lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555 11 1 22 11 222 1 1 55555555555 11 222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1111 33333333 22222 11 1 666666666666 55555555
lowQualScore : 00000000 77 3 77 0 99 7 0 555 0 3 8 2 33333333333 33 1 2 000000 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 7 44 77 5 5555 1 6 0 00 77 8888 33333333 0 0 5 55555 1 55 3 6 3 000000000000 11111111
lowQualScore : ........ .. . .. . .. . . ... . . . . ........... .. . . ...... .............................................................................................. . . .. .. . .... . . . .. .. .... ........ . . . ..... . .. . . . ............ ........
lowQualScore : 33333333 33 3 00 7 77 3 7 000 7 3 3 0 00000000000 00 0 8 888888 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 8 44 99 7 1111 1 8 5 99 99 3333 77777777 7 3 7 00000 5 55 5 0 3 777777777777 00000000
consensus : NNTATATTCCCT-AG-CA-GAGNAGGCTAAG--GTGATTTNATTGAAACCTATAAACTGACGGCCAATAAATAC-GATATANATCGT---AT----TTCGTTCTCTCCGATATTAGTCAT----ACACGTGGACACG-------AAATGAAACTGTT--TAA-AC-CAACTC-TCC---ACAAAANAC-----TAACNG--TAAA--GAT---------CT----TCGCGTCATCAATAGTCGGAATGACCTCCCC--CGGGGT-GTTATCG---CGTCCGATTCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-T--GAAATTA----TGAAAAA-TGGGACGCTAGAGGCNATGCCTAAATCTT-AAATTC--------GCATAAAA----CG--TAAATGTAAATGTG
Reference ( gi|2 ) : TGTATATTCCCTAAGCCAAGAGATGGCTTAGGGGTGATCTTCTTGAAACCTACAAACTGATGATCAACAAATAC-AATAAACATCGT---AT----TTTGTCATTTCTGATACTAGTCGT----ACACGTGGAT--G-------AAATGAAGCAGTT--TAA-AT-TAACTC-TCA---ATAAAAAAC-----TAACAG--TAAA--GAT---------CA----TCGCGTCATCAATAATTGGAATGACCTTCCC--CAGGAT-GTTATCA---CATCAGATTCAATGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-T--GAATTTA----TGAAAAA-TGAGTCACTAGAGGTTATACCTAAATTTT-AAACTC--------CCATAAAA----TG--TAAATGTAAATATG
gi|1 : TATATTCCCTGAGCCA-GAGGAGGTTAAACTGTGATCTCATTAAAACCTGTAAACTGATGGCCAATAAATAC-AATGTAGATCGTGAAATATTCTTCGTTCTCTCCGATATAAGTCAT----ACACGTGGATACG-------ACATGAAACTGTT--TAA-AC-CAACTC-TTC---ATAGAATACATCTTTGAGGG--AAAA-----------------------CGTTTTCAACATTCG------TCTTATCAACAGTGT-GGTAGTG---CATTAAATAAAATGGACACCTT------TAGACTAATCTGG--CACGTGATAT--AAAGT------TGAAAGA-TCAGACACTAGAGGCATTGCCGAAATCTT-AAATTC--------ACATAAAACT--TG--TAAATGTAAAT
gi|4 : tatactggatagtcttaaaacttttcataaacttatgttaaacccattagggacactgtgctcagagtttatgccagtattatgttaagatcttgaaactttagaaaaagtccaaaggtctcgtctcatacctgagttaaacgcactttcataccacaagcatcTATATTCCC------ACGAGCCGGCCCAGAGGAGGTTGAGTTGAAACCTATGAAATGACAACCAATAAACACTGATAAATACAAT---AT----Tgc
gi|3 : acccgttattgaatacagagttggtgctcgtattctgtgagagatcttgaaactttggagaaagtgcaactgtatgccactcgtttcataccttagctcaaaacactttcgtactacgagcgacgacacacattaaatcATATTCCCTTAGATA-GAGAAGACTAAG---TGATTTTAT-GAAATCTACAAACTGAT---CAACAAATAC-ATTATAAATC-T----T----TTTGTTCTCTCTGATATTAGTTGG----ACACCTACCT--GAACACAAAAATGAAGCTGTC--CAACA---AACTC-TAC---ACAAATGAC-----TAACAgccgtgaaataatctttgtgctt
gi|6 : tatattgattgacagttttcaaattgtttataacacctatatgtgagacccattgtggaatactgcattcagagtatcatgtgaaagatattgagactttagaaagggtccagaggtatgtctacaagcactaaattcTTATTTCTGATGCTTATCAA----ACACATGGACAGG-------AAAGGAAACTGTTCATAA-ATGT--CTC-TCATTTAGGAAATAC-----T---------------T---------CT----T--TGTC------AGTTGGAGTGTCCTCCCA--CAGGGTCACTATCATTGCATTCAATACCATGGATACTGTTAAACAGAGACTAAATATT--AAGTGGAT-TTAGAA--CA----TGAAACA-Tttgagagaaaactttttcgaaatatttag
gi|8 : ACATTAGTCATGAATACATGTTGACACG-------AAATGAAACTGTT--TAA-AC-CAACTCGTC----ATAAGGAA------GAACTG--T------TT---------TT----TCTTGTTATCAACAGTCTGAAT---CGTCAC--CAGGGT-GTTATTG---CTTCTGGATCAGTGG
gi|5 : TATTAGTCAT----ACACGTGGACACG-------AAATGA-----TT--CAA-A----------CC---ACAAAAGAC-----TATCTT--TAAG--GATAAATTTTTTCAGCCTTCACCTTATCAATAGTTGAAATGACTTCCCA--GAGGAT-GCTACTG---CAGCTGAATCTGAGGACGTCTTCTAACACTGACTAGACCACACCACTTGAT-A--GAAACTA----TGAAAAA-TG-------GGAGGCAATGTCTAAATcctgggctcacacct
gi|7 : AACAGATTAAATGGA-----------G----TCGCGTC-TCGATAGTTGGAATGACCTCCCC--CGGGAT-ATTATCG---TGTCCAATTCAGTCAACACTTTCATACACAGA--AGACTGC--CACTGGAT-T--AAA-TTA----TCAAGAA-TGGGATGCTAGAGGATATGCCTAAATCT
gi|9 : cT---------CT----TCGCGTCATCAATAGTTTGAATGGCAATCCC--CAGGAT-GTTACCG---CGTCAGATTCAGTGGACACCTTCAAACACAGACTAGTCCGC--CGCGAGAT-T--AAAAGTA----TTAAATA-TGGGACACTAGTGGCCATGCTTTAAT
gi|17 : gTTGGAATGACCTTGCC--TGGGGT-GTTATTC---TGTCTCATGCCATCAGCACCTTCAAATAGAGAc
gi|14 : gAGGTTCAGTGGACCCCTTCAAACACCGACTA
gi|11 : gaattaatctgggtattttagtgtaCAATGAACACCTTCAAGCACAGACTAGACCAC--CATTGGAT-T--GTAATTA----CCAAAAA-TGGAT------------TGCCTAAATCTT-AAATGCGGTATTAGGTATAAAA----CGGATAAATGTGAACGTGttttcggtattgaaagtgtt
gi|10 : ACTAGACTAC--CATCGGAT-T--GAAATAAAAAATGAAAAAATGGGACACCAGAGGCTATACCTATATCTTAAAATTT--------TCATAAAAAACTTG--ACAATGTAACTATa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTATTTCTAATACATATATGAGACCAATTATGGAATACTGTGTTCAGAGTTAGTGCCCTTGTTCTGTAAAAGACATTGAGATTTTAAAAAGAGTCCAAATGTACGCCACTCGT
Unaligned ( gi|13 ): AAAGGGTCAAAAGGTAATGCCACTTGTCTCATACCTGAGCTCAAAACACTTTCATACTATGAGTGCCTTCCTATTTCTGTAATCAAAAAGTTAA
Unaligned ( gi|15 ): ATAACAAGATATACTAAATATAACCTAAAATGTATCTATGATACTGAAAAATTGCCAATAGGCTTATAATATGATA
Unaligned ( gi|16 ): CACAAAATGAAGCTGTTCCAACCAACTCTACATAAAGGAATAACACTGAGATCTTAATCTTTTAATCTTTTACAG
Alignments
lowQualScore : 5555555555 111 33333 1111 11 222222 11 11111111 1111 55555555555555555555555555555555 111111 111 1111 111 444444444 22222 11
lowQualScore : 5555555555 44 555 00000 11 3 3333 22 4 1 6 888888 33 0 2 2 44444444 99 5 0 77 1 5555 2 1 11111111111111111111111111111111 666666 222 8 2 11 3 9999 1 6 9999 66 5 3 2 0000 5 0 9 3 777 000000000 33333 33
lowQualScore : .......... .. ... ..... .. . .... .. . . . ...... .. . . . ........ .. . . .. . .... . . ................................ ...... ... . . .. . .... . . .... .. . . . .... . . . . ... ......... ..... ..
lowQualScore : 2222222222 55 000 00000 88 2 0000 00 0 0 5 222222 88 7 5 0 77777777 22 7 9 11 7 3333 7 0 11111111111111111111111111111111 000000 999 2 1 44 1 4444 7 4 4444 99 0 4 2 6666 0 7 9 0 555 555555555 88888 88
consensus : NNTATATTCCCT-A-G-CC-AGAGANGGCT--AAG--G--TGATCTCGTTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTN---CATAAAAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
Reference ( family-3065 ) : NNTATATTCCCT-A-G-C--AGAGNAGGCT--AAG--G--TGATTTNATTGAAACCTATAAACTGACGGCCAATAAATAC-GATATANATCGT-----ATT--TCGTTCTCTCCGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAACTGTTTA-AACCAACTCTC---CACAAAANAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTCGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACGCTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAATGTG
gi|1 : TATATTCCCTGA-G-CC-AGAGGAGGTT--AAACTG--TGATCTCATTAAAACCTGTAAACTGATGGCCAATAAATAC-AATGTAGATCGTGAAATATTCTTCGTTCTCTCCGATATAAGTC--AT----AC--ACGTGGATAC-GACATGAAACTGTTTA-AACCAACTCTT---CATAGAATACATCTTTGAGGGAAAACGT-------------TTTCAACATTCGTCTTATCAACAGT-------------------G----TGGTAGTGCATTAAAT----AAAATGGACACCTT------TAGACTAATCTGG--CACGTGATATAAAGT------TGAAAG-ATCAGACACTAGAGGCATTGCCGAAATCTTAAA---TTC--------ACATAAAACTTG--TA--AATGTAAATG
gi|10 : tatactggatagtcttaaaacttttcataaacttatgttaaacccattagggacactgtgctcagagtttatgccagtattatgttaagatcttgaaactttagaaaaagtccaaaggtctcgtctcatacctgagttaaacgcactttcataccacaagcatcACTAGACTAC--CATCGGAT-TGAAATAAAAAATGAAAAAATGGGACACCAGAGGCTATACCTATATCTTAAAATTTTC--------ATAAAAAAC--T--TGACAATGTAAc
gi|11 : cttatatatatCAATGAACACCTTCAAGCACAGACTAGACCAC--CATTGGAT-TGTAATTA----CCAAAA-AT-GGAT-----------TGCCTAAATCTTAAA---TGCGGTATTAGGTATAAAAC--GGATA--AATGTGAACGTGctata
gi|14 : GGG----TATTTTAGTGTAAGGT----TCAGTGGACCCCTTCAAACACCGACTAa
gi|16 : gaattaatctCAC-AAAATGAAGCTGTTCC-AACCAACTCTA---CATAAAGGAA-----TAACACT-GAGAT-------------CTTttttcggtattgaaagtgtt
gi|17 : GTTGGAATGACCTTGCCTGGGG----TGTTATTCTGTCTCATGCCATCAG----CACCTTCAAATAGAGAaatcttttaatcttttacag
gi|2 : TATATTCCCT-AAG-CCAAGAGATGGCT--TAG--GGGTGATCTTCTTGAAACCTACAAACTGATGATCAACAAATAC-AATAAACATCGT-----ATT--TTGTCATTTCTGATACTAGTC--GT----AC--ACGTGGAT---GAAATGAAGCAGTTTA-AATTAACTCTC---AATAAAAAAC-----TAACAGTAAAGAT-------------CATCG-----CGTC--ATCAATAATTGGAATGACCTTCCCCAGGA----TGTTATCACATCAGAT----TCAATGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAATTTA----TGAAAA-ATGAGTCACTAGAGGTTATACCTAAATTTTAAA---CTC--------CCATAAAAT--G--TA--AATGTAAATATG
gi|3 : tgATATTCCCTTA-GAT--AGAGAAGACT--AAG-----TGATTTTAT-GAAATCTACAAACTGAT---CAACAAATAC-ATTATAAATC-T------TT--TTGTTCTCTCTGATATTAGTTGGAC----ACCTACCTGAACACAAAAATGAAGCTGTCC--AACAAACTCTA---CACAAATGAC-----TAAC
gi|4 : tatattgattgacagttttcaaattgtttataacacctatatgtgagacccattgtggaatactgcattcagagtatcatgtgaaagatattgagactttagaaagggtccagaggtatgtctacaagcactaaattcTATATTCCC----A-C---GAGCCGGCCCAGAG--G--AGGTTGAGTTGAAACCTATGAAATGACAACCAATAAACACTGATAAATACAAT-----ATT--attgagagaaaactttttcgaaatatttag
gi|5 : acccgttattgaatacagagttggtgctcgtattctgtgagagatcttgaaactttggagaaagtgcaactgtatgccactcgtttcataccttagctcaaaacactttcgtactacgagcgacgacacacattaaatcTATTAGTC--AT----AC--ACGTGGACAC-GAAATGA-----TTCA-AACCA-----------CAAAAGAC-----TATCTTTAAGGATAAATTTTTTCAGCCTTCA-----CCTT--ATCAATAGTTGAAATGACTTCCCAGAGGA----TGCTACTGCAGCTGAA----TCTGAGGACGTCTTCTAACACTGACTAGACCACACCACTTGAT-AGAAACTA----TGAAAA-ATGG-------GAGGCAATGTCTAAATgccgtgaaataatctttgtgctt
gi|6 : TTATTTCTGATGCTTATC--AA----AC--ACATGGACAG-GAAAGGAAACTGTTCATAAATGTCTCTCATTTAGGAAATAC-----T-----------T-------------CTT-------TGTC--------AGTTGGAGTGTCCTCCCACAGGGTCACTATCATTGCATTCAAT----ACCATGGATACTGTTAAACAGAGACTAAATATT--AAGTGGAT-TTAGAACA----TGAAAC-AT
gi|7 : TCG-----CGTC---TCGATAGTTGGAATGACCTCCCCCGGGA----TATTATCGTGTCCAAT----TCAGTCAACACTTTCATACACAGA--AGACTGC--CACTGGAT-T-AAATTA----TCAAGA-ATGGGATGCTAGAGGATATGCCTAAATCT
gi|8 : caacagattaaatggagACATTAGTC--ATGAATAC--ATGTTGACAC-GAAATGAAACTGTTTA-AACCAACTCGT---CATAAGGAA------GAACTGT----TT-------------TTTCT-----TGTT--ATCAACAGTCTGAAT---CGTCACCAGGG----TGTTATTGCTTCTGGA----TCAGTGG
gi|9 : T-------------CTTCG-----CGTC--ATCAATAGTTTGAATGGCAATCCCCAGGA----TGTTACCGCGTCAGAT----TCAGTGGACACCTTCAAACACAGACTAGTCCGC--CGCGAGAT-TAAAAGTA----TTAAAT-ATGGGACACTAGTGGCCATGCTTTAATCcctgggctcacacct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTTCTAATACATATATGAGACCAATTATGGAATACTGTGTTCAGAGTTAGTGCCCTTGTTCTGTAAAAGACATTGAGATTTTAAAAAGAGTCCAAATGTACGCCACTCGT
Unaligned ( gi|13 ): AAAGGGTCAAAAGGTAATGCCACTTGTCTCATACCTGAGCTCAAAACACTTTCATACTATGAGTGCCTTCCTATTTCTGTAATCAAAAAGTTAA
Unaligned ( gi|15 ): ATAACAAGATATACTAAATATAACCTAAAATGTATCTATGATACTGAAAAATTGCCAATAGGCTTATAATATGATA
Alignments
lowQualScore : 333333 1 111 3333333 1 222222 11 11111111 1111 5555555555555555555555555555555 11111 1111 111 444444444 22222 11
lowQualScore : 111111 0 777 1 7777 1111111 99999 3 777 0 1 1 6 888888 33 0 1 44444444 99 5 0 5 1 8 2222 77 0000000000000000000000000000000 44444 999 2 11 3 9999 1 6 9999 66 5 3 2 0000 5 0 3 3 777 000000000 33333 33 0
lowQualScore : ...... . ... . .... ....... ..... . ... . . . . ...... .. . . ........ .. . . . . . .... .. ............................... ..... ... . .. . .... . . .... .. . . . .... . . . . ... ......... ..... .. .
lowQualScore : 888888 0 555 0 2222 0000000 00000 2 555 0 0 0 5 222222 88 7 0 77777777 22 7 4 7 7 6 1111 99 4444444444444444444444444444444 33333 333 1 44 1 4444 7 4 4444 99 0 4 2 6666 0 7 6 0 555 555555555 88888 88 7
consensus : NNTATATTCCC--T-A-GCCA-G---AGAAGGCTAAG--G--T-GATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACACGAAA-TGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
Reference ( family-3065 ) : NNTATATTCCC--T-A-GCCA-G---AGANGGCTAAG--G--T-GATCTCGTTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACACGAAA-TGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
gi|1 : TATATTCCC--TGA-GCCA-G---AGGAGGTTAAACTG--T-GATCTCATTAAAACCTGTAAACTGATGGCCAATAAATAC-AATGTAGATCGTGAAATATTCTTCGTTCTCTCCGATATAAGTC--AT----AC--ACGTGGATACGACA-TGAAACTGTTTA-AACCAACTCTTCAT----AG--AATACATCTTTGAGGGAAAACGT-------------TTTCAACATTCGTCTTATCAACAGT-------------------G----TGGTAGTGCATTAAAT----AAAATGGACACCTT------TAGACTAATCTGG--CACGTGATATAAAGT------TGAAAG-ATCAGACACTAGAGGCATTGCCGAAATCTTAAA---TTC--------ACATAAAACTTG--TA--AATGTAAATG
gi|10 : tatactggatagtcttaaaacttttcataaacttatgttaaacccattagggacactgtgctcagagtttatgccagtattatgttaagatcttgaaactttagaaaaagtccaaaggtctcgtctcatacctgagttaaacgcactttcataccacaagcatcACTAGACTAC--CATCGGAT-TGAAATAAAAAATGAAAAAATGGGACACCAGAGGCTATACCTATATCTTAAAATTTTC--------ATAAAAAAC--T--TGACAATGTAAc
gi|11 : cttatatatatCAATGAACACCTTCAAGCACAGACTAGACCAC--CATTGGAT-TGTAATTA----CCAAAA-AT-GGAT-----------TGCCTAAATCTTAAA---TGCGGTATTAGGTATAAAAC--GGATA--AATGTGAACGTGctata
gi|14 : GGG----TATTTTAGTGTAAGGT----TCAGTGGACCCCTTCAAACACCGACTAa
gi|16 : gaattaatctCACAAAA-TGAAGCTGTTCC-AACCAACTCTACAT----AA--AGGAA-----TAACACT-GAGAT-------------CTTttttcggtattgaaagtgtt
gi|17 : GTTGGAATGACCTTGCCTGGGG----TGTTATTCTGTCTCATGCCATCAG----CACCTTCAAATAGAGAaatcttttaatcttttacag
gi|2 : TATATTCCC--T-AAGCCAAG---AGATGGCTTAG--GGGT-GATCTTCTTGAAACCTACAAACTGATGATCAACAAATAC-AATAAACATCGT-----ATT--TTGTCATTTCTGATACTAGTC--GT----AC--ACGTGGAT--GAAA-TGAAGCAGTTTA-AATTAACTCTCAAT----AA--AAAAC-----TAACAGTAAAGAT-------------CATCG-----CGTC--ATCAATAATTGGAATGACCTTCCCCAGGA----TGTTATCACATCAGAT----TCAATGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAATTTA----TGAAAA-ATGAGTCACTAGAGGTTATACCTAAATTTTAAA---CTC--------CCATAAAAT--G--TA--AATGTAAATATG
gi|3 : tgATATTCCC--TTA-GATA-G---AGAAGACTAAG-----T-GATTTTAT-GAAATCTACAAACTGAT---CAACAAATAC-ATTATAAATC-T------TT--TTGTTCTCTCTGATATTAGTTGGAC----ACCTACCTGAACACAAAAATGAAGCTGTCCA-A-CAAACTCTACAC----AA--ATGAC-----TAAC
gi|4 : tatattgattgacagttttcaaattgtttataacacctatatgtgagacccattgtggaatactgcattcagagtatcatgtgaaagatattgagactttagaaagggtccagaggtatgtctacaagcactaaattcTATATTCCCACG-A-GCCG-GCCCAGAGG----AG--G--TTGA----GTTGAAACCTATGAAATGACAACCAATAAACACTGATAAATACAAT-----ATT--attgagagaaaactttttcgaaatatttag
gi|5 : acccgttattgaatacagagttggtgctcgtattctgtgagagatcttgaaactttggagaaagtgcaactgtatgccactcgtttcataccttagctcaaaacactttcgtactacgagcgacgacacacattaaatcTATTAGTC--AT----AC--ACGTGGACACGAAA-TGA-----TTCA-AACCA--------C----AA--AAGAC-----TATCTTTAAGGATAAATTTTTTCAGCCTTCA-----CCTT--ATCAATAGTTGAAATGACTTCCCAGAGGA----TGCTACTGCAGCTGAA----TCTGAGGACGTCTTCTAACACTGACTAGACCACACCACTTGAT-AGAAACTA----TGAAAA-ATGG-------GAGGCAATGTCTAAATgccgtgaaataatctttgtgctt
gi|6 : TTATTTCTGATGCTTATC--AA----AC--ACATGGACAGGAAA-GGAAACTGTTCATAAATGTCTCT-CATTTAGGA--AATAC-----T-----------T-------------CTTTG------------TCA---GTTGGAGTGTCCTCCCACAGGGTCACTATCATTGCATTCAAT----ACCATGGATACTGTTAAACAGAGACTAAATATT--AAGTGGAT-TTAGAACA----TGAAAC-AT
gi|7 : TCG-----CGTC---TCGATAGTTGGAATGACCTCCCCCGGGA----TATTATCGTGTCCAAT----TCAGTCAACACTTTCATACACAGA--AGACTGC--CACTGGAT-T-AAATTA----TCAAGA-ATGGGATGCTAGAGGATATGCCTAAATCT
gi|8 : caacagattaaatggagACATTAGTC--ATGAATAC--ATGTTGACACGAAA-TGAAACTGTTTA-AACCAACTCGTCAT----AAGGAAG--------AACTGT----TT-------------TTTCT-----TGTT--ATCAACAGTCTGAAT---CGTCACCAGGG----TGTTATTGCTTCTGGA----TCAGTGG
gi|9 : T-------------CTTCG-----CGTC--ATCAATAGTTTGAATGGCAATCCCCAGGA----TGTTACCGCGTCAGAT----TCAGTGGACACCTTCAAACACAGACTAGTCCGC--CGCGAGAT-TAAAAGTA----TTAAAT-ATGGGACACTAGTGGCCATGCTTTAATCcctgggctcacacct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTTCTAATACATATATGAGACCAATTATGGAATACTGTGTTCAGAGTTAGTGCCCTTGTTCTGTAAAAGACATTGAGATTTTAAAAAGAGTCCAAATGTACGCCACTCGT
Unaligned ( gi|13 ): AAAGGGTCAAAAGGTAATGCCACTTGTCTCATACCTGAGCTCAAAACACTTTCATACTATGAGTGCCTTCCTATTTCTGTAATCAAAAAGTTAA
Unaligned ( gi|15 ): ATAACAAGATATACTAAATATAACCTAAAATGTATCTATGATACTGAAAAATTGCCAATAGGCTTATAATATGATA
Alignments
lowQualScore : 3333333333333333 44444 1 222222 11 11111111 1111 5555555555555555555555555555555 11111 1111 111 444444444 22222 11
lowQualScore : 8888888888888888 1 22222 0 33 3 777 0 1 1 6 888888 33 0 1 44444444 99 5 0 77 1 8 2222 77 0000000000000000000000000000000 44444 999 2 11 3 9999 1 6 9999 66 5 3 2 0000 5 0 3 3 777 000000000 33333 33 0
lowQualScore : ................ . ..... . .. . ... . . . . ...... .. . . ........ .. . . .. . . .... .. ............................... ..... ... . .. . .... . . .... .. . . . .... . . . . ... ......... ..... .. .
lowQualScore : 0000000000000000 2 55555 2 88 2 555 0 0 0 5 222222 88 7 0 77777777 22 7 4 11 7 6 1111 99 4444444444444444444444444444444 33333 333 1 44 1 4444 7 4 4444 99 0 4 2 6666 0 7 6 0 555 555555555 88888 88 7
consensus : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
Reference ( family-3065 ) : NNTATATTCCC--T-A-GCC-----A-GAGAAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
gi|1 : TATATTCCC--TGA-GCC-----A-GAGGAGGTTAAACTG--TGATCTCATTAAAACCTGTAAACTGATGGCCAATAAATAC-AATGTAGATCGTGAAATATTCTTCGTTCTCTCCGATATAAGTC--AT----AC--ACGTGGATAC-GACATGAAACTGTTTA-AACCAACTCTTCAT----AG--AATACATCTTTGAGGGAAAACGT-------------TTTCAACATTCGTCTTATCAACAGT-------------------G----TGGTAGTGCATTAAAT----AAAATGGACACCTT------TAGACTAATCTGG--CACGTGATATAAAGT------TGAAAG-ATCAGACACTAGAGGCATTGCCGAAATCTTAAA---TTC--------ACATAAAACTTG--TA--AATGTAAATG
gi|10 : tatactggatagtcttaaaacttttcataaacttatgttaaacccattagggacactgtgctcagagtttatgccagtattatgttaagatcttgaaactttagaaaaagtccaaaggtctcgtctcatacctgagttaaacgcactttcataccacaagcatcACTAGACTAC--CATCGGAT-TGAAATAAAAAATGAAAAAATGGGACACCAGAGGCTATACCTATATCTTAAAATTTTC--------ATAAAAAAC--T--TGACAATGTAAc
gi|11 : cttatatatatCAATGAACACCTTCAAGCACAGACTAGACCAC--CATTGGAT-TGTAATTA----CCAAAA-AT-GGAT-----------TGCCTAAATCTTAAA---TGCGGTATTAGGTATAAAAC--GGATA--AATGTGAACGTGctata
gi|14 : GGG----TATTTTAGTGTAAGGT----TCAGTGGACCCCTTCAAACACCGACTAa
gi|16 : gaattaatctCAC-AAAATGAAGCTGTTCC-AACCAACTCTACAT----AA--AGGAA-----TAACACT-GAGAT-------------CTTttttcggtattgaaagtgtt
gi|17 : GTTGGAATGACCTTGCCTGGGG----TGTTATTCTGTCTCATGCCATCAG----CACCTTCAAATAGAGAaatcttttaatcttttacag
gi|2 : TATATTCCC--T-AAGCC-----AAGAGATGGCTTAG--GGGTGATCTTCTTGAAACCTACAAACTGATGATCAACAAATAC-AATAAACATCGT-----ATT--TTGTCATTTCTGATACTAGTC--GT----AC--ACGTGGAT---GAAATGAAGCAGTTTA-AATTAACTCTCAAT----AA--AAAAC-----TAACAGTAAAGAT-------------CATCG-----CGTC--ATCAATAATTGGAATGACCTTCCCCAGGA----TGTTATCACATCAGAT----TCAATGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAATTTA----TGAAAA-ATGAGTCACTAGAGGTTATACCTAAATTTTAAA---CTC--------CCATAAAAT--G--TA--AATGTAAATATG
gi|3 : tgATATTCCC--TTA-GAT-----A-GAGAAGACTAAG-----TGATTTTAT-GAAATCTACAAACTGAT---CAACAAATAC-ATTATAAATC-T------TT--TTGTTCTCTCTGATATTAGTTGGAC----ACCTACCTGAACACAAAAATGAAGCTGTCC--AACAAACTCTACAC----AA--ATGAC-----TAAC
gi|4 : tatattgattgacagttttcaaattgtttataacacctatatgtgagacccattgtggaatactgcattcagagtatcatgtgaaagatattgagactttagaaagggtccagaggtatgtctacaagcactaaattcTATATTCCCACG-A-GCCGGCCCA-GAGGAGGTTGAG-------------TTGAAACCTATGAAATGACAACCAATAAACACTGATAAATACAAT-----ATT--attgagagaaaactttttcgaaatatttag
gi|5 : acccgttattgaatacagagttggtgctcgtattctgtgagagatcttgaaactttggagaaagtgcaactgtatgccactcgtttcataccttagctcaaaacactttcgtactacgagcgacgacacacattaaatcTATTAGTC--AT----AC--ACGTGGACAC-GAAATGA-----TTCA-AACCA--------C----AA--AAGAC-----TATCTTTAAGGATAAATTTTTTCAGCCTTCA-----CCTT--ATCAATAGTTGAAATGACTTCCCAGAGGA----TGCTACTGCAGCTGAA----TCTGAGGACGTCTTCTAACACTGACTAGACCACACCACTTGAT-AGAAACTA----TGAAAA-ATGG-------GAGGCAATGTCTAAATgccgtgaaataatctttgtgctt
gi|6 : TTATTTCTGATGCTTATC--AA----AC--ACATGGACAG-GAAAGGAAACTGTTCATAAATGTCTCT-CATTTAGGA--AATAC-----T-----------T-------------CTTTG------------TCA---GTTGGAGTGTCCTCCCACAGGGTCACTATCATTGCATTCAAT----ACCATGGATACTGTTAAACAGAGACTAAATATT--AAGTGGAT-TTAGAACA----TGAAAC-AT
gi|7 : TCG-----CGTC---TCGATAGTTGGAATGACCTCCCCCGGGA----TATTATCGTGTCCAAT----TCAGTCAACACTTTCATACACAGA--AGACTGC--CACTGGAT-T-AAATTA----TCAAGA-ATGGGATGCTAGAGGATATGCCTAAATCT
gi|8 : caacagattaaatggagACATTAGTC--ATGAATAC--ATGTTGACAC-GAAATGAAACTGTTTA-AACCAACTCGTCAT----AAGGAAG--------AACTGT----TT-------------TTTCT-----TGTT--ATCAACAGTCTGAAT---CGTCACCAGGG----TGTTATTGCTTCTGGA----TCAGTGG
gi|9 : T-------------CTTCG-----CGTC--ATCAATAGTTTGAATGGCAATCCCCAGGA----TGTTACCGCGTCAGAT----TCAGTGGACACCTTCAAACACAGACTAGTCCGC--CGCGAGAT-TAAAAGTA----TTAAAT-ATGGGACACTAGTGGCCATGCTTTAATCcctgggctcacacct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTTCTAATACATATATGAGACCAATTATGGAATACTGTGTTCAGAGTTAGTGCCCTTGTTCTGTAAAAGACATTGAGATTTTAAAAAGAGTCCAAATGTACGCCACTCGT
Unaligned ( gi|13 ): AAAGGGTCAAAAGGTAATGCCACTTGTCTCATACCTGAGCTCAAAACACTTTCATACTATGAGTGCCTTCCTATTTCTGTAATCAAAAAGTTAA
Unaligned ( gi|15 ): ATAACAAGATATACTAAATATAACCTAAAATGTATCTATGATACTGAAAAATTGCCAATAGGCTTATAATATGATA
Alignments
lowQualScore : 3333333333333333 44444 1 222222 11 11111111 1111 5555555555555555555555555555555 11111 1111 111 444444444 22222 11
lowQualScore : 8888888888888888 1 22222 0 33 3 777 0 1 1 6 888888 33 0 1 44444444 99 5 0 77 1 8 2222 77 0000000000000000000000000000000 44444 999 2 11 3 9999 1 6 9999 66 5 3 2 0000 5 0 3 3 777 000000000 33333 33 0
lowQualScore : ................ . ..... . .. . ... . . . . ...... .. . . ........ .. . . .. . . .... .. ............................... ..... ... . .. . .... . . .... .. . . . .... . . . . ... ......... ..... .. .
lowQualScore : 0000000000000000 2 55555 2 88 2 555 0 0 0 5 222222 88 7 0 77777777 22 7 4 11 7 6 1111 99 4444444444444444444444444444444 33333 333 1 44 1 4444 7 4 4444 99 0 4 2 6666 0 7 6 0 555 555555555 88888 88 7
consensus : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
Reference ( family-3065 ) : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
gi|1 : TATATTCCC--TGA-GCC-----A-GAGGAGGTTAAACTG--TGATCTCATTAAAACCTGTAAACTGATGGCCAATAAATAC-AATGTAGATCGTGAAATATTCTTCGTTCTCTCCGATATAAGTC--AT----AC--ACGTGGATAC-GACATGAAACTGTTTA-AACCAACTCTTCAT----AG--AATACATCTTTGAGGGAAAACGT-------------TTTCAACATTCGTCTTATCAACAGT-------------------G----TGGTAGTGCATTAAAT----AAAATGGACACCTT------TAGACTAATCTGG--CACGTGATATAAAGT------TGAAAG-ATCAGACACTAGAGGCATTGCCGAAATCTTAAA---TTC--------ACATAAAACTTG--TA--AATGTAAATG
gi|10 : tatactggatagtcttaaaacttttcataaacttatgttaaacccattagggacactgtgctcagagtttatgccagtattatgttaagatcttgaaactttagaaaaagtccaaaggtctcgtctcatacctgagttaaacgcactttcataccacaagcatcACTAGACTAC--CATCGGAT-TGAAATAAAAAATGAAAAAATGGGACACCAGAGGCTATACCTATATCTTAAAATTTTC--------ATAAAAAAC--T--TGACAATGTAAc
gi|11 : cttatatatatCAATGAACACCTTCAAGCACAGACTAGACCAC--CATTGGAT-TGTAATTA----CCAAAA-AT-GGAT-----------TGCCTAAATCTTAAA---TGCGGTATTAGGTATAAAAC--GGATA--AATGTGAACGTGctata
gi|14 : GGG----TATTTTAGTGTAAGGT----TCAGTGGACCCCTTCAAACACCGACTAa
gi|16 : gaattaatctCAC-AAAATGAAGCTGTTCC-AACCAACTCTACAT----AA--AGGAA-----TAACACT-GAGAT-------------CTTttttcggtattgaaagtgtt
gi|17 : GTTGGAATGACCTTGCCTGGGG----TGTTATTCTGTCTCATGCCATCAG----CACCTTCAAATAGAGAaatcttttaatcttttacag
gi|2 : TATATTCCC--T-AAGCC-----AAGAGATGGCTTAG--GGGTGATCTTCTTGAAACCTACAAACTGATGATCAACAAATAC-AATAAACATCGT-----ATT--TTGTCATTTCTGATACTAGTC--GT----AC--ACGTGGAT---GAAATGAAGCAGTTTA-AATTAACTCTCAAT----AA--AAAAC-----TAACAGTAAAGAT-------------CATCG-----CGTC--ATCAATAATTGGAATGACCTTCCCCAGGA----TGTTATCACATCAGAT----TCAATGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAATTTA----TGAAAA-ATGAGTCACTAGAGGTTATACCTAAATTTTAAA---CTC--------CCATAAAAT--G--TA--AATGTAAATATG
gi|3 : tgATATTCCC--TTA-GAT-----A-GAGAAGACTAAG-----TGATTTTAT-GAAATCTACAAACTGAT---CAACAAATAC-ATTATAAATC-T------TT--TTGTTCTCTCTGATATTAGTTGGAC----ACCTACCTGAACACAAAAATGAAGCTGTCC--AACAAACTCTACAC----AA--ATGAC-----TAAC
gi|4 : tatattgattgacagttttcaaattgtttataacacctatatgtgagacccattgtggaatactgcattcagagtatcatgtgaaagatattgagactttagaaagggtccagaggtatgtctacaagcactaaattcTATATTCCCACG-A-GCCGGCCCA-GAGGAGGTTGAG-------------TTGAAACCTATGAAATGACAACCAATAAACACTGATAAATACAAT-----ATT--attgagagaaaactttttcgaaatatttag
gi|5 : acccgttattgaatacagagttggtgctcgtattctgtgagagatcttgaaactttggagaaagtgcaactgtatgccactcgtttcataccttagctcaaaacactttcgtactacgagcgacgacacacattaaatcTATTAGTC--AT----AC--ACGTGGACAC-GAAATGA-----TTCA-AACCA--------C----AA--AAGAC-----TATCTTTAAGGATAAATTTTTTCAGCCTTCA-----CCTT--ATCAATAGTTGAAATGACTTCCCAGAGGA----TGCTACTGCAGCTGAA----TCTGAGGACGTCTTCTAACACTGACTAGACCACACCACTTGAT-AGAAACTA----TGAAAA-ATGG-------GAGGCAATGTCTAAATgccgtgaaataatctttgtgctt
gi|6 : TTATTTCTGATGCTTATC--AA----AC--ACATGGACAG-GAAAGGAAACTGTTCATAAATGTCTCT-CATTTAGGA--AATAC-----T-----------T-------------CTTTG------------TCA---GTTGGAGTGTCCTCCCACAGGGTCACTATCATTGCATTCAAT----ACCATGGATACTGTTAAACAGAGACTAAATATT--AAGTGGAT-TTAGAACA----TGAAAC-AT
gi|7 : TCG-----CGTC---TCGATAGTTGGAATGACCTCCCCCGGGA----TATTATCGTGTCCAAT----TCAGTCAACACTTTCATACACAGA--AGACTGC--CACTGGAT-T-AAATTA----TCAAGA-ATGGGATGCTAGAGGATATGCCTAAATCT
gi|8 : caacagattaaatggagACATTAGTC--ATGAATAC--ATGTTGACAC-GAAATGAAACTGTTTA-AACCAACTCGTCAT----AAGGAAG--------AACTGT----TT-------------TTTCT-----TGTT--ATCAACAGTCTGAAT---CGTCACCAGGG----TGTTATTGCTTCTGGA----TCAGTGG
gi|9 : T-------------CTTCG-----CGTC--ATCAATAGTTTGAATGGCAATCCCCAGGA----TGTTACCGCGTCAGAT----TCAGTGGACACCTTCAAACACAGACTAGTCCGC--CGCGAGAT-TAAAAGTA----TTAAAT-ATGGGACACTAGTGGCCATGCTTTAATCcctgggctcacacct
blockSeqs : ACGAGCCGGCCCA T GGG TC T GAT T A C G A . A ATGAAT CT A AT A A TTAG GG TATCTTTAAGGATAAATTTTTTCAGC . A A TT G TCAC A A GCCA AC . G A AAAA A A T ATT GGTATTAGG GGA AC
blockSeqs : TAAGCCAA A . TA T AAC . T A A A . C GGAC . . C A C . . TAACAGTAAAGAT . A A TT A . T T . . . G T . . A T . A T .
blockSeqs : TTAGATA G . . . . . A T . . . A GT . . A A A . . TAACACTGAGAT . A A TC A . C A . . . G T . . G A . C G .
blockSeqs : AT . . A T T . . AACTGTTT . A T TC A . T T . . . G T . . A T
blockSeqs : AA . . A A . . . TT . . A TC G . T C . . . T C . . . C
blockSeqs : . . . . . . . . G GT A . C C . . . A T . . . .
blockSeqs : . AT A . T T . . . . T . .
blockSeqs : . C A .
blockSeqCons : TAACTNTNAGAT******************* ***** A** TC
originalCons : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGAC-----TAACNGTAAAGAT-------------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
finalCons : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGACTAACTNTNAGAT-------------------CTTCG-----CGTCA--TCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGACCGC--CACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTTCTAATACATATATGAGACCAATTATGGAATACTGTGTTCAGAGTTAGTGCCCTTGTTCTGTAAAAGACATTGAGATTTTAAAAAGAGTCCAAATGTACGCCACTCGT
Unaligned ( gi|13 ): AAAGGGTCAAAAGGTAATGCCACTTGTCTCATACCTGAGCTCAAAACACTTTCATACTATGAGTGCCTTCCTATTTCTGTAATCAAAAAGTTAA
Unaligned ( gi|15 ): ATAACAAGATATACTAAATATAACCTAAAATGTATCTATGATACTGAAAAATTGCCAATAGGCTTATAATATGATA
Alignments
lowQualScore : 3333333333333333 44444 1 222222 11 11111111 1111 5555555555555555555555555 11111 1111 111 444444444 22222 11
lowQualScore : 8888888888888888 1 22222 0 33 3 777 0 1 1 6 888888 33 0 1 44444444 99 5 0 77 1 8 2222 77 1 1 7777777777777777777777777 44444 999 2 11 3 9999 1 6 9999 66 5 3 2 0000 5 0 3 3 777 000000000 33333 33 0
lowQualScore : ................ . ..... . .. . ... . . . . ...... .. . . ........ .. . . .. . . .... .. . . ......................... ..... ... . .. . .... . . .... .. . . . .... . . . . ... ......... ..... .. .
lowQualScore : 0000000000000000 2 55555 2 88 2 555 0 0 0 5 222222 88 7 0 77777777 22 7 4 11 7 6 1111 99 4 9 0000000000000000000000000 33333 333 1 44 1 4444 7 4 4444 99 0 4 2 6666 0 7 6 0 555 555555555 88888 88 7
consensus : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGACTAACNTTGA-G-------AT---------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGAC--CGCCACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
Reference ( family-3065 ) : NNTATATTCCC--T-A-GCC-----A-GAGGAGGCTAAG--G--TGATCTTATTGAAACCTACAAACTGATGACCAACAAATAC-AATANANATCGT-----ATT--TCGTTNTCTCTGATATTAGTC--AT----AC--ACGTGGACAC-GAAATGAAGCTGTTCA-AACCAACTCTNCAT----AA--AAGACTAACTNTNA-G-------AT---------CTTCG-----CGTC--ATCAATAGTTGGAATGACCTCCCCCGGGG----TGTTATCGCGTCCGAT----TCAGTGGACACCTTCAAACACAGACTAGAC--CGCCACTGGAT-TGAAATTA----TGAAAA-ATGGGACACTAGAGGCNATGCCTAAATCTTAAA---TTC--------GCATAAAAC--G--TA--AATGTAAACGTG
gi|1 : TATATTCCC--TGA-GCC-----A-GAGGAGGTTAAACTG--TGATCTCATTAAAACCTGTAAACTGATGGCCAATAAATAC-AATGTAGATCGTGAAATATTCTTCGTTCTCTCCGATATAAGTC--AT----AC--ACGTGGATAC-GACATGAAACTGTTTA-AACCAACTCTTCAT----AG--AATAC-ATCTTTGA-GGGAAAACGT---------TTTCAACATTCGTCTTATCAACAGT-------------------G----TGGTAGTGCATTAAAT----AAAATGGACACCTT------TAGACTAATC--TGGCACGTGATATAAAGT------TGAAAG-ATCAGACACTAGAGGCATTGCCGAAATCTTAAA---TTC--------ACATAAAACTTG--TA--AATGTAAATG
gi|10 : tatactggatagtcttaaaacttttcataaacttatgttaaacccattagggacactgtgctcagagtttatgccagtattatgttaagatcttgaaactttagaaaaagtccaaaggtctcgtctcatacctgagttaaacgcactttcataccacaagcatcACTAGAC--TACCATCGGAT-TGAAATAAAAAATGAAAAAATGGGACACCAGAGGCTATACCTATATCTTAAAATTTTC--------ATAAAAAAC--T--TGACAATGTAAc
gi|11 : cttatatatatCAATGAACACCTTCAAGCACAGACTAGAC--CACCATTGGAT-TGTAATTA----CCAAAA-AT-GGAT-----------TGCCTAAATCTTAAA---TGCGGTATTAGGTATAAAAC--GGATA--AATGTGAACGTGctata
gi|14 : GGG----TATTTTAGTGTAAGGT----TCAGTGGACCCCTTCAAACACCGACTAa
gi|16 : gaattaatctCAC-AAAATGAAGCTGTTCC-AACCAACTCTACAT----AA--AGGAATAACACTGA-G-------AT---------CTTttttcggtattgaaagtgtt
gi|17 : GTTGGAATGACCTTGCCTGGGG----TGTTATTCTGTCTCATGCCATCAG----CACCTTCAAATAGAGAaatcttttaatcttttacag
gi|2 : TATATTCCC--T-AAGCC-----AAGAGATGGCTTAG--GGGTGATCTTCTTGAAACCTACAAACTGATGATCAACAAATAC-AATAAACATCGT-----ATT--TTGTCATTTCTGATACTAGTC--GT----AC--ACGTGGAT---GAAATGAAGCAGTTTA-AATTAACTCTCAAT----AA--AAAACTAACAGTAAAG-------AT---------CATCG-----CGTC--ATCAATAATTGGAATGACCTTCCCCAGGA----TGTTATCACATCAGAT----TCAATGGACACCTTCAAACACAGACTAGAC--CGCCACTGGAT-TGAATTTA----TGAAAA-ATGAGTCACTAGAGGTTATACCTAAATTTTAAA---CTC--------CCATAAAAT--G--TA--AATGTAAATATG
gi|3 : tgATATTCCC--TTA-GAT-----A-GAGAAGACTAAG-----TGATTTTAT-GAAATCTACAAACTGAT---CAACAAATAC-ATTATAAATC-T------TT--TTGTTCTCTCTGATATTAGTTGGAC----ACCTACCTGAACACAAAAATGAAGCTGTCC--AACAAACTCTACAC----AA--ATGACTAACATTGA-G-------A
gi|4 : tatattgattgacagttttcaaattgtttataacacctatatgtgagacccattgtggaatactgcattcagagtatcatgtgaaagatattgagactttagaaagggtccagaggtatgtctacaagcactaaattcTATATTCCCACG-A-GCCGGCCCA-GAGGAGGTTGAG-------------TTGAAACCTATGAAATGACAACCAATAAACACTGATAAATACAAT-----ATT--gaaaactttttcgaaatatttag
gi|5 : acccgttattgaatacagagttggtgctcgtattctgtgagagatcttgaaactttggagaaagtgcaactgtatgccactcgtttcataccttagctcaaaacactttcgtactacgagcgacgacacacattaaatcTATTAGTC--AT----AC--ACGTGGACAC-GAAATGA-----TTCA-AACCA--------C----AA--AAGACTATCTTTAA-GGATAA--ATTTTTTCAGCCTTCA-----CCTT--ATCAATAGTTGAAATGACTTCCCAGAGGA----TGCTACTGCAGCTGAA----TCTGAGGACGTCTTCTAACACTGACTAGACCACACCACTTGAT-AGAAACTA----TGAAAA-ATGG-------GAGGCAATGTCTAAATgccgtgaaataatctttgtgctt
gi|6 : TTATTTCTGATGCTTATC--AA----AC--ACATGGACAG-GAAAGGAAACTGTTCATAAATGTCTCT-CATTTAGGA--AATACT------------------T---------CTTTG------------TCA---GTTGGAGTGTCCTCCCACAGGGTCACTATCATTGCATTCAAT----ACCATGGATACTGTTAAACAGAGACTAAAT--ATTAAGTGGAT-TTAGAACA----TGAAAC-AT
gi|7 : TCG-----CGTC---TCGATAGTTGGAATGACCTCCCCCGGGA----TATTATCGTGTCCAAT----TCAGTCAACACTTTCATACACAGA--AGAC--TGCCACTGGAT-T-AAATTA----TCAAGA-ATGGGATGCTAGAGGATATGCCTAAATCT
gi|8 : caacagattaaatggagACATTAGTC--ATGAATAC--ATGTTGACAC-GAAATGAAACTGTTTA-AACCAACTCGTCAT----AAGGAAG---AACTGTT-----------T---------TTTCT-----TGTT--ATCAACAGTCTGAAT---CGTCACCAGGG----TGTTATTGCTTCTGGA----TCAGTGG
gi|9 : T---------CTTCG-----CGTC--ATCAATAGTTTGAATGGCAATCCCCAGGA----TGTTACCGCGTCAGAT----TCAGTGGACACCTTCAAACACAGACTAGTC--CGCCGCGAGAT-TAAAAGTA----TTAAAT-ATGGGACACTAGTGGCCATGCTTTAATCcctgggctcacacct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTATTTCTAATACATATATGAGACCAATTATGGAATACTGTGTTCAGAGTTAGTGCCCTTGTTCTGTAAAAGACATTGAGATTTTAAAAAGAGTCCAAATGTACGCCACTCGT
Unaligned ( gi|13 ): AAAGGGTCAAAAGGTAATGCCACTTGTCTCATACCTGAGCTCAAAACACTTTCATACTATGAGTGCCTTCCTATTTCTGTAATCAAAAAGTTAA
Unaligned ( gi|15 ): ATAACAAGATATACTAAATATAACCTAAAATGTATCTATGATACTGAAAAATTGCCAATAGGCTTATAATATGATA