lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 1 11 1 22222222222222222222222 111111 11 1111 1111111 2222222222222 22222 1 111 11 2222222222222222 1111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 11111 22
lowQualScore : 33 1 7 7 5 3 77 6 6 88 4 88 555 2 3 0 44444444444444444444444 44 44 777777 1 33 1 1 3 7777 0000000 0000000000000 3 22222 8 6 1 99 8 33 333 4 66 1 7777777777777777 1111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 22 5 22 7 99999 7 5 33
lowQualScore : .. . . . . . .. . . .. . .. ... . . . ....................... .. .. ...... . .. . . . .... ....... ............. . ..... . . . .. . .. ... . .. . ................ .... .............................................................................................................. . . .. . .. . ..... . . ..
lowQualScore : 00 4 0 0 1 0 33 8 6 00 0 77 444 6 1 6 44444444444444444444444 66 66 444444 0 22 6 8 3 8888 8888888 0000000000000 6 44444 6 7 5 88 2 33 888 4 77 6 7777777777777777 4444 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 5 22 0 11 2 66666 6 0 00
consensus : CTCTGAAAAC-CGCTGAAAGTGACAATATACGTGC-TTAAAGNCTNAATCCGTACTAAAAAAC-GC---TGACACGTACTGA-ATAAAAT-----A-TAC-------TTAT-AA--GTA--TTTCAGTACATT--GTCAGTANCTTAAAGGGTATTATAAGACCA-TTTG---TCAG-------CGCGTTT-------------CAGTCCA-TTT--GG-AAAATACAGGTAAATAGCGCAATTCAGAGCN-TCTGTTCCACTAGCGGTT-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACG--GTTGTCGCGTAT----TGNCATAA-G------AAT----T---N-AC--TT-------AAN--T----------T----ACTATT-ATCGAGT--ATANAATATGT--------G-T--A-T--AG--AATATTTA--TATAGACAA-TAATTACTACAAA----CTTCATTAATTAAAGAAA
Reference ( gi|3 ) : CTCTGTGAAC-CACTGAATGTGGCAATATACGTGA-TTAAAGACTGAATCGGTACTTAAAAAC-AC---TGACATGTACTGA-ATAAAAT-----T-TAT-------TTAT-TA--GTA--TTTCAGTACTTT--CTCAGTGCCTTAAAGGGTATTATAAGACCA-TTTA---TCAG-------CGCGTTT-------------CAGTCCA-TTT--AG-AAAATACAGGCAAATTGTGCAATTCAGAGTT-TCTGTTCCACTAGCAGTT-TTA-T-ATATCATTACTCGACTTGCGTTATATATTA-TCACG--GTTGTCGCATAT----TGGCATAA-G------AAT----T---T-AC--TT-------AAC--T----------T----ACTGTT-TTTGAGT--ATATAATATGTAT------G-T--A-T--AA--AATATTTA--TATAGACAA-TAATAACTACAAA----ATGCATCAATTGTAGAAA
gi|12 : CTCTGAAAAC-CACTGAAAGTGACAATATACGTGC-TTAAAGACTGAATCCATACTAAAAAAT-GC---TGACACA-ACTGG-ATAAAATATACATGTAC-------TTAT-AA--GTA--TTTCAGTACATT--GTCAATATCTTAAAGGGTAT---AAGACTA-TTTG---TCAG-------CGCGTTT-------------CATTCCA-TTT--GG-AAAATACAGGTAAATAGTGCAATTC--AGTC-TCTGTTCTA
gi|2 : aaCTCTGAAAAG-CTCTGGAAATCACATTATGCATGC-TTAAAGTCAAAATCGCTATTGAAAAAC-GC---TGACATGTACTGA-ATAAAAT-----A-TGT-------TTAT-AA--GTA--TTTAAGTACATT--GTCAGCATCTTAAAAGGTATCATAAGGTCA-ATTT---TCAG-------CGCGTTT-------------CAGTCCA-TTTAAAA-AAAATACAGGTAGACAGCGCAATGCATAGCA-TTTGTTTTACTAGCGGTT-GTA-TAATGCCAGCACGTGACTCCTGTT-------------G--CTTG-CGTGTAT----TGT--TAATG------AAT----T---G-AT--TT-------AGT--T----------TTAAAACTG------------GTACAGT-TGTCG------GCT--A-T--AG--AATATACACTTGTTGACAA-TATTAAACACTAA----CTGTATAAATTtaa
gi|23 : aaCTCTGAAAAC-CTCTGAAAGTGGCAATAaaaaataataatataataaattgccaga
gi|8 : aggaaCTGAAAAC-CGCCGAAAGTGACAATATACGCGC-TTAAAGGCCGAATCCATACTATAAAAC-GC---TGACACGTGCTGA-ATA-----------TA--------------A--GTA--TTTCAGTA-------------TCTTAAATGGTATTATAAGACCATTTTG---TCAGTGTGTTTTGCGTTT-------------CAGTCCA-TTT--GGAAAAATACAGG--------------TAGAGTC-TCTATTCCACTAGTTGTT-TTA-G-CTATCATTATGCGACTTGCGTTATAGCTTA-TCACG--GTTGTCGCATATG---TCGTATA----------------------------------------T----------T----ACTATG-GTCGAGT--------------------------A-T--AG--AATGTTTA--TATAGACAA-TAGTTACTACAAA----CTTCATTGATT
gi|4 : aAACACGCTGAAAGTGACAATATATGTGC-TTAAAGACTGAATCCATACTATCAAAC-GC---TGACACGTACTAA-ATACAAT-----A-TAC-------CAAT-AA--GTA--TTTTAATACATT--GTCAGTAGCTTAAAGGGTAGTGCAAGACCA-TTTG---TCAG-------CGCGTTT-------------CAGTTCA-TTT---G-GAAATACAGGTAAATAGTGCAATTCAGAGTC-TATGTTCCACTAGTTGTT-TCA-G-CTATCATTAC-------GTG------ATTA-TCAAG--GTTGTGGGATAT----TGACAT-A-G------AAA----T---T-AC--TT-------AAA--A----------A----ACTATT-ACCGGGT--ATAC-----------------------------ACTATTTA--TATAGACAA-TAGTTACTACAAA----CTTCATTAATTaaaaga
gi|11 : aAAC-CGCTGAAAGTGTCACTATGATTGC-TTAAAGACT------------AAAAAT-ATGCTTGACGTGTACAGA-ACAAAAT-----A-TAC-------CCAT-AA--GTA--TTTCAGTACATT--ATCAGCAGTCTAATGGGTATTATATGACCG-TTTA---TTAG-------CGCGTTC-------------CTGTC-----------------CAGGTAAATGGTGCATTTCAAAGTT-TCTGTTCCACTAGTGGTT-TTA-T-ATATCACTTCGTGATTTACGTaaaagtaaa
gi|21 : ttgaaAACACGCTTAAAATAACAAAATA-ATGACTTAAAGTCTTAATCGGTACTGACAAAC-GC---TGATATGTA
gi|5 : tatgcGACAATATACGTGC-ATAAAGGCTGAATCCATACTAAAAAACCAC---TGATACGTACTCA-ATCAAAT-----A-TAA-------TTAT-AA--GTA--TTTCCGTATATT--GTCAGTAGCTTAAAGGTTATTATTAGATCA-TTTG---TCAA-------CGCGTTT-------------CAGTCCA-TTT--GG-AAAATAGAGGTAAATAGTGCATTTAAGAGTC-TTAAATCAACTGTTAA-T-TTA-G-CTATCATTACGCGACTTGCGTTATAGATTA-TCGCG--GTTGTCGCATAT----TGACATAG-G------AAT----T---G-AC--TT-------AAA--T----------T----TCTATT-ATCGAGT--AAAGAATATG-----------------------------TA--CATAGACAA-TAATTACTACAAA----CTTCATTAATa
gi|7 : TAAAGTCTTACTTGTTACTGAAAAACTGC---TGACAGGTACTGA-ATAAAAT-----A-TATATCGTACTTAT-AA--GTA--TTGCAGGACATT--GTCAGTAATTCGGAAGGAATAATAAGACCA-TTTT---TCAG-------CGCGTTT-------------CAGACCA-TTTG-AA-AGAATACAGATAAAAAGCGCGATTCAGAGGTATCTGTTCCAATAGCGGTT-GTATT-ATAGCAGTACGTGACTCGCGTT----------------GTTGTCGAGTAT----TGTT-TAA-G------AATAGAAT---T-AG--TTTCAA---AATTGT----------T----ACAATT-GTCGGCT--ATGGAATATATAC------G-T--G-TGGAC--AATAGTT
gi|17 : acgcgctgaaagTAAAGTCTTAATTAGTACTAGAAAAC-GC---TGACATGTACTGA-CTAA
gi|1 : aggaacgctgaagctagctgaaaaaaaaacaatataaaattatggacaAAAGCCTTACTCGGTATTGAAAATC-GC---TTACATTTACTGA-TTAAAAT-----A-TAC-------TTATATAACGTA--TTTCAGTACATT--GTCAGTACCTCAAACTGTACTTTAAGACCA-TTTT---TCAG-------AGCATTTTAGTTCGGTCTTTCAGTCCAATTG--AA-AGAATACAAATAAATATTGCAATTCAAAGCT-TCTGTTCCGCTAGCGGTT-TAA-T-ATATCATTACCTGAATCGCGTAATAGATTA-AAATA--GTTGTCACATAT----TAACATAT-G------TAT----T---A-AC--TTTATTGCAAAA--T----------T----CCTATT-ACCGAGT--ATAAGCTATTCAT------A-T--ATT--AAACAATATTTT--AATACACAt
gi|9 : cttatgtaacacagatatacaataggaactatgagaaaaaaactacaaactaTACTATAATAC-GC---TGACACGTTCTGA-ATAAAAT-----A-TAC-------TTAT-AA--GTA--TTTAAGTACATT--GTCATTATCTTTAATGGTAGTATGAGACCA-TTTG---TCAG-------CGCGTTC-------------CAGTCCA-TT---------------GTAAATAGTGCAATTCAGTGTC-TCTGTTCCACTAGTTGTT-TCA-G-CTATCATTACGCGACTTGCTTTATATATTA-TCAGG--GTTGTCGCATAT----TGACATTG-G------AAT----T---G-AC--TT-------AAA--T----------T----ACTGTT-AT--AGT--ACAGAATATG-----------------------------TA--TATAGATAA-TGATTACTACAAA----CTTCATTAActtcattaatcaaaagaaat
gi|16 : aTTAAAAAC-GC---TTACAAGTACTGA-ATATAAT-----A-TAC-------TTAataataagaaataa
gi|7 : aggaaccatgaaatgcgctgaaagcagttattcactgaaacatcttaaaggctaAAT-AC---TTATAAGTAC-GATATATATT-----T-TAT-------TCA------GTACCTGTCAGCAGTTT--TTCAGTAAC---AAG-------TAAGAC---TTTACTTTCAG-------CGCGTcaactgt
gi|6 : -ACAAAAT-----A-TAC-------T-AT-TA--GTA--TTTCAGTACATTGCCTTA---CCTCAATATGTATCATTTGATCA-TTT----TAAG-------CGCTTTG-------------CAGTTCA-TTT--GA-AAAATACAGATAAACAGCGATGTTCAGAGCA-ATTATTCTACTAGCGCTT-GTACT-AAAGTAGTACGTGTCTAGCATTACAAACTA--------GTTGTCGTGTAT----TGTT-TAT-G------AAT----TGAAT-AT--TT-------AGT--TACACAGTTGGT----ACAATT-GTCGACT--ATACAATATGTATATACTCG-T--A-T--AC--AATATCT--------ACAA-T-ATAG-TACAAA----ATGTATgcaggacattgtcagtaattcggaaggaataataagaccatttttcagcgcgtttcagaccatttgaaagaatacagataaaaagcgcgattcagaggtatctgttccaatagcggttgtattatagcagtacgtgactcgcgttgttgtcgagtattgtttaagaatagaattagtttcaaaattgttacaattgtcggctatggaatatatacgtgtggacaatagtt
gi|10 : actctaaaacatgcttaaaatgAT-----A-TAC-------TTAT-AC--GTA--TTTCAATACATT--GTTAATACCTCTAAAGGTATTATAAGAACG-TCT----TTAG-------CGCTTTG-------------CATTCCA-TTT---G-AAAATACAGGTTAATAGCGCAGTTCAGCGCA-TCTGTTCGACTAGCGATTGTTT-T-ATACCAATACGTTACTCGTGTTAGAAGCTAGTTATA--GTTATTGTGTAT----TGTTCT-A-G------AA---------------TT-------AAT--T----------T----A--GTT-TCAAAATTGGTACACT-TGTCG------GCT--A-T--AG--AATATCCAATCGTAGACAATTGTTAAC-ACAAACTTTATAAATCAAttttcaaaaaaaaata
gi|13 : CAGGTAAACAGCGCAGTTGAGAGCA-TCTGTTCAACTAGCGGTT-GTA-TTATATCA------GAC----GTT------TC-TCAGGTTGTTGTCGCGTATAATTTAACA--A-GTGATACAGT----T---TCACAATT-------AA--------------T----ACAATTATCTGA-T--ATAGAATATATATTT----G-TGGA-T--AA--AATGTTTaaatg
gi|18 : aacagtAGGTAATCAGCGCAGTTCAGTGCA-TCTGGGTCACTAGCGGTT-GTACT-ATATAAATACGCGGATCGCGTTATA-ACTAGTAATA--GTTATCGCGTtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|15 : TAGCTGTT-TTA-T-ATATCATTACGCGACTTGCGTTACATATTA-TCACG--GTAGTCGCA
gi|14 : aaTATCATTACACAACTTGTGTTATAGAT-G-TCATG--GTTGTCGTATAT----TGACATAG-G------AAT----T---G-AC--TA-------AAA--C----------T----ACTATT-ATCGAG------------------------T--A-T--AG--AATTTTTA--TATAGACAA-TAATTACTA-AAA----CTTCATTAATTAAAGAAActtaatagacttaagttatcgatatggacaataattactacaaactgctttcattatgagaaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CGTTTCAATTTCCTATTCGCATAATGCAGATAATAAATATAGGAATTAAAAAATATATTATAAGGATATTTTCAAGTATAAGAACA
Unaligned ( gi|20 ): TAGGAACTCTGAAAAGCACTCAAAGTTACCATGTAAATGCTTAACGTCTAAATCATATACCGATTTAAAAATAC
Unaligned ( gi|22 ): GTTCCATATATATATATACTATATATATAGGGA
Alignments
lowQualScore : 111111 11 1111111 11 1111111 1111111111111 111 11111 111111111 1111 22222222222222222222222222222222222 88888888888888888888888888888888888888
lowQualScore : 7 44 999999 666666 77777 4 5 00 2 5 2 4 888888 0000000 44 3 1 1 00 0000000 8888888888888 5555 6 3 0 2 1 0 555 2 222 3 0 33 4 33333 6666 111111111 3 44 0000 44 88888888888888888888888888888888888 0 66 99999999999999999999999999999999999999 1 0 77 4 99
lowQualScore : . .. ...... ...... ..... . . .. . . . . ...... ....... .. . . . .. ....... ............. .... . . . . . . ... . ... . . .. . ..... .... ......... . .. .... .. ................................... . .. ...................................... . . .. . ..
lowQualScore : 3 66 777777 222222 77777 0 1 33 9 7 9 0 888888 0000000 22 1 0 6 66 8888888 3333333333333 1111 7 3 7 9 0 1 000 9 111 5 8 11 8 33333 5555 999999999 1 22 5555 22 22222222222222222222222222222222222 2 66 55555555555555555555555555555555555555 6 3 88 0 55
consensus : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTA----TTGNCA--TAG-GA-A--TT---GAC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AAGAAA
Reference ( family-3084 ) : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTNAATCCGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTA----TTGNCA--TAA-GA-A--TT---NAC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-ATTACTACAAACTTCATTAATT-A--AAGAAA
gi|1 : ------CT-----AAAAGCCTTACTCGGTATTGAAAA-TC-GCT-TACATTTACTGATTAAAATA------TA-------CTTATATAACGTATTTCAGTACATTGTCAGTACCTCAAACTGTACTTTAAGACCATTT-TTCAGAG-------CATTTTAGTTCGGTCTTTCAGTCCAATT--GAAAGAA-TACAAATAAATATTGCAATTCAAA-GCTTCTGTTCCGCTAGCGGT---T-TAA-T-ATATCATTACCTGAATCGCGTAATAGATTA-AAATAGTTGTCACATA----TTAACA--TAT-GT-A--TT---AAC--TTTATTGCAAAAT----------T----CCT------ATTACCGAGTATAAGCTA------TT--C-A--TAT------AT---------TAAACAATATTTTAATACACACTTCATTAATCAA--AAGAAA
gi|10 : cttatgtaacacagatatacaataggaactatgagaaaaaaactacaaaATA------TA-------CTTATA--C-GTATTTCAATACATTGTTAATACCTCTAAAGGTATTATAAGAACGTCT--TTAGCG-------CTTTG-------------CATTCCATTT--G-AA-AA-TACAGGTTAATAGCGCAGTTCAGC-GCATCTGTTCGACTAGCGAT---TGTTT-T-ATACCAATACGTTACTCGTGTTAGAAGCTAGTTATAGTTATTGTGTA----TTGTTC--T-A-GA-A--TT---AAT--TT-------AGTT----------T------C------AAAATTG-GTACAC--T-------TG--TCGGCTATA---GAATATCCAATCGTAGACAATT-GTTAACACAAACTTTATAAATC-A--AAAAt
gi|11 : TGAAAAC-CGCTGAAAGTGT--CACTATG----ATTG------CT-----TAAAG-----------ACTAAAAATAT-GCTTGACGTGTACAGAACAAAATA------TA-------CCCATA--A-GTATTTCAGTACATTATCAGCAGTCTAATGGGTATTATATGACCGTTT-ATTAGCG-------CGTTC-------------CTGTC-----------------CAGGTAAATGGTGCATTTCAAA-GTTTCTGTTCCACTAGTGGT---T-TTA-T-ATATCACTTCGTGATTTACGTtg
gi|12 : tCTCTGAAAAC-CACTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGACTGAATCCATACTAAAAA-AT-GCT-GACACA-ACTGGATAAAATATACATGTA-------CTTATA--A-GTATTTCAGTACATTGTCAATATCTTAAAGGG---TATAAGACTATTT-GTCAGCG-------CGTTT-------------CATTCCATTT--GGAA-AA-TACAGGTAAATAGTGCAATTC--A-GTCTCTGTTCTA
gi|13 : aaCAGGTAAACAGCGCAGTTGAGA-GCATCTGTTCAACTAGCGGT---T-GTATT-ATATCA-GACGTTTCTC-------AGGTT-------GTTGTCGCGTATAATTTAACAAGTGA-TACAGTTT---CACAATT-------AA------------T----ACA------ATTATCTGATATAGAATATATATTTG--T-G--GATA---AAATGTTTtaa
gi|14 : aacagtTATCATTACACAACTTGTGTTATAGAT-G-TCATGGTTGTCGTATA----TTGACA--TAG-GA-A--TT---GAC--TA-------AAAC----------T----ACT------ATTATCGAGTATA---------------------------GAATTTTTA--TATAGACAATA-ATTACTA-AAACTTCATTAATT-A--AAGAAAtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|15 : tccaacgcgttactgtagcTAGCTGT---T-TTA-T-ATATCATTACGCGACTTGCGTTACATATTA-TCACGGTAGTCGCAC-----TT-----------A-A--TA---GAC--TT-------AAG--------------------------TTATCG--------ATA------TG-----------------------------GACAATA-ATTACTACAAACTGCTTTCATT-AT-GAGAAA
gi|16 : aaTGAAATG-CGCTGAAAGCAG--TTATTCA----C-TGAAACATCT-----TAAAGGCT--------ATTAAAAA--C-GCT-TACAAGTACTGAATATAATA------TA-------CTTACA--A-
gi|17 : aggaaccaCTGAAGCT-AGCTGAAAAAAAAACAATATAAAATTATGGA----CA-----TAAAGTCTTAATTAGTACTAGAAA-AC-GCT-GACATGTACTGACTAActgt
gi|18 : aggaacgAGGTAATCAGCGCAGTTCAGT-GCATCTGGGTCACTAGCGGT---T-GTACT-ATATAAATACGCGGATCGCGTTATA-ACTAGTAATAGTTATCGCGTt
gi|2 : CTCTGAAAAG-CTCTGGAAATCA--CATTATG----CATG------CT-----TAAAGTCAAAATCGCTATTGAAAA-AC-GCT-GACATGTACTGAATAAAATA------TG-------TTTATA--A-GTATTTAAGTACATTGTCAGCATCTTAAAAGGTATCATAAGGTCAATT-TTCAGCG-------CGTTT-------------CAGTCCATTTAAAAAA-AA-TACAGGTAGACAGCGCAATGCATA-GCATTTGTTTTACTAGCGGT---T-GTA-TAATGCCAGCACGTGACTCCTGTT-------------GCTTG-CGTGTA----TTGT----TAATGA-A--TT---GAT--TT-------AGTT----------TTAAAACTGGTACAGTTGTCGGCTATAGAATA------T-----------------ACACTTG--T-T-GACAATA-TTAAACACTAACTGTATAAATT-A--AAAA
gi|20 : aaCTCTGAAAAG-CACTCAAAGTTA--CCATGTA----AATG------CT-----TAACGTCTAAATCtaataatataataaattgccaga
gi|21 : taggaaAACACGCTTAAAATAA--CAAAATA-----ATGA-----CT-----TAAAGTCTTAATCGGTACTGACAA-AC-GCT-GATATGTAatataccgatttaaaaatac
gi|23 : tatgcCTCTGAAAAC-CTCTGAAAGTGG--CAATAa
gi|3 : aggaaCTCTGTGAAC-CACTGAATGTGG--CAATATA----CGTG------AT-----TAAAGACTGAATCGGTACTTAAAA-AC-ACT-GACATGTACTGAATAAAATT------TA-------TTTATT--A-GTATTTCAGTACTTTCTCAGTGCCTTAAAGGGTATTATAAGACCATTT-ATCAGCG-------CGTTT-------------CAGTCCATTT--AGAA-AA-TACAGGCAAATTGTGCAATTCAGA-GTTTCTGTTCCACTAGCAGT---T-TTA-T-ATATCATTACTCGACTTGCGTTATATATTA-TCACGGTTGTCGCATA----TTGGCA--TAA-GA-A--TT---TAC--TT-------AACT----------T----ACT------GTTTTTGAGTATATAATA------TGTAT-G--TATA---AAATATTTA--TATAGACAATA-ATAACTACAAAATGCATCAATT-G--TAGAAA
gi|4 : AAACACGCTGAAAGTGA--CAATATA----TGTG------CT-----TAAAGACTGAATCCATACTATCAA-AC-GCT-GACACGTACTAAATACAATA------TA-------CCAATA--A-GTATTTTAATACATTGTCAGTAGCTTAAAGGGTAGTGCAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTTCATTT--GG-A-AA-TACAGGTAAATAGTGCAATTCAGA-GTCTATGTTCCACTAGTTGT---T-TCA-G-CTATCATTACGT-------------GATTA-TCAAGGTTGTGGGATA----TTGACA--TAG-AA-A--TT----AC--TT-------AAAA----------A----ACT------ATTACCGGGTATAC---------------------------ACTATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AA
gi|5 : GA--CAATATA----CGTG------CA-----TAAAGGCTGAATCCATACTAAAAA-ACCACT-GATACGTACTCAATCAAATA------TA-------ATTATA--A-GTATTTCCGTATATTGTCAGTAGCTTAAAGGTTATTATTAGATCATTT-GTCAACG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TAGAGGTAAATAGTGCATTTAAGA-GTCTTAAATCAACT----GTTAAT-TTA-G-CTATCATTACGCGACTTGCGTTATAGATTA-TCGCGGTTGTCGCATA----TTGACA--TAG-GA-A--TT---GAC--TT-------AAAT----------T----TCT------ATTATCGAGTAAAGAATA------TG---------------------TA--CATAGACAATA-ATTACTACAAACTTCATTAATagtaaa
gi|6 : CTAAAAC-AT-GCT-TAAA---A-TGA-CAAAATA------TA-------CT-ATT--A-GTATTTCAGTACATTGCC-TTACCTCAATATGTATCATTTGATCATTT--TAAGCG-------CTTTG-------------CAGTTCATTT--GAAA-AA-TACAGATAAACAGCGATGTTCAGA-GCAATTATTCTACTAGCGCT---T-GTACT-AAAGTAGTACGTGTCTAGCATTACAAACTA------GTTGTCGTGTA----TTGTT---TAT-GA-A--TTGAATAT--TT-------AGTTACACAGTTGGT----ACA------ATTGTCGACTATACAATA------TG--T-A--TATACTCGTATA-CAA--TATCTACAATA---TAGTACAAAATGTATTTTTC-A--AAAAAA
gi|7 : actA----CGCG------CTGAAAGTAAAGTCTTACTTGTTACTGAAAA-ACTGCT-GACAGGTACTGAATAAAATA------TATATCGTACTTATA--A-GTATTGCAGGACATTGTCAGTAATTCGGAAGGAATAATAAGACCATTT-TTCAGCG-------CGTTT-------------CAGACCATTT--GAAAGAA-TACAGATAAAAAGCGCGATTCAGAGGTATCTGTTCCAATAGCGGT---T-GTATT-ATAGCAGTACGTGACTCGCGTT--------------GTTGTCGAGTA----TTGTT---TAA-GA-A--TA---GAA--TT-------AGTT----------TC---AAA------ATTGT------TACAAT-------TG--TCGGCTATG---GAATATATACGTGTGGACAATA-GTTaata
gi|8 : CTGAAAAC-CGCCGAAAGTGA--CAATATA----CGCG------CT-----TAAAGGCCGAATCCATACTATAAA-AC-GCT-GACACGTGCTGAATA------------------------TA--A-GTATTTCAGTA-----------TCTTAAATGGTATTATAAGACCATTTTGTCAGTGTGTTTTGCGTTT-------------CAGTCCATTT--GGAA-AAATACAGGTA--------------GA-GTCTCTATTCCACTAGTTGT---T-TTA-G-CTATCATTATGCGACTTGCGTTATAGCTTA-TCACGGTTGTCGCATA-----TGTCG--TA-------------------T-------A--T----------T----ACT------ATGGTCGA----------------------G--TATA---GAATGTTTA--TATAGACAATA-GTTACTACAAACTTCATTGATT-A--AA
gi|9 : aTACTATAAT-AC-GCT-GACACGTTCTGAATAAAATA------TA-------CTTATA--A-GTATTTAAGTACATTGTCATTATCTTTAATGGTAGTATGAGACCATTT-GTCAGCG-------CGTTC-------------CAGTCCATT----------------GTAAATAGTGCAATTCAGT-GTCTCTGTTCCACTAGTTGT---T-TCA-G-CTATCATTACGCGACTTGCTTTATATATTA-TCAGGGTTGTCGCATA----TTGACA--TTG-GA-A--TT---GAC--TT-------AAAT----------T----ACT------GTTAT--AGTACAGAATA------TG---------------------TA--TATAGATAATG-ATTACTACAAACTTCATTAAAT-AATAAGAAAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGTTTCAATTTCCTATTCGCATAATGCAGATAATAAATATAGGAATTAAAAAATATATTATAAGGATATTTTCAAGTATAAGAACA
Unaligned ( gi|22 ): GTTCCATATATATATATACTATATATATAGGGA
Alignments
lowQualScore : 111111 1111111 11 1111111 1111111111111 111 11111 11111111111 22222222222222222222222222222222222 99999999999999999999999999999999999999
lowQualScore : 7 44 999999 666666 77777 4 5 77 2 5 2 4 888888 0000000 44 3 1 1 00 0000000 8888888888888 555 6 3 0 2 1 0 555 2 222 3 0 33 4 33333 44444444444 333 7 7777 44 88888888888888888888888888888888888 0 3 33333333333333333333333333333333333333 1 0 88 4 99
lowQualScore : . .. ...... ...... ..... . . .. . . . . ...... ....... .. . . . .. ....... ............. ... . . . . . . ... . ... . . .. . ..... ........... ... . .... .. ................................... . . ...................................... . . .. . ..
lowQualScore : 3 66 777777 222222 77777 0 9 55 9 7 9 0 888888 0000000 22 1 0 6 66 8888888 3333333333333 666 7 3 7 9 0 1 000 9 111 5 8 11 8 33333 66666666666 555 8 5555 22 22222222222222222222222222222222222 2 8 33333333333333333333333333333333333333 6 3 33 0 55
consensus : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AAGAAA
Reference ( family-3084 ) : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AAGAAA
gi|1 : ------CT-----AAAAGCCTTACTCGGTATTGAAAA-TC-GCT-TACATTTACTGATTAAAATA------TA-------CTTATATAACGTATTTCAGTACATTGTCAGTACCTCAAACTGTACTTTAAGACCATTT-TTCAGAG-------CATTTTAGTTCGGTCTTTCAGTCCAATT--GAAAGAA-TACAAATAAATATTGCAATTCAAA-GCTTCTGTTCCGCTAGCGGT---T-TAA-T-ATATCATTACCTGAATCGCGTAATAGATTA-AAATAGTTGTCACATAT-----------TAACATATGTATTA---AC--TTTATTGCAAAAT----------T----CCT------ATTACCGAGTATAAGCTA------TT--C-A--TAT------AT---------TAAACAATATTTTAATACACACTTCATTAATCAA--AAGAAA
gi|10 : cttatgtaacacagatatacaataggaactatgagaaaaaaactacaaaATA------TA-------CTTATA--C-GTATTTCAATACATTGTTAATACCTCTAAAGGTATTATAAGAACGTCT--TTAGCG-------CTTTG-------------CATTCCATTT---GAA-AA-TACAGGTTAATAGCGCAGTTCAGC-GCATCTGTTCGACTAGCGAT---TGTTT-T-ATACCAATACGTTACTCGTGTTAGAAGCTAGTTATAGTTATTGTGTAT-----------TGTTCTA-GAATTA---AT--TT-------AGTT----------T------C------AAAATTG-GTACAC--T-------TG--TCGGCTATA---GAATATCCAATCGTAGACAATT-GTTAACACAAACTTTATAAATC-A--AAAAt
gi|11 : TGAAAAC-CGCTGAAAGTGT--CACTATG----ATTG------CT-----TAAAG-----------ACTAAAAATAT-GCTTGACGTGTACAGAACAAAATA------TA-------CCCATA--A-GTATTTCAGTACATTATCAGCAGTCTAATGGGTATTATATGACCGTTT-ATTAGCG-------CGTTC-------------CTGTC-----------------CAGGTAAATGGTGCATTTCAAA-GTTTCTGTTCCACTAGTGGT---T-TTA-T-ATATCACTTCGTGATTTACGTtg
gi|12 : tCTCTGAAAAC-CACTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGACTGAATCCATACTAAAAA-AT-GCT-GACACA-ACTGGATAAAATATACATGTA-------CTTATA--A-GTATTTCAGTACATTGTCAATATCTTAAAGGG---TATAAGACTATTT-GTCAGCG-------CGTTT-------------CATTCCATTT--GGAA-AA-TACAGGTAAATAGTGCAATTC--A-GTCTCTGTTCTA
gi|13 : aaCAGGTAAACAGCGCAGTTGAGA-GCATCTGTTCAACTAGCGGT---T-GTATT-ATATCA-GACGTTTCTC-------AGGTT-------GTTGTCGCGTATAATTTAACAAGTGATACAGT--TTC---ACAATT-------AA------------T----ACA------ATTATCTGATATAGAATATATATTTG--T-G--GATA---AAATGTTTtaa
gi|14 : aacagtTATCATTACACAACTTGTGTTATAGAT-G-TCATGGTTGTCGTATAT-----------TGACATAGGAATTG---AC--TA-------AAAC----------T----ACT------ATTATCGAGTATA---------------------------GAATTTTTA--TATAGACAATA-ATTACTA-AAACTTCATTAATT-A--AAGAAAtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|15 : tccaacgcgttactgtagcTAGCTGT---T-TTA-T-ATATCATTACGCGACTTGCGTTACATATTA-TCACGGTAGTCGCAC-T-----------T--------AATAG---AC--TT-------AAG--------------------------TTATCG--------ATA------TG-----------------------------GACAATA-ATTACTACAAACTGCTTTCATT-AT-GAGAAA
gi|16 : aaTGAAATG-CGCTGAAAGCAG--TTATTCA----C-TGAAACATCT-----TAAAGGCT--------ATTAAAAA--C-GCT-TACAAGTACTGAATATAATA------TA-------CTTACA--A-
gi|17 : aggaaccaCTGAAGCT-AGCTGAAAAAAAAACAATATAAAATTATGGA----CA-----TAAAGTCTTAATTAGTACTAGAAA-AC-GCT-GACATGTACTGACTAActgt
gi|18 : aggaacgAGGTAATCAGCGCAGTTCAGT-GCATCTGGGTCACTAGCGGT---T-GTACT-ATATAAATACGCGGATCGCGTTATA-ACTAGTAATAGTTATCGCGTt
gi|2 : CTCTGAAAAG-CTCTGGAAATCA--CATTATG----CATG------CT-----TAAAGTCAAAATCGCTATTGAAAA-AC-GCT-GACATGTACTGAATAAAATA------TG-------TTTATA--A-GTATTTAAGTACATTGTCAGCATCTTAAAAGGTATCATAAGGTCAATT-TTCAGCG-------CGTTT-------------CAGTCCATTTAAAAAA-AA-TACAGGTAGACAGCGCAATGCATA-GCATTTGTTTTACTAGCGGT---T-GTA-TAATGCCAGCACGTGACTCCTGTT-------------GCTTG-CGTGTAT-----------TGTTA-ATGAATTG---AT--TT-------AGTT----------TTAAAACTGGTACAGTTGTCGGCTATAGAATA------T-----------------ACACTTG--T-T-GACAATA-TTAAACACTAACTGTATAAATT-A--AAAA
gi|20 : aaCTCTGAAAAG-CACTCAAAGTTA--CCATGTA----AATG------CT-----TAACGTCTAAATCtaataatataataaattgccaga
gi|21 : taggaaAACACGCTTAAAATAA--CAAAATA-----ATGA-----CT-----TAAAGTCTTAATCGGTACTGACAA-AC-GCT-GATATGTAatataccgatttaaaaatac
gi|23 : tatgcCTCTGAAAAC-CTCTGAAAGTGG--CAATAa
gi|3 : aggaaCTCTGTGAAC-CACTGAATGTGG--CAATATA----CGTG------AT-----TAAAGACTGAATCGGTACTTAAAA-AC-ACT-GACATGTACTGAATAAAATT------TA-------TTTATT--A-GTATTTCAGTACTTTCTCAGTGCCTTAAAGGGTATTATAAGACCATTT-ATCAGCG-------CGTTT-------------CAGTCCATTT--AGAA-AA-TACAGGCAAATTGTGCAATTCAGA-GTTTCTGTTCCACTAGCAGT---T-TTA-T-ATATCATTACTCGACTTGCGTTATATATTA-TCACGGTTGTCGCATAT-----------TGGCATAAGAATTT---AC--TT-------AACT----------T----ACT------GTTTTTGAGTATATAATA------TGTAT-G--TATA---AAATATTTA--TATAGACAATA-ATAACTACAAAATGCATCAATT-G--TAGAAA
gi|4 : AAACACGCTGAAAGTGA--CAATATA----TGTG------CT-----TAAAGACTGAATCCATACTATCAA-AC-GCT-GACACGTACTAAATACAATA------TA-------CCAATA--A-GTATTTTAATACATTGTCAGTAGCTTAAAGGGTAGTGCAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTTCATTT--GG-A-AA-TACAGGTAAATAGTGCAATTCAGA-GTCTATGTTCCACTAGTTGT---T-TCA-G-CTATCATTACGT-------------GATTA-TCAAGGTTGTGGGATAT-----------TGACATAGAAATT----AC--TT-------AAAA----------A----ACT------ATTACCGGGTATAC---------------------------ACTATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AA
gi|5 : GA--CAATATA----CGTG------CA-----TAAAGGCTGAATCCATACTAAAAA-ACCACT-GATACGTACTCAATCAAATA------TA-------ATTATA--A-GTATTTCCGTATATTGTCAGTAGCTTAAAGGTTATTATTAGATCATTT-GTCAACG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TAGAGGTAAATAGTGCATTTAAGA-GTCTTAAATCAACT----GTTAAT-TTA-G-CTATCATTACGCGACTTGCGTTATAGATTA-TCGCGGTTGTCGCATAT-----------TGACATAGGAATTG---AC--TT-------AAAT----------T----TCT------ATTATCGAGTAAAGAATA------TG---------------------TA--CATAGACAATA-ATTACTACAAACTTCATTAATagtaaa
gi|6 : CTAAAAC-AT-GCT-TAAA---A-TGA-CAAAATA------TA-------CT-ATT--A-GTATTTCAGTACATTGCC-TTACCTCAATATGTATCATTTGATCATTT--TAAGCG-------CTTTG-------------CAGTTCATTT--GAAA-AA-TACAGATAAACAGCGATGTTCAGA-GCAATTATTCTACTAGCGCT---T-GTACT-AAAGTAGTACGTGTCTAGCATTACAAACTA------GTTGTCGTGTAT-----------TGTT-TATGAATTGAATAT--TT-------AGTTACACAGTTGGT----ACA------ATTGTCGACTATACAATA------TG--T-A--TATACTCGTATA-CAA--TATCTACAATA---TAGTACAAAATGTATTTTTC-A--AAAAAA
gi|7 : actA----CGCG------CTGAAAGTAAAGTCTTACTTGTTACTGAAAA-ACTGCT-GACAGGTACTGAATAAAATA------TATATCGTACTTATA--A-GTATTGCAGGACATTGTCAGTAATTCGGAAGGAATAATAAGACCATTT-TTCAGCG-------CGTTT-------------CAGACCATTT--GAAAGAA-TACAGATAAAAAGCGCGATTCAGAGGTATCTGTTCCAATAGCGGT---T-GTATT-ATAGCAGTACGTGACTCGCGTT--------------GTTGTCGAGTAT-----------TGTT-TAAGAATAG---AA--TT-------AGTT----------TC---AAA------ATTGT------TACAAT-------TG--TCGGCTATG---GAATATATACGTGTGGACAATA-GTTaata
gi|8 : CTGAAAAC-CGCCGAAAGTGA--CAATATA----CGCG------CT-----TAAAGGCCGAATCCATACTATAAA-AC-GCT-GACACGTGCTGAATA------------------------TA--A-GTATTTCAGTA-----------TCTTAAATGGTATTATAAGACCATTTTGTCAGTGTGTTTTGCGTTT-------------CAGTCCATTT--GGAA-AAATACAGGTA--------------GA-GTCTCTATTCCACTAGTTGT---T-TTA-G-CTATCATTATGCGACTTGCGTTATAGCTTA-TCACGGTTGTCGCATAT------------GTCGTA---------------T-------A--T----------T----ACT------ATGGTCGAGT------------------------ATA---GAATGTTTA--TATAGACAATA-GTTACTACAAACTTCATTGATT-A--AA
gi|9 : aTACTATAAT-AC-GCT-GACACGTTCTGAATAAAATA------TA-------CTTATA--A-GTATTTAAGTACATTGTCATTATCTTTAATGGTAGTATGAGACCATTT-GTCAGCG-------CGTTC-------------CAGTCCATT----------------GTAAATAGTGCAATTCAGT-GTCTCTGTTCCACTAGTTGT---T-TCA-G-CTATCATTACGCGACTTGCTTTATATATTA-TCAGGGTTGTCGCATAT-----------TGACATTGGAATTG---AC--TT-------AAAT----------T----ACT------GTTAT--AGTACAGAATA------TG---------------------TA--TATAGATAATG-ATTACTACAAACTTCATTAAAT-AATAAGAAAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGTTTCAATTTCCTATTCGCATAATGCAGATAATAAATATAGGAATTAAAAAATATATTATAAGGATATTTTCAAGTATAAGAACA
Unaligned ( gi|22 ): GTTCCATATATATATATACTATATATATAGGGA
Alignments
lowQualScore : 111111 1111111 11 1111111 1111111111111 111 11111 11111111111 22222222222222222222222222222222222 99999999999999999999999999999999999999
lowQualScore : 7 44 999999 666666 77777 4 5 77 2 5 2 4 888888 0000000 44 3 1 1 00 0000000 8888888888888 555 6 3 0 2 1 0 555 2 222 3 0 33 4 33333 44444444444 333 7 7777 44 88888888888888888888888888888888888 0 3 33333333333333333333333333333333333333 1 0 88 4 99
lowQualScore : . .. ...... ...... ..... . . .. . . . . ...... ....... .. . . . .. ....... ............. ... . . . . . . ... . ... . . .. . ..... ........... ... . .... .. ................................... . . ...................................... . . .. . ..
lowQualScore : 3 66 777777 222222 77777 0 9 55 9 7 9 0 888888 0000000 22 1 0 6 66 8888888 3333333333333 666 7 3 7 9 0 1 000 9 111 5 8 11 8 33333 66666666666 555 8 5555 22 22222222222222222222222222222222222 2 8 33333333333333333333333333333333333333 6 3 33 0 55
consensus : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AAGAAA
Reference ( family-3084 ) : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AAGAAA
gi|1 : ------CT-----AAAAGCCTTACTCGGTATTGAAAA-TC-GCT-TACATTTACTGATTAAAATA------TA-------CTTATATAACGTATTTCAGTACATTGTCAGTACCTCAAACTGTACTTTAAGACCATTT-TTCAGAG-------CATTTTAGTTCGGTCTTTCAGTCCAATT--GAAAGAA-TACAAATAAATATTGCAATTCAAA-GCTTCTGTTCCGCTAGCGGT---T-TAA-T-ATATCATTACCTGAATCGCGTAATAGATTA-AAATAGTTGTCACATAT-----------TAACATATGTATTA---AC--TTTATTGCAAAAT----------T----CCT------ATTACCGAGTATAAGCTA------TT--C-A--TAT------AT---------TAAACAATATTTTAATACACACTTCATTAATCAA--AAGAAA
gi|10 : cttatgtaacacagatatacaataggaactatgagaaaaaaactacaaaATA------TA-------CTTATA--C-GTATTTCAATACATTGTTAATACCTCTAAAGGTATTATAAGAACGTCT--TTAGCG-------CTTTG-------------CATTCCATTT---GAA-AA-TACAGGTTAATAGCGCAGTTCAGC-GCATCTGTTCGACTAGCGAT---TGTTT-T-ATACCAATACGTTACTCGTGTTAGAAGCTAGTTATAGTTATTGTGTAT-----------TGTTCTA-GAATTA---AT--TT-------AGTT----------T------C------AAAATTG-GTACAC--T-------TG--TCGGCTATA---GAATATCCAATCGTAGACAATT-GTTAACACAAACTTTATAAATC-A--AAAAt
gi|11 : TGAAAAC-CGCTGAAAGTGT--CACTATG----ATTG------CT-----TAAAG-----------ACTAAAAATAT-GCTTGACGTGTACAGAACAAAATA------TA-------CCCATA--A-GTATTTCAGTACATTATCAGCAGTCTAATGGGTATTATATGACCGTTT-ATTAGCG-------CGTTC-------------CTGTC-----------------CAGGTAAATGGTGCATTTCAAA-GTTTCTGTTCCACTAGTGGT---T-TTA-T-ATATCACTTCGTGATTTACGTtg
gi|12 : tCTCTGAAAAC-CACTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGACTGAATCCATACTAAAAA-AT-GCT-GACACA-ACTGGATAAAATATACATGTA-------CTTATA--A-GTATTTCAGTACATTGTCAATATCTTAAAGGG---TATAAGACTATTT-GTCAGCG-------CGTTT-------------CATTCCATTT--GGAA-AA-TACAGGTAAATAGTGCAATTC--A-GTCTCTGTTCTA
gi|13 : aaCAGGTAAACAGCGCAGTTGAGA-GCATCTGTTCAACTAGCGGT---T-GTATT-ATATCA-GACGTTTCTC-------AGGTT-------GTTGTCGCGTATAATTTAACAAGTGATACAGT--TTC---ACAATT-------AA------------T----ACA------ATTATCTGATATAGAATATATATTTG--T-G--GATA---AAATGTTTtaa
gi|14 : aacagtTATCATTACACAACTTGTGTTATAGAT-G-TCATGGTTGTCGTATAT-----------TGACATAGGAATTG---AC--TA-------AAAC----------T----ACT------ATTATCGAGTATA---------------------------GAATTTTTA--TATAGACAATA-ATTACTA-AAACTTCATTAATT-A--AAGAAAtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|15 : tccaacgcgttactgtagcTAGCTGT---T-TTA-T-ATATCATTACGCGACTTGCGTTACATATTA-TCACGGTAGTCGCAC-T-----------T--------AATAG---AC--TT-------AAG--------------------------TTATCG--------ATA------TG-----------------------------GACAATA-ATTACTACAAACTGCTTTCATT-AT-GAGAAA
gi|16 : aaTGAAATG-CGCTGAAAGCAG--TTATTCA----C-TGAAACATCT-----TAAAGGCT--------ATTAAAAA--C-GCT-TACAAGTACTGAATATAATA------TA-------CTTACA--A-
gi|17 : aggaaccaCTGAAGCT-AGCTGAAAAAAAAACAATATAAAATTATGGA----CA-----TAAAGTCTTAATTAGTACTAGAAA-AC-GCT-GACATGTACTGACTAActgt
gi|18 : aggaacgAGGTAATCAGCGCAGTTCAGT-GCATCTGGGTCACTAGCGGT---T-GTACT-ATATAAATACGCGGATCGCGTTATA-ACTAGTAATAGTTATCGCGTt
gi|2 : CTCTGAAAAG-CTCTGGAAATCA--CATTATG----CATG------CT-----TAAAGTCAAAATCGCTATTGAAAA-AC-GCT-GACATGTACTGAATAAAATA------TG-------TTTATA--A-GTATTTAAGTACATTGTCAGCATCTTAAAAGGTATCATAAGGTCAATT-TTCAGCG-------CGTTT-------------CAGTCCATTTAAAAAA-AA-TACAGGTAGACAGCGCAATGCATA-GCATTTGTTTTACTAGCGGT---T-GTA-TAATGCCAGCACGTGACTCCTGTT-------------GCTTG-CGTGTAT-----------TGTTA-ATGAATTG---AT--TT-------AGTT----------TTAAAACTGGTACAGTTGTCGGCTATAGAATA------T-----------------ACACTTG--T-T-GACAATA-TTAAACACTAACTGTATAAATT-A--AAAA
gi|20 : aaCTCTGAAAAG-CACTCAAAGTTA--CCATGTA----AATG------CT-----TAACGTCTAAATCtaataatataataaattgccaga
gi|21 : taggaaAACACGCTTAAAATAA--CAAAATA-----ATGA-----CT-----TAAAGTCTTAATCGGTACTGACAA-AC-GCT-GATATGTAatataccgatttaaaaatac
gi|23 : tatgcCTCTGAAAAC-CTCTGAAAGTGG--CAATAa
gi|3 : aggaaCTCTGTGAAC-CACTGAATGTGG--CAATATA----CGTG------AT-----TAAAGACTGAATCGGTACTTAAAA-AC-ACT-GACATGTACTGAATAAAATT------TA-------TTTATT--A-GTATTTCAGTACTTTCTCAGTGCCTTAAAGGGTATTATAAGACCATTT-ATCAGCG-------CGTTT-------------CAGTCCATTT--AGAA-AA-TACAGGCAAATTGTGCAATTCAGA-GTTTCTGTTCCACTAGCAGT---T-TTA-T-ATATCATTACTCGACTTGCGTTATATATTA-TCACGGTTGTCGCATAT-----------TGGCATAAGAATTT---AC--TT-------AACT----------T----ACT------GTTTTTGAGTATATAATA------TGTAT-G--TATA---AAATATTTA--TATAGACAATA-ATAACTACAAAATGCATCAATT-G--TAGAAA
gi|4 : AAACACGCTGAAAGTGA--CAATATA----TGTG------CT-----TAAAGACTGAATCCATACTATCAA-AC-GCT-GACACGTACTAAATACAATA------TA-------CCAATA--A-GTATTTTAATACATTGTCAGTAGCTTAAAGGGTAGTGCAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTTCATTT--GG-A-AA-TACAGGTAAATAGTGCAATTCAGA-GTCTATGTTCCACTAGTTGT---T-TCA-G-CTATCATTACGT-------------GATTA-TCAAGGTTGTGGGATAT-----------TGACATAGAAATT----AC--TT-------AAAA----------A----ACT------ATTACCGGGTATAC---------------------------ACTATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AA
gi|5 : GA--CAATATA----CGTG------CA-----TAAAGGCTGAATCCATACTAAAAA-ACCACT-GATACGTACTCAATCAAATA------TA-------ATTATA--A-GTATTTCCGTATATTGTCAGTAGCTTAAAGGTTATTATTAGATCATTT-GTCAACG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TAGAGGTAAATAGTGCATTTAAGA-GTCTTAAATCAACT----GTTAAT-TTA-G-CTATCATTACGCGACTTGCGTTATAGATTA-TCGCGGTTGTCGCATAT-----------TGACATAGGAATTG---AC--TT-------AAAT----------T----TCT------ATTATCGAGTAAAGAATA------TG---------------------TA--CATAGACAATA-ATTACTACAAACTTCATTAATagtaaa
gi|6 : CTAAAAC-AT-GCT-TAAA---A-TGA-CAAAATA------TA-------CT-ATT--A-GTATTTCAGTACATTGCC-TTACCTCAATATGTATCATTTGATCATTT--TAAGCG-------CTTTG-------------CAGTTCATTT--GAAA-AA-TACAGATAAACAGCGATGTTCAGA-GCAATTATTCTACTAGCGCT---T-GTACT-AAAGTAGTACGTGTCTAGCATTACAAACTA------GTTGTCGTGTAT-----------TGTT-TATGAATTGAATAT--TT-------AGTTACACAGTTGGT----ACA------ATTGTCGACTATACAATA------TG--T-A--TATACTCGTATA-CAA--TATCTACAATA---TAGTACAAAATGTATTTTTC-A--AAAAAA
gi|7 : actA----CGCG------CTGAAAGTAAAGTCTTACTTGTTACTGAAAA-ACTGCT-GACAGGTACTGAATAAAATA------TATATCGTACTTATA--A-GTATTGCAGGACATTGTCAGTAATTCGGAAGGAATAATAAGACCATTT-TTCAGCG-------CGTTT-------------CAGACCATTT--GAAAGAA-TACAGATAAAAAGCGCGATTCAGAGGTATCTGTTCCAATAGCGGT---T-GTATT-ATAGCAGTACGTGACTCGCGTT--------------GTTGTCGAGTAT-----------TGTT-TAAGAATAG---AA--TT-------AGTT----------TC---AAA------ATTGT------TACAAT-------TG--TCGGCTATG---GAATATATACGTGTGGACAATA-GTTaata
gi|8 : CTGAAAAC-CGCCGAAAGTGA--CAATATA----CGCG------CT-----TAAAGGCCGAATCCATACTATAAA-AC-GCT-GACACGTGCTGAATA------------------------TA--A-GTATTTCAGTA-----------TCTTAAATGGTATTATAAGACCATTTTGTCAGTGTGTTTTGCGTTT-------------CAGTCCATTT--GGAA-AAATACAGGTA--------------GA-GTCTCTATTCCACTAGTTGT---T-TTA-G-CTATCATTATGCGACTTGCGTTATAGCTTA-TCACGGTTGTCGCATAT------------GTCGTA---------------T-------A--T----------T----ACT------ATGGTCGAGT------------------------ATA---GAATGTTTA--TATAGACAATA-GTTACTACAAACTTCATTGATT-A--AA
gi|9 : aTACTATAAT-AC-GCT-GACACGTTCTGAATAAAATA------TA-------CTTATA--A-GTATTTAAGTACATTGTCATTATCTTTAATGGTAGTATGAGACCATTT-GTCAGCG-------CGTTC-------------CAGTCCATT----------------GTAAATAGTGCAATTCAGT-GTCTCTGTTCCACTAGTTGT---T-TCA-G-CTATCATTACGCGACTTGCTTTATATATTA-TCAGGGTTGTCGCATAT-----------TGACATTGGAATTG---AC--TT-------AAAT----------T----ACT------GTTAT--AGTACAGAATA------TG---------------------TA--TATAGATAATG-ATTACTACAAACTTCATTAAAT-AATAAGAAAaga
blockSeqs : A AA AAATTA AAACAT GAAAG A G CA T C T T TACATG TATCGTA . . C A TG TGTTTTG . AAA G A G A TAA G TT A AG A GTTAT AATTTAACAAG TTC G GAAT AA AGTTTTAAAACTGGTACA G CAATTGTCGGCTATGGAATATATACG G G . AT
blockSeqs : A . CG GA . G T AG . T . C . . . . G G A . . G . . . T . . CT C AT G GTAAT . ATA G A . AGTTACACAGTTGGTACA A CTTGTCGGCTATAGAATATCCAAT A A . T
blockSeqs : . . CA A . T A GC . . . A . . . . T G G . . A . . . C . . TA T AC G TCAT . ACA T C . AGTTTCAAA G TAATATGTATGTATAAAATATTTA A A . .
blockSeqs : . . AA . . T A GG . . . T . . . . T A T . . G . . . A . . CT T AT T TCAC . TTA A G . AAACTACT A CAATATGTATATACTCGTATACAA A T . .
blockSeqs : . . CG . . T T GG . . . T . . . . C G A . . G . . . A . . TT A AT T TCAC . GCA G G . AACTTACT G GAATATACACTTG A A . .
blockSeqs : . . TG . . T G CA . . . T . . . . G G G . . G . . . A . . T G AT G TCAA . ACA G G . AAAAAACT A ATAGAATGTTTA A G . .
blockSeqs : . . CG . . A G CA . . . T . . . . G G G . . G . . . T . . T T AC G TCGC . ACA T T . AAATTTCT A GAATTTTTA G A . .
blockSeqs : . . CG . . A G GT . . . C . . . . C A T . . G . . . C . . T T AT A TCAC . TCG A G . AAATTACT A CACTATTTA A G . .
blockSeqs : . . CG . . G T CA . . . C . . . . A A G . . . . . . C . . T T AT G TCAG . ACA G G . AGTTTC A GAATATGTA A G . .
blockSeqs : . . C . . T G . . . . G . . . . T T . . . . . . . A . . G G . T . . TT . G . AATACA . GAATATGTA . A
blockSeqs : . A . . G . . . . . C . . . . T T . . . . . . . A . . G G . . . . TT . . . ATTACT . ATATG . .
blockSeqs : . . . . . . . C . . . . . C . . G T . . . . . . . . AAG .
blockSeqs : . . . . . C . . G T . . .
blockSeqs : .
blockSeqCons : ** ************* AANTTACN*************************** GAATATNTA***************************** G*
originalCons : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AANT----------T----ACT------ATTATCGAGTATANAATA------TG--T-G--TATA---GAATATTTA--TATAGACAATA-GTTACTACAAACTTCATTAATT-A--AAGAAA
finalCons : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGT---T-TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TTAANTTACN---------------------------ATTATCGAGTATAGAATATNTA-----------------------------TATAGACAATAG-TTACTACAAACTTCATTAATT-A--AAGAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGTTTCAATTTCCTATTCGCATAATGCAGATAATAAATATAGGAATTAAAAAATATATTATAAGGATATTTTCAAGTATAAGAACA
Unaligned ( gi|22 ): GTTCCATATATATATATACTATATATATAGGGA
Alignments
lowQualScore : 111111 1111111 11 1111111 1111111111111 111 11111 11111111111 5555555555555555555555555555555 111111111111111 11 1111111
lowQualScore : 7 44 999999 666666 77777 4 5 77 2 5 2 4 888888 0000000 44 3 1 1 00 0000000 8888888888888 555 6 3 0 2 1 0 777 222 3 0 33 4 33333 44444444444 333 7 7777 44 9999999999999999999999999999999 2 11 999999999999999 2 22 555 555 555 66 1111111 4 99
lowQualScore : . .. ...... ...... ..... . . .. . . . . ...... ....... .. . . . .. ....... ............. ... . . . . . . ... ... . . .. . ..... ........... ... . .... .. ............................... . .. ............... . .. ... ... ... .. ....... . ..
lowQualScore : 3 66 777777 222222 77777 0 9 55 9 7 9 0 888888 0000000 22 1 0 6 66 8888888 3333333333333 666 7 3 7 9 0 1 999 111 5 8 11 8 33333 66666666666 555 8 5555 22 1111111111111111111111111111111 1 44 222222222222222 1 77 888 888 888 22 8888888 0 55
consensus : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGTT---TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AA----------NT----------TACTATTGTCGAGTATAGAATA---------------TNTA--TA---TA---G---ACAATA-NTTAC-------TACAAACTTCATTAATT-A--AAGAAA
Reference ( family-3084 ) : CTCTGAAAAC-CGCTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGNCTGAATCGGTACTAAAAA-AC-GCT-GACACGTACTGAATAAAATA------TA-------CTTATA--A-GTATTTCAGTACATTGTCAGTANCTTAAAGGGTATTATAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TACAGGTAAATAGCGCAATTCAGA-GCNTCTGTTCCACTAGCGGTT---TTA-T-ATATCATTACGCGACTCGCGTTATAGATTA-TCACGGTTGTCGCGTAT-----------TGNCATAGGAATTG---AC--TT-------AA----------NT----------TACNATTATCGAGTATAGAATA---------------TNTA--TA---TA---G---ACAATA-GTTAC-------TACAAACTTCATTAATT-A--AAGAAA
gi|1 : ------CT-----AAAAGCCTTACTCGGTATTGAAAA-TC-GCT-TACATTTACTGATTAAAATA------TA-------CTTATATAACGTATTTCAGTACATTGTCAGTACCTCAAACTGTACTTTAAGACCATTT-TTCAGAG-------CATTTTAGTTCGGTCTTTCAGTCCAATT--GAAAGAA-TACAAATAAATATTGCAATTCAAA-GCTTCTGTTCCGCTAGCGGTT---TAA-T-ATATCATTACCTGAATCGCGTAATAGATTA-AAATAGTTGTCACATAT-----------TAACATATGTATTA---AC--TTTATTGCAAA----------AT----------TCCTATTACCGAGTATAAGCTA---------------TTCA--TATATTA---A---ACAATATTTTAA-------TACACACTTCATTAATCAA--AAGAAA
gi|10 : cttatgtaacacagatatacaataggaactatgagaaaaaaactacaaaATA------TA-------CTTATA--C-GTATTTCAATACATTGTTAATACCTCTAAAGGTATTATAAGAACGTCT--TTAGCG-------CTTTG-------------CATTCCATTT---GAA-AA-TACAGGTTAATAGCGCAGTTCAGC-GCATCTGTTCGACTAGCGATTG--TTT-T-ATACCAATACGTTACTCGTGTTAGAAGCTAGTTATAGTTATTGTGTAT-----------TGTTCTA-GAATTA---AT--TT-------AG----------TTTCAAAATTGGTACACTTGTCGGCTATAGAATA---------------TCCAATCG---TA---G---ACAATT-GTTAA-------CACAAACTTTATAAATC-A--AAAAt
gi|11 : TGAAAAC-CGCTGAAAGTGT--CACTATG----ATTG------CT-----TAAAG-----------ACTAAAAATAT-GCTTGACGTGTACAGAACAAAATA------TA-------CCCATA--A-GTATTTCAGTACATTATCAGCAGTCTAATGGGTATTATATGACCGTTT-ATTAGCG-------CGTTC-------------CTGTC-----------------CAGGTAAATGGTGCATTTCAAA-GTTTCTGTTCCACTAGTGGTT---TTA-T-ATATCACTTCGTGATTTACGTtg
gi|12 : tCTCTGAAAAC-CACTGAAAGTGA--CAATATA----CGTG------CT-----TAAAGACTGAATCCATACTAAAAA-AT-GCT-GACACA-ACTGGATAAAATATACATGTA-------CTTATA--A-GTATTTCAGTACATTGTCAATATCTTAAAGGG---TATAAGACTATTT-GTCAGCG-------CGTTT-------------CATTCCATTT--GGAA-AA-TACAGGTAAATAGTGCAATTC--A-GTCTCTGTTCTA
gi|13 : aaCAGGTAAACAGCGCAGTTGAGA-GCATCTGTTCAACTAGCGGTT---GTATT-ATATCA-GACGTTTCTC-------AGGTT-------GTTGTCGCGTATAATTTAACAAGTGATACAGT--TTC---ACAATT-------AA----------------------TACAATTATCTGATATAGAATA---------------TATA--Ttaa
gi|14 : aacagtTATCATTACACAACTTGTGTTATAGAT-G-TCATGGTTGTCGTATAT-----------TGACATAGGAATTG---AC--TA-------AA----------AC----------TACTATTATCGAGTATAGAATT---------------TTTA--TA---TA---G---ACAATA-ATTAC-------TA-AAACTTCATTAATT-A--AAGAAAttgtggataaaatgttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|15 : tccaacgcgttactgtagcTAGCTGTT---TTA-T-ATATCATTACGCGACTTGCGTTACATATTA-TCACGGTAGTCGCAC-T-----------T--------AATAG---AC--TT-------AA----------G----------------TTATCG-----------------------------A--TA---TG---G---ACAATA-ATTAC-------TACAAACTGCTTTCATT-AT-GAGAAA
gi|16 : aaTGAAATG-CGCTGAAAGCAG--TTATTCA----C-TGAAACATCT-----TAAAGGCT--------ATTAAAAA--C-GCT-TACAAGTACTGAATATAATA------TA-------CTTACA--A-
gi|17 : aggaaccaCTGAAGCT-AGCTGAAAAAAAAACAATATAAAATTATGGA----CA-----TAAAGTCTTAATTAGTACTAGAAA-AC-GCT-GACATGTACTGACTAActgt
gi|18 : aggaacgAGGTAATCAGCGCAGTTCAGT-GCATCTGGGTCACTAGCGGTT---GTACT-ATATAAATACGCGGATCGCGTTATA-ACTAGTAATAGTTATCGCGTt
gi|2 : CTCTGAAAAG-CTCTGGAAATCA--CATTATG----CATG------CT-----TAAAGTCAAAATCGCTATTGAAAA-AC-GCT-GACATGTACTGAATAAAATA------TG-------TTTATA--A-GTATTTAAGTACATTGTCAGCATCTTAAAAGGTATCATAAGGTCAATT-TTCAGCG-------CGTTT-------------CAGTCCATTTAAAAAA-AA-TACAGGTAGACAGCGCAATGCATA-GCATTTGTTTTACTAGCGGTT---GTA-TAATGCCAGCACGTGACTCCTGTT-------------GCTTG-CGTGTAT-----------TGTTA-ATGAATTG---AT--TT-------AG----------TTTTAAAACTGGTACAGTTGTCGGCTATAGAATA---------------TACACTTG---TT---G---ACAATA-TTAAA-------CACTAACTGTATAAATT-A--AAAA
gi|20 : aaCTCTGAAAAG-CACTCAAAGTTA--CCATGTA----AATG------CT-----TAACGTCTAAATCtaataatataataaattgccaga
gi|21 : taggaaAACACGCTTAAAATAA--CAAAATA-----ATGA-----CT-----TAAAGTCTTAATCGGTACTGACAA-AC-GCT-GATATGTAatataccgatttaaaaatac
gi|23 : tatgcCTCTGAAAAC-CTCTGAAAGTGG--CAATAa
gi|3 : aggaaCTCTGTGAAC-CACTGAATGTGG--CAATATA----CGTG------AT-----TAAAGACTGAATCGGTACTTAAAA-AC-ACT-GACATGTACTGAATAAAATT------TA-------TTTATT--A-GTATTTCAGTACTTTCTCAGTGCCTTAAAGGGTATTATAAGACCATTT-ATCAGCG-------CGTTT-------------CAGTCCATTT--AGAA-AA-TACAGGCAAATTGTGCAATTCAGA-GTTTCTGTTCCACTAGCAGTT---TTA-T-ATATCATTACTCGACTTGCGTTATATATTA-TCACGGTTGTCGCATAT-----------TGGCATAAGAATTT---AC--TT-------AA----------CT----------TACTGTTTTTGAGTATATAATATGTATGTATAAAATATTTA--TA---TA---G---ACAATA-ATAAC-------TACAAAATGCATCAATT-G--TAGAAA
gi|4 : AAACACGCTGAAAGTGA--CAATATA----TGTG------CT-----TAAAGACTGAATCCATACTATCAA-AC-GCT-GACACGTACTAAATACAATA------TA-------CCAATA--A-GTATTTTAATACATTGTCAGTAGCTTAAAGGGTAGTGCAAGACCATTT-GTCAGCG-------CGTTT-------------CAGTTCATTT--GG-A-AA-TACAGGTAAATAGTGCAATTCAGA-GTCTATGTTCCACTAGTTGTT---TCA-G-CTATCATTACGT-------------GATTA-TCAAGGTTGTGGGATAT-----------TGACATAGAAATT----AC--TT-------AA----------AA----------AACTATTACCGGGTATACACTA---------------TTTA--TA---TA---G---ACAATA-GTTAC-------TACAAACTTCATTAATT-A--AA
gi|5 : GA--CAATATA----CGTG------CA-----TAAAGGCTGAATCCATACTAAAAA-ACCACT-GATACGTACTCAATCAAATA------TA-------ATTATA--A-GTATTTCCGTATATTGTCAGTAGCTTAAAGGTTATTATTAGATCATTT-GTCAACG-------CGTTT-------------CAGTCCATTT--GGAA-AA-TAGAGGTAAATAGTGCATTTAAGA-GTCTTAAATCAACT----GTTAATTTA-G-CTATCATTACGCGACTTGCGTTATAGATTA-TCGCGGTTGTCGCATAT-----------TGACATAGGAATTG---AC--TT-------AA----------AT----------TTCTATTATCGAGTAAAGAATA---------------TGTA--CA---TA---G---ACAATA-ATTAC-------TACAAACTTCATTAATagtaaa
gi|6 : CTAAAAC-AT-GCT-TAAA---A-TGA-CAAAATA------TA-------CT-ATT--A-GTATTTCAGTACATTGCC-TTACCTCAATATGTATCATTTGATCATTT--TAAGCG-------CTTTG-------------CAGTTCATTT--GAAA-AA-TACAGATAAACAGCGATGTTCAGA-GCAATTATTCTACTAGCGCTT---GTACT-AAAGTAGTACGTGTCTAGCATTACAAACTA------GTTGTCGTGTAT-----------TGTT-TATGAATTGAATAT--TT-------AG----------TTACACAGTTGGTACAATTGTCGACTATACAATA---------------TGTA--TA---TACTCGTATACAATA-TCTACAATATAGTACAAAATGTATTTTTC-A--AAAAAA
gi|7 : actA----CGCG------CTGAAAGTAAAGTCTTACTTGTTACTGAAAA-ACTGCT-GACAGGTACTGAATAAAATA------TATATCGTACTTATA--A-GTATTGCAGGACATTGTCAGTAATTCGGAAGGAATAATAAGACCATTT-TTCAGCG-------CGTTT-------------CAGACCATTT--GAAAGAA-TACAGATAAAAAGCGCGATTCAGAGGTATCTGTTCCAATAGCGGTT---GTATT-ATAGCAGTACGTGACTCGCGTT--------------GTTGTCGAGTAT-----------TGTT-TAAGAATAG---AA--TT-------AGTTTCAAAATTGT----------TACAATTGTCGGCTATGGAATA---------------TATACGTG---TG---G---ACAATA-GTTaata
gi|8 : CTGAAAAC-CGCCGAAAGTGA--CAATATA----CGCG------CT-----TAAAGGCCGAATCCATACTATAAA-AC-GCT-GACACGTGCTGAATA------------------------TA--A-GTATTTCAGTA-----------TCTTAAATGGTATTATAAGACCATTTTGTCAGTGTGTTTTGCGTTT-------------CAGTCCATTT--GGAA-AAATACAGGTA--------------GA-GTCTCTATTCCACTAGTTGTT---TTA-G-CTATCATTATGCGACTTGCGTTATAGCTTA-TCACGGTTGTCGCATA------------TGTCGTA---------------T-------A------------T----------TACTATGGTCGAGTATAGAATG---------------TTTA--TA---TA---G---ACAATA-GTTAC-------TACAAACTTCATTGATT-A--AA
gi|9 : aTACTATAAT-AC-GCT-GACACGTTCTGAATAAAATA------TA-------CTTATA--A-GTATTTAAGTACATTGTCATTATCTTTAATGGTAGTATGAGACCATTT-GTCAGCG-------CGTTC-------------CAGTCCATT----------------GTAAATAGTGCAATTCAGT-GTCTCTGTTCCACTAGTTGTT---TCA-G-CTATCATTACGCGACTTGCTTTATATATTA-TCAGGGTTGTCGCATAT-----------TGACATTGGAATTG---AC--TT-------AA----------AT----------TACTGTTAT--AGTACAGAATA---------------TGTA--TA---TA---G---ATAATG-ATTAC-------TACAAACTTCATTAAAT-AATAAGAAAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGTTTCAATTTCCTATTCGCATAATGCAGATAATAAATATAGGAATTAAAAAATATATTATAAGGATATTTTCAAGTATAAGAACA
Unaligned ( gi|22 ): GTTCCATATATATATATACTATATATATAGGGA