lowQualScore : 22222222 1 1 9999999999999999999 4444444 1
lowQualScore : 22 2 4 99999999 22 6 2 2 2 1 2 2 666666 77 2 5 7 7777777777777777777 6 2222222 5 6
lowQualScore : .. . . ........ .. . . . . . . . ...... .. . . . ................... . ....... . .
lowQualScore : 88 0 0 44444444 88 0 0 0 0 9 1 1 111111 11 2 0 0 1111111111111111111 7 3333333 0 0
consensus : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACAGC--TGGGCTAGTTACACAATATTGTGTAACTAGCCC-------AGCTGTCTCTCCCAATAAAGATA
Reference ( gi|1 ) : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCGCTTTTCAAGGTCAA--AA-T-TT-C-AATTT-CAAGCACTAA-A-A------TAA-ATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTAACAGTATTGGGATAGTTACA--ATATTGTGTAACTAGCCC-------AGCTGTCTATCCCAATAAAGACA
gi|2 : CAGGGTTCATACAGATAAGGACTGATAAAAAATT-CAAGCACTTTTCAAGCACTTTTCAAGGTCAA--AT-T-TT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCTCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACA-------------------ATATTGTGTAACTAGCCC-------AGATGTCTCTCCCAATAAAG
gi|3 : CAGGGTTCATACAGATAAGGACGGATAAAA--TT-CAAGCAC-----------TTTTCAAGGTCAA--AA-T-TT-C-AATTT-CAAGCACTAA-A-A------TCA-ATGAACTTGCCATACATACCATACTGTACCTTAGGAGTTCCTGCACAGCTAGCCG-AGGGGCTAGTTACA-------------------ATATTGTGTAACTAGCCC-------AGCTGTCTCTCCCAATAAA
gi|11 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AATT-TT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCT
gi|10 : CAGGGTTCATACAGATAAGGACTGATGAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAGGTCGA--AA-T-TT-TTAATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTG
gi|17 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAAGTCAA--AA-T-TT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCATA
gi|15 : CAGAGTTCATACAGATAAGGACTGATAAAA--TTTCAAGCAATTTTCAAGCAATTTTCAAGGTAGA--AA-T-TTAT-AATTT-CAAGCACTAA-A-A------TAG-TTAAACTCGCCATACATACT-TACTGT
gi|14 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTT------------AAGGTCAA--AATT-TT-C-ATTTT-CAGGCACTAATATA------TAATATGAACTTACTATGCATACT-TACTGTACCTTA
gi|19 : CAGGGTTCATACAGATAAGGACTtgcctt
gi|21 : CGGGGTTCATACAGATAAGGACTGATAA--------AAGCACCTTTCAAGGAC---TCAAAATCAAGCAA-TACT-C-AAATC-CAtttcaaggtagaaattttcaatttcaagcactacaatagatgaacttgccatacatacttactgtacctt
gi|4 : AGGGTTCATACAAGTAAGGACTGATAAAA--TT-CAAGCAC-----------TTTTCAAGGTCAA--AA-T-TT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCACCATATTTACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGATAGTTACA-------------------ATATTGTGTAACTAGCCC-------AGCTGTCTCTCCCAATAA
gi|6 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCAC-----------TTTTCAAGGTCAA--AA-T-AT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCAAACATACT-GACTGTACCT--------------------TCCG-AGGGGCTAGTTAC---------------ACA--ATATTGTGTAACTAGCCC-------AGCTGTCTCTCCCAATAAAGA
gi|9 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGTACTTT-----------TCAAGGTCAA--AA-T-TT-C-CATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCATATATACT-TACTG-----TAGGAGTTCCTGCACAGATATCCG-AGGGGCGAGT
gi|8 : AGGGTTCATACAGATAAGAACTGACAAAA--TT-CAAGCATTTTTCAAG-----------GTCAA--AA-T-TTTC-AAATT-CAAGCACTAC-A-A------TAG-ATGAACTCGCCATACATACT-TACTATACTTTACGAGTTCCTGCACAGCTGTCCACAGGGGCTAGTTACAGTA
gi|13 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCTCCTTTCAAGGTCAA--AA-T-TT-C-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCAATATATACT-TACTGTATCTTAGG
gi|7 : AGTGTTCATACAGTTAAGAACTGATAAAA--TT-CAAGCACTTTT-----GT------AGGTAGA--AA-T-TTTC-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTTGCCATACA-----TACTGTACCTTAGGAGTTCCTGCACGGCGATCCA-CGGGGCCATTTACAATATT
gi|12 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCAC-----------TTTTCAAGGTCAA--AACT-TT-C-AATTT-CAAGCACTAA-A-ATACATGTAG-ATGAACTCTCCATACATTCT-TACTGTACCTTATGAGTTCattataccaggtgtttt
gi|16 : AGGATTCATACAGAT---GACCGGTAAAA--TT-CAGGCACTTTTC-----------AAGGTAGA--AA-T-TTTC-AATTT-CAAGCACTAA-A-A------TAG-ATTAACTTGCCATACATACT-TACTGTACCTTAGGAGTTC
gi|27 : GGGTTCATACAGATGAGGACTGATAAAA--TT-CAAGCACTTTTCAAG
gi|5 : GTTCATACAGATTAGGACCGATAAAA--TT-CAAGCAC-----------TTTTCGAGGTCAA--AA-T-TT-C-AATTT-CAAGCACTAA-A--------TAG-ATGAACGCGCCATATATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACA-------------------ATATTGTGTAACTAGCCC-------AGCTGTCTCTCCCAATAAAg
gi|28 : aaTGATGAAA--TT-CAAGTACTTTTCA
gi|18 : AA--TT-CAAGTACTTTCCAAGCCCTTTTCAAGGTAAA--AA-T-TTAT-AATTT-CAAGCACTAA-A-A------TAG-ATGAACTCGCCATACATACT-TACTGCACCTTAGGAGTTCtggcaaaatgccattttccaagc
gi|28 : gTTCAAGTACTTTTCATGG-CAA--AA-T-GC-C-ATTTTCCAAGC
gi|19 : tgatgaaaAAGGACTTTTCAAGGTAGA--AA-T-TTTC-AATTT-CAAGCACTAC-A-A------TAG-ATGAACTTGCCATACATACT-TACTGTACCTT
gi|24 : cagggttcatacagatTT-CAAGCACTAA-A-A------TAT-ATGAAATCTACATACATACT-TACTGTACCTTACAAGTTC
gi|3 : ACAGC--TGGGCTAGTTACACAATATTGT--AACTAGCCCCTCGGCTAGCTGT
gi|4 : cagggttcatacagataaggacggataaaattcaagcacttttcaaggtcaaaatttcaatttcaagcactaaaatcaatgaacttgccatacataccatactgtaccttaggagttcctgcACAGC--TGGGCTAGTTACACAATATTGT--AACTATCCCCTCGGATAGCTGTctctcccaataaa
gi|5 : agggttcatacaagtaaggactgataaaattcaagcacttttcaaggtcaaaatttcaatttcaagcactaaaatagatgaactcaccatatttacttactgtaccttaggagttcctgcACAGC--TGGGCTAGTTACACAATATTGT--AACTAGCCCCTCGGATAGCTGTctctcccaataa
gi|6 : aagttcatacagattaggaccgataaaattcaagcacttttcgaggtcaaaatttcaatttcaagcactaaatagatgaacgcgccatatatacttactgtaccttaggagttcctgcACAGC--TGGGCTAGTTACACAATATTGTGTAACTAGCCC-------ctctcccaataaa
gi|25 : agggttcatacagataaggactgataaaattcaagcacttttcaaggtcaaaatatcaatttcaagcactaaaatagatgaactcgccaaacatactgactgtaccttccgagACAGC--TGGGCTAGTTACACAATATTGT--AACTAGCCC-------ctctcccaataaaga
gi|2 : TGGGCTAGTTACACAATATTGT--AACTAGCCCCTCGGATAGCTGTctctcccaataaaga
gi|25 : cagggttcatacagataaggactgataaaaaattcaagcacttttcaagcacttttcaaggtcaaattttcaatttcaagcactaaaatagatgaactctccatacatacttactgtaccttaggagttcctgcGGGCTAGTTACA--ATATTGTGTAACTAGCCC-------AGCTGTCTCTCCCAATAAAGAgatgtctctcccaataaag
gi|26 : TGTAACTAGCCC-------AGCTGTCTCTCCTAATAAAGA
gi|20 : tatttatatatacatTGTAACTAGCCCCTGTGC-AGCTGTCTCTCCCAATAAAGATt
gi|29 : tatatatacaaaGTAACTAGCCC-------AGCTGTCTCTCCCAACAAAGacttaaacagatgtacagcaatgaatgtacagcatcaaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): CTCTCTCACAATAAAGATAATTTGAACATATGAACAGCATTGTATGTACAGCATCAAA
Unaligned ( gi|23 ): CTCTCGTTATAAAGATAACTTACACATATGAACAGCAACGTCTGTACTGCATCAAAA
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 1 2222222222222222222 111111
lowQualScore : 22 1 5555 1 22 7 1 1 1 555555 333 2 4 9999999999999999999 4 111111
lowQualScore : .. . .... . .. . . . . ...... ... . . ................... . ......
lowQualScore : 66 9 2222 4 66 6 9 4 8 888888 555 1 4 0000000000000000000 4 555555
consensus : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACA-------G-TAGTTA-ACA-ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
Reference ( family-3140 ) : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACAG--CTGGGCTAGTTACACA-ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
gi|1 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCGCTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AAATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTAACAGTATTGGGATAGTT--ACA-ATATTGTGTAACTAGCCC------AGCTGTCTATCCCAATAAAGACA
gi|10 : CAGGGTTCATACAGATAAGGACTGATGAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAGGTCGA--AATT-TT-TAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTG
gi|11 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AATT-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCT
gi|12 : AGGGTTCATACAGATAAGGACTGATAAAA--------------TTCAAGCACTTTTCAAGGTCAA--AACT-TT-CAATTT-CAAGCACTAAAATACATGT---AGATGAACTCTCCATACATTCT-TACTGTACCTTATGAGTTC
gi|13 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCTCCTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCAATATATACT-TACTGTATCTTAGG
gi|14 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTT------------AAGGTCAA--AATT-TT-CATTTT-CAGGCACTAATA------TATAATATGAACTTACTATGCATACT-TACTGTACCTTA
gi|15 : CAGAGTTCATACAGATAAGGACTGATAAAA--TTTCAAGCAATTTTCAAGCAATTTTCAAGGTAGA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGTTAAACTCGCCATACATACT-TACTGTtgcctt
gi|16 : AGGATTCATACAGAT---GACCGGTAAAA--TT-CAGGCACTTTTCAAG-----------GTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATTAACTTGCCATACATACT-TACTGTACCTTAGGAGTTC
gi|17 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAAGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATA
gi|18 : AA--TT-CAAGTACTTTCCAAGCCCTTTTCAAGGTAAA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGCACCTTAGGAGTTC
gi|19 : gCAGGGTTCATACAGATAAGGACT
gi|19 : AAGGACTTTTCAAGGTAGA--AA-T-TTTCAATTT-CAAGCACTACAA------T---AGATGAACTTGCCATACATACT-TACTGTACCTTtttcaaggtagaaattttcaatttcaagcactacaatagatgaacttgccatacatacttactgtacctt
gi|2 : cagggttcatacagatCAGGGTTCATACAGATAAGGACTGATAAAAAATT-CAAGCACTTTTCAAGCACTTTTCAAGGTCAA--AT-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCTCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT-------------------ACA-ATATTGTGTAACTAGCCC------AGATGTCTCTCCCAATAAAG
gi|20 : TATACA-A----ATGTAACTAGCCCCTGTGCAGCTGTCTCTCCCAATAAAGATA
gi|21 : tataCGGGGTTCATACAGATAAGGACTGATAA--------AAGCACCTTTCAAGGAC---TCAAAATCAAGCAA-TACT-CAAATC-CAacttaaacagatgtacagcaatgaatgtacagcatcaaaa
gi|24 : TT-CAAGCACTAAAA------T---ATATGAAATCTACATACATACT-TACTGTACCTTACAAGTTC
gi|25 : GGGCTAGTTACA---ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|26 : TATTTATATATACATTGT--AACTAGCCC------AGCTGTCTCTCCTAATAAAGAT
gi|27 : GGGTTCATACAGATGAGGACTGATAAAA--TT-CAAGCACTTTTCAAG
gi|28 : TGATGAAA--TT-CAAGTACTTTTCAg
gi|28 : TTCAAGTACTTTTCATGG-CAA--AA-T-GC-CATTTTCCAAGCtggcaaaatgccattttccaagc
gi|29 : tgatgaaaGTAACTAGCCC------AGCTGTCTCTCCCAACAAAG
gi|3 : aCAGGGTTCATACAGATAAGGACGGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---CAATGAACTTGCCATACATACCATACTGTACCTTAGGAGTTCCTGCACAGCTAGCCG-AGGGGCTAGTT-------------------ACA-ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|4 : AGGGTTCATACAAGTAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCACCATATTTACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGATAGTT-------------------ACA-ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAA
gi|5 : GTTCATACAGATTAGGACCGATAAAA--TT-CAAGCACTTTTCGAG-----------GTCAA--AA-T-TT-CAATTT-CAAGCACTAAA-------T---AGATGAACGCGCCATATATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT-------------------ACA-ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|6 : aaAGGGTTCATACAGATAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-AT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCAAACATACT-GACTGTACCT--------------------TCCG-AGGG-----------------GCTAGTTACACA-ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|7 : AGTGTTCATACAGTTAAGAACTGATAAAA--TT-CAAGCACTTTT---GTA--------GGTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATGAACTTGCCATACA-----TACTGTACCTTAGGAGTTCCTGCACGGCGATCCA-CGGGGCCATTTACA
gi|8 : AGGGTTCATACAGATAAGAACTGACAAAA--TT-CAAGCATTTTTCAAG-----------GTCAA--AA-T-TTTCAAATT-CAAGCACTACAA------T---AGATGAACTCGCCATACATACT-TACTATACTTTACGAGTTCCTGCACAGCTGTCCACAGGGGCTAGTTACAG--atattattataccaggtgtttt
gi|9 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGTACTT-----------TTCAAGGTCAA--AA-T-TT-CCATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATATATACT-TACTG-----TAGGAGTTCCTGCACAGATATCCG-AGGGGCGAGTta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTCTCTCACAATAAAGATAATTTGAACATATGAACAGCATTGTATGTACAGCATCAAA
Unaligned ( gi|23 ): CTCTCGTTATAAAGATAACTTACACATATGAACAGCAACGTCTGTACTGCATCAAAA
Alignments
lowQualScore : 1 999999999999999999 111111
lowQualScore : 22 1 5555 1 22 7 1 1 1 555555 333 2 4 555555555555555555 111111
lowQualScore : .. . .... . .. . . . . ...... ... . . .................. ......
lowQualScore : 66 9 2222 4 66 6 9 4 8 888888 555 1 4 555555555555555555 555555
consensus : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACA---------TA-TT-ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
Reference ( family-3140 ) : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTACAG--------TAGTTAACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
gi|1 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCGCTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AAATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTAACAGTATTGGGATAGTT-ACAATATTGTGTAACTAGCCC------AGCTGTCTATCCCAATAAAGACA
gi|10 : CAGGGTTCATACAGATAAGGACTGATGAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAGGTCGA--AATT-TT-TAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTG
gi|11 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AATT-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCT
gi|12 : AGGGTTCATACAGATAAGGACTGATAAAA--------------TTCAAGCACTTTTCAAGGTCAA--AACT-TT-CAATTT-CAAGCACTAAAATACATGT---AGATGAACTCTCCATACATTCT-TACTGTACCTTATGAGTTC
gi|13 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCTCCTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCAATATATACT-TACTGTATCTTAGG
gi|14 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTT------------AAGGTCAA--AATT-TT-CATTTT-CAGGCACTAATA------TATAATATGAACTTACTATGCATACT-TACTGTACCTTA
gi|15 : CAGAGTTCATACAGATAAGGACTGATAAAA--TTTCAAGCAATTTTCAAGCAATTTTCAAGGTAGA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGTTAAACTCGCCATACATACT-TACTGTtgcctt
gi|16 : AGGATTCATACAGAT---GACCGGTAAAA--TT-CAGGCACTTTTCAAG-----------GTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATTAACTTGCCATACATACT-TACTGTACCTTAGGAGTTC
gi|17 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAAGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATA
gi|18 : AA--TT-CAAGTACTTTCCAAGCCCTTTTCAAGGTAAA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGCACCTTAGGAGTTC
gi|19 : gCAGGGTTCATACAGATAAGGACT
gi|19 : AAGGACTTTTCAAGGTAGA--AA-T-TTTCAATTT-CAAGCACTACAA------T---AGATGAACTTGCCATACATACT-TACTGTACCTTtttcaaggtagaaattttcaatttcaagcactacaatagatgaacttgccatacatacttactgtacctt
gi|2 : cagggttcatacagatCAGGGTTCATACAGATAAGGACTGATAAAAAATT-CAAGCACTTTTCAAGCACTTTTCAAGGTCAA--AT-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCTCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT------------------ACAATATTGTGTAACTAGCCC------AGATGTCTCTCCCAATAAAG
gi|20 : TGTAACTAGCCCCTGTGCAGCTGTCTCTCCCAATAAAGATA
gi|21 : tatatatacaaaCGGGGTTCATACAGATAAGGACTGATAA--------AAGCACCTTTCAAGGAC---TCAAAATCAAGCAA-TACT-CAAATC-CAacttaaacagatgtacagcaatgaatgtacagcatcaaaa
gi|24 : TT-CAAGCACTAAAA------T---ATATGAAATCTACATACATACT-TACTGTACCTTACAAGTTC
gi|25 : --------TAGTTA-CAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|26 : gggcTGTAACTAGCCC------AGCTGTCTCTCCTAATAAAGAT
gi|27 : tatttatatatacatGGGTTCATACAGATGAGGACTGATAAAA--TT-CAAGCACTTTTCAAG
gi|28 : TGATGAAA--TT-CAAGTACTTTTCAg
gi|28 : TTCAAGTACTTTTCATGG-CAA--AA-T-GC-CATTTTCCAAGCtggcaaaatgccattttccaagc
gi|29 : tgatgaaaGTAACTAGCCC------AGCTGTCTCTCCCAACAAAG
gi|3 : aCAGGGTTCATACAGATAAGGACGGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---CAATGAACTTGCCATACATACCATACTGTACCTTAGGAGTTCCTGCACAGCTAGCCG-AGGGGCTAGTT------------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|4 : AGGGTTCATACAAGTAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCACCATATTTACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGATAGTT------------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAA
gi|5 : GTTCATACAGATTAGGACCGATAAAA--TT-CAAGCACTTTTCGAG-----------GTCAA--AA-T-TT-CAATTT-CAAGCACTAAA-------T---AGATGAACGCGCCATATATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT------------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|6 : aaAGGGTTCATACAGATAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-AT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCAAACATACT-GACTGTACCT--------------------TCCG-AGGGGCTAGTTAC----------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|7 : AGTGTTCATACAGTTAAGAACTGATAAAA--TT-CAAGCACTTTT---GTA--------GGTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATGAACTTGCCATACA-----TACTGTACCTTAGGAGTTCCTGCACGGCGATCCA-CGGGGCCATTTACAA--------TA-TTA
gi|8 : AGGGTTCATACAGATAAGAACTGACAAAA--TT-CAAGCATTTTTCAAG-----------GTCAA--AA-T-TTTCAAATT-CAAGCACTACAA------T---AGATGAACTCGCCATACATACT-TACTATACTTTACGAGTTCCTGCACAGCTGTCCACAGGGGCTAGTTACAG--------TAttataccaggtgtttt
gi|9 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGTACTT-----------TTCAAGGTCAA--AA-T-TT-CCATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATATATACT-TACTG-----TAGGAGTTCCTGCACAGATATCCG-AGGGGCGAGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTCTCTCACAATAAAGATAATTTGAACATATGAACAGCATTGTATGTACAGCATCAAA
Unaligned ( gi|23 ): CTCTCGTTATAAAGATAACTTACACATATGAACAGCAACGTCTGTACTGCATCAAAA
Alignments
lowQualScore : 1 55555555555555555555 111111
lowQualScore : 22 1 5555 1 22 7 1 1 1 555555 333 2 4 66666666666666666666 111111
lowQualScore : .. . .... . .. . . . . ...... ... . . .................... ......
lowQualScore : 66 9 2222 4 66 6 9 4 8 888888 555 1 4 77777777777777777777 555555
consensus : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTAC-A-TA---------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
Reference ( family-3140 ) : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTAC-A-TA---------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
gi|1 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCGCTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AAATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTAAC-AGTATTGGGATAGTTACAATATTGTGTAACTAGCCC------AGCTGTCTATCCCAATAAAGACA
gi|10 : CAGGGTTCATACAGATAAGGACTGATGAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAGGTCGA--AATT-TT-TAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTG
gi|11 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AATT-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCT
gi|12 : AGGGTTCATACAGATAAGGACTGATAAAA--------------TTCAAGCACTTTTCAAGGTCAA--AACT-TT-CAATTT-CAAGCACTAAAATACATGT---AGATGAACTCTCCATACATTCT-TACTGTACCTTATGAGTTC
gi|13 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCTCCTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCAATATATACT-TACTGTATCTTAGG
gi|14 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTT------------AAGGTCAA--AATT-TT-CATTTT-CAGGCACTAATA------TATAATATGAACTTACTATGCATACT-TACTGTACCTTA
gi|15 : CAGAGTTCATACAGATAAGGACTGATAAAA--TTTCAAGCAATTTTCAAGCAATTTTCAAGGTAGA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGTTAAACTCGCCATACATACT-TACTGTtgcctt
gi|16 : AGGATTCATACAGAT---GACCGGTAAAA--TT-CAGGCACTTTTCAAG-----------GTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATTAACTTGCCATACATACT-TACTGTACCTTAGGAGTTC
gi|17 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAAGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATA
gi|18 : AA--TT-CAAGTACTTTCCAAGCCCTTTTCAAGGTAAA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGCACCTTAGGAGTTC
gi|19 : gCAGGGTTCATACAGATAAGGACT
gi|19 : AAGGACTTTTCAAGGTAGA--AA-T-TTTCAATTT-CAAGCACTACAA------T---AGATGAACTTGCCATACATACT-TACTGTACCTTtttcaaggtagaaattttcaatttcaagcactacaatagatgaacttgccatacatacttactgtacctt
gi|2 : cagggttcatacagatCAGGGTTCATACAGATAAGGACTGATAAAAAATT-CAAGCACTTTTCAAGCACTTTTCAAGGTCAA--AT-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCTCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAG------------------TTACAATATTGTGTAACTAGCCC------AGATGTCTCTCCCAATAAAG
gi|20 : TAT-A-TA---------T-ACAA----ATGTAACTAGCCCCTGTGCAGCTGTCTCTCCCAATAAAGATA
gi|21 : CGGGGTTCATACAGATAAGGACTGATAA--------AAGCACCTTTCAAGGAC---TCAAAATCAAGCAA-TACT-CAAATC-CAacttaaacagatgtacagcaatgaatgtacagcatcaaaa
gi|24 : TT-CAAGCACTAAAA------T---ATATGAAATCTACATACATACT-TACTGTACCTTACAAGTTC
gi|25 : GGGCTAGTTAC------------------AATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|26 : TATTTAT-A-TA---------T----ACATTGT--AACTAGCCC------AGCTGTCTCTCCTAATAAAGAT
gi|27 : GGGTTCATACAGATGAGGACTGATAAAA--TT-CAAGCACTTTTCAAG
gi|28 : TGATGAAA--TT-CAAGTACTTTTCAg
gi|28 : TTCAAGTACTTTTCATGG-CAA--AA-T-GC-CATTTTCCAAGCtggcaaaatgccattttccaagc
gi|29 : tgatgaaaGTAACTAGCCC------AGCTGTCTCTCCCAACAAAG
gi|3 : aCAGGGTTCATACAGATAAGGACGGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---CAATGAACTTGCCATACATACCATACTGTACCTTAGGAGTTCCTGCACAGCTAGCCG-AGGGGCTAG------------------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|4 : AGGGTTCATACAAGTAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCACCATATTTACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGATAG------------------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAA
gi|5 : GTTCATACAGATTAGGACCGATAAAA--TT-CAAGCACTTTTCGAG-----------GTCAA--AA-T-TT-CAATTT-CAAGCACTAAA-------T---AGATGAACGCGCCATATATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAG------------------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|6 : aaAGGGTTCATACAGATAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-AT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCAAACATACT-GACTGTACCT--------------------TCCG-AGGGGCTAGTTAC----------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|7 : AGTGTTCATACAGTTAAGAACTGATAAAA--TT-CAAGCACTTTT---GTA--------GGTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATGAACTTGCCATACA-----TACTGTACCTTAGGAGTTCCTGCACGGCGATCCA-CGGGGCCATTTACAA-TA---------TTATTATA
gi|8 : AGGGTTCATACAGATAAGAACTGACAAAA--TT-CAAGCATTTTTCAAG-----------GTCAA--AA-T-TTTCAAATT-CAAGCACTACAA------T---AGATGAACTCGCCATACATACT-TACTATACTTTACGAGTTCCTGCACAGCTGTCCACAGGGGCTAGTTAC-A-ccaggtgtttt
gi|9 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGTACTT-----------TTCAAGGTCAA--AA-T-TT-CCATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATATATACT-TACTG-----TAGGAGTTCCTGCACAGATATCCG-AGGGGCGAGTgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTCTCTCACAATAAAGATAATTTGAACATATGAACAGCATTGTATGTACAGCATCAAA
Unaligned ( gi|23 ): CTCTCGTTATAAAGATAACTTACACATATGAACAGCAACGTCTGTACTGCATCAAAA
Alignments
lowQualScore : 1 55555555555555555555 111111
lowQualScore : 22 1 5555 1 22 7 1 1 1 555555 333 2 4 66666666666666666666 111111
lowQualScore : .. . .... . .. . . . . ...... ... . . .................... ......
lowQualScore : 66 9 2222 4 66 6 9 4 8 888888 555 1 4 77777777777777777777 555555
consensus : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTAC-A-TA---------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
Reference ( family-3140 ) : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTAC-A-TA---------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
gi|1 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCGCTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AAATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTAAC-AGTATTGGGATAGTTACAATATTGTGTAACTAGCCC------AGCTGTCTATCCCAATAAAGACA
gi|10 : CAGGGTTCATACAGATAAGGACTGATGAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAGGTCGA--AATT-TT-TAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTG
gi|11 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AATT-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCT
gi|12 : AGGGTTCATACAGATAAGGACTGATAAAA--------------TTCAAGCACTTTTCAAGGTCAA--AACT-TT-CAATTT-CAAGCACTAAAATACATGT---AGATGAACTCTCCATACATTCT-TACTGTACCTTATGAGTTC
gi|13 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCTCCTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCAATATATACT-TACTGTATCTTAGG
gi|14 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTT------------AAGGTCAA--AATT-TT-CATTTT-CAGGCACTAATA------TATAATATGAACTTACTATGCATACT-TACTGTACCTTA
gi|15 : CAGAGTTCATACAGATAAGGACTGATAAAA--TTTCAAGCAATTTTCAAGCAATTTTCAAGGTAGA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGTTAAACTCGCCATACATACT-TACTGTtgcctt
gi|16 : AGGATTCATACAGAT---GACCGGTAAAA--TT-CAGGCACTTTTCAAG-----------GTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATTAACTTGCCATACATACT-TACTGTACCTTAGGAGTTC
gi|17 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAAGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATA
gi|18 : AA--TT-CAAGTACTTTCCAAGCCCTTTTCAAGGTAAA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGCACCTTAGGAGTTC
gi|19 : gCAGGGTTCATACAGATAAGGACT
gi|19 : AAGGACTTTTCAAGGTAGA--AA-T-TTTCAATTT-CAAGCACTACAA------T---AGATGAACTTGCCATACATACT-TACTGTACCTTtttcaaggtagaaattttcaatttcaagcactacaatagatgaacttgccatacatacttactgtacctt
gi|2 : cagggttcatacagatCAGGGTTCATACAGATAAGGACTGATAAAAAATT-CAAGCACTTTTCAAGCACTTTTCAAGGTCAA--AT-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCTCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAG------------------TTACAATATTGTGTAACTAGCCC------AGATGTCTCTCCCAATAAAG
gi|20 : TAT-A-TA---------T-ACAA----ATGTAACTAGCCCCTGTGCAGCTGTCTCTCCCAATAAAGATA
gi|21 : CGGGGTTCATACAGATAAGGACTGATAA--------AAGCACCTTTCAAGGAC---TCAAAATCAAGCAA-TACT-CAAATC-CAacttaaacagatgtacagcaatgaatgtacagcatcaaaa
gi|24 : TT-CAAGCACTAAAA------T---ATATGAAATCTACATACATACT-TACTGTACCTTACAAGTTC
gi|25 : GGGCTAGTTAC------------------AATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|26 : TATTTAT-A-TA---------T----ACATTGT--AACTAGCCC------AGCTGTCTCTCCTAATAAAGAT
gi|27 : GGGTTCATACAGATGAGGACTGATAAAA--TT-CAAGCACTTTTCAAG
gi|28 : TGATGAAA--TT-CAAGTACTTTTCAg
gi|28 : TTCAAGTACTTTTCATGG-CAA--AA-T-GC-CATTTTCCAAGCtggcaaaatgccattttccaagc
gi|29 : tgatgaaaGTAACTAGCCC------AGCTGTCTCTCCCAACAAAG
gi|3 : aCAGGGTTCATACAGATAAGGACGGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---CAATGAACTTGCCATACATACCATACTGTACCTTAGGAGTTCCTGCACAGCTAGCCG-AGGGGCTAG------------------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|4 : AGGGTTCATACAAGTAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCACCATATTTACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGATAG------------------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAA
gi|5 : GTTCATACAGATTAGGACCGATAAAA--TT-CAAGCACTTTTCGAG-----------GTCAA--AA-T-TT-CAATTT-CAAGCACTAAA-------T---AGATGAACGCGCCATATATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAG------------------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|6 : aaAGGGTTCATACAGATAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-AT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCAAACATACT-GACTGTACCT--------------------TCCG-AGGGGCTAGTTAC----------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|7 : AGTGTTCATACAGTTAAGAACTGATAAAA--TT-CAAGCACTTTT---GTA--------GGTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATGAACTTGCCATACA-----TACTGTACCTTAGGAGTTCCTGCACGGCGATCCA-CGGGGCCATTTACAA-TA---------TTATTATA
gi|8 : AGGGTTCATACAGATAAGAACTGACAAAA--TT-CAAGCATTTTTCAAG-----------GTCAA--AA-T-TTTCAAATT-CAAGCACTACAA------T---AGATGAACTCGCCATACATACT-TACTATACTTTACGAGTTCCTGCACAGCTGTCCACAGGGGCTAGTTAC-A-ccaggtgtttt
gi|9 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGTACTT-----------TTCAAGGTCAA--AA-T-TT-CCATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATATATACT-TACTG-----TAGGAGTTCCTGCACAGATATCCG-AGGGGCGAGTgta
blockSeqs : AA T CATT G GC T A A C TACATG ATA A C TTACAATATT CTGTGC
blockSeqs : . . CACT G . T . T . . . . . TTATATAT .
blockSeqs : . . CACT A . C . A . . . . . TTAC .
blockSeqs : . . CTCC A . T . T . . . . . TTAC .
blockSeqs : . . CAAT A . . . T . . . . . TT .
blockSeqs : . . CATT G . . . T . . . . . TT .
blockSeqs : . . CCCT G . . . . . . . . . TT .
blockSeqs : . . GACT A . . . . . . . . . TT .
blockSeqs : . . CACT A . . . . . . . . .
blockSeqs : . . TACT G . . . . . . . .
blockSeqs : . . CACT A . . . . . . . .
blockSeqs : . . CACT A . . . . . . . .
blockSeqs : . . CACT A . . . . . . . .
blockSeqs : . . GAC A . . . . . . . .
blockSeqs : . . TA A . . . . . . . .
blockSeqs : . . . A . . . . . . . .
blockSeqs : . . . A . . . . . . . .
blockSeqs : . . . G . . . . . . . .
blockSeqs : . . . A . . . . . . .
blockSeqs : . . . A . . . . .
blockSeqs : .
blockSeqCons : TT******************
originalCons : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTTAC-A-TA---------TTACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
finalCons : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT------------------ACAATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTCTCTCACAATAAAGATAATTTGAACATATGAACAGCATTGTATGTACAGCATCAAA
Unaligned ( gi|23 ): CTCTCGTTATAAAGATAACTTACACATATGAACAGCAACGTCTGTACTGCATCAAAA
Alignments
lowQualScore : 11111 1 22222222222222222 111111
lowQualScore : 22 1 11111 1 22 7 1 1 1 555555 333 2 4 55 88888888888888888 000000
lowQualScore : .. . ..... . .. . . . . ...... ... . . .. ................. ......
lowQualScore : 66 9 22222 4 66 6 9 4 8 888888 555 1 0 55 00000000000000000 555555
consensus : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
Reference ( family-3140 ) : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGATA
gi|1 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCGCTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AAATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTA--ACAGTATTGGGATAGTTACAATATTGTGTAACTAGCCC------AGCTGTCTATCCCAATAAAGACA
gi|10 : CAGGGTTCATACAGATAAGGACTGATGAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAGGTCGA--AATT-TT-TAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCTG
gi|11 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCACTTTTCAAGGTCGA--AATT-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGTACCTTAGGAGTTCCT
gi|12 : AGGGTTCATACAGATAAGGACTGATAAAA--------------TTCAAGCACTTTTCAAGGTCAA--AACT-TT-CAATTT-CAAGCACTAAAATACATGT---AGATGAACTCTCCATACATTCT-TACTGTACCTTATGAGTTC
gi|13 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCTCCTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCAATATATACT-TACTGTATCTTAGG
gi|14 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTT------------AAGGTCAA--AATT-TT-CATTTT-CAGGCACTAATA------TATAATATGAACTTACTATGCATACT-TACTGTACCTTA
gi|15 : CAGAGTTCATACAGATAAGGACTGATAAAA--TTTCAAGCAATTTTCAAGCAATTTTCAAGGTAGA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGTTAAACTCGCCATACATACT-TACTGTtgcctt
gi|16 : AGGATTCATACAGAT---GACCGGTAAAA--TT-CAGGCACTTTTCAAG-----------GTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATTAACTTGCCATACATACT-TACTGTACCTTAGGAGTTC
gi|17 : CAGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGCACTTTTCAAGCATTTTTCAAAGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATA
gi|18 : AA--TT-CAAGTACTTTCCAAGCCCTTTTCAAGGTAAA--AA-T-TTATAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATACATACT-TACTGCACCTTAGGAGTTC
gi|19 : gCAGGGTTCATACAGATAAGGACT
gi|19 : AAGGACTTTTCAAGGTAGA--AA-T-TTTCAATTT-CAAGCACTACAA------T---AGATGAACTTGCCATACATACT-TACTGTACCTTtttcaaggtagaaattttcaatttcaagcactacaatagatgaacttgccatacatacttactgtacctt
gi|2 : cagggttcatacagatCAGGGTTCATACAGATAAGGACTGATAAAAAATT-CAAGCACTTTTCAAGCACTTTTCAAGGTCAA--AT-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCTCCATACATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGATGTCTCTCCCAATAAAG
gi|20 : ACAGCTGCAC--AGGGGCTAGTT--AC------------------AT-TTGTATA
gi|20 : tataTGTAACTAGCCCCTGTGCAGCTGTCTCTCCCAATAAAGATActctcccaataaagataacttaaacagatgtacagcaatgaatgtacagcatcaaaa
gi|21 : tatatatacaaaCGGGGTTCATACAGATAAGGACTGATAA--------AAGCACCTTTCAAGGAC---TCAAAATCAAGCAA-TACT-CAAATC-CAacttaaacagatgtacagcaatgaatgtacagcatcaaaa
gi|24 : TT-CAAGCACTAAAA------T---ATATGAAATCTACATACATACT-TACTGTACCTTACAAGTTC
gi|25 : GGGCTAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|26 : TGTAACTAGCCC------AGCTGTCTCTCCTAATAAAGAT
gi|27 : tatttatatatacatGGGTTCATACAGATGAGGACTGATAAAA--TT-CAAGCACTTTTCAAG
gi|28 : TGATGAAA--TT-CAAGTACTTTTCAg
gi|28 : TTCAAGTACTTTTCATGG-CAA--AA-T-GC-CATTTTCCAAGCtggcaaaatgccattttccaagc
gi|29 : tgatgaaaGTAACTAGCCC------AGCTGTCTCTCCCAACAAAG
gi|3 : aCAGGGTTCATACAGATAAGGACGGATAAAA--TT-CAAGCACTTTTCAAG-----------GTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---CAATGAACTTGCCATACATACCATACTGTACCTTAGGAGTTCCTGCACAGCTAGCCG-AGGGGCTAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|4 : AGGGTTCATACAAGTAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-TT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCACCATATTTACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGATAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAA
gi|5 : GTTCATACAGATTAGGACCGATAAAA--TT-CAAGCACTTTTCGAG-----------GTCAA--AA-T-TT-CAATTT-CAAGCACTAAA-------T---AGATGAACGCGCCATATATACT-TACTGTACCTTAGGAGTTCCTGCACAGCTATCCG-AGGGGCTAGTT--ACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAA
gi|6 : aaAGGGTTCATACAGATAAGGACTGATAAAA--TT-CA-----------AGCACTTTTCAAGGTCAA--AA-T-AT-CAATTT-CAAGCACTAAAA------T---AGATGAACTCGCCAAACATACT-GACTGTACCT--------------------TCCG-AGGGGCTAGTTACACA-----------------ATATTGTGTAACTAGCCC------AGCTGTCTCTCCCAATAAAGA
gi|7 : AGTGTTCATACAGTTAAGAACTGATAAAA--TT-CAAGCACTTTT---GTA--------GGTAGA--AA-T-TTTCAATTT-CAAGCACTAAAA------T---AGATGAACTTGCCATACATACT-----GTACCTTAGGAGTTCCTGCACGGCGATCCA-CGGGGCCATTT--ACA-----------------ATATTAT-TA--TA--CC------AGGTGTTT
gi|8 : AGGGTTCATACAGATAAGAACTGACAAAA--TT-CAAGCATTTTTCAAG-----------GTCAA--AA-T-TTTCAAATT-CAAGCACTACAA------T---AGATGAACTCGCCATACATACT-TACTATACTTTACGAGTTCCTGCACAGCTGTCCACAGGGGCTAGTT--ACA-----------------GTAt
gi|9 : AGGGTTCATACAGATAAGGACTGATAAAA--TT-CAAGTACTT-----------TTCAAGGTCAA--AA-T-TT-CCATTT-CAAGCACTAAAA------T---AGATGAACTCGCCATATATACT-TACTG-----TAGGAGTTCCTGCACAGATATCCG-AGGGGCGAGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTCTCTCACAATAAAGATAATTTGAACATATGAACAGCATTGTATGTACAGCATCAAA
Unaligned ( gi|23 ): CTCTCGTTATAAAGATAACTTACACATATGAACAGCAACGTCTGTACTGCATCAAAA