lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111 111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 22 333 55555555555555 1 11 1 11 1 22222222222 22 8888888888888888888888888888888888888888888888888888 3333 3333 11 1 11 1 1 44444 4444444 4444 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 2 55 1 11 333333 9999999999999999999999999999999999999999999999999 11 1 1 11 11 1 555555555555 11 333 33 2 4 111111111111111111111111111111111111111 4444 22 222222 1 4444444444 222222 22 999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 55555555555555555 222222 11 1 222222222 444444444 1 1 888888888888888 11 1 1 666666666 11 1 1 444444 3333333333 222 2222 11 1 2 4444 1 2222 8888888888 111 1 333 444444444 55555555555555 3333333 1 2 1 11 1 11 333333 22222222222 222222 555555 11 999999999999999999999 000000000 2 6666666
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 44 333 7 88888888888888 3 11 0 88 2 00000000000 4 6 22 0000000000000000000000000000000000000000000000000000 0000 1111 0 1 00 7 1 6 66 7 5 22222 3 0 3333333 1 4444 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 3 7 3 0 6 55 4 5 66 888888 2 7 6 0000000000000000000000000000000000000000000000000 444 88 5 44 3 44 88 7 2 6 444444444444 99 4 3 4 333 88 0 2 3 0 2 4 2 4 2 000000000000000000000000000000000000000 1111 2 4 11 888888 3 0 0000000000 2 000000 3 77 222222222222222222222222222222222222222222222222222222222222222222222222222 0 4 3 0 88 0 1 7 3 7 22222222222222222 1 1 0 2 8 6 4 111111 00 7 3 0 2 2 55 000000000 2 000000000 6 3 2 0 0 0 0 444444444444444 77 3 2 4 0 3 2 1 111111111 3 8 0 6 0 9999 99 6 4 88 6 2 4 4 4 6 3 6 0 7 111111 5555555555 111 4444 88 4 3 5 3 2 2 66 2 6 2 0 55 4 6 5555 4 5 4444 0000000000 2 2 4 777 4 2 2 4 2 5 2 555 88 555555555 66 2 11111111111111 55 5555555 3 2 2 5 6 4 4 0 5 6 88 3 33 2 888888 3 2 66 2 44444444444 0 3 111111 2 000000 2 88 6 2 33 2 2 2 666666666666666666666 6 9 8 666666666 8 3 0 11 7777777
lowQualScore : ....................................................................................... .. .. ... . .............. . .. . .. . ........... . . .. .................................................... .... .... . . .. . . . .. . . ..... . . ....... . .... .................................................................................. .. . . . . . .. . . .. ...... . . . ................................................. ... .. . .. . .. .. . . . ............ .. . . . ... .. . . . . . . . . . ....................................... .... . . .. ...... . . .......... . ...... . .. ........................................................................... . . . . .. . . . . . ................. . . . . . . . ...... .. . . . . . .. ......... . ......... . . . . . . . ............... .. . . . . . . . ......... . . . . . .... .. . . .. . . . . . . . . . . ...... .......... ... .... .. . . . . . . .. . . . . .. . . .... . . .... .......... . . . ... . . . . . . . ... .. ......... .. . .............. .. ....... . . . . . . . . . . .. . .. . ...... . . .. . ........... . . ...... . ...... . .. . . .. . . . ..................... . . . ......... . . . .. .......
lowQualScore : 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 00 333 3 77777777777777 3 66 0 22 8 77777777777 0 7 77 3333333333333333333333333333333333333333333333333333 7777 7777 7 0 33 0 0 7 00 3 0 00000 7 7 3333333 0 3333 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 55 0 5 0 7 0 00 0 0 55 555555 5 3 0 3333333333333333333333333333333333333333333333333 000 77 0 77 3 33 33 0 5 0 555555555555 55 0 0 0 555 00 0 5 0 0 5 0 5 0 5 000000000000000000000000000000000000000 5555 5 0 55 555555 0 5 5555555555 5 555555 0 55 555555555555555555555555555555555555555555555555555555555555555555555555555 5 7 7 7 33 7 0 3 7 0 00000000000000000 0 0 2 5 2 7 7 333333 22 0 2 2 5 5 00 000000000 5 000000000 5 0 5 2 0 0 7 000000000000000 55 0 5 0 7 3 0 0 000000000 7 3 7 7 7 0000 33 7 0 55 0 5 0 0 0 0 0 0 5 0 555555 5555555555 000 0000 55 0 0 5 0 5 5 55 5 0 5 0 55 0 0 5555 0 0 0000 0000000000 5 5 0 555 0 5 5 0 5 5 5 000 00 000000000 55 5 00000000000000 00 0000000 0 5 5 0 0 0 0 0 0 0 33 3 33 5 888888 0 5 55 5 88888888888 2 2 222222 5 000000 5 88 0 5 88 0 0 5 777777777777777777777 7 0 3 777777777 3 7 7 77 7777777
consensus : TATTACCGGTGATTTCCGAAAATTCCGA----ATTTA--------TAACGCTCGCGCATTAA--TGTACTCGGCCAC-TCCGTCGGTA--TTC------GTTT--ACATT-GTCACG---CTATCTGTCATCCAGAAAAAA--C-T--AACTACAATGTCA-TTTTTACGGGTA-GGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAANTATATTATTA-ATTTATATA--------AA-TATGAA-TTTATATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTNTCAATGTGACANGGATCGTCTGCTACTGCAAGTGC-CGTGACGTAGTATT-AATTT-TT--CCGGGAACCGAAGTCACGTTATTTTCTTATAT-------GGACAAAGGAATGTACTCGATGAAACTTCT--TGTTTTTTTGGATGGGTAATTTTTTTTNATTNTGATAAAGCCGTNTANAATTTTNTTAGATCTATTCACAGTNCATTTCCAAATATAAAGGTCTATGCTTTNTTGCANATTTTATTTCTCATCTTTTCTAATTTCAGCTCCCGACNATTGGCAAATACAAAAAGAGNCAATGTGATGNAANTTTGCTCTCAAAAGCC-------AT----ATG--------AA--------------AG------GGACGTNTATTTGTAAAGCAGC-AAGNTC-TATGGTGTTCC-GAAA--GCGCCCTTCGTGATAGGACCTTGGGGNTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGNCCAACCCCNACCNTTAGCNTTGNAGAGAACAGCAACACTTGANTGACCACGTGGCCTATANGNCANGTNTAGGGTATGGNTANTCGCNCAAAGAGTTTATTAACCTCGCCACAGATTCCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACNCTGCCTNTGTACAATCGTGGTATANCAGTTTNAAAACTAGAAACACAACTCTNACATTAGGAAAGCCGCANANACTGTCATTGGTTCTCNC-CAAAAATACGNTNACTGGTGTGTTAGATAGCCACCCTAGTGANCTGGAAGGTGNCTTT----CAAAAATGTGACTTCNAGAACAGACCAGAAAACANTTGGAATGTCGACGAAACGGGCATANTCATGGAGCATACGCCGACGAATGTGCTATGTCTCAAAGGTACCACNCCACAAGCCATAACCTCCAATAGGGGAAA------AATGTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGNACG-TGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAANACNATTTCCTGAAGTTCGTT-CCG-ACTCATGGACACC---C-CT-T-AATT-TGTTTGATGNCCACAAANCGNACGTCANCCTTACTCTGACAGAGTGGGGCAAGGCTCACAACGTCGTTTTC-TTTNTCTTGC-------CANCTCTCATATCACACAGCTTCTTGATGTNAGATGTTTT-GGACACCTNAAGAANTGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCNGGCATGCNAATNACGCGCAGTANTGTTGCTGCCATATCCAGCAAGGCCTACAACAAGGGACTTACACCNGAGAACCTGATATCGCCATTCGGAAAGACAGGCATATGCCCTCTTGAAAGGAAACAGATACCAGAAATAAAAACNGCTCCATCCACNATATANCGCANCAANAATGAAANNGAAACCGAGCNACCTGAAACTAACTTTCTTGANAGCAGAAAAATCAANNAAGGCAGTGGANAGTGGCAAGGAAAGAAAANCTCAGCCTACAATATGT---AATNTGACGTCCCNATCNAANGAAGAAAAAANNNAACATTCAGCNACAGAACNAGAAANCANAAANAAAACCAAAGTCTCCANAAAGAAAAAAAGTNNGACAACAAAATCCACTGAAAAGCCATTTNNAAAANAAAAGNCATCTCCAAAACCTGGCACATCGNNAATAACTATCAATGGTGNTTGANGANAGTGATGACCAAACCATGGACAGTGANGTNCCAGAATCGGAAAAAGTGTTGCGT--GTG-CAAGAAACTGTCACCAGAGGCTNTCGACCTGGCCTACGCTGCTTGGAGTTNGCTNAGTGGGNNCAGTGTGATAATTGTAACCACTGGACACACTTNAAGTACTGTA--CCAAAGTCAAGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCNTCACTGTAACATAAATTT---ATTAAAATATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG----T-TTTTAGATAGCGAATTAA
Reference ( gi|1 ) : TATTACCGGTGA---------ATTACGT----ATTTA--------TAACGCTTGCGCATTAA--TG--------------CGTCGGTA--TTT------GTTT--ACATTGGTCACG--GCTATCTGTCATCCAGAAAAAAAACGT--AACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTATATA--------AA-TATGAACATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTGCTTGTGACATAGTATTCAATTT-TTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTCTTGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--T--AGC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCAATATTATGTAACTTTGCTCTCAAAGGC--------AT----ATG--------AA--------------AG------GGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGG--AGCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTTTTTAACCTCGCCACCGATTCCGTCATAAGTCTACATAAGAAAAAA-TCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG--CTCGCATAAAAA---GAT------------AGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAA-----TAATGTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC---CTCTGTTAATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTC-TTTGTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG--AAAAAAGAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAACAAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGTGT--GTG-CAAGAAACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCC--AGTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT---AAT-------TATTTCAAGATTAAAAAAAAA---------TGTAAATACATTATGATACAGCTGTAAATAAGACTGTTTTAGATAGTGAATTAA
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGA----ATTTA--------TAACGCTCGTGCATTAA--TGTACTCGGTCACTTCCGTCAGAA--TTT------GTTT--ATATATGTCACG--CCTATCTGTCATCTAGAAAAAA--CGT--GACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTATATA--------AA-TTTGAACTTTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTGCGTGTGACGTAGTATTCAATTT-TT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTCT---GTTTTTCTGGATGGGTAATTTTT---CATTTT-----AAC--TATATA--TTTTTTAGATCTATT---AGTTTATTTCC---TA-----GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCAATATGATGAAACT--GCTCTCAAAAGC--------AT----ATG--------AAGATGTCAAGGTAAAAG------GGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGA--AGCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATTAACCTCGCCACAGATTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTC-CAAAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAA-----GAATGTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-TCG-ATTCATGGGCACC---CATTATTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG----AGAAAAAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAACATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GTG-CAAGAAACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTACGCC--AGTCAGAGTTTAGAGGAGGGGC
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGA----ATTTC--------TATCGTTTGCGTATCAA--TGTACTTGGCTACATCCGCCGGTA--TTG------GTTT--ACAATAATCACC---CTATTTGTCATCCAGAAAAA-----TTGAACT---AGGTCA-TTTTA-CGGGTA-AGTATTGTTTTTTTTATGAAAATTCATAAA-------CTTTTTACCATATTATTA--TTTAGAAA--------AAATATGA----TATAT-ACTT---------------AT-----AAATCATT------ATACTTA--AATGTGACAGGGATAGTCTGCTACTG----------TGACGTAGTATTGTATTA-----CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC-TGTGTTTTTT
gi|11 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTACCGGTTA----------TTAC-TGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTG--------------C-TCCGTAACTTCCATCGGGCTTTAACATT--TAACGAAGCTACCTGTCATCC---AAGGAAACTG--AGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAAgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|7 : tatcgtacacgacccaatcaacggtaattattACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT--ATTTATATACTTGTGTTAC-TATAAAGTTTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCCCGTGAC---GTATT-AATGTATTTTCCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGTTGTTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTATT----CT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAAtc
gi|3 : TATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACAATG----ATAAATTTGCTTTTAAAAGCTT------ATCAAGATGTTAAAGTTAA--------------AG------GGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCCATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAACAGCA--ACT-GAGTGACCACGTGGCCTATATGTCAGGTATAGGGTATAGATAATCACGTAAAGAG--------------------TTCCG----AAG-------AAGAAAA----TATCTGATCCTGCCTATGT-CAA------TATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG--CTCG-------A---GCTA-----------AGATA--CACCC------ACT----GGTGTCTT------------ATGACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAAG------AATGTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGGTGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCATT-TCG-ACT
gi|16 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcTTGCTCTCAAAAGCCAACGAAGAT----GTC--------AA--------------AGTGAAATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTGTCC--GAAAATGCGCCCTTCGTGAT
gi|6 : agaaagaggcactatgcaataaaagAACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAA-GTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCA-GATAATGGTGGTATG--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAATT-CCT-ACTCATGGACACC---C------A----TGTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTC-TTCATCTTGC-------CATCTCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAc
gi|2 : TGGTGGAACACGTGTTCCAGCA
gi|14 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaatacctattatcggtgatttccgaaaattctgaatttataacgctcgtgcattaatgtactcggtcacttccgtcagaatttgtttatatatgtcacgcctatctgtcatctagaaaaaacgtgactataatgtcatttttacgagtaagaactgttttatttatgaacaatcataaagaaaaaataattatattcttaaatctatataaatttgaactttacatcactttattctcgagaaaacttttacaaacgtttcagtatgacaacgatcgtctgctattacaagtgcgtgtgacgtagtattcaatttttctgggaaccgaagtcactttattttcttatatggacaaaggaatgtacttaataaaacttctgtttttctggatgggtaatttttcattttaactatatattttttagatctattagtttatttcctagtttattttgttcatattttatttcccatcttttctaatttcagctcccaacaattggcaaatacaaaaagagccaatatgatgaaactgctctcaaaagcatatgaagatgtcaaggtaaaagggacgtctgtttgaaaagcagccaaactctatggtgttcctgaaagcacacttcgtgataggaccttggggctgcaacccgtttcagatggaaaaggaaggcaaatcaaccctggaccaaccccaacctttagcattgaagagaagcaacacttgactgatcatgtggcctataggacatatttaggatatggctattcgctcaaagagtttattaacctcgccacagatttcgccataagtctacaaaagaaaaaaatcatctgacactgcctttgtacaatcgtggtataacagttttaaaactagaaacacaactttgacattagaaaagccgcagaaactgtcattggttctctccaaaaatacgatcactggtgtgttagatagctattttagtgacctggaagatgattttcaaaaatgacttccagaacagaccagaaaacacttggaatgtcgacgaaacaggcatagtcatggagcacacgccaacgaatgtgttatgtctcaaaggtaccacaccacaagccataacctcaaataggggaaagaatgttactttcattggaatgggcagtgcATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACATAAACTGTAT---------------TGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATTCT-T--ATTATGTATGATGttttatatatttccaggaaaacggtggaatgctgatattttgcaaggagcatgttctggatcatccggaacagtcacagaatctggatggtccaactttgctgtattaatagagtatcttcaaaaccatttcctgaagttcgtttcgattcatgggcacccattattaattttgtttgatagccacaaatcagacgtcaactttactttgacagagtggggcaaggctcacaacgttgtcttctttttttttgccaccacacacctcacacatcacacagcctcttgatgaaggatgttttggacaccttaaaaactgctattacagcgaatgccaagcatttctttgaaagaatccaggcatgttaattacgcgcagtaatattgttgccatatccagcaaggcctacaacaaaggacttacaccggagaacttgatatcatcatttagaaagacaggcatataccctcttgaaaggaaacaaataccagaaataaaaactgctccatccacaatatagcataccaacaatgaaacagaaactgaaccacctgaaactaactttcttgagagcagaaaaatcaaaaaaagcagtagaaagtgagaaaaaaaatctcagcctacaatatgtttgacgtccccatccaaagaagaaaaaataaaacatttagctacagaaccagaaaccataaagaaaatcaaagtctccacaaagaaaagtttgacaataaaatccactgaaaagccatttgaaaaacaaaaaacatctccaaaacctggcacatcggcaataaatctggtgtttgaggacagtgatgatcaaaccatggacagtgatgttccagaatcggaaaaagagttgcgtgtgcaagaaactgtcaccagaggctctcgacctagtcttcactattgaatttgttcagtggggtcagtgtgacatttgcatgcactggacacatttgaagttctgtacgccagtcagagtttagaggaggggc
gi|4 : ACGTTGTTTTC-TTTCTCTT----------AACTCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATT-ACCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAGAAAAGC-------------TGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAG-AAAA-TGTTGCAT--ATG-TAAGAAACTGTCACCAGAGACTCTCGACCTAGCCTATACTGTT--GCATTTGTTCAGTAGGGTCA--GTG--------------TGG---CATTTA-----CT-----CC--AGT------TTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATTT---ATTAAAATATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG----T-TTTTAGATAGTGAATTAAatca
gi|8 : TGTTGCGTCTGTGGCAGAAGAATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGATt
gi|13 : GCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
gi|5 : tgttgcatcttagccagaagaatgctgcctCTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAAT-------TATTTCAATATTAAAAAAAAT---------TGTAAATACATTATGATACAGCTGTTAATAAGACTTTTTTAGATACCGAATTAAattagacgtatgaaaagttttattttttccc
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATTT---ATTAAAATATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG----T-TTTTAGATAGTGAATTAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 1 3333333 11111 11 1 2222 22222 1 333333 11 11 2222 222 1 33333333 3333 55555555555555 111 111 33333 2222222 11 3333333 22222222 555555555 6666666666 33 333 7777777777 33 1 11 11 11 11 444444444444444444444444444444444444444444444444 3 1 222 11 33 1111 1 11 11111 1 1 2222222222222222222222222222222 11111111 444444444444444 33 111 22222 22222 11 333333333 66666666666666666666 11 6666666 1 11 222 222222 3333 11 3333333 2 111111 111 22222 11 11 11 11 11111 1 44444444444 222222 2 4444444
lowQualScore : 333 00 4 0 2 44 22 1111111 11111 33 0 4444 33333 0 2 444444 44 33 8 0 1 9 1111 1 3 666 0 66666666 4444 2 3 3 00000000000000 777 3 222 33 6 00000 6 6666666 33 2 0 2222222 2 11111111 666666666 7 1 1 0000000000 1 1 00 1 7 7 777 0 11 0 1111111111 0 00 1 5 1 3 2 1 1 33 33 11 1 22 666666666666666666666666666666666666666666666666 2 1 11 0 1 0 3 444 33 2 2 1 3 7 3 1 88 1 1 1 00 2222 1 0 1 4 11 1 55 1 999999 66666 6 3 2 7 7 6 1 1 7 6 1 1 6 1 1 1 6666666666666666666666666666666 11111111 1 8888 11 222222222222222 1 1 2 1 44 2 7 1 2 33 777 55555 1 2 6 1 55555 0 8 0 5 1 0 11 222222222 1 1 1 8 8 99999999999999999999 55 1 11 1 0 2 1 22 1 5555555 4 2 1 0 3 1 1 1 1 1 1 0 1 0 11 11 44 88 6 6 88 7 1 1 7 1 11 1 1 22 0 0 1 1 555 0 0 1 777777 1 6 7 0000 1 6 0 1 1 1 333 0 0 1 1 1 1 1 7 1 7 7 22 0 999 22 1 44 22 8888888 1 1 1 0 1 1 3 111111 8 8 111 1 11111 6 1 1 22 22 6 1 11 0 8 0 1 11 66 33 11 1 77777 66 0 55555555555 444444 4 0 7777777 2
lowQualScore : ... .. . . . .. .. ....... ..... .. . .... ..... . . ...... .. .. . . . . .... . . ... . ........ .... . . . .............. ... . ... .. . ..... . ....... .. . . ....... . ........ ......... . . . .......... . . .. . . . ... . .. . .......... . .. . . . . . . . .. .. .. . .. ................................................ . . .. . . . . ... .. . . . . . . . .. . . . .. .... . . . . .. . .. . ...... ..... . . . . . . . . . . . . . . . . ............................... ........ . .... .. ............... . . . . .. . . . . .. ... ..... . . . . ..... . . . . . . .. ......... . . . . . .................... .. . .. . . . . .. . ....... . . . . . . . . . . . . . . .. .. .. .. . . .. . . . . . .. . . .. . . . . ... . . . ...... . . . .... . . . . . . ... . . . . . . . . . . . .. . ... .. . .. .. ....... . . . . . . . ...... . . ... . ..... . . . .. .. . . .. . . . . .. .. .. .. . ..... .. . ........... ...... . . ....... .
lowQualScore : 888 55 2 0 0 00 88 0000000 22222 88 0 0000 88888 0 5 888888 00 22 0 8 0 8 2222 0 0 555 0 22222222 0000 5 2 2 88888888888888 555 2 555 55 5 55555 5 5555555 88 0 2 5555555 0 88888888 000000000 3 0 0 3333333333 0 0 77 0 3 3 000 7 77 7 0000000000 7 00 0 0 0 2 0 0 0 88 55 00 0 55 222222222222222222222222222222222222222222222222 0 0 55 0 0 0 2 000 88 0 5 0 7 3 7 0 33 0 0 0 33 0000 0 7 0 0 77 0 77 0 000000 33333 7 3 0 7 3 7 0 0 3 7 0 0 7 0 0 0 3333333333333333333333333333333 33333333 0 3333 77 777777777777777 0 0 0 0 55 0 0 0 5 88 555 00000 0 0 5 0 22222 6 0 8 0 0 6 00 000000000 0 0 0 0 0 22222222222222222222 22 0 77 0 7 0 0 55 0 0000000 0 5 0 0 0 0 0 0 0 0 0 7 0 7 33 33 33 00 7 7 00 3 0 0 3 0 33 0 0 00 7 7 0 0 777 7 7 0 000000 0 7 3 7777 0 7 7 0 0 0 000 7 7 0 0 0 0 0 3 0 3 3 00 7 777 00 0 77 00 3333333 0 0 0 7 0 0 7 222222 0 0 222 0 88888 4 0 0 00 66 2 8 22 8 8 6 4 00 00 22 00 0 88888 88 0 55555555555 000000 0 0 2222222 0
consensus : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGTATTTGTTT--AC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGT-AACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGATA--GC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC-----TA---GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGCC-A----------T----A---TG--------AA--------------AGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCTG-AAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAA--GCAACACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TTAACCTCGCCACAGA-TTCCGCCATAAGTCTACA-AAGAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG--CTCGC-CAAAAA-A-----GCTG------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATAT-ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAG-AAT---GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAAT-GCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGT-TCCG-ATTCATGGGCACC----CN---TTA---ATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTCTTTNTCTT-GCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCA-CAAAAGCAGTAGAAAGCGG-AAGGAAAGAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAACAAAAA-CATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGGAAAA-GTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
Reference ( family-3095 ) : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTCGCGCATTAATGTACTCGGCCAC-T-CCGTCGGTATTCGTTT--AC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--C-T-AACTACAATGTCA-TTTTTACGGGTA-GGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAANTATATTATTAA-TTTAT-ATA--------AATATGAA-T-TTATATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTNTCAATGTGACANGGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATT-AAT---TTTT--CCGGGAACCGAAGTCACGTTATTTTCTTATAT-------GGACAAAGGAATGTACTCGATGAAACTTC--T-TG--TTTTTTTGGATGGGTAATTTTTTTTNATTNTGATAAAGCCGTNTANAATTTTNTTAGATCTATTCACAGTNCATTTCCAAATATAAAGGTCTATGCTTTNTTGCANATTTTATTTCTCATCTTTTCTAATTTCAGCTCCCGACNATTGGCAAATACAAAAAGAGNCA--ATGTGATGNAANTTTGCTCTCAAAAGCC-A----------T----A---TG--------AA--------------AGGGACGTNTATTTGTAAAGCAGC-AAGNTC-TATGGTGTTCC-G-AAA--GCGCCCTTCGTGATAGGACCTTGGGGNTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGNCCAACCCCNACCNTTAGCNTTGNAGAGAACAGCAACACTTGANTGACCACGTGGCCTATANGNCANGTNTAGGGTATGGNTANTCGCNCAAAGAGTTTATTAACCTCGCCACAGA-TTCCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACNCTGCCTNTGTACAATCGTGGTATANCAGTTTNAAAACTAGAAACACAACTCTNACATTAGGAAAGCCGCANANACTGTCATTGGTTCTCNC-CAAAAATACGNTNACTGGTGTGTTAGATAGCCACCCTAGTGANCTGGAAGGTGNCTTT----CAAAAATGTGACTTCNAGAACAGACCAGAAAACANTTGGAATGTCGACGAAACGGGCATANTCATGGAGCATACGCCGACGAATGTGCTATGTCTCAAAGGTACCACNCCACAAGCCATAACCTCCAATAGGGGAAA--AAT---GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGNAC-G-TGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAANACNATTTCCTGAAGTTCGT-TCCG-ACTCATGGACACC----CC---TTA---ATTT-GTTTGATGNCCACAAANCGNACGTCANCCTTACTCTGACAGAGTGGGGCAAGGCTCACAACGTCGTTTTCTTTNTCTT-GCCANC-------TCTCATATCACACAGCTTCTTGATGTNAGATGTTTT-GGACACCTNAAGAANTGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCNGGCATGCNAATNACGCGCAGTANTGTTGCTGCCATATCCAGCAAGGCCTACAACAAGGGACTTACACCNGAGAACCTGATATCGCCATTCGGAAAGACAGGCATATGCCCTCTTGAAAGGAAACAGATACCAGAAATAAAAACNGCTCCATCCACNATATANCGCANCAANAATGAAANNGAAACCGAGCNACCTGAAACTAACTTTCTTGANAGCAGAAAAATCAANNAAGGCAGTGGANAGTGGCAAGGAAAGAAAANCTCAGCCTACAATATGT---AATNTGACGTCCCNATCNAANGAAGAAAAAANNNAACATTCAGCNACAGAACNAGAAANCANAAANAAAACCAAAGTCTCCANAAAGAAAAAAAGTNNGACAACAAAATCCACTGAAAAGCCATTTNNAAAANAAAAGNCATCTCCAAAACCTGGCACATCGNNAATAACTATCAATGGTGNTTGANGANAGTGATGACCAAACCATGGACAGTGANGTNCCAGAATCGGAAAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTNTCGACCTGGCCTACGCTGCTTGGAGTTNGCTNAGTGGGNNCAGTGTGATAATTGTAACCACTGGACACACTTNAAGTACTGTA--CCAAAGTCAAGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCNTCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGCGAATTAA
gi|1 : TATTACCGGTGA---------ATTACGTATT-TATAACGCTTGCGCATTAATG---------------CGTCGGTATTTGTTT--AC-AT-TGGTCAC---GGC-TATCTGTCATCCAGAAAAAAAACGT-AACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTAT-ATA--------AATATGAA-CATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTG-C-TTGTGACATAGTATTCAAT---TTTTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTC--T-TGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--TA--GC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC-----TA---GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCA--ATATTATGTAACTTTGCTCTCAAAGGC--A----------T----A---TG--------AA--------------AGGGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTG-AAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGGA--GCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTTTTTAACCTCGCCACCGA-TTCCGTCATAAGTCTACATAAGAAAAAA-TCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG--CTCGCATAAAAAGA---------------TAGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAAT-AAT---GTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAAT-GCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGT-TCCG-ATTCATGGGCACC----CTCTGTTA---ATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTGTTTT-GCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATCA-CAAAAGCAGTAGAAAGCGGAAA--AAAGAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAACAAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGGAAAA-GTGTTGTGT--GT--G-CAAGAA-ACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCCA--GTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT--AATT-ATTTCAAGATT-----------AAAAAAAAA------TGTAAATACATTATGATACAGCTGTAAATAAGAC-TGTTTTAGATAGTGAATTAA
gi|11 : TATTACCGGTTATTACTGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTGCTCCGTAACTT-CCATCGG-----GCTTTAAC-AT-T--TAACGAAG-C-TACCTGTCATCCA-AGGAAA--C-TGAGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAA
gi|13 : tatcgtacacgacccaatcaacggtaattattTGTTGCAT--CTTAG-CCAGAAGAATGCTGCC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTtc
gi|14 : ATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACA-------------TAAA--CTGTATTGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATTC---TTA---TTAT-GTATGATGATCAattagacgtatgaaaagttttattttttccc
gi|16 : AGAAAGAGGCACTATGCAATAAAAGTT-GCTCTCAAAAGCC-AACGAAGATGTC----AAAGTG--------AA--------------ATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTG-TCC-G-AAAATGCGCCCTTCGTGAT
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGAATT-TATAACGCTCGTGCATTAATGTACTCGGTCAC-TTCCGTCAGAATTTGTTT--AT-ATATG-TCAC---G-CCTATCTGTCATCTAGAAAAAA--CGT-GACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTAT-ATA--------AATTTGAACT-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTG-CGT-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTC--T--G--TTTTTCTGGATGGGTAATTTTT---CATTTTAAC-------TATATA--TTTTTTAGATCTATT---AGTTTATTTCC-----TA---GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCA--ATATGATGAAACT--GCTCTCAAAAGC--A----------T----A---TG--------AAGATGTCAAGGTAAAAGGGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTG-AAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGAA--GCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATTAACCTCGCCACAGA-TTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTC-CAAAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAAG-AAT---GTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAAT-GCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGT-TTCG-ATTCATGGGCACC----CA---TTATTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG----AGAAAAAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAG---AAAAGTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAACATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTA--CGCCAGTCAGAGTTTAGAGGAGGGGCc
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGAATT-TCTATCGTTTGCGTATCAATGTACTTGGCTACAT-CCGCCGGTATTGGTTT--ACAAT-AA-TCAC---C-C-TATTTGTCATCCAGAAAAAT--T-G-AACT---AGGTCA--TTTTACGGGTA-AGTATTGTTTTTTTTATGAAAATTCAT-------AAACTTTTTACCATATTATT-A-TTTAGAAAA--------AATATGA-----TATAT-AC-TTAT--------------------AAATCATT---ATA----CTTAAATGTGACAGGGATAGTCTGCTACT------------GTGACGTAGTATT--GT---ATTA--CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC--TGTG--TTTTTT
gi|3 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACA--ATG--AT--AAATTTGCTTTTAAAAGCTTA----------TCAAGA---TGTTAAAGTTAA--------------AGGGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCC-ATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAACAGCAAC---TGAGTGACCACGTGGCCTATATGTCAGGTATAG------GGTAT--------AGA------TAATCACGTAA-AGAGTTCCG--------------AAGAAGAAAAT-ATCTGATCCTGCCTATGT-CAAT------ATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG--CTCG--------------AGCTA-------AGATA--CACCC------ACTGG----TGTCTT------------ATGACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAAG--AAT---GTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGG-TGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCAT-TTCG-ACTgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|4 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcACGTTGTTTTCTTTCTCTT----AAC-------TCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATTA-CCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAGAAAAG-------------CTGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAGAAAA--TGTTGCAT--AT--G-TAAGAA-ACTGTCACCAGAGACTCTCGACCTAGCCTATACTG-TTGCA-TTTGTTCAGTAGGGTCA--GTG--------------TGG---CATTT-----ACT-----CCA--------GTTTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAA
gi|5 : CTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAATTATTTCAATATT------------AAAAAAAAT-----TGTAAATACATTATGATACAGCTGTTAATAAGACTT-TTTTAGATACCGAATTAAt
gi|6 : AACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAAGTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCAG-ATAATGGTGGTAT-G--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAAT-TCCT-ACTCATGGACACC----C------A------T-GTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTCTTCATCTT-GCCATC-------TCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
gi|7 : ACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT-A-TTTAT-ATACTTGTGTTACTATAAAGT-TTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCC-C-GTGAC---GTATT-AATGTATTTT--CCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGT-TG--TTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTAT----TCT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAA
gi|8 : TGTTGCGTCTGT--GGCAGAAG-AATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGA
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAAtccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 222 1 2222 22222 1 11 11 11 2222 11 1 33333333 3333 55555555555555 111 33333 111 11 3333333 22222222 444444444 4444444444 11 222 3333333333 11 2 11 11 11 11 4444444444444444444444444444444444444444444 1 11 2 2 22222222 1 1 1 11 0000000000000000000000000 11 555555555555555 11111 22222 11 333333333 666666666666666 1 2222222 1 33 1 333333 3333 1 22 11 11 1 111111 111 11111 11 11 11 11111 1 44444444444 22222 1 3333333
lowQualScore : 333 00 4 0 44 22 55 777 3 3 0 4444 33333 0 2 33 9 00 33 8 0 1 9 1111 0 1 88 0 66666666 4444 2 3 3 00000000000000 777 3 888 22 6 00000 2 6 777 33 0 2222222 11111111 777777777 7 7777777777 88 7 7 333 8888888888 88 6 3 0 33 77 00 1 22 6666666666666666666666666666666666666666666 0 11 8 0 0 3 1 33 1 3 7 3 7 6 4 7 0 6 6 6 55555555 6 3 2 3 6 7 6 1 6 88 2222222222222222222222222 00 7 8888 000000000000000 3 1 2 0 44 7 0 1 3 88888 55555 1 2 6 1 8 0 8 0 5 1 0 11 222222222 1 0 8 8 000000000000000 3 11 0 2 0 1 2 5555555 0 1 2 1 0 1 0 0 3 0 33 7 6 6 7 7 7 0 0 3 0 000000 6 7 0000 6 0 1 7 7 7 999 3 00 88 88 0 3 6 111111 8 8 111 99999 6 0 1 0 1 3 1 77 0 8 0 1 11 66 22 11 77777 66 0 55555555555 77777 1 5 4444444
lowQualScore : ... .. . . .. .. .. ... . . . .... ..... . . .. . .. .. . . . . .... . . .. . ........ .... . . . .............. ... . ... .. . ..... . . ... .. . ....... ........ ......... . .......... .. . . ... .......... .. . . . .. .. .. . .. ........................................... . .. . . . . . .. . . . . . . . . . . . . ........ . . . . . . . . . .. ......................... .. . .... ............... . . . . .. . . . . ..... ..... . . . . . . . . . . . .. ......... . . . . ............... . .. . . . . . ....... . . . . . . . . . . .. . . . . . . . . . . ...... . . .... . . . . . . ... . .. .. .. . . . ...... . . ... ..... . . . . . . . .. . . . . .. .. .. .. ..... .. . ........... ..... . . .......
lowQualScore : 888 55 2 0 00 88 22 000 5 2 0 0000 88888 0 5 88 2 55 22 0 8 0 8 2222 8 0 55 0 22222222 0000 5 2 2 88888888888888 555 2 000 88 5 55555 5 5 555 88 2 5555555 88888888 000000000 3 7777777777 33 3 3 333 7777777777 33 7 2 2 88 00 00 0 55 2222222222222222222222222222222222222222222 2 55 8 2 0 2 2 88 0 7 3 7 3 7 0 3 7 7 7 7 00000000 7 3 0 3 7 3 7 0 7 33 0000000000000000000000000 33 3 3333 000000000000000 7 2 0 2 55 0 2 0 2 55555 00000 0 0 5 2 8 6 0 8 0 0 6 00 000000000 0 6 0 0 888888888888888 5 00 7 0 0 0 5 2222222 2 0 5 0 0 0 8 7 7 7 33 3 7 7 3 3 3 7 7 3 7 777777 7 3 7777 7 7 0 3 3 3 333 3 77 33 33 7 3 7 222222 0 0 222 00000 4 6 4 8 4 8 4 66 8 8 6 4 00 00 88 00 88888 88 0 55555555555 00000 0 5 5555555
consensus : TATTACCGGTGATTTCCGAAAATTCCGAATTTA-TAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGCC-------AT---G--ATG--------AA--------------AGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG--CTCGC--AAAA----A--GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAAGAAAGAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
Reference ( family-3095 ) : TATTACCGGTGATTTCCGAAAATTCCGAATTTA-TAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGTATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGCC-------AT------ATG--------AA--------------AGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCTGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCAACACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG--CTCGCCAAAAA----A--GCTG------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATAT-ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGGAAAGAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
gi|1 : TATTACCGGTGA---------ATTACGTATTTA-TAACGCTTGCGCATTAATG---------------CGTCGGTATTTGTTTAC-AT-TGGTCAC---GGC-TATCTGTCATCCAGAAAAAAAACGTAACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTAT-ATA--------AATATGAA-CATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTG-C-TTGTGACATAGTATTCAAT---TTTTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTC--T-TGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--T--AGC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCA--ATATTATGTAACTTTGCTCTCAAAGGC--------AT------ATG--------AA--------------AGGGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGGAGCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTT-TTTAACCTCGCCACCGA-TTCCGTCATAAGTCTACATA-AGAAAAAATCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG--CTCGCATAAAA----A--G--A------TAGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAATAA--T--GTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---TCTGTTAATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTC-TTTGTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAA-AAAGAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGTGT--GT--G-CAAGAA-ACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCCA--GTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT--AATT-ATTTCAAGATT-----------AAAAAAAAAT------GTAAATACATTATGATACAGCTGTAAATAAGAC-TGTTTTAGATAGTGAATTAA
gi|11 : TATTACCGGTTATTACTGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTGCTCCGTAACTT-CCATCGGGCTTTA---AC-AT-T--TAACGAAG-C-TACCTGTCATCCA-AGGAAA--CTGAGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAA
gi|13 : tatcgtacacgacccaatcaacggtaattattTGTTGCAT--CTTAG-CCAGAAGAATGCTGCC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTtc
gi|14 : ATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACA-------------TAAA--CTGTATTGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATT---C---TT-ATTATGTATGATGATCAattagacgtatgaaaagttttattttttccc
gi|16 : AGAAAGAGGCACTATGCAATAAAAGTT-GCTCTCAAAAGCCAACGAAGATGTCAAAGTG--------AA--------------ATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTGT--CCGAAAATGCGCCCTTCGTGAT
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGAATTTA-TAACGCTCGTGCATTAATGTACTCGGTCAC-TTCCGTCAGAATTTGTTTAT-ATATG-TCAC---G-CCTATCTGTCATCTAGAAAAAA--CGTGACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTAT-ATA--------AATTTGAACT-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTG-CGT-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTC--T--G--TTTTTCTGGATGGGTAATTTTT---CATTTTAA-----C--TATATA--TTTTTTAGATCTATT---AGTTTATTTCC---TA-----GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCA--ATATGATGAAACT--GCTCTCAAAAGC--------AT------ATG--------AAGATGTCAAGGTAAAAGGGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGAAGCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATT-AACCTCGCCACAGA-TTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTCCAAAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAAGAA--T--GTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-TCG-ATTCATGGGCACC----CATTA---TTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG----AGAAAAAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAG---AAAAGTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTA--CGCCAGTCAGAGTTTAGAGGAGGGGCc
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGAATTTC-TATCGTTTGCGTATCAATGTACTTGGCTACAT-CCGCCGGTATTGGTTTACAAT-AA-TCAC---C-C-TATTTGTCATCCAGAAAAAT--TG-AACT---AGGTCA--TTTTACGGGTA-AGTATTGTTTTTTTTATGAAAATTCAT-------AAACTTTTTACCATATTATT--ATTTAGAAAA--------AATATGA-----TATAT-AC-TTAT--------------------AAATCATT---ATA----CTTAAATGTGACAGGGATAGTCTGCTACT------------GTGACGTAGTATT--GT---ATTA--CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC--TGTG--TTTTTT
gi|3 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACA--ATG--AT--AAATTTGCTTTTAAAAGCTT------ATCAAG--ATGTTAAAGTTAA--------------AGGGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCCATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAA-CAGCAACTGAGTGACCACGTGGCCTATATGTCAGGTATAGGGTAT--------------AGA------T-AATCACGTAA-AGAGTTCCG-------------AA-GAAGAAAAT-ATCTGATCCTGCCTATGT-CAAT------ATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG--CTCG-----------A--GCTA-------AGATA--CACCC------ACTGG----TGTCTT----------ATG--ACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAA-GAA--T--GTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGGTGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCATT-TCG-ACTgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|4 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcACGTTGTTTTC-TTTCTCTT----------AACTCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATT-ACCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAG-AAAAGC-------------TGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAG-AAAA-TGTTGCAT--AT--G-TAAGAA-ACTGTCACCAGAGACTCTCGACCTAGCCTATACTG-TTGCA-TTTGTTCAGTAGGGTCAGTG----------------TGG---CATTT-----ACT-----CCA--------GTTTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAA
gi|5 : CTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAATTATTTCAATATT------------AAAAAAAAT-----TGTAAATACATTATGATACAGCTGTTAATAAGACTT-TTTTAGATACCGAATTAAt
gi|6 : AACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAAGTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCAG-ATAATGGTGGTATG--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAATT-CCT-ACTCATGGACACC----C---A----------TGTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTC-TTCATCTTGC-------CATCTCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
gi|7 : ACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT--ATTTAT-ATACTTGTGTTACTATAAAGT-TTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCC-C-GTGACGTA----TTAATGTATTTT--CCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGT-TG--TTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTAT----TCT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAA
gi|8 : TGTTGCGTCTGT--GGCAGAAG-AATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGA
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAAtccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 1 222 1 2222 22222 1 11 11 11 2222 11 1 33333333 3333 55555555555555 111 33333 111 11 3333333 22222222 444444444 4444444444 11 222 3333333333 11 2 11 11 11 11 444444444444444444444444444444444444444444 1 11 2 2 22222222 1 1 1 2222 000000000000000000000000000 11 33333 11 11111 22222 11 333333333 666666666666666 1 2222222 1 33 1 11 1 3333 1 22 11 11 1 111111 111 11111 11 11 11 11111 1 44444444444 22222 1 3333333
lowQualScore : 333 00 4 0 44 22 55 777 1 3 0 4444 33333 0 2 33 9 00 33 8 0 1 9 1111 0 1 88 0 66666666 4444 2 3 3 00000000000000 777 3 888 22 6 00000 2 6 777 33 0 2222222 11111111 777777777 7 7777777777 88 7 7 333 8888888888 88 6 3 0 33 77 00 1 22 999999999999999999999999999999999999999999 0 11 8 0 0 3 4 33 1 3 7 3 7 6 1 7 0 6 6 6 55555555 6 3 2 3 6 7 6 1 6 8888 444444444444444444444444444 00 7 8888 55555 88 3 1 2 0 44 7 0 1 3 88888 55555 1 2 6 1 8 0 8 0 5 1 0 11 222222222 1 0 8 8 000000000000000 3 11 0 2 0 1 2 5555555 0 1 2 1 0 1 0 0 3 0 33 7 6 6 7 7 7 0 0 3 0 33 6 3 6 7 0000 6 0 1 7 7 7 999 3 00 88 88 0 3 6 111111 8 8 111 99999 6 0 1 0 1 3 1 77 0 8 0 1 11 66 22 11 77777 66 0 55555555555 77777 1 5 4444444
lowQualScore : ... .. . . .. .. .. ... . . . .... ..... . . .. . .. .. . . . . .... . . .. . ........ .... . . . .............. ... . ... .. . ..... . . ... .. . ....... ........ ......... . .......... .. . . ... .......... .. . . . .. .. .. . .. .......................................... . .. . . . . . .. . . . . . . . . . . . . ........ . . . . . . . . . .... ........................... .. . .... ..... .. . . . . .. . . . . ..... ..... . . . . . . . . . . . .. ......... . . . . ............... . .. . . . . . ....... . . . . . . . . . . .. . . . . . . . . . . .. . . . . .... . . . . . . ... . .. .. .. . . . ...... . . ... ..... . . . . . . . .. . . . . .. .. .. .. ..... .. . ........... ..... . . .......
lowQualScore : 888 55 2 0 00 88 22 000 0 2 0 0000 88888 0 5 88 2 55 22 0 8 0 8 2222 8 0 55 0 22222222 0000 5 2 2 88888888888888 555 2 000 88 5 55555 5 5 555 88 2 5555555 88888888 000000000 3 7777777777 33 3 3 333 7777777777 33 7 2 2 88 00 00 0 55 888888888888888888888888888888888888888888 2 55 8 2 0 2 2 88 0 7 3 7 3 7 0 3 7 7 7 7 00000000 7 3 0 3 7 3 7 0 7 3333 777777777777777777777777777 33 3 3333 77777 33 7 2 0 2 55 0 2 0 2 55555 00000 0 0 5 2 8 6 0 8 0 0 6 00 000000000 0 6 0 0 888888888888888 5 00 7 0 0 0 5 2222222 2 0 5 0 0 0 8 7 7 7 33 3 7 7 3 3 3 7 7 3 7 77 7 3 7 3 7777 7 7 0 3 3 3 333 3 77 33 33 7 3 7 222222 0 0 222 00000 4 6 4 8 4 8 4 66 8 8 6 4 00 00 88 00 88888 88 0 55555555555 00000 0 5 5555555
consensus : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGT-TCCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
Reference ( family-3095 ) : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGT-TCCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGGAAAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
gi|1 : TATTACCGGTGA---------ATTACGTATT-TATAACGCTTGCGCATTAATG---------------CGTCGGTATTTGTTTAC-AT-TGGTCAC---GGC-TATCTGTCATCCAGAAAAAAAACGTAACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTAT-ATA--------AATATGAA-CATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTG-C-TTGTGACATAGTATTCAAT---TTTTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTC--T-TGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--T--AGC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCA--ATATTATGTAACTTTGCTCTCAAAGGC------------AT------A-----------TG--------AAAGGGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGGAGCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTT-TTTAACCTCGCCACCGA-TTCCGTCATAAGTCTACATA-AGAAAAAATCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG----CTCGCATAAAAA-------G--A------TAGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAATAA--T--GTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGT-TCCG-ATTCATGGGCACC----C---TCTGTTAATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTC-TTTGTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGGAAA-AAA-GAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGTGT--GT--G-CAAGAA-ACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCCA--GTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT--AATT-ATTTCAAGATT-----------AAAAAAAAAT------GTAAATACATTATGATACAGCTGTAAATAAGAC-TGTTTTAGATAGTGAATTAA
gi|11 : TATTACCGGTTATTACTGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTGCTCCGTAACTT-CCATCGGGCTTTA---AC-AT-T--TAACGAAG-C-TACCTGTCATCCA-AGGAAA--CTGAGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAA
gi|13 : tatcgtacacgacccaatcaacggtaattattTGTTGCAT--CTTAG-CCAGAAGAATGCTGCC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTtc
gi|14 : ATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACA-------------TAAA--CTGTATTGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATT---C---TT-ATTATGTATGATGATCAattagacgtatgaaaagttttattttttccc
gi|16 : AGAAAGAGGCACTATGCAATAAAAGTT-GCTCTCAAAAGC----CAACGAAGATGTCAAAG-----------TG--------AAATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTGT--CCGAAAATGCGCCCTTCGTGAT
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGAATT-TATAACGCTCGTGCATTAATGTACTCGGTCAC-TTCCGTCAGAATTTGTTTAT-ATATG-TCAC---G-CCTATCTGTCATCTAGAAAAAA--CGTGACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTAT-ATA--------AATTTGAACT-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTG-CGT-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTC--T--G--TTTTTCTGGATGGGTAATTTTT---CATTTTAA-----C--TATATA--TTTTTTAGATCTATT---AGTTTATTTCC---TA-----GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCA--ATATGATGAAACT--GCTCTCAAAAGCA---T-------ATG-----AAGATGTCAAGGTA--------AAAGGGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGAAGCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATT-AACCTCGCCACAGA-TTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTC-CA--AAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAAGAA--T--GTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGT-TTCG-ATTCATGGGCACC----CATTA---TTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG---AGAAA-AAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAG---AAAAGTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTA--CGCCAGTCAGAGTTTAGAGGAGGGGCc
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGAATT-TCTATCGTTTGCGTATCAATGTACTTGGCTACAT-CCGCCGGTATTGGTTTACAAT-AA-TCAC---C-C-TATTTGTCATCCAGAAAAAT--TG-AACT---AGGTCA--TTTTACGGGTA-AGTATTGTTTTTTTTATGAAAATTCAT-------AAACTTTTTACCATATTATT--ATTTAGAAAA--------AATATGA-----TATAT-AC-TTAT--------------------AAATCATT---ATA----CTTAAATGTGACAGGGATAGTCTGCTACT------------GTGACGTAGTATT--GT---ATTA--CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC--TGTG--TTTTTT
gi|3 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACA--ATG--AT--AAATTTGCTTTTAAAAGCTTATC-------AAG-----A-----------TGTTAAAGTTAAAGGGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCCATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAA-CAGCAACTGAGTGACCACGTGGCCTATATGTCAGGTATAGGGTAT--------------AGA------T-AATCACGTAA-AGAGTTCCG-------------AA-GAAGAAAAT-ATCTGATCCTGCCTATGT-CAAT------ATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG----CTCG-------A-------GCTA-------AGATA--CACCC------ACTGG----TGTCTT----------ATG--ACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAA-GAA--T--GTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGGTGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCAT-TTCG-ACTgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|4 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcACGTTGTTTTC-TTTCTCTT----------AACTCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATT-ACCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAG-AAAAGC-------------TGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAG-AAAA-TGTTGCAT--AT--G-TAAGAA-ACTGTCACCAGAGACTCTCGACCTAGCCTATACTG-TTGCA-TTTGTTCAGTAGGGTCAGTG----------------TGG---CATTT-----ACT-----CCA--------GTTTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAA
gi|5 : CTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAATTATTTCAATATT------------AAAAAAAAT-----TGTAAATACATTATGATACAGCTGTTAATAAGACTT-TTTTAGATACCGAATTAAt
gi|6 : AACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAAGTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCAG-ATAATGGTGGTATG--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAAT-TCCT-ACTCATGGACACC----C---A----------TGTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTC-TTCATCTTGC-------CATCTCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
gi|7 : ACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT--ATTTAT-ATACTTGTGTTACTATAAAGT-TTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCC-C-GTGACGTA----TTAATGTATTTT--CCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGT-TG--TTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTAT----TCT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAA
gi|8 : TGTTGCGTCTGT--GGCAGAAG-AATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGA
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAAtccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 1 222 1 2222 22222 1 11 11 11 2222 11 1 33333333 3333 55555555555555 111 33333 111 11 3333333 22222222 444444444 4444444444 11 222 3333333333 11 2 11 11 11 11 444444444444444444444444444444444444444444 1 11 2 2 22222222 1 1 1 2222 000000000000000000000000000 11 33333 11 11111 22222 11 333333333 666666666666666 1 2222222 1 33 1 22 1 3333 1 22 11 11 1 111111 111 11111 11 11 11 11111 1 44444444444 22222 1 3333333
lowQualScore : 333 00 4 0 44 22 55 777 1 3 0 4444 33333 0 2 33 9 00 33 8 0 1 9 1111 0 1 88 0 66666666 4444 2 3 3 00000000000000 777 3 888 22 6 00000 2 6 777 33 0 2222222 11111111 777777777 7 7777777777 88 7 7 333 8888888888 88 6 3 0 33 77 00 1 22 999999999999999999999999999999999999999999 0 11 8 0 0 3 4 33 1 3 7 3 7 6 1 7 0 6 6 6 55555555 6 3 2 3 6 7 6 1 6 8888 444444444444444444444444444 00 7 8888 55555 88 3 1 2 0 44 7 0 1 3 88888 55555 1 2 6 1 8 0 8 0 5 1 0 11 222222222 1 0 8 8 000000000000000 3 11 0 2 0 1 2 5555555 0 1 2 1 0 1 0 0 3 0 33 7 6 6 7 7 7 0 0 3 0 00 3 6 7 0000 6 0 1 7 7 7 999 3 00 88 88 0 3 6 111111 8 8 111 99999 6 0 1 0 1 3 1 77 0 8 0 1 11 66 22 11 77777 66 0 55555555555 77777 1 5 4444444
lowQualScore : ... .. . . .. .. .. ... . . . .... ..... . . .. . .. .. . . . . .... . . .. . ........ .... . . . .............. ... . ... .. . ..... . . ... .. . ....... ........ ......... . .......... .. . . ... .......... .. . . . .. .. .. . .. .......................................... . .. . . . . . .. . . . . . . . . . . . . ........ . . . . . . . . . .... ........................... .. . .... ..... .. . . . . .. . . . . ..... ..... . . . . . . . . . . . .. ......... . . . . ............... . .. . . . . . ....... . . . . . . . . . . .. . . . . . . . . . . .. . . . .... . . . . . . ... . .. .. .. . . . ...... . . ... ..... . . . . . . . .. . . . . .. .. .. .. ..... .. . ........... ..... . . .......
lowQualScore : 888 55 2 0 00 88 22 000 0 2 0 0000 88888 0 5 88 2 55 22 0 8 0 8 2222 8 0 55 0 22222222 0000 5 2 2 88888888888888 555 2 000 88 5 55555 5 5 555 88 2 5555555 88888888 000000000 3 7777777777 33 3 3 333 7777777777 33 7 2 2 88 00 00 0 55 888888888888888888888888888888888888888888 2 55 8 2 0 2 2 88 0 7 3 7 3 7 0 3 7 7 7 7 00000000 7 3 0 3 7 3 7 0 7 3333 777777777777777777777777777 33 3 3333 77777 33 7 2 0 2 55 0 2 0 2 55555 00000 0 0 5 2 8 6 0 8 0 0 6 00 000000000 0 6 0 0 888888888888888 5 00 7 0 0 0 5 2222222 2 0 5 0 0 0 8 7 7 7 33 3 7 7 3 3 3 7 7 3 7 00 3 7 3 7777 7 7 0 3 3 3 333 3 77 33 33 7 3 7 222222 0 0 222 00000 4 6 4 8 4 8 4 66 8 8 6 4 00 00 88 00 88888 88 0 55555555555 00000 0 5 5555555
consensus : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
Reference ( family-3095 ) : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
gi|1 : TATTACCGGTGA---------ATTACGTATT-TATAACGCTTGCGCATTAATG---------------CGTCGGTATTTGTTTAC-AT-TGGTCAC---GGC-TATCTGTCATCCAGAAAAAAAACGTAACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTAT-ATA--------AATATGAA-CATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTG-C-TTGTGACATAGTATTCAAT---TTTTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTC--T-TGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--T--AGC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCA--ATATTATGTAACTTTGCTCTCAAAGGC------------AT------A-----------TG--------AAAGGGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGGAGCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTT-TTTAACCTCGCCACCGA-TTCCGTCATAAGTCTACATA-AGAAAAAATCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG----CTCGCATAAAAA-------G--A------TAGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAATAA--T--GTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---TCTGTTAATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTC-TTTGTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAAAAA-GAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGTGT--GT--G-CAAGAA-ACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCCA--GTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT--AATT-ATTTCAAGATT-----------AAAAAAAAAT------GTAAATACATTATGATACAGCTGTAAATAAGAC-TGTTTTAGATAGTGAATTAA
gi|11 : TATTACCGGTTATTACTGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTGCTCCGTAACTT-CCATCGGGCTTTA---AC-AT-T--TAACGAAG-C-TACCTGTCATCCA-AGGAAA--CTGAGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAA
gi|13 : tatcgtacacgacccaatcaacggtaattattTGTTGCAT--CTTAG-CCAGAAGAATGCTGCC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTtc
gi|14 : ATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACA-------------TAAA--CTGTATTGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATT---C---TT-ATTATGTATGATGATCAattagacgtatgaaaagttttattttttccc
gi|16 : AGAAAGAGGCACTATGCAATAAAAGTT-GCTCTCAAAAGC----CAACGAAGATGTCAAAG-----------TG--------AAATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTGT--CCGAAAATGCGCCCTTCGTGAT
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGAATT-TATAACGCTCGTGCATTAATGTACTCGGTCAC-TTCCGTCAGAATTTGTTTAT-ATATG-TCAC---G-CCTATCTGTCATCTAGAAAAAA--CGTGACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTAT-ATA--------AATTTGAACT-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTG-CGT-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTC--T--G--TTTTTCTGGATGGGTAATTTTT---CATTTTAA-----C--TATATA--TTTTTTAGATCTATT---AGTTTATTTCC---TA-----GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCA--ATATGATGAAACT--GCTCTCAAAAGCA---T-------ATG-----AAGATGTCAAGGTA--------AAAGGGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGAAGCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATT-AACCTCGCCACAGA-TTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTC-CA--AAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAAGAA--T--GTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-TCG-ATTCATGGGCACC----CATTA---TTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG---AGAAA-AAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAG---AAAAGTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTA--CGCCAGTCAGAGTTTAGAGGAGGGGCc
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGAATT-TCTATCGTTTGCGTATCAATGTACTTGGCTACAT-CCGCCGGTATTGGTTTACAAT-AA-TCAC---C-C-TATTTGTCATCCAGAAAAAT--TG-AACT---AGGTCA--TTTTACGGGTA-AGTATTGTTTTTTTTATGAAAATTCAT-------AAACTTTTTACCATATTATT--ATTTAGAAAA--------AATATGA-----TATAT-AC-TTAT--------------------AAATCATT---ATA----CTTAAATGTGACAGGGATAGTCTGCTACT------------GTGACGTAGTATT--GT---ATTA--CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC--TGTG--TTTTTT
gi|3 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACA--ATG--AT--AAATTTGCTTTTAAAAGCTTATC-------AAG-----A-----------TGTTAAAGTTAAAGGGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCCATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAA-CAGCAACTGAGTGACCACGTGGCCTATATGTCAGGTATAGGGTAT--------------AGA------T-AATCACGTAA-AGAGTTCCG-------------AA-GAAGAAAAT-ATCTGATCCTGCCTATGT-CAAT------ATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG----CTCG-------A-------GCTA-------AGATA--CACCC------ACTGG----TGTCTT----------ATG--ACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAA-GAA--T--GTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGGTGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCATT-TCG-ACTgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|4 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcACGTTGTTTTC-TTTCTCTT----------AACTCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATT-ACCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAG-AAAAGC-------------TGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAG-AAAA-TGTTGCAT--AT--G-TAAGAA-ACTGTCACCAGAGACTCTCGACCTAGCCTATACTG-TTGCA-TTTGTTCAGTAGGGTCAGTG----------------TGG---CATTT-----ACT-----CCA--------GTTTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAA
gi|5 : CTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAATTATTTCAATATT------------AAAAAAAAT-----TGTAAATACATTATGATACAGCTGTTAATAAGACTT-TTTTAGATACCGAATTAAt
gi|6 : AACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAAGTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCAG-ATAATGGTGGTATG--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAATT-CCT-ACTCATGGACACC----C---A----------TGTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTC-TTCATCTTGC-------CATCTCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
gi|7 : ACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT--ATTTAT-ATACTTGTGTTACTATAAAGT-TTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCC-C-GTGACGTA----TTAATGTATTTT--CCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGT-TG--TTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTAT----TCT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAA
gi|8 : TGTTGCGTCTGT--GGCAGAAG-AATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGA
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAAtccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 1 222 1 2222 22222 1 11 11 11 2222 11 1 33333333 3333 55555555555555 111 33333 111 11 3333333 22222222 444444444 4444444444 11 222 3333333333 11 2 11 11 11 11 444444444444444444444444444444444444444444 1 11 2 2 22222222 1 1 1 2222 000000000000000000000000000 11 33333 11 11111 22222 11 333333333 666666666666666 1 2222222 1 33 1 22 1 3333 1 22 11 11 1 111111 111 11111 11 11 11 11111 1 44444444444 22222 1 3333333
lowQualScore : 333 00 4 0 44 22 55 777 1 3 0 4444 33333 0 2 33 9 00 33 8 0 1 9 1111 0 1 88 0 66666666 4444 2 3 3 00000000000000 777 3 888 22 6 00000 2 6 777 33 0 2222222 11111111 777777777 7 7777777777 88 7 7 333 8888888888 88 6 3 0 33 77 00 1 22 999999999999999999999999999999999999999999 0 11 8 0 0 3 4 33 1 3 7 3 7 6 1 7 0 6 6 6 55555555 6 3 2 3 6 7 6 1 6 8888 444444444444444444444444444 00 7 8888 55555 88 3 1 2 0 44 7 0 1 3 88888 55555 1 2 6 1 8 0 8 0 5 1 0 11 222222222 1 0 8 8 000000000000000 3 11 0 2 0 1 2 5555555 0 1 2 1 0 1 0 0 3 0 33 7 6 6 7 7 7 0 0 3 0 00 3 6 7 0000 6 0 1 7 7 7 999 3 00 88 88 0 3 6 111111 8 8 111 99999 6 0 1 0 1 3 1 77 0 8 0 1 11 66 22 11 77777 66 0 55555555555 77777 1 5 4444444
lowQualScore : ... .. . . .. .. .. ... . . . .... ..... . . .. . .. .. . . . . .... . . .. . ........ .... . . . .............. ... . ... .. . ..... . . ... .. . ....... ........ ......... . .......... .. . . ... .......... .. . . . .. .. .. . .. .......................................... . .. . . . . . .. . . . . . . . . . . . . ........ . . . . . . . . . .... ........................... .. . .... ..... .. . . . . .. . . . . ..... ..... . . . . . . . . . . . .. ......... . . . . ............... . .. . . . . . ....... . . . . . . . . . . .. . . . . . . . . . . .. . . . .... . . . . . . ... . .. .. .. . . . ...... . . ... ..... . . . . . . . .. . . . . .. .. .. .. ..... .. . ........... ..... . . .......
lowQualScore : 888 55 2 0 00 88 22 000 0 2 0 0000 88888 0 5 88 2 55 22 0 8 0 8 2222 8 0 55 0 22222222 0000 5 2 2 88888888888888 555 2 000 88 5 55555 5 5 555 88 2 5555555 88888888 000000000 3 7777777777 33 3 3 333 7777777777 33 7 2 2 88 00 00 0 55 888888888888888888888888888888888888888888 2 55 8 2 0 2 2 88 0 7 3 7 3 7 0 3 7 7 7 7 00000000 7 3 0 3 7 3 7 0 7 3333 777777777777777777777777777 33 3 3333 77777 33 7 2 0 2 55 0 2 0 2 55555 00000 0 0 5 2 8 6 0 8 0 0 6 00 000000000 0 6 0 0 888888888888888 5 00 7 0 0 0 5 2222222 2 0 5 0 0 0 8 7 7 7 33 3 7 7 3 3 3 7 7 3 7 00 3 7 3 7777 7 7 0 3 3 3 333 3 77 33 33 7 3 7 222222 0 0 222 00000 4 6 4 8 4 8 4 66 8 8 6 4 00 00 88 00 88888 88 0 55555555555 00000 0 5 5555555
consensus : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
Reference ( family-3095 ) : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
gi|1 : TATTACCGGTGA---------ATTACGTATT-TATAACGCTTGCGCATTAATG---------------CGTCGGTATTTGTTTAC-AT-TGGTCAC---GGC-TATCTGTCATCCAGAAAAAAAACGTAACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTAT-ATA--------AATATGAA-CATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTG-C-TTGTGACATAGTATTCAAT---TTTTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTC--T-TGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--T--AGC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCA--ATATTATGTAACTTTGCTCTCAAAGGC------------AT------A-----------TG--------AAAGGGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGGAGCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTT-TTTAACCTCGCCACCGA-TTCCGTCATAAGTCTACATA-AGAAAAAATCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG----CTCGCATAAAAA-------G--A------TAGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAATAA--T--GTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---TCTGTTAATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTC-TTTGTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAAAAA-GAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGTGT--GT--G-CAAGAA-ACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCCA--GTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT--AATT-ATTTCAAGATT-----------AAAAAAAAAT------GTAAATACATTATGATACAGCTGTAAATAAGAC-TGTTTTAGATAGTGAATTAA
gi|11 : TATTACCGGTTATTACTGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTGCTCCGTAACTT-CCATCGGGCTTTA---AC-AT-T--TAACGAAG-C-TACCTGTCATCCA-AGGAAA--CTGAGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAA
gi|13 : tatcgtacacgacccaatcaacggtaattattTGTTGCAT--CTTAG-CCAGAAGAATGCTGCC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTtc
gi|14 : ATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACA-------------TAAA--CTGTATTGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATT---C---TT-ATTATGTATGATGATCAattagacgtatgaaaagttttattttttccc
gi|16 : AGAAAGAGGCACTATGCAATAAAAGTT-GCTCTCAAAAGC----CAACGAAGATGTCAAAG-----------TG--------AAATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTGT--CCGAAAATGCGCCCTTCGTGAT
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGAATT-TATAACGCTCGTGCATTAATGTACTCGGTCAC-TTCCGTCAGAATTTGTTTAT-ATATG-TCAC---G-CCTATCTGTCATCTAGAAAAAA--CGTGACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTAT-ATA--------AATTTGAACT-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTG-CGT-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTC--T--G--TTTTTCTGGATGGGTAATTTTT---CATTTTAA-----C--TATATA--TTTTTTAGATCTATT---AGTTTATTTCC---TA-----GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCA--ATATGATGAAACT--GCTCTCAAAAGCA---T-------ATG-----AAGATGTCAAGGTA--------AAAGGGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGAAGCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATT-AACCTCGCCACAGA-TTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTC-CA--AAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAAGAA--T--GTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-TCG-ATTCATGGGCACC----CATTA---TTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG---AGAAA-AAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAG---AAAAGTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTA--CGCCAGTCAGAGTTTAGAGGAGGGGCc
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGAATT-TCTATCGTTTGCGTATCAATGTACTTGGCTACAT-CCGCCGGTATTGGTTTACAAT-AA-TCAC---C-C-TATTTGTCATCCAGAAAAAT--TG-AACT---AGGTCA--TTTTACGGGTA-AGTATTGTTTTTTTTATGAAAATTCAT-------AAACTTTTTACCATATTATT--ATTTAGAAAA--------AATATGA-----TATAT-AC-TTAT--------------------AAATCATT---ATA----CTTAAATGTGACAGGGATAGTCTGCTACT------------GTGACGTAGTATT--GT---ATTA--CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC--TGTG--TTTTTT
gi|3 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACA--ATG--AT--AAATTTGCTTTTAAAAGCTTATC-------AAG-----A-----------TGTTAAAGTTAAAGGGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCCATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAA-CAGCAACTGAGTGACCACGTGGCCTATATGTCAGGTATAGGGTAT--------------AGA------T-AATCACGTAA-AGAGTTCCG-------------AA-GAAGAAAAT-ATCTGATCCTGCCTATGT-CAAT------ATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG----CTCG-------A-------GCTA-------AGATA--CACCC------ACTGG----TGTCTT----------ATG--ACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAA-GAA--T--GTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGGTGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCATT-TCG-ACTgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|4 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcACGTTGTTTTC-TTTCTCTT----------AACTCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATT-ACCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAG-AAAAGC-------------TGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAG-AAAA-TGTTGCAT--AT--G-TAAGAA-ACTGTCACCAGAGACTCTCGACCTAGCCTATACTG-TTGCA-TTTGTTCAGTAGGGTCAGTG----------------TGG---CATTT-----ACT-----CCA--------GTTTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAA
gi|5 : CTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAATTATTTCAATATT------------AAAAAAAAT-----TGTAAATACATTATGATACAGCTGTTAATAAGACTT-TTTTAGATACCGAATTAAt
gi|6 : AACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAAGTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCAG-ATAATGGTGGTATG--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAATT-CCT-ACTCATGGACACC----C---A----------TGTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTC-TTCATCTTGC-------CATCTCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
gi|7 : ACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT--ATTTAT-ATACTTGTGTTACTATAAAGT-TTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCC-C-GTGACGTA----TTAATGTATTTT--CCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGT-TG--TTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTAT----TCT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAA
gi|8 : TGTTGCGTCTGT--GGCAGAAG-AATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGA
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAAtccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
blockSeqs : TTA A A TG CC TA TT G T A ATG GAAG C G . G AC TT G A A CTTT C AA A CTTGTGTT ACT C T T TGTAAAAAGTATGA ATA A GTT AC A CGT G C GTA . ATTATAG TGTTG TGGATGGGT T GATAAAGTCG AT T A CAC AAATATAAAG GC G A CT CA AA G TT CAACGAAGATGTCAAAGTG TT A A T C AT C C A C A G A T A G T GTTTATT C G C A C A C T C TTCT CAAAAATACGATCACTGGTGTGTT GC T AAGA T . C C A CG T A A ATTAA TAATA G A G A C A C A CC TTCTAAAAT G A T AAATTCTT A AT T T T G CACCACA A C A T A G GA T C G A T T A GC A G T T G A A A A TGA A A CT AA A G CTTA G G AGA TATT G A T A T AC T A . AA AG GT TTAGT TA T TAAAAAATAAA AAAGT T A AGACTT
blockSeqs : TTT T . TA CG TC TT A T . AA G . G . T AT T . T T . A . . . AGT C T T AG . A AAC GG G CCC G T . . . TGTG . . AAC . . . . TA . . A . TG GA C T ATATGAAGATGTCAAGGTA GA C . T T . A T . . . . G T T . . T . . . . . . . A . . GAGCTA . . . . . A A A TT T C A T . T A A G G . C A . . C . . CATTATTA T GC T . C G . T C T . C T . . . . . . . . . . . . . . T . . A . . . . . . . CTGT . . AGA TGTT A T C T C TG G T . CA GA . TT TT . TAAAAAATAAA AAAGT A . T
blockSeqs : TTT T . TA TG CT AT T . . T C . . . . . . . T . . A . . . . . . . . . . CT TG . . . . . . . TG A . . . A . TTATCAAGATGTTAAAGTT GT . . . A . C T G GA . C . T . T G . T . . . T . . T . . CA . TT C . A . . T . C . A GT . . . CTT G T T A T AC T A . AA AG . TT TA . . . T . T
blockSeqs : . T . . . . . A . . AT . . . CTT . A . . . . . A . . . .
blockSeqCons : ** AA
originalCons : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
finalCons : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 1 222 1 2222 22222 1 11 11 11 2222 11 1 33333333 3333 55555555555555 111 33333 111 11 3333333 22222222 444444444 4444444444 11 222 3333333333 11 2 11 11 11 11 444444444444444444444444444444444444444444 1 11 2 2 22222222 1 1 1 2222 000000000000000000000000000 11 33333 11 11111 22222 11 333333333 666666666666666 1 2222222 1 33 1 22 1 3333 1 22 11 11 1 111111 111 11111 11 11 11 11111 1 44444444444 22222 1 3333333
lowQualScore : 333 00 4 0 44 22 55 777 1 3 0 4444 33333 0 2 33 9 00 33 8 0 1 9 1111 0 1 88 0 66666666 4444 2 3 3 00000000000000 777 3 888 22 6 00000 2 6 777 33 0 2222222 11111111 777777777 7 7777777777 88 7 7 333 8888888888 88 6 3 0 33 77 00 1 22 999999999999999999999999999999999999999999 0 11 8 0 0 3 4 33 1 3 7 3 7 6 1 7 0 6 6 6 55555555 6 3 2 3 6 7 6 1 6 8888 444444444444444444444444444 00 7 8888 55555 88 3 1 2 0 44 7 0 1 3 88888 55555 1 2 6 1 8 0 8 0 5 1 0 11 222222222 1 0 8 8 000000000000000 3 11 0 2 0 1 2 5555555 0 1 2 1 0 1 0 0 3 0 33 7 6 6 7 7 7 0 0 3 0 00 3 6 7 0000 6 0 1 7 7 7 999 3 00 88 88 0 3 6 111111 8 8 111 99999 6 0 1 0 1 3 1 77 0 8 0 1 11 66 22 11 77777 66 0 55555555555 77777 1 5 4444444
lowQualScore : ... .. . . .. .. .. ... . . . .... ..... . . .. . .. .. . . . . .... . . .. . ........ .... . . . .............. ... . ... .. . ..... . . ... .. . ....... ........ ......... . .......... .. . . ... .......... .. . . . .. .. .. . .. .......................................... . .. . . . . . .. . . . . . . . . . . . . ........ . . . . . . . . . .... ........................... .. . .... ..... .. . . . . .. . . . . ..... ..... . . . . . . . . . . . .. ......... . . . . ............... . .. . . . . . ....... . . . . . . . . . . .. . . . . . . . . . . .. . . . .... . . . . . . ... . .. .. .. . . . ...... . . ... ..... . . . . . . . .. . . . . .. .. .. .. ..... .. . ........... ..... . . .......
lowQualScore : 888 55 2 0 00 88 22 000 0 2 0 0000 88888 0 5 88 2 55 22 0 8 0 8 2222 8 0 55 0 22222222 0000 5 2 2 88888888888888 555 2 000 88 5 55555 5 5 555 88 2 5555555 88888888 000000000 3 7777777777 33 3 3 333 7777777777 33 7 2 2 88 00 00 0 55 888888888888888888888888888888888888888888 2 55 8 2 0 2 2 88 0 7 3 7 3 7 0 3 7 7 7 7 00000000 7 3 0 3 7 3 7 0 7 3333 777777777777777777777777777 33 3 3333 77777 33 7 2 0 2 55 0 2 0 2 55555 00000 0 0 5 2 8 6 0 8 0 0 6 00 000000000 0 6 0 0 888888888888888 5 00 7 0 0 0 5 2222222 2 0 5 0 0 0 8 7 7 7 33 3 7 7 3 3 3 7 7 3 7 00 3 7 3 7777 7 7 0 3 3 3 333 3 77 33 33 7 3 7 222222 0 0 222 00000 4 6 4 8 4 8 4 66 8 8 6 4 00 00 88 00 88888 88 0 55555555555 00000 0 5 5555555
consensus : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
Reference ( family-3095 ) : TATTACCGGTGATTTCCGAAAATTCCGAATT-TATAACGCTTGCGCATTAATGTACTCGGTNAC-T-CCGTCGGNATTTGTTTAC-AT-TG-TCAC---G-C-TATCTGTCATCCAGAAAAAA--CGTAACTATAATGTCA-TTTTTACGGGTA-AGTACTGTTTTATTTATGAAAAATCATAAAGAAAAAA----TAATTATATTNTTAAATTTAT-ATA--------AATATGAA-T-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGCTTCAGTGTGACAGCGATCGTCTGCTACTGCAAGTG-C-C-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATGAAACTTC--T-TG--TTTTTTTGGA-----AATTTTTTTTCATTTTGAT--AGC--TTTATA--TTTATTAGATCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGGCA--ATGCGATGAAANTTTGCTCTCAAAAGC----C-------ATG-----A-----------TG--------AAAGGGATGTCTGTTTGTAAAGCAGCCAAGCTC-TATGGTGTTCCCGAAA--GCACNCTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGTCCAACCCCTACCTTTAGCATTGAAGAGAAGCANCACTTGACTGACCACGTGGCCTATATG-CAGATATAGGATATGGCTATTCGC-CAAAGAGCTT-TT-AACCTCGCCACAGA-TTCCGCCATAAGTCTACAAA-GAAAAAAATCATCTGACCCTGCCTTTGTACAATCGTGGTATAACAGTTTNAAAACTAGAAACACAACTCTGACATTAGGAAAGCCGCAGAAACTGTCATTGG----CTCGCA--AAAA-------GCTA------TAGATAGCTATTTTAGTGAACTGGAAGGTGTTTTT----CAAAAATG--ACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACGGGCATAGTCATGGAGCACACGCCAACGAATGTGCTATGTCTCAAAGGTACCACCCCACAAGCCATAACCTCNAATAGGGGAAAGAA--T--GTT-----ACCATCATTGGAATGGGCAGCGCTGCTGNAACACGTGTTCCGCCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTCCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCAAA--CTCTGCTGTA---------TTAATGGAGTATCTTNAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---N---TTAATTTTGTTTGATGGTCACAAATCGCACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTCGTCTTC-TTTNTCTTGCCACCACACACCTCNCACATCACACAGCCTCTTGATGTNGGATGTTTT-GGACNCCTTAAGAACCGCTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTACGCGCAGTAATGTTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATATCGTCATTTAGAAAG-CAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCGTACCAACAATGAAACAGAAACCGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAGAAA-GAAAATCTCAGCCTACAATATGT---AATTTGACGTCCCCATCCAAAGAAGAAAAAATNAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAAAAAGTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGCCTACGCTACTTGGAGTTTGTTCAGTGGGGTCAGTGTGACANTTGCANNCACTGGACACATTTNAAGTACTGTA--CCAAAGTCAGGGTTTTGAGGAGGGGCTCCACA--TTCCATTGTCCTCACTGTAACATAAATT---TATTAAAAT-ATTTCAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTNTGATACAGCTGCAAATGAGAC-T-TTTTAGATAGTGAATTAA
gi|1 : TATTACCGGTGA---------ATTACGTATT-TATAACGCTTGCGCATTAATG---------------CGTCGGTATTTGTTTAC-AT-TGGTCAC---GGC-TATCTGTCATCCAGAAAAAAAACGTAACTTTAATGTCA-TTTTAACGGGTA-AGTACTTTTTTATTGATGAAAAATCATAAAGAAAAAA----TAATTATATTCTTAAATTTAT-ATA--------AATATGAA-CATTACATCACTTTACTCTCG-------AG-----AAAACTTTT---ACAAACTCATCAGTATGACAGCGATCGACTGCTATTGCAAGTG-C-TTGTGACATAGTATTCAAT---TTTTTTCTGGGAACCGAAGTCACGTTATTTCCTTATAT-------GGACAAAGGAATGTACTTGATAAAACTTC--T-TGGGTTTTTTTAAA-----AATTTTTTTTCATTTT--T--AGC--TTTATA--TTTATTAGACCTATT---AATTTATTTTC---TA-----GTTTAT--TTTTTTTCATATTTTATTTCCCATCTTTTTT--TTTCAGCTCCCAACAATTGGCAAATACAAAACGAAGCA--ATATTATGTAACTTTGCTCTCAAAGGC------------AT------A-----------TG--------AAAGGGATGTCTGTTTACAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCAGTTTCAGATGGAAAAGGAAGGCAAATCAACCTTGGTCCAACCCCTACCTTTAGCATTGAAGAGGAGCACTACT-GACTGACCATGTGGCCTATATG-CAGATATAGGATATGGCTATTCGCGCAAAGAGCTT-TTTAACCTCGCCACCGA-TTCCGTCATAAGTCTACATA-AGAAAAAATCATCTGACCCTGCCTTTGCACAATCGTGGTATAACAGTTTCAAAACTAGAAACACAACTCTGACATTAGGAAAGACGCTGAAACTGTCATTGG----CTCGCATAAAAA-------G--A------TAGATAGTTATTTTAGTGAACTGGAAGGTGTTTTTTTTTCAAAAATATTACTTCGAGAACAGACCAGAAAACATTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACACCAACGAATGTGTTATGCCTCAAAGGTACCACCCCACAAGCCATAACCTCAAATAGGGGAAATAA--T--GTT-----ACTATCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCATCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATCTTTTG-CAAGGAGCATGACCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTCTGCTGTA---------TTAATGGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-CCG-ATTCATGGGCACC----C---TCTGTTAATTTTGTTTGATGGGCACAAATCACACGTCAACCTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTC-TTTGTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATATAGGATGTTTC-GGACCCCTTAAGAACCGTTATTACAGCGAATGCCAAGCGTTTCTTCGAAAGAATCCTGGCATGCAAATTATGCGCAGTAATGCTGCTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCCGAGAACTTGATTTCATCATTTAGAAAGTCAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACAGCTCCATCCACAATATATCATACCAACAATGAAACAGAAACTGAACCATCTGAAACTAACTTTCTTGAGAGCAGAAAAATC-ACAAAAGCAGTAGAAAGCGG-AAAAAA-GAAAATCTCAGCCTACAATATGTGGCAATTTGATGTCCCCATCCAAAGAAGAAAAAATGAAACATTTAACTACAGAACCAGAAACCATAAAGAAAACCAAAGTCTCCACAAAGAAAA---GTTTGACAATAAAATCCACTGGAAAGCCATTTGAAAAAC-AAAAACCATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACATTGATGATCAAACCATGGACAGCGAAGTTCCAGAATCGG-AAAAGTGTTGTGT--GT--G-CAAGAA-ACTGTCACTAGAGGCTCTCGACCTAGCCTACACTACT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTAAAGTTCTGTAATCCA--GTCAGAGTTTTGAGGAAGGGCTCCACA--TTCCACTGCCCTCACTGTAATATAAA------AT--AATT-ATTTCAAGATT-----------AAAAAAAAAT------GTAAATACATTATGATACAGCTGTAAATAAGAC-TGTTTTAGATAGTGAATTAA
gi|11 : TATTACCGGTTATTACTGAAAATTCAAAATTAAATAACACTTGCGCATTGAACTGCTCCGTAACTT-CCATCGGGCTTTA---AC-AT-T--TAACGAAG-C-TACCTGTCATCCA-AGGAAA--CTGAGCCACAATGCCATTTTTTACGAATAGGGTAC------ATTAATGAAAA
gi|13 : tatcgtacacgacccaatcaacggtaattattTGTTGCAT--CTTAG-CCAGAAGAATGCTGCC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCATTGGACACACTTTACATACTGTA--CCAAAGTCAAGGTTtc
gi|14 : ATATTTTGACACGGGGCATGTCCTTGGGCATCCGTAACAGTTACA-------------TAAA--CTGTATTGTA---------TTCATGGAGAATCTTGAGCACAATTGTCTGTAGTTTGTAACTGTATTCATGGACACCAAATT---C---TT-ATTATGTATGATGATCAattagacgtatgaaaagttttattttttccc
gi|16 : AGAAAGAGGCACTATGCAATAAAAGTT-GCTCTCAAAAGC----CAACGAAGATGTCAAAG-----------TG--------AAATGGGTGTTTATTTTTAAAGCAGCAAAGTTT-TATAGTGT--CCGAAAATGCGCCCTTCGTGAT
gi|2 : TATTATCGGTGATTTCCGAAAATTCTGAATT-TATAACGCTCGTGCATTAATGTACTCGGTCAC-TTCCGTCAGAATTTGTTTAT-ATATG-TCAC---G-CCTATCTGTCATCTAGAAAAAA--CGTGACTATAATGTCA-TTTTTACGAGTA-AGAACTGTTTTATTTATGAACAATCATAAAGAAAAAA----TAATTATATTCTTAAATCTAT-ATA--------AATTTGAACT-TTACATCACTTTATTCTCG-------AG-----AAAACTTTT---ACAAACGTTTCAGTATGACAACGATCGTCTGCTATTACAAGTG-CGT-GTGACGTAGTATTCAAT---TTTT--CTGGGAACCGAAGTCACTTTATTTTCTTATAT-------GGACAAAGGAATGTACTTAATAAAACTTC--T--G--TTTTTCTGGATGGGTAATTTTT---CATTTTAA-----C--TATATA--TTTTTTAGATCTATT---AGTTTATTTCC---TA-----GTTTAT--TTTGTT-CATATTTTATTTCCCATCTTTTCTAATTTCAGCTCCCAACAATTGGCAAATACAAAAAGAGCCA--ATATGATGAAACT--GCTCTCAAAAGCA---T-------ATG-----AAGATGTCAAGGTA--------AAAGGGACGTCTGTTTGAAAAGCAGCCAAACTC-TATGGTGTTCCTGAAA--GCACACTTCGTGATAGGACCTTGGGGCTGCAACCCGTTTCAGATGGAAAAGGAAGGCAAATCAACCCTGGACCAACCCCAACCTTTAGCATTGAAGAGAAGCAACACTTGACTGATCATGTGGCCTATAGGACATATTTAGGATATGGCTATTCGCTCAAAGAGTTTATT-AACCTCGCCACAGA-TTTCGCCATAAGTCTACAAAAGAAAAAAATCATCTGACACTGCCTTTGTACAATCGTGGTATAACAGTTTTAAAACTAGAAACACAACTTTGACATTAGAAAAGCCGCAGAAACTGTCATTGGTTCTCTC-CA--AAAATACGATCACTGGTGTGTTAGATAGCTATTTTAGTGACCTGGAAGATGATTTT----CAAAAATG--ACTTCCAGAACAGACCAGAAAACACTTGGAATGTCGACGAAACAGGCATAGTCATGGAGCACACGCCAACGAATGTGTTATGTCTCAAAGGTACCACACCACAAGCCATAACCTCAAATAGGGGAAAGAA--T--GTT-----ACTTTCATTGGAATGGGCAGTGCTGCTGGAACACGTGTTCCACCATTTTATATATTTCCAGGAAAACGGTGGAATGCTGATATTTTG-CAAGGAGCATGTTCTGGATCATCCGGAACAGTCACAGAATCTGGATGGTCCAA--CTTTGCTGTA---------TTAATAGAGTATCTTCAAAACCATTTCCTGAAGTTCGTT-TCG-ATTCATGGGCACC----CATTA---TTAATTTTGTTTGATAGCCACAAATCAGACGTCAACTTTACTTTGACAGAGTGGGGCAAGGCTCACAACGTTGTCTTCTTTTTTTTTGCCACCACACACCTCACACATCACACAGCCTCTTGATGAAGGATGTTTT-GGACACCTTAAAAACTGCTATTACAGCGAATGCCAAGCATTTCTTTGAAAGAATCCAGGCATGTTAATTACGCGCAGTAATATTGTTGCCATATCCAGCAAGGCCTACAACAAAGGACTTACACCGGAGAACTTGATATCATCATTTAGAAAGACAGGCATATACCCTCTTGAAAGGAAACAAATACCAGAAATAAAAACTGCTCCATCCACAATATAGCATACCAACAATGAAACAGAAACTGAACCACCTGAAACTAACTTTCTTGAGAGCAGAAAAATCAAAAAAAGCAGTAGAAAGTG---AGAAA-AAAAATCTCAGCCTACAATATG------TTTGACGTCCCCATCCAAAGAAGAAAAAATAAAACATTTAGCTACAGAACCAGAAACCATAAAGAAAATCAAAGTCTCCACAAAG---AAAAGTTTGACAATAAAATCCACTGAAAAGCCATTTGAAAAACAAAAAAC-ATCTCCAAAACCTGGCACATCGGCAATAA--ATC--TGGTGTTTGAGGACAGTGATGATCAAACCATGGACAGTGATGTTCCAGAATCGGAAAAAGAGTTGCGT--GT--G-CAAGAA-ACTGTCACCAGAGGCTCTCGACCTAGTCTTCACTATT--GAATTTGTTCAGTGGGGTCAGTGTGACATTTGCATGCACTGGACACATTTGAAGTTCTGTA--CGCCAGTCAGAGTTTAGAGGAGGGGCc
gi|3 : acgtttaaaatatcaaataatcaacatcttatcccctatgacccaattaccggttaataccTATTACCGGTGATTTCCAAAAATTCTGAATT-TCTATCGTTTGCGTATCAATGTACTTGGCTACAT-CCGCCGGTATTGGTTTACAAT-AA-TCAC---C-C-TATTTGTCATCCAGAAAAAT--TG-AACT---AGGTCA--TTTTACGGGTA-AGTATTGTTTTTTTTATGAAAATTCAT-------AAACTTTTTACCATATTATT--ATTTAGAAAA--------AATATGA-----TATAT-AC-TTAT--------------------AAATCATT---ATA----CTTAAATGTGACAGGGATAGTCTGCTACT------------GTGACGTAGTATT--GT---ATTA--CTGGGAACCAAAGTCACATTATTGCCTTATAT-------GAGCAATGGAATGTACTTGATGAAACTTC--TGTG--TTTTTT
gi|3 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactaccTATTTCTCATTTTTTCTAATTTCAGCTTCCGATTATTGATAAATATAAAAAGAGACA--ATG--AT--AAATTTGCTTTTAAAAGCTTATC-------AAG-----A-----------TGTTAAAGTTAAAGGGATGTAAATGTGTAAAACAGC-AAGGTCATATGGTGTTCCATAAA--GCACCCTTCGTGATAGAACCTTGGGGATGCAACCTGTTTCAGATGGAAAAGGAAGGCAA-----------TTTAACCCCT-CCATTAGCCTTATAGAGAA-CAGCAACTGAGTGACCACGTGGCCTATATGTCAGGTATAGGGTAT--------------AGA------T-AATCACGTAA-AGAGTTCCG-------------AA-GAAGAAAAT-ATCTGATCCTGCCTATGT-CAAT------ATACCAGTTTAAAAA----------AACTCTCACATTAAGAAAACCATATACACTATCATTGG----CTCG-------A-------GCTA-------AGATA--CACCC------ACTGG----TGTCTT----------ATG--ACTTTAAGAAAAGTCCAGAAAACAATTGAAATGTCGACGAGACAGGCATACTAATGGAGCATGTTCCAACAAAGGTGCTGTGTCTCAAATGTACCACTCCACAAGCCATAACCTCCAATAGGAGAA-GAA--T--GTA-----ACCATTATTGGAATGGGCAGCGCTGTTATAACACGTGTTCCACAGTTTTATATATTTCGAGAAAATCGGTGGGACGGTGATATTTTA-CAAAGAGCATGTCCTGGATCATCTGGAACAGTCACAGAATCTGGATGCTCAAACCCTCTGCTGTT---------TTATCGGAGTATCTTTAAAACAAATTTCTGAAGTTCATT-TCG-ACTgttgttgttgtttttgttgttttttttatggggaggaggggggctatttctcattttttctaatttcagcttccgattattgataaatataaaaagagacaatgataaatttgcttttaaaagcttatcaagatgttaaagttaaagggatgtaaatgtgtaaaacagcaaggtcatatggtgttccataaagcacccttcgtgatagaaccttggggatgcaacctgtttcagatggaaaaggaaggcaatttaacccctccattagccttatagagaacagcaactgagtgaccacgtggcctatatgtcaggtatagggtatagataatcacgtaaagagttccgaagaagaaaatatctgatcctgcctatgtcaatataccagtttaaaaaaactctcacattaagaaaaccatatacactatcattggctcgagctaagatacacccactggtgtcttatgactttaagaaaagtccagaaaacaattgaaatgtcgacgagacaggcatactaatggagcatgttccaacaaaggtgctgtgtctcaaatgtaccactccacaagccataacctccaataggagaagaatgtaaccattattggaatgggcagcgctgttataacacgtgttccacagttttatatatttcgagaaaatcggtgggacggtgatattttacaaagagcatgtcctggatcatctggaacagtcacagaatctggatgctcaaaccctctgctgttttatcggagtatctttaaaacaaatttctgaagttcatttcgact
gi|4 : cgtttatatttatattgtcgataagcaaacatatcttctatgaccctattacaggtgactacctattaccggtgatttccaaaaattctgaatttctatcgtttgcgtatcaatgtacttggctacatccgccggtattggtttacaataatcaccctatttgtcatccagaaaaattgaactaggtcattttacgggtaagtattgttttttttatgaaaattcataaactttttaccatattattatttagaaaaaatatgatatatacttataaatcattatacttaaatgtgacagggatagtctgctactgtgacgtagtattgtattactgggaaccaaagtcacattattgccttatatgagcaatggaatgtacttgatgaaacttctgtgttttttgttgttgttgtttttgttgttttttttatggggaggaggggggcACGTTGTTTTC-TTTCTCTT----------AACTCTCATATCACA--GCTTTTTGATATTAGATGTTTTTGGACCCCTCAAGAAATGCTATTACAGCGAATGTCAAGAGTTTCTTCGAAAGAATCCTGGTATGCAAATAACACGCAGTACTGTTGCTGCTATATCCAGTAAGGTCTACAACAAGGGACTTACACCTGAGAACCTAATATCGCCATTCGGAAA------CATA-GC-------AAAG---ACAG----CAGAAA--AAAACAGCTCCATCCACCATA-ATCGCAACAAAAATAAAAATGAAACCGAGCAACCTGAAACTAATTTTCTTGACAGCAGAAAAATT-ACCAAGGTAGTGAATAGTGGCAAGAAAAGAAAAACTCA-CC----ATATGT---AATAT-ATATCCCAATCAAATGAAGAAAAAAATCAACATTCAACAACAGAATAAGAAAATAAAAACAAAACCAA-GTCTCCAAAAAGAAAAAAAGTAAGACAACAAAATCCAC---------ATTTCTAAAAG-AAAAGC-------------TGGCACATCATAAATAACTATTAATAGTAGTTGATGAAAGTGATGACCAAACCATGGATAGTGAAGTACCAGAATCAG-AAAA-TGTTGCAT--AT--G-TAAGAA-ACTGTCACCAGAGACTCTCGACCTAGCCTATACTG-TTGCA-TTTGTTCAGTAGGGTCAGTG----------------TGG---CATTT-----ACT-----CCA--------GTTTTGAGAAGGGACGCCACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAA
gi|5 : CTCCACA--TTCCACTGCCCTCACTGTAATATAAATTAGTTATTTAAATTATTTCAATATT------------AAAAAAAAT-----TGTAAATACATTATGATACAGCTGTTAATAAGACTT-TTTTAGATACCGAATTAAt
gi|6 : AACAGACTAGAAAATATTTGGAATGTCGATGGAATGGGAACCATCATGGAGCATAGACCGTCAAATGTACTATG-CTCAAAGGTACCACCCAACAACCCATAACCTTCAATAGGGGAAAGAAATTAAGTTTAATAACCATCATTAGAATGGGCAGCACTGCTGTAACACATGTGCTGCCATTTTATATATTTCCAG-ATAATGGTGGTATG--------------AGGATCATGTCCTGGATCA----------TCACAGAGT-TGGTTGGTCAAA--CACAGGTGTATTCTAAAATTTAATAGAGTATCTTAAACGCCATTTCTCTAAGTTAATT-CCT-ACTCATGGACACC----C---A----------TGTTTGATGTTCATAAAGCGCATGTCATCCTTACTCTGACAGAGTGGGGCAAGGCTCACAATATCATTTTC-TTCATCTTGC-------CATCTCTCATATTACACAGCTACTTCATGTCAGATGTTTT-GGAAATCTGAAGAAcagatattcaacattttgttttttaatgataacagtatgtggacatatttctcataaacaacagaacatttacctagtagcacagtcaacaacatccagaggtatattttaccctatcaccggtatttagtatccgacattaacaaatattacggctcgacctacttattaaaaagctgattttaaaggtttgtaaattgtttgtttttttctaaatgttgttttttaatgaaaacatcaaatcagtgatatttattttaaattatataagttaattattgtgtgcaaatgagcaaaattcccttacgtcagaggtatttagtatcaccaggacatatgtgacaatattacatgtaata
gi|7 : ACGGGTT-GGTGTTGTTTTATTTATGAAATATCCTTAAGAAAAAA----TAAGTATACCAGT--ATTTAT-ATACTTGTGTTACTATAAAGT-TTTTATCTTTTTATTCTCGTGTAAAAAGTATGAAAAACTTTTATAACAAACAACTCGATGAGACATGAATCTTCTGCTGCAGCAAGTGCC-C-GTGACGTA----TTAATGTATTTT--CCGCAGACCGAAATAATGTTATCTTCTTATATATTATAGGGATTAAGGAATGTATTCGGTGAAACTTCTGT-TG--TTTGTT-----------TTTTTTTTAATTGTGATAAAGTCGTTTAAAATTTTAT----TCT-TTCACAATACATTTTTAAATATAAAGATCTATGCTTTTTTGTAGATTTTATTTCTCATCTCTTCTAATTTCAGCTCTCAA
gi|8 : TGTTGCGTCTGT--GGCAGAAG-AATGCCACC---TGCTGTCAATTTGGCTTACGT--CTTGGAGTTGGCTAAATGGGCACAGTGTGATAATTGTAACCACTGGACACACCATAAGTACTGTA--CCAAAGTCAAGGTTGTTAGGCGTGG-TTCACAGTTTTTTTTGTCCCAACTGTGA
gi|9 : CACA--TTCCATTGTCATCACTGTAACATAAATT---TATTAAAAT-ATTTTAATATTTAAAAAATAAAAAAAAAAAATAAAGTTGTAAATACATTTTGAT-CAGTTACAAATG-----T-TTTTAGATAGTGAATTAAtccagcaacaagtatataactatgcagatgctggtgacactaactgttgttttgttaaaaaaaaatacaatgaagtttaatttccccccctaatgacattcaaaatgacattatttactttgtttgttgcaaatacctgttttgtgtctaccaaattacactcaaaatgtatttgactgaagttatcaccttccaagacaatgttttc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACCATATCACCGGTATTTAGTAAACGACATTAACATATATGGCGGCTCGACATTCTTATTAAAAAGCTGATTTTAAAGGTTTGTAAATTGTTTGATGCATTTCTAAATGTTGTTTTTTTTAATGAAAACAGATCAAATCAGTGATATTTATTTTCAAATTATATAGTTAAGTTAATTATTGTGTGCAAATGAACAAAATTCGCTTATGTACCCGGTATAAATATCACCAGG
Unaligned ( gi|12 ): AAACTGGTGTTAAAGGTTTGTAAGTCGTTTATTGCATTTTAAAACGTTGTTTTATTCATAAAAAAAAAAGATCAATTCCGATATATCTAAATTATATAACTATGATAAATATTGTGTGCAAAGTGCAAAATATCGCTTACCGTCACCAGTATTTAATATCACCAGGATATGTTTATATGTAACAA
Unaligned ( gi|15 ): AAAAGTTTTATTTTTTCCCCTTATGACATTCAAAATGACATTATTACTATGTTTGTTGCAAATACCTGTTTTTTTCTATCAAGTTACACTCAAAATGAAATTGACTGAAGTTATCACCTTCCAGAACAATGTTTAC
Unaligned ( gi|17 ): CCCCTATGACCCAACTACCTGTGAATACTAATTGCTAGTAATTTCTAAAAAATCTGAGTGTTAAATGTTTGAATAAGTGTCTTGTGGTTCTTACATTAATTTTGTTT