|17 : ACTATGTTTTTAAC--------TCT----------------CACT-CAATTAAAAGGCCAAC-AACGAGTTTTGTGAA--GATGTG------CAT-------Agagtgtcgtgaacatgtgaacatacacacaaaggtgcatgt
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAA--CAAGGGGACACACACC------AGGCT-CC---AAGC----T-GTAGGCTGTTTGG-AGCG-----AATCAGGCGACA------CGA----TCGGCCTCGCATCCCG---C-CA-ACAATGTC-CGCCGTATGCTAATACTTGGGTTTC-AATGGACACCTC-----A---------GGTGTCTTCTACA-CCC-TCTG--GC---C-T--G----CCCAGTGACACCAAGTTTTTGA----G-TG---------TGG----------TTCATCTAGAAGACGTTC-ATCAAGTGTCCTGAACATGGG---GACACATtagtgttagccaactac
gi|12 : cC-AACGAGTGTCGTGAA--CATGGG------GAC-------Aaccaggctgcaagctgtaggctgtttggagcgaatcaggc
gi|10 : tacaagctgtaggctgtttggagcgaatcaggcgaaaagatggcatctcgcccgccgccaatctccgccgtcggctaatacttgggtttcaatggacacctcaggtatcttctacaccctctggcctgcccnnnnnnnnnngttTTGACGAAATGT----GAAATGTTGGCCTGTCTTCCCGGC-C-CA-A--ATTTCACCCCTTG-GAAAATACTTGGGTTCC-ATTGAACAACTCTGGTGA---------TAT--TTTTTGGA-GAT-CAT---TT---CGA--G----CTCAGAAACACCAAGTTTTT-A----ACTC---------TCG----------CTCACCTAAAAGGCCGTC-AACGAGTCTTGTGAAGATGTG---CAcacacca
gi|15 : gaacA-GCGTAACGTTGGCTTCTCTTGCCGGC-C-CG-A--ATGCCACCCCTTG-GCAAAT
gi|12 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggCGAAAAGATGGCATCTCGCCC--GC-CGCC-A--ATCTCCGCCGTCG-GCTAATACTTGGGTTTC-AATGGACACCTC-----A---------GGTATCTTCTACA-
gi|13 : tacaagctgtaggctgtttggagcgaatcaggTGGGTTTC-AATGGACAACTC-----A---------GGTATCTTCTACT-CAC-ACTG--GC---C-T--G----CCCAGGTACACCAAGTTTTTGA----G-TG---------TGG----------CTCATTTGGAATTCGGTC-AACGAGTccctctggcctgcccnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|11 : aaaatacttaattgctaGGTTTC-AATGGACACGTC-----A---------GGTGTCTTCTACA-CCC-CCTG--GG---C-T--G----CCCAGTGACACCCAGTTTTTGA----GCG----------TGG----------CTCATCGAGAAGTCGGTC-AACGAGTGTCGTGAACATGGG---GACACgtcgggaacattatgataaatgcaaatcaatagtatatat
gi|7 : tCTTCTACA-GAC-CGTC--TC---C-T--G----CTCAGAAACAC--AAGTTTTCT----ACTC---------TGT----------CTCTTCTAGAAGGTCGTC-AACGAGTCTTGAGAACATGTG---TACACGTTCA---GTGC-ATTG-GCTG--GGAACCGATTTTGT--CCTAAT-TAGGCGAAAACAT-GGCTTCTCTTTCacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|8 : t-GAA-CATG--CTTTAC-AACG----CTCAGAAACACCAAGTTTTTAA-----CTC---------TGG----------CTCAATTACAAGGCCATC-GATGAGTCTTGTGAATATGTG---CACATGTTCA---GTGC-ATTG-GCTG--GGCAGTGATTTTGA--CGAAATGAA-GT---AAAAT-AGCTTTTCTT-CCGGCCTAAATGTAACCCCTTG-GAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tTCAGAGACACCAAGTTTTTGA-----CTC---------TCG----------CTCATCTTGAAGGTCGTC-AACGAGTCTTGTGAAGATATGTG-CACACGGTCA---GTAC-ATTG-GCTG--GGCAGCGATTTGTA--CGAAATGTA-GTGAAAAGAT-GGCTTCCCTTCCCGGTCCAAATGCCACCCCTTG-ACAAATcaagagattatagaatccgccacttagata
gi|5 : atgaaatcttcacgattattagattgGAACCACCAAGTTTTCAA-----CTC---------TGA----------CTCAATTAGAACGCCGCC-AACGAGTCGTGTGAACATGTG---CACACATTCA---GTGC-ATTG-GCTG--GACAGCGATTTCGA--C-AAATGTA-GT---AATAT-GGC-TCGCTTCCCGGCCTGAATGTCACCCCTTG-GAAAATACTTGGGTTT-CAATAAACAACTCAGGTATTAAGTACAGCTTCAAGGG------T----------TT---CAAA------AAGTTTTTAACTCTGGCTCAATTAGAAGGCCGCCAAC--G--AG--TTGTG
gi|17 : ACTATGTTTTTAA-----CTC---------TCA----------CTCAATTAAAAGGCCAAC-AACGAGTTTTGTGAAGATGTG---CATAtgaacacag
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACA-AGGGGACACACAC-CA---G-GC-TCCAAGCTGTAGGCTG----TTTGGAGCGAA-TCAG-GCGACACGATCGGCCTCGCATCCCGCCAACAATGTC-CGCCGTATGCTAATACTTGGGTTT-CAATGGACACCTCAG---------GTGTCTTCTAC--AC-CC-T-CTGGCC-TGCC---CAGTGACACCAAGTTTTTGAGTGTGGTTCATCTAGAAGA-CGTT--C--ATCAA--GTGTtagtgttagccaactac
gi|12 : cTTTGGAGCGAA-TCAG-GCGAAAAGAT-GGCATCTCG-CCCGCCGCCAATCTCCGCCGTCG-GCTAATACTTGGGTTT-CAATGGACACCTCAG---------GTATCTTCTACcctgaacatggggacacataccaggctgcaagctgtaggctgtttggagcgaatcaggc
gi|10 : tacaagctgtaggctgTTGA--CGAAATGT----GAAATGTT-GGCCTGTCTTCCCGGCCCAAATTTCACCCCTTG-GAAAATACTTGGGTTC-CATTGAACAACTCTGGTG------ATATTTTTTGGAGAT-CA-T-TT---CGAGCT---CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTC----TTGTGAAGAaccctctggcctgcccnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|15 : gaacA-GCGTAACGTT-GGCTTCTCTTGCCGGCCCGAATGCCACCCCTTG-GCAAATtgtgca
gi|13 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggTGGGTTT-CAATGGACAACTCAG---------GTATCTTCTACT----CA-CACTGGCC-TGCC---CAGGTACACCAAGTTTTTGAGTGTGGCTCATTTGGAATTCGGTCAAC--G--AG---TGTCGGGAACATT
gi|11 : aaaatacttaattgctaGGTTT-CAATGGACACGTCAG---------GTGTCTTCTAC--AC-C--CCCT---G-GGCTGCCCAGTGACACCCAGTTTTTGAGCGTGGCTCATCGAGAAGTCGGTCAAC--atgataaatgcaaatcaatagtatatat
gi|7 : tCTTCTACAGAC-CG-TCTC---C-TGCT---CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAAC--G--AG--TCTTG-AGAACA----TGTGTACACGTgagtgtcgtgaacatggggacacacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|8 : tGCT---CAGAAACACCAAGTTTTTAACTCTGGCTCAATTACAAGGCCATCG----ATGAGTCTTGTGAAtcagtgcattggctgggaaccgattttgtcctaattaggcgaaaacatggcttctctttctctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacT---CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTC----TTGTGAAGAtatgtgcacatgttcagtgcattggctgggcagtgattttgacgaaatgaagtaaaatagcttttcttccggcctaaatgtaaccccttggaaaatacttcaagagattatagaatccgccacttagata
gi|17 : atgaaatcttcacgattattagattgACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAAC--G--AGTTTTGTGAAGAtatgtgcacacggtcagtacattggctgggcagcgatttgtacgaaatgtagtgaaaagatggcttcccttcccggtccaaatgccaccccttgacaaat
gi|16 : --ACCAG--CTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCATtgtgcatatagtgttagccaactac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AAAAACACCAAGTTTTTGACTGTGCCTCAATTAAAAACCCTCATACAATTGCATCTTTCTGACCCCATTTGTTGTGCTAATATCTATTATCAGATTTTAAAGAAAGTTGGTAAAATGTGCCTTTGTCTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTGTGTCATGTATGTGGTCTGGCTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAAATT
Alignments
lowQualScore : 2222 888888888888888888888888888 111 11111 1111111 11111 11 88888888888888888888 111 55555555555555555555555555 1111 111 1111 55555555555555555555555555 1111111 4444444444444 1 111 777777777777777777777777777 11 111 33333 1 2 1 1 1 1111 4 11 1 1 1 1 33 1 1 11 2 222 22 1 33333333 22 333 2 33333 1 11 1 11 1 1 222 2 22222222 22 222 1 2 1 1 1 1 1 1111 1 4 1 1 11 2
lowQualScore : 0 0 6 3333 6 4 8 111111111111111111111111111 2 44 1 000 66 1 5 44444 6666666 1 5 1 00000 1 88 1 1 1 7 00 1 3 6 88888888888888888888 2 000 88888888888888888888888888 2 3333 1 5 1 000 2222 5 88888888888888888888888888 5 66 1 6666666 2 44 6666666666666 2 0 1 3 2 99 1 2 111 4 5 777777777777777777777777777 3 6 2 1 1 2 5 11 1 6 777 33333 8 3 5 0 1 6 5 6 6 5 6 1 6 1 5 9999 77 0 22 77 7 6 7 5 5 00 6 7 6 6 6 5 22 7 555 1 4 3 77 2 5 33333333 77 4 333 1 6 00000 1 3 4 55 5 3 88 5 3 99 5 66 22 55 3 88 777 1 6 8 1 0 7 6 0 99999999 77 4 000 0 0 1 5 6 5 6 7 5 5 8888 5 0 7 6 6 5 6 6 6 6 6 1 1 6 3 88 2 4 88 0 4 2
lowQualScore : . . . .... . . . ........................... . .. . ... .. . . ..... ....... . . . ..... . .. . . . . .. . . . .................... . ... .......................... . .... . . . ... .... . .......................... . .. . ....... . .. ............. . . . . . .. . . ... . . ........................... . . . . . . . .. . . ... ..... . . . . . . . . . . . . . . . .... .. . .. .. . . . . . .. . . . . . . .. . ... . . . .. . . ........ .. . ... . . ..... . . . .. . . .. . . .. . .. .. .. . .. ... . . . . . . . . ........ .. . ... . . . . . . . . . . .... . . . . . . . . . . . . . . . .. . . .. . . .
lowQualScore : 7 7 7 7777 7 0 8 222222222222222222222222222 8 88 0 222 99 7 7 33333 7777777 0 0 4 88888 1 22 1 1 0 8 33 4 2 0 44444444444444444444 7 000 11111111111111111111111111 3 3333 0 7 0 000 1111 7 44444444444444444444444444 0 99 0 7777777 4 33 3333333333333 7 1 0 4 7 55 0 5 777 0 2 555555555555555555555555555 3 0 5 0 4 8 0 00 4 5 555 33333 3 7 5 0 0 0 0 0 0 0 0 0 0 0 0 0000 00 0 00 00 0 0 0 0 0 00 0 0 0 0 0 0 00 5 000 0 0 0 55 5 5 55555555 55 0 000 0 7 77777 0 3 7 00 0 7 33 3 3 33 4 44 44 88 0 00 000 0 5 8 0 2 0 7 0 00000000 55 0 555 5 0 0 0 0 0 0 0 0 0 0000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 00 5 0 55 0 0 5
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACAT------GACCGT-CT-CTG-----CTCAGAAACACCAAGTTTTTAACTCTCGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAA--NATGTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCAATGN-ACAACTCAGGTATCTTNTACA-AC-CTG--CTC-G-----CTCAGAAA---CACCAAGTTTTTAACTCTGGCTCGA-------------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT--TTTGACGAAAT-----NTAGCGAAA-G--------T--GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANGT---ATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTNGCTCANCTAGAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGC-----TGGGCTGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCNGGGATTTGGAGCGAA-TCAGGCGAAAAGAT-GGCNTCTCGTCCCG-CCCGA--ATGTC-CCCCTCG-GCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGTAGGCNGCGATTTNGGGCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTCTCTTCCCGGCCCGAATGTCACCCCTTGGCAAATACTTGGGTTTCAATGGACAACTCAGGTATCTTCTACA-------GACCGT-CT-CTG-----CCCAGAGACACCAAGTTTTTAACTCTGGCTCANCTAGAAGGCCGTCAACGAGTCTTGTGAA--CATGTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGNTGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGNAAATACTTGGGTTTCAATGG-ACAACTCAGGTATCTTCTACACACCCTG--CTC-G-----CTCAGAGA---CACCAAGTTTTTAACTCTGGCTCAN-------------------------CTAGAAGGCCG---TCAACGAGTNTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT--TTNGACGAAAT-----GTAGCGAAA-G--------T--GGCTTCTCTTCCCGGCCCAAATGCCACCCCTTGGAAAATACTTGGGTTTCAATGGACANCTCAGGT---ATCTTCTACACAC-CGTGNTCT-G-----CT----CAGAGACACCAAGTTTTTAACTCTGGCTCANCTAGAAGGCCGTCAACGAGTCTCGTGAACATGTG--CACACGTTCA---GTGCATTGGC-----TGGGCAGCGATTTCGACGAAATGT-AGTNAAAGAAGGCCGTCAACGAGTCTCGTGAACATGTGCACACGTTCAGTGCATTGGCTGGGCAGCGATTTNGACGAAATGTAGCGAAAAGNTGGCTTCCCTTCCNGCC-CGAATGTCACCCCTTGGNAAATACTTGGGTTTCAATGGACAACTCAGGTATCTTCTACAGACCGTACTCTGCTCAGAGACACCAAGTTTTTGACTCTGGCTCATCTAGAAGGCCGTC-AACGAGTNTCGTGAACATGTG--CACACGTTCAG--TGCATTGGCTG--GGCAGCGATTTNGA-CGAAATGTAGCGAAAAGNT-GGCTTCTCTTCCCGGCCCGA--ATGTCACCCCTTG-GNAAATACTTGGGTTTCAATGGACAACTCAGGTATCTTCTACANACCNTGNTCTGCTCAGAGACACCAAGTTTTTGAGCTCTGGCTCANCTAGAAGGCCGTCAACGAGTNTCGTGAACATGTGCACACGT-TCAG--TGCATTGGCTG--GGCAGCGATTTCGA-CGAAATGNAGCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATGGACAACTCAGGTATCTTCTACAGACCAT-CTCTGCTCAGAGACACCAAGTTTTTGACTCTGGCTCATCTAGAAGGCCGTCAACGTCAGTTGTGAAGAACATTTTTNTGTNCACGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-------GACCATACT-CAG-----CTCAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAA--TATGTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGC-ACAACTCAGGTTACTTTAACAGACCCTA--CTCAG-----TTCAGAAA---CACCAAATTTTTAACTCTCACTCGT-------------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT--TTTGACGAAAT-----GTAGCGAAA-AGT------T--GGCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGGT---AGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGC-----TGGGCAGCGATTTTTGCGAAATGT-AGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCGA--ATGCCACCCCTTG-GCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTTTGG-CGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAAT-----GT---GAAATG--------TT-GGCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACAC
gi|12 : tTTTGGAGCGAA-TCAGGCGAAAAGAT-GGCATCTCG-CCCGCCGCCA--ATCTCCGCCGTCG-GCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCacaccaggctnnnnnnnnnncaggctgcagtctgtaggctgtttggagcgaatcaggcgacacgaac
gi|12 : tacaagctgtaggctgTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGG-ACACCTCAGGTATCTTCT-----------------------------A---CACC----------CTCTGGCCTGC-------------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GAT--TTCGACGGAAG-----TTAGTAAAA----------T--G-CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgCA---ATG----CAT-TGACTTT-----GC-----------AATCATGCGC-GATACTTGTA--AAATCCTCTGTCGCGGGA-GCGTAACGTT--GGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|15 : A-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tacACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAA--GATGTGCAT--Aag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------T-------GC-GAT--TGCGACGAAAG-----TTAATACAA----------T--GGCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGT---ATCATGTAAA------TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAAT------GA------T-TTGGAGGATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAA--GATGTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCA-TAACACAACTCATGTATCATGTACATG----G--GTT-GGAGTTCTGAGAAA---TACCAAGTTGTTAACTCTGGCTCTA-------------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------T-------GC-GAT--TTTAACGAAAG-----TTAGTAAAA----------T--GGCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGT---ATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGT-----TAGGCTGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGGGTTGGAG-GT-CT-C----------ATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAA--GATGTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-AGTAAAA--TGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTAC-ACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAG--CATTTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACACAC-GGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGG-ACAACTCAGGTATCTTCTTCACACACTGGCCTC-------CCCAGAGA---CTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTGA---------------------------C-TAT--TTGGACCAAAT-----CAGGCGAAA-A--------CACGGCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGGT---ATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCGAA-TCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTC-CGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG---TTTGGAGCGAAgt
gi|5 : cCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAA--CATGTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAA-ACAACTCAGGTATTAAGTACA------G--CT---------TCAAGGGTTTCAAAAAGTTTTTAACTCTGGCTCAA-------------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : gaacAAAAA---CACCAAGTTTTTGACTGTGCCTCAA-------------------------TTA-AAAACC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTA-------TCAGAT--TTTAAAGAAAG-----TTGGTAAAATG--------T--GCCTTTG--TCTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTGT---GTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-------GACCGT-CTCCTG-----CTCAGAAACA-CAAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAA--CATGTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : C-G-----CTCAGAAA---CACCAAGTTTTTAACTCTGGCTCAA-------------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GT-GAT--TTTGACGAAAT-----GAAGT-AAA-A--------T--AGCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaaCAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 7777777777777777777 11111 1111111 11111 1111111111111111111111111111 555555555555555555555555555 1111 111 1111 555555555555555555555555555 1111111 44444444444 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 333 1 1 11 1 3333 1 2 11 111 1 111 222 11 1
lowQualScore : 0 0 1 8888888888888888888 88 1 77 77 1 5 44444 6666666 1 5 1 00000 222 9 1 1 4 1 1 1 5555555555555555555555555555 3 999999999999999999999999999 2 3333 5 1 000 2222 5 999999999999999999999999999 5 5 3333333 2 44 99999999999 4 2 0 1 22 1 111 1 1 888888888888888888888888888 3 1 1 2 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 1 777 6 3 3 1 11 3 6666 3 6 6 3 1 11 88 2 1 0 0 7 6 444 2 1 444 666 4 3 1 1 22 1 1 88 5 1 1
lowQualScore : . . . ................... .. . .. .. . . ..... ....... . . . ..... ... . . . . . . . ............................ . ........................... . .... . . ... .... . ........................... . . ....... . .. ........... . . . . .. . ... . . ........................... . . . . .. . ... ..... . . . . . . . . .. . . .. . ... . . ... . . . . .. . .... . . . . . .. .. . . . . . . ... . . ... ... . . . . .. . . .. . . .
lowQualScore : 7 7 0 5555555555555555555 33 0 99 99 7 7 33333 7777777 0 0 4 88888 333 4 1 1 0 0 4 0 3333333333333333333333333333 6 333333333333333333333333333 3 3333 7 0 000 1111 7 111111111111111111111111111 0 0 8888888 4 33 22222222222 4 7 1 0 77 0 777 0 0 333333333333333333333333333 9 0 0 2 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 0 000 7 3 3 0 00 3 7777 3 7 7 7 4 22 22 0 0 2 7 3 7 000 3 0 333 333 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTC-TGGAGG-CTCAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNTACA-G--C-CT-----G--C-TC-G-----CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT-TTTGACGAAATN-----TAGCGAAA--G--------T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANGT---ATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCC-CGCCG-C-AATGTC-CGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGGGCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTC-TG-----CTCAGAAACACCAAGTTTTTAACTCTCGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCAATGNACAACTCAGGTATCTTNTACA-A--C-CT-----G--C-TC-G-----CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT-TTTGACGAAATN-----TAGCGAAA--G--------T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANGT---ATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTNGCTCANCTAGAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCNGGGATTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCC-CGCC--CGAATGTC-CCCC-TCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGTAGGCNGCGATTT-NGGGCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC-AG-----CTCAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTAACA-GACC-CT-----A--C-TCAG-----TTCAGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT-TTTGACGAAATG-----TAGCGAAA--AGT------T-GGCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGGT---AGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCC--CGAATGCCACCCC-TTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-GGCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAATG-----T---GAAAT-G--------TTGGCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAGGCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CC-CGCCG-CCAATCTC-CGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTA-------------------------------------CACC----------CTCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GAT-TTCGACGGAAGT-----TAGTAAAA-----------T-G-CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgCA---ATG----CAT-TGACTTT-----GC-----------AATCATGCGC-GATACTTG-TAAAATCCTCTGTCGCGGGA--GCGTAACGTT-GGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|15 : A-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------T-------GC-GAT-TGCGACGAAAGT-----TAATACAA-----------T-GGCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGT---ATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TT-TGGAGGATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGTACA-------T-----G--GGTT-GGAGTTCTGAGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------T-------GC-GAT-TTTAACGAAAGT-----TAGTAAAA-----------T-GGCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGT---ATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT-----TGGAGGTCTCATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACA--CACT-----GGCC-TC-------CCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTG---------------------------AC-TAT-TTGGACCAAATC-----AGGCGAAAACA--------C-GGCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGGT---ATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCC-CGCCAAC-AATGTC-CGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG---TTT-GGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGTACA-G--C-TTCAAGGG--T-T---------TCAAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTA-------TCAGAT-TTTAAAGAAAGT-----TGGTAAAAT-G--------T-GCCTTTG--TCTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTGT---GTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG-----CTCAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : TTTACA-A--C----------------G-----CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GT-GAT-TTTGACGAAATG-----AAGT-AAA--A--------T-AGCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgcTCAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
Alignments
lowQualScore : 555555555555555555 11111 1111111 11111 11 99999999999999999999999 555555555555555555555555555 1111 111 1111 555555555555555555555555555 1111111 44444444444 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 222 1 1 11 11 33 11 111 1 11111111111 11 1
lowQualScore : 0 0 1 222222222222222222 8 22 1 77 77 1 5 44444 6666666 1 5 1 00000 222 9 1 1 1 1 1 1 11 33333333333333333333333 3 999999999999999999999999999 2 3333 5 1 000 2222 5 999999999999999999999999999 5 5 3333333 2 44 99999999999 4 2 0 1 22 1 111 1 1 888888888888888888888888888 3 5 1 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 333 6 3 3 1 11 88 33 3 1 11 88 2 1 0 0 7 6 444 2 99999999999 1 1 1 1 22 1 1 88 5 1 1
lowQualScore : . . . .................. . .. . .. .. . . ..... ....... . . . ..... ... . . . . . . . .. ....................... . ........................... . .... . . ... .... . ........................... . . ....... . .. ........... . . . . .. . ... . . ........................... . . . .. . ... ..... . . . . . . . . .. . . .. . ... . ... . . . . .. .. .. . . .. .. . . . . . . ... . ........... . . . . .. . . .. . . .
lowQualScore : 7 7 0 555555555555555555 0 44 0 99 99 7 7 33333 7777777 0 0 4 88888 333 4 1 1 0 0 4 0 00 99999999999999999999999 6 333333333333333333333333333 3 3333 7 0 000 1111 7 111111111111111111111111111 0 0 8888888 4 33 22222222222 4 7 1 0 77 0 777 0 0 333333333333333333333333333 9 3 0 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 333 7 3 3 0 00 33 33 7 4 22 22 0 0 2 7 3 7 000 0 77777777777 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--G--NCT-----GG--CTC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT-TTTGACGAAATN-----TAGCGAAA--G--------T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCTGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--G--CCT-----G---CTC-GCTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT-TTTGACGAAATN-----TAGCGAAA--G--------T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC----AG-CT-CAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTA--ACA--GACCCT-----A---CTCAGTTCAGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GC-GAT-TTTGACGAAATG-----TAGCGAAA--AGT------T-GGCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGG---TAGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCG--AATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-G-GCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAATG-----T---GAAAT-G--------TTGGCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAG-GCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CCCG--CCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCT--A--------------------------------CACC----------CTCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GAT-TTCGACGGAAGT-----TAGTAAAA-----------T-G-CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgCA---ATG----CAT-TGACTTT-----GC-----------AATCATGCGC-GATACTTG-TAAAATCCTCTGTCGCGGGA--GCGTAACGTT-GGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|15 : A-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------T-------GC-GAT-TGCGACGAAAGT-----TAATACAA-----------T-GGCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATG---TATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TTTGGAGG-ATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGT--ACATGG--GTT-----GGAGTTC---TGAGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------T-------GC-GAT-TTTAACGAAAGT-----TAGTAAAA-----------T-GGCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATG---TATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT----TGGAGGTCT-CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACA--C--ACT-----GGC-CTC--CCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTG---------------------------AC-TAT-TTGGACCAAATC-----AGGCGAAAACA--------C-GGCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGG---TATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTCCGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG----TT-TGGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGT--ACA--G--CTTCAAGGG---TT----TCAAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTA-------TCAGAT-TTTAAAGAAAGT-----TGGTAAAAT-G--------T-GCCTTTG--TCTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTG---TGTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG----CT-CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : C-GCTCAGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------A-------GT-GAT-TTTGACGAAATG-----AAGT-AAA--A--------T-AGCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaaT-CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
Alignments
lowQualScore : 555555555555555555 11111 1111111 11 777777777777777777777 555555555555555555555555555 1111 111 1111 11111 4444444444444444444 111111111111 44444444444 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 222 1 1 11 11 33 11 111 1 11111111111 11 1
lowQualScore : 0 0 1 666666666666666666 8 22 1 77 77 1 5 44444 6666666 1 5 5 777777 222 8 1 1 1 1 1 1 11 111111111111111111111 3 999999999999999999999999999 2 3333 5 1 000 2222 5 44444 4 7777777777777777777 5 5 555555555555 55555555555 4 2 0 1 22 1 111 1 1 888888888888888888888888888 3 5 1 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 333 6 3 3 1 11 88 33 3 1 11 88 2 1 0 0 7 6 444 2 99999999999 1 1 1 1 22 1 1 88 5 1 1
lowQualScore : . . . .................. . .. . .. .. . . ..... ....... . . . ...... ... . . . . . . . .. ..................... . ........................... . .... . . ... .... . ..... . ................... . . ............ ........... . . . . .. . ... . . ........................... . . . .. . ... ..... . . . . . . . . .. . . .. . ... . ... . . . . .. .. .. . . .. .. . . . . . . ... . ........... . . . . .. . . .. . . .
lowQualScore : 7 7 0 000000000000000000 0 44 0 99 99 7 7 33333 7777777 0 0 6 888888 333 4 1 1 0 0 4 0 00 666666666666666666666 6 333333333333333333333333333 3 3333 7 0 000 1111 7 33333 3 6666666666666666666 0 0 777777777777 44444444444 4 7 1 0 77 0 777 0 0 333333333333333333333333333 9 3 0 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 333 7 3 3 0 00 33 33 7 4 22 22 0 0 2 7 3 7 000 0 77777777777 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT----G-G-C-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-T-----GGCTGGGC-----------A-------GC-GAT-TTTGACGAAATN-----TAGTGAAA--G--------T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GNCT----G-G-C-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-T-----GGCTGGGC-----------A-------GC-GAT-TTTGACGAAATN-----TAGCGAAA--G--------T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC----AG-CT-CAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTA--ACA--GACC----CTA-C-TCAGTTCAGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-T-----GGCTGGGC-----------A-------GC-GAT-TTTGACGAAATG-----TAGCGAAA--AGT------T-GGCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGG---TAGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCG--AATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-G-GCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAATG-----T---GAAAT-G--------TTGGCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAG-GCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CCCG--CCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCT--A------------------------------CACC----------CTCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GAT-TTCGACGGAAGT-----TAGTAAAA-----------T-G-CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgCA---ATG----CAT-T-----GACTTTGC-----------AATCATGCGC-GATACTTG-TAAAATCCTCTGTCGCGGGA--GCGTAACGTT-GGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|15 : A-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-T-----GGCTGGCT-----------T-------GC-GAT-TGCGACGAAAGT-----TAATACAA-----------T-GGCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATG---TATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TTTGGAGG-ATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-T-------------AAAAATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGT--ACATGGGTT----G-GAG-TT--CTGAGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------T-------GC-GAT-TTTAACGAAAGT-----TAGT-AAA--A--------T-GGCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATG---TATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT-T---GGAGGTCT-CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACA--CACT----G-G-CCTC--CCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGT-----TGTTG----------------------AC-TAT-TTGGACCAAATC-----AGGCGAAAACA--------C-GGCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGG---TATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTCCGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG----TT-TGGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGT--ACA--GCTTCAAGG-G-T-T----TCAAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-T-----TGTTGTGCTAATATCTATTA-------TCAGAT-TTTAAAGAAAGT-----TGGTAAAAT-G--------T-GCCTTTG--TCTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTG---TGTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG----CT-CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : --CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-T-----GGCTGGGC-----------A-------GT-GAT-TTTGACGAAATG-----AAGT-AAA--A--------T-AGCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacgT-CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
Alignments
lowQualScore : 555555555555555555 11111 1111111 11111 11 777777777777777777777 555555555555555555555555555 1111 111 1111 44444444444444444444 33333 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 222 1 1 11 11 33 11 111 1 11111111111 11 1
lowQualScore : 0 0 1 666666666666666666 8 22 1 77 77 1 5 44444 6666666 1 5 1 00000 222 9 1 1 1 1 1 1 11 666666666666666666666 3 999999999999999999999999999 2 3333 5 1 111 4444 6 99999999999999999999 5 999 4 88888 5 4 2 22 1 111 1 1 888888888888888888888888888 3 5 1 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 333 6 3 3 1 11 88 33 3 1 11 88 2 1 0 0 7 6 444 2 99999999999 1 1 1 1 22 1 1 88 5 1 1
lowQualScore : . . . .................. . .. . .. .. . . ..... ....... . . . ..... ... . . . . . . . .. ..................... . ........................... . .... . . ... .... . .................... . ... . ..... . . . .. . ... . . ........................... . . . .. . ... ..... . . . . . . . . .. . . .. . ... . ... . . . . .. .. .. . . .. .. . . . . . . ... . ........... . . . . .. . . .. . . .
lowQualScore : 7 7 0 000000000000000000 0 44 0 99 99 7 7 33333 7777777 0 0 4 88888 333 4 1 1 0 0 4 0 00 222222222222222222222 6 333333333333333333333333333 3 3333 7 0 777 2222 7 77777777777777777777 7 444 2 55555 0 2 2 77 0 777 0 0 333333333333333333333333333 9 3 0 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 333 7 3 3 0 00 33 33 7 4 22 22 0 0 2 7 3 7 000 0 77777777777 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--T-GGCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAATNTAGTGAAA--G--T-GGCTTCTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC----AG-CT-CAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTA--ACA--GACC-----CTAC-TCAGTTCAGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAATGTAGCGAAA--AGTT-GGCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGG---TAGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCG--AATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-G-GCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAAT---GTGAAAT-G--TTGGCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAG-GCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CCCG--CCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCT--A------------------------------CACC----------CTCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GATTTCGACGGAAGTTAGTAAAA-----T-G-CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgA-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------TGC-GATTGCGACGAAAGTTAATACAA-----T-GGCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATG---TATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TTTGGAGG-ATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGT--ACATGGGTT-----G-GAGTT--CTGAGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------TGC-GATTTTAACGAAAGTTAGTAAAA-----T-GGCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATG---TATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT-T---GGAGGTCT-CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACA--CACT-----G-GCCTC--CCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTG--------------------AC-TATTTGGACCAAATCAGGCGAAAACA--C-GGCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGG---TATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTCCGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG----TT-TGGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGT--ACA--G-CTTCAAGG-GT-T----TCAAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTATCAGATTTTAAAGAAAGTTGGTAAAAT-G--T-GCCTTTG--TCTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTG---TGTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG----CT-CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : --CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGT-GATTTTGACGAAATGAAGT-AAA--A--T-AGCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacgT-CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
Alignments
lowQualScore : 555555555555555555 11111 1111111 11111 11 777777777777777777777 555555555555555555555555555 1111 111 1111 44444444444444444444 2 11111 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 222 1 1 11 11 33 11 111 1 11111111111 11 1
lowQualScore : 0 0 1 666666666666666666 8 22 1 77 77 1 5 44444 6666666 1 5 1 00000 222 9 1 1 1 1 1 1 11 666666666666666666666 3 999999999999999999999999999 2 3333 5 1 111 4444 6 99999999999999999999 5 666 1 44444 5 1 2 22 1 111 1 1 888888888888888888888888888 3 5 1 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 333 6 3 3 1 11 88 33 3 1 11 88 2 1 0 0 7 6 444 2 99999999999 1 1 1 1 22 1 1 88 5 1 1
lowQualScore : . . . .................. . .. . .. .. . . ..... ....... . . . ..... ... . . . . . . . .. ..................... . ........................... . .... . . ... .... . .................... . ... . ..... . . . .. . ... . . ........................... . . . .. . ... ..... . . . . . . . . .. . . .. . ... . ... . . . . .. .. .. . . .. .. . . . . . . ... . ........... . . . . .. . . .. . . .
lowQualScore : 7 7 0 000000000000000000 0 44 0 99 99 7 7 33333 7777777 0 0 4 88888 333 4 1 1 0 0 4 0 00 222222222222222222222 6 333333333333333333333333333 3 3333 7 0 777 2222 7 77777777777777777777 7 555 2 99999 0 0 2 77 0 777 0 0 333333333333333333333333333 9 3 0 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 333 7 3 3 0 00 33 33 7 4 22 22 0 0 2 7 3 7 000 0 77777777777 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC----AG-CT-CAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTA--ACA--GACC-----CTAC-TCAGTTCAGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAATGTAGCGAAA--AGTTG-GCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGG---TAGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCG--AATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-G-GCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAAT---GTGAAA--TGTTG-GCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAG-GCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CCCG--CCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCT--A------------------------------CACC----------CTCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GATTTCGACGGAAGTTAGT-AAA--A--TG--CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgA-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------TGC-GATTGCGACGAAAGTTAAT-ACA--A--TG-GCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATG---TATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TTTGGAGG-ATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGT--ACATGGGTT-----G-GAGTT--CTGAGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------TGC-GATTTTAACGAAAGTTAGT-AAA--A--TG-GCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATG---TATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT-T---GGAGGTCT-CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACA--CACT-----G-GCCTC--CCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTG--------------------AC-TATTTGGACCAAATCAGGCGAAAACA--CG-GCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGG---TATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTCCGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG----TT-TGGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGT--ACA--G-CTTCAAGG-GT-T----TCAAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTATCAGATTTTAAAGAAAGTTGGT-AAA--A--TGTGCCTTTGT-CTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTG---TGTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG----CT-CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : --CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGT-GATTTTGACGAAATGAAGT-AAA--A--TA-GCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacgT-CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
Alignments
lowQualScore : 555555555555555555 11111 1111111 11111 11 777777777777777777777 555555555555555555555555555 1111 111 1111 44444444444444444444 2 11111 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 222 1 1 11 11 33 11 111 1 11111111111 11 1
lowQualScore : 0 0 1 666666666666666666 8 22 1 77 77 1 5 44444 6666666 1 5 1 00000 222 9 1 1 1 1 1 1 11 666666666666666666666 3 999999999999999999999999999 2 3333 5 1 111 4444 6 99999999999999999999 5 666 1 44444 5 1 2 22 1 111 1 1 888888888888888888888888888 3 5 1 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 333 6 3 3 1 11 88 33 3 1 11 88 2 1 0 0 7 6 444 2 99999999999 1 1 1 1 22 1 1 88 5 1 1
lowQualScore : . . . .................. . .. . .. .. . . ..... ....... . . . ..... ... . . . . . . . .. ..................... . ........................... . .... . . ... .... . .................... . ... . ..... . . . .. . ... . . ........................... . . . .. . ... ..... . . . . . . . . .. . . .. . ... . ... . . . . .. .. .. . . .. .. . . . . . . ... . ........... . . . . .. . . .. . . .
lowQualScore : 7 7 0 000000000000000000 0 44 0 99 99 7 7 33333 7777777 0 0 4 88888 333 4 1 1 0 0 4 0 00 222222222222222222222 6 333333333333333333333333333 3 3333 7 0 777 2222 7 77777777777777777777 7 555 2 99999 0 0 2 77 0 777 0 0 333333333333333333333333333 9 3 0 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 333 7 3 3 0 00 33 33 7 4 22 22 0 0 2 7 3 7 000 0 77777777777 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC----AG-CT-CAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTA--ACA--GACC-----CTAC-TCAGTTCAGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAATGTAGCGAAA--AGTTG-GCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGG---TAGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCG--AATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-G-GCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAAT---GTGAAA--TGTTG-GCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAG-GCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CCCG--CCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCT--A------------------------------CACC----------CTCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GATTTCGACGGAAGTTAGT-AAA--A--TG--CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgA-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------TGC-GATTGCGACGAAAGTTAAT-ACA--A--TG-GCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATG---TATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TTTGGAGG-ATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGT--ACATGGGTT-----G-GAGTT--CTGAGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------TGC-GATTTTAACGAAAGTTAGT-AAA--A--TG-GCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATG---TATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT-T---GGAGGTCT-CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACA--CACT-----G-GCCTC--CCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTG--------------------AC-TATTTGGACCAAATCAGGCGAAAACA--CG-GCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGG---TATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTCCGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG----TT-TGGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGT--ACA--G-CTTCAAGG-GT-T----TCAAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTATCAGATTTTAAAGAAAGTTGGT-AAA--A--TGTGCCTTTGT-CTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTG---TGTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG----CT-CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : --CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGT-GATTTTGACGAAATGAAGT-AAA--A--TA-GCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgctttacaacgT-CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata
blockSeqs : A TGGGTTGGAGGT G TG G AT CC T T AGTTG TGGGATG G G G TCAG CGA G C T A G T C TC TGGGTTGGAGTTC A ATCTAGAAGTCGGTCAANNNNNNNNNN N NNGT T G AAC ACCC G TGCTAATATCTATTA A GTT G TGT T G T AA G TGA T T GAGATCATTTCGAGCT T C C AA T AAG TGGGA A . A . G G A G GA C . GC C A T . G . C A AT . CC C C TG C A T A G NNN C CAGTCTGTAG T G C T TT C A TT . T C
blockSeqs : A GACCGTCTCCTG . GG G . . T . . TG A . A TCAG CGT G G C T C A G . GCTTCAAGGGTT G GC G A . T . . . GACTGGGCT . GTT G ACA . A T CA T . A G AATGATTTGGAGGATG T C A . T . . C T . G . . C G . AC A T GT T A T A G A T TTTGGA
blockSeqs : T TGATTTGGAGG . GT C . . A . . AG C . G TGTA CGA T A G T C T C . CACTGGCCTCC A TA T G . A . . . GCTT . GTT . A . T T CA T . A G CATGGGTTGGAGGTCT T T T . A . A TG T A A
blockSeqs : . GA C . . A . . AC G . G TTAG CGA C A T A G A G . . A AA G G . T . . . GGCA . TCA . A . T C AG G . T C CACACACAGGACTGTT C G A . T
blockSeqs : GT C . . G . . AG C . C TGTA TGA G A T A A . AA G A . G . . . . . GTT . A . C T G T . A G TGTGGTCTGGCTTTCA A G T .
blockSeqs : CG G . . G . . . T . G GTA GT . G T . AA . . . . TGA . A . T T . G A
blockSeqs : G . . . T . A C T . A . T .
blockSeqs : . .
blockSeqCons : CTGGTC*************** A****
originalCons : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACA--GACT-----G-GC-TC--CTCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
finalCons : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT--ACACTGGTC---------------TCAGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAAA----TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANG---TATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Alignments
lowQualScore : 555555555555555555 11111 1111111 11111 1111 777777777777777777777777777777 555555555555555555555555555 1111 111 1111 44444444444444444444 2 11111 111 888888888888888888888888888 111 33333 1 1 1 1 11 1 11 111 222 1 1 11 11 33 11 111 1 11111111111 11 1
lowQualScore : 0 0 1 666666666666666666 8 22 1 77 77 1 5 44444 6666666 1 5 1 00000 222 9 1 1 1 1 1 1 4444 888888888888888888888888888888 3 1 0 999999999999999999999999999 2 3333 5 1 111 4444 6 99999999999999999999 5 666 1 44444 5 1 2 22 1 111 1 1 888888888888888888888888888 3 5 1 99 1 777 33333 3 5 5 5 5 1 1 1 88 2 5 77 1 999 7 333 6 3 3 1 11 88 33 3 1 11 88 2 1 0 0 7 6 444 2 99999999999 1 1 1 1 22 1 1 88 5 1 1
lowQualScore : . . . .................. . .. . .. .. . . ..... ....... . . . ..... ... . . . . . . . .... .............................. . . . ........................... . .... . . ... .... . .................... . ... . ..... . . . .. . ... . . ........................... . . . .. . ... ..... . . . . . . . . .. . . .. . ... . ... . . . . .. .. .. . . .. .. . . . . . . ... . ........... . . . . .. . . .. . . .
lowQualScore : 7 7 0 000000000000000000 0 44 0 99 99 7 7 33333 7777777 0 0 4 88888 333 4 1 1 0 0 4 0 2222 777777777777777777777777777777 6 6 7 333333333333333333333333333 3 3333 7 0 777 2222 7 77777777777777777777 7 555 2 99999 0 0 2 77 0 777 0 0 333333333333333333333333333 9 3 0 22 0 555 33333 7 5 5 5 0 0 0 0 00 5 5 55 0 555 3 333 7 3 3 0 00 33 33 7 4 22 22 0 0 2 7 3 7 000 0 77777777777 0 0 0 0 00 0 0 55 5 0 0
consensus : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT----ACA----C----T-----GG---TC---TC---AGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANGT---ATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
Reference ( family-3160 ) : CTTTTCTTCCCGGCCCGAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACAACTCATGTATCNTGTACATGACCGT-CTCCGGAGG-CT-CAGAAACACCAAGTTTTTAACTCTGGCTCATCTAGAAGGCCGTCAACGAGTCTTGTGAANAT--GTGCAC--ACGTTCAGT-GCA-----TTGGCTGGGC----A-GCGATTTNGA-CGAAATGTA-GCGAAAAGATGGCTTCTCTTCCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCANTGNACAACTCAGGTATCTTNT----ACA----C----T-----GG---TC---TC---AGAAACACCAAGTTTTTAACTCTGGCTC-----GA--------------------CTAGAAGGCCG---TCAACGAGTCTCGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAANTTAGTGAAA--A--TG-GCTTTTCTTCCCGGCCCAAATGTCACCCCTTGGAAAATACTTGGGTTTCATTGNACAACTCANGT---ATCNTNTACA-AC-CGTGNTCT-G-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCANCTAGAAGGCCGTCAACGAGTTTTGTGAAGATGTG--CACACNTTCA---GTGCATTGGCTGGGC-----TGCGATTTCGACGAAATGTAAGCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGCGAACGGGTNTCGTGAACANGNGGACACACGCTCAGGCTNCNTTGGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCNTCTCGTCCCG--CCG-CAATGTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCCCTGGCCTGCCCAGNGACACCAAGTTTTTGAGCTGTGGCTCGTCTGGAAGNCGGTCAACGAGTGTCGTGAACATGGGGACACGTACCAGGCTGCNTTGGCTGCAGGCTGCGGTTT-TGG-GCGAANTGNAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACACCAGCTGTGAAAAACATTCCTNTGTTCATGTNACGNNTGTTGCCATTTGCTCCAAACTGCGNCAACAANTAGTTTTTTCCAAACCNATTTATTNAT
gi|1 : CTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAATACTTGGGTTTCATTGCACAACTCAGATAGCTTGTACA-GACCATACTC----AG-CT-CAGAAACACCAAGTGTTTAACTCTCACTCGTCTGGAAGGCCGTAATCGTGTCTAGTGAATAT--GTGGAT--ACGTTCAGT-GCA-----TTGGGTGGGC----A-TCGATTTTGA-CGAAATGTA-GCGAAAAGTTGGCTTCTCTTCCCGGCCCGAATGCCACCCTTTGACAATTACTTGGATTTCATTGCACAACTCAGGTTACTTTA----ACAGACCC----T-----AC---TCAGTTC---AGAAACACCAAATTTTTAACTCTCACTC-----GT--------------------CTGGAAGGCCG---TCAACGAGTCTTGTGAACATGTGCACA-CGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGC-GATTTTGACGAAATGTAGCGAAA--AGTTG-GCTTCTCTTCCTGGCCCAAAAGCAACCTCTTGGAAAATATTTGGGTTTCATTTTACAAATCAGGT---AGCTTCTACATAC-CATACTCA-G-----CT----CAGAAACACCAAGTTTTCAACTCTTGCTTGTCTGGAAGGCCGTCAACGAGTTTTATGAACATATG--CACACGTTCA---GTACTTTGGCTGGGC-----AGCGATTTTTGCGAAATGTA-GCGAAAGAAAGCCGTCAACTAGTCTTGTGAACATGTGTACACGTTCAGTGCATTGGCTCGGCAACGATTTTGACGAGATGTAGCGAAAAGTTCGCTACTTTTCCTACCGCGAATACCACCCCTTGACAAAAATTTGGGTTTCATTGCACAACTCATGTAGATTCTACAGACCATACTCAGCTCAGAAACACCAAGTTTTTAATTCTTGCTTGTCTAGAAGTCCGGC-AACGAGTCTTGTGAACATGTG--CACAGGTTCAG--TGCTTTGGCTG--GGCAGGGATTTTGA-CGAAATGTAACGAAAAGTT-GGCTTCTCTTCCAGGCCCG--AATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAATTCATATAGCTTCTACAGACCATGCTCAGCTCAGAAACACTAAATTTTTAAACTCTCGCTTGTCTGGAAGGCCGTCAACGAGTTATATGAACATATGCACACGT-TCAG--TACTTTGGCTG--GGCAGCGATTT-T-G-GCGAAATGTAGCGAAAAGATGGCTTCTCTTCCCGGCACGAATGCCACCCCTTGGCAAATACTTGGATTTCATTGCACAAATCAGACAGCTTCTACCGACCATACTCAGCTCAGAAACACCAAGTTTTTAACTCTCGCTCGTCTGGAAGGCCGTCAACATCAGCTGTGAAAAACATTCCTGTGTTCATGTGACAAATGTTGCCATTTGCTCCAAACTGTGACAACAATTAG--TTTTCCAAACCAATTTATTAAT
gi|10 : TTGACGAAAT---GTGAAA--TGTTG-GCCTGTCTTCCCGGCCCAAATTTCACCCCTTGGAAAATACTTGGGTTCCATTGAACAACTCTGGTGATATTTTTTGGAGAT-CAT-TTCGAG-----CT----CAGAAACACCAAGTTTTTAACTCTCGCTCACCTAAAAGGCCGTCAACGAGTCTTGTGAAGATGTG--CAtaagataata
gi|11 : gaacGGTTTCAATGGACACGTCAGGTGTCTTCTACACCCCCTGGGCTGCCCAGTGACACCCAGTTTTTGAGC-GTGGCTCATCGAGAAGTCGGTCAACGAGTGTCGTGAACATGGGGACACACACCAGGCTNNNNNNNNNNCAGGCTGCAGTCTGTAG-GCTGTTTGGAGCGAA
gi|12 : tGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGAAAAGAT-GGCATCTCG-CCCG--CCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCTACACCCTCTGGCCTGCCCtcaggcgacacgaac
gi|12 : tacaaTTTGGAGCGAA-TCAG-GCGAAAAGATGGCATCTCG-CCCGCCGCCAATCTCCGCCGTCGGCTAATACTTGGGTTTCAATGGACACCTCAGGTATCTTCT----ACA----C--------------------------------CC-----------TCTGGCCT-----GC--------------------CCNNNNNNNNNNGTTCAACGAGTGTCGTGAACATGGGGACA-Cnnnnnnnnnngttcaacgagtgtcgtgaacatggggacacacacca
gi|13 : tacaagctgtaggctgTGGGTTTCAATGGACAACTCAGGTATCTTCTACTCACACTGGCCTGCCCAGGTACACCAAGTTTTTGAG-TGTGGCTCATTTGGAATTCGGTCAACGAGTGTCGGGAACATacacca
gi|14 : aaaatacttaattgcta-GATTTCGACGGAAGTTAGT-AAA--A--TG--CTTATTTTCCATGCCCAAATAACACCtatgataaatgcaaatcaatagtatatat
gi|15 : aactgtgccacatatgagacgccgtcaccatttttgtaagtctgcgctttctaaataatgtttgttatcgA-GCGTAACGTTGGCTTCTCTTGCCGGCCCGAATGCCACCCCTTGGCAAAT
gi|16 : caatgcattgactttgcaatcatgcgcgatacttgtaaaatcctctgtcgcgggACCAGCTGTGAAAAACATTTTTCTGTTCATGTTACGTTTGTTGCCATTTGCTTCAAACTGCGCCAACAAATAGTTTTTTCC-AACCTATTTATTCAT
gi|17 : tACTATGTTTTTAACTCTCACTCAATTAAAAGGCCAACAACGAGTTTTGTGAAGATGTG--CATAag
gi|2 : TAAACATAC-CACATCGTGAA---ATA----TAT-TGGCTGG-----CT-----------TGC-GATTGCGACGAAAGTTAAT-ACA--A--TG-GCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGT---ATCATGTA-A-A----TGATTT-GGAGGATG----CAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGATGTG--CTCACTTTCA---GTGTATTGGCGGGGCTGGGATGCGATTTAGATAAAAtagtgttagccaactac
gi|2 : attCTTTTCTTCCCGGTTCAAATGTCACCCTTTGGAAAACACTTGGGTTTCATTACACAACTCATGTATCATGTAAATGA------TTTGGAGG-ATGCAGAAACACCAGGTTTTTAACTCCTGCTCATTTAGAAGGCCGTCAACGTGTCTTGTGAAGAT--GTGCTC--ACTTTCAGT-GTA-----TTGGCGGGGCTGGGATGCGATTTAGA-TAAAA-------------ATAGGTTTTCTTCCCTGCCAACATGGCACCCCTTGAAAAATAATTGAGTTTCATAACACAACTCATGTATCATGT----ACA----TGGGTT-----GGAGTTC---TG---AGAAATACCAAGTTGTTAACTCTGGCTC-----TA--------------------TTAGAAGGCCA---CCAAAGAGTCTTGTGAAAATTTGTTTA-CTTTCA---GTG----CAT-TGACTGGACTGGGC-----------TGC-GATTTTAACGAAAGTTAGT-AAA--A--TG-GCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGT---ATCATGTACA------TGGGTT-GGAGGTCT----CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGATGTG--CTCACTTTCA---GTGCATTGGTTAGGC-----TGCGATTTCGACGAAA-GTAAGTAAAAataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggcttttcttcccgacccaaacgtcaccccttggaaaatacttgggtttcattacacatttcatgtatcatgtacatgggttggaggtctcataaacatcagacttttaactctggctcaattagaagactgcctacgagttttgtgaagatgtgctcactttcagtgcattggttaggctgcgatttcgacgaaagtaagtaaaatggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|2 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggCTTTTCTTCCCGACCCAAACGTCACCCCTTGGAAAATACTTGGGTTTCATTACACATTTCATGTATCATGTACATGG--GT-T---GGAGGTCT-CATAAACATCAGACTTTTAACTCTGGCTCAATTAGAAGACTGCCTACGAGTTTTGTGAAGAT--GTGCTC--ACTTTCAGT-GCA-----TTGGTTAGGC----T-GCGATTTCGA-CGAAA-GTA-A-GTAAA-ATGGCTTTTCTTCCCGGCCAAAATGTCACCCCTTGGATAATACTTGAGTTTCATTACACAACTCATGTATCtggcttttcttcccggccaaaatgtcaccccttggataatacttgagtttcattacacaactcatgtatcat
gi|3 : atttaaacataccacatcgtgaaatatattggctggcttgcgattgcgacgaaagttaatacaatggcttttcttcccggttcaaatgtcaccctttggaaaacacttgggtttcattacacaactcatgtatcatgtaaatgatttggaggatgcagaaacaccaggtttttaactcctgctcatttagaaggccgtcaacgtgtcttgtgaagatgtgctcactttcagtgtattggcggggctgggatgcgatttagataaaaataggttttcttccctgccaacatggcaccccttgaaaaataattgagtttcataacacaactcatgtatcatgtacatgggttggagttctgagaaataccaagttgttaactctggctctattagaaggccaccaaagagtcttgtgaaaatttgtttactttcagtgcattgactggactgggctgcgattttaacgaaagttagtaaaatggACACCCAGTTTTTGAGTCTGTCTTATCCAAATGTCGGTCAACGAGTGTCGGGAGCAT--TTGCACCCACATAAAGTTGCAAGTTGTTGGCT-------------ATTTGGA-CGGAATCAG-GCGACAC-ACGGCTTTCATTCCTGCCGCAAATGTCCCCCCTTTGCAAATATTTGGGTTTCAATGGACAACTCAGGTATCTTCTTCACACA----C----T-----GG---CC---TCCCCAGAGACTCCAGGTTTTGAA-TGTGGTTCATCTAGAAGTCGGTCAANNNNNNNNNNCTAGAAGTCGG---TCAACGAGTGTCGGGAACATGTGCACA-CACACAAACGTG----CATGTTGTTG--------------------AC-TATTTGGACCAAATCAGGCGAAAACA--CG-GCTTCCCTTTCCTCCGCAAA-GTCCCCCCTTGCAAAATACTTGGATTTCCATGG-CAACTCAGGT---ATCTTCTACACACACAGGA-CT-G-----TT----CAGAGACACCAAG-TTTTAAATGTGGCTCATCTAGGAGACGGTCAACGAGTGTCGTGAACATGTGAACATACACACAAAGGTGCATat
gi|4 : CTAGAAG-CCGGCGAACGGGTGTCGTGAACAAGGGGACACACAC-CAGGCTCCA--AGCTGTAGGCTG---TTTGGAGCG-AATCAGGCGACACGATCGGCCTCGCATCCCG--CCAACAATGTCCGCCGTATGCTAATACTTGGGTTTCAATGGACACCTCAGGTGTCTTCTACACCCTCTGGCCTGCCCAGTGACACCAAGTTTTTGAG-TGTGGTTCATCTAGAAGACGTTCATCAAGTGTCCTGAACATGGGGACACATACCAGGCTGCA--AGCTGTAGGCTG----TT-TGGAGCGAAgt
gi|5 : cGAACCACCAAGTTTTCAACTCTGACTCAATTAGAACGCCGCCAACGAGTCGTGTGAACAT--GTGCAC--ACATTCAGT-GCA-----TTGGCTGGAC----A-GCGATTTCGA-C-AAATGTA-GT---AATATGGC-TCGCTTCCCGGCCTGAATGTCACCCCTTGGAAAATACTTGGGTTTCAATAAACAACTCAGGTATTAAGT----ACAG---C----TTCAAGGG---TT---TC---AAA------AAGTTTTTAACTCTGGCTC-----AA--------------------TTAGAAGGCCG---CCAACGAGTTGTGTGAACAtcaggc
gi|6 : ---AAAAACACCAAGTTTTTGACTGTGCCTC-----AA--------------------TTAAAAA-CC-------------CTCAT--ACAATTGCAT--CTTTC-----TGACCCCAT-TTGTTGT-----GCTAATATCTATTATCAGATTTTAAAGAAAGTTGGT-AAA--A--TGTGCCTTTGT-CTGGGGCCAATTTTCACTGCTTGGAAAATGCTTCGGTGTGATTGAGCATCTCCTGT---GTCATGTA------TGTGGTCTGG-----CTTTCATAAAAACACCAAGATTTTGACTGTGCCTCTATTAGAAcag
gi|7 : TCTTCTACA-GACCGT-CTCCTG----CT-CAGAAACAC-AAGTTTTCTACTCTGTCTCTTCTAGAAGGTCGTCAACGAGTCTTGAGAACAT--GTGTAC--ACGTTCAGT-GCA-----TTGGCTGGGA----A-CCGATTTTGT-CCTAAT-TAGGCGAAAACATGGCTTCTCTTTCaatt
gi|8 : TTT----ACA----A----C-----G-----C---TC---AGAAACACCAAGTTTTTAACTCTGGCTC-----AA--------------------TTACAAGGCCA---TCGATGAGTCTTGTGAATATGTGCACA-TGTTCA---GTG----CAT-TGGCTGG-----GC-----------AGT-GATTTTGACGAAATGAAGT-AAA--A--TA-GCTTTTCTT-CCGGCCTAAATGTAACCCCTTGGAAAATACTTtctgagtagtaataatcgcaataaaccagtgattcattaaataaaccagtattcaatgactccttca
gi|9 : tgaacatgcT-CAGAGACACCAAGTTTTTGACTCTCGCTCATCTTGAAGGTCGTCAACGAGTCTTGTGAAGATATGTGCAC--ACGGTCAGT-ACA-----TTGGCTGGGC----A-GCGATTTGTA-CGAAATGTA-GTGAAAAGATGGCTTCCCTTCCCGGTCCAAATGCCACCCCTTGACAAATcaagagattatagaatccgccacttagata