lowQualScore                  :     1        2                                   
lowQualScore                  :     2        0    2         5    5               
lowQualScore                  :     .        .    .         .    .               
lowQualScore                  :     5        0    5         0    3               
consensus                     :  ATCTTGTCGCTCGTTTT-TCATAGTCT-ATGT-AAATAGGCTATGATT
Reference ( gi|10 )           :  ATCGTGTCGCTC-TTTT-TCATAGTCT-ATGT-AAATAGGCTATGATT
gi|3                          :  ATCTTGTCGCTC-TTTTTTCATAGTCT-ATGT-AAATAAGTTATGATT
gi|13                         :  ATCTTGTCACTCGTTTT-TCATAGTCTTATGT-AAATAGGCTATGtt
gi|5                          :  ATCTTGCCGCTCGTTTT-TCATAGTCT-ATGT-AAATAGTCTATGCTT
gi|1                          : cATCTTGTCGCTCGTTTT-TCATAGTCT-GTGTAAAATAGGCTATGCTT
gi|11                         :  ATCTTGTCGCTC-GTTT-TTATAATCT-ATGT-AAAAAGGCTATGAtt
gi|15                         :  ATCTTGTCGTTTGTTTT-TCATAGTCT-ATGT-ATAT---CTATGgt
gi|6                          :  cTCTTGTCGCTTATTTT-CCATAGTCT-ATGT-AAATAGGCTATGATT
gi|2                          :   TCTTGTCGCTCGTTTT-TCATAGTCT-ATGTAAAAAAGGGTATGATTtc
gi|12                         :  gTCTTGTCGATC-GTTT-TTATAGTCT-ATGT-TTATAGACTATGATTt
gi|9                          :   TCGTCTTG-TC-GTTT-TCATAGTCTAATGT-TAAAAGACTATGCTTt
gi|4                          :    atTGTCGCTCATTTT-TCATAGTCT-ATGT-ACATAGGTAATGA
gi|7                          :   cctTGTGGCTC-GCTT-TTATAGTCT-ATGT-TTATAGACTATGATgtttt
gi|16                         :   gctTGTCGCTC-GTTT-TCATAGTCT-ATGgttt
gi|14                         :   aattGTCGCCCATTTT-TCATAGTCT-ATGT-AAATAGGCTATGATTcctgtgattttt
gi|8                          :       GTCGTTC-GTTT-TCATTGGCT-ATGT-AAATAGGCTATGGTTtt
gi|17                         :         atctg-TTTT-TCGTAGTCT-ATGT-AAATAGGCTATGt

lowQualScore                  :                             2 2    5               
lowQualScore                  :                             . .    .               
lowQualScore                  :                             4 4    0               
consensus                     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
Reference ( family-3059 )     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|1                          :    ATCTTGTCGCTCGTTTTTCATAGTC-T-GTGTAAAATAGGCTATGCTT
gi|10                         :    ATCGTGTCGCTC-TTTTTCATAGTC-T-ATGT-AAATAGGCTATGATTtt
gi|11                         :    ATCTTGTCGCTCGTTTTT-ATAATC-T-ATGT-AAAAAGGCTATGA
gi|12                         :     TCTTGTCGATCGTTTTT-ATAGTC-T-ATGT-TTATAGACTATGATTgt
gi|13                         :    ATCTTGTCACTCGTTTTTCATAGTCTT-ATGT-AAATAGGCTATGt
gi|14                         :         GTCGCCCATTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|15                         :    ATCTTGTCGTTTGTTTTTCATAGTC-T-ATGT-ATAT---CTATGtt
gi|16                         :      cTTGTCGCTCGTTTT-CATAGTC-T-ATG
gi|17                         : aatATCTT-----TCGTTTTTCGTAGTC-T-ATGT-AAATAGGCTATGcctgtgattttt
gi|2                          :    cTCTTGTCGCTCGTTTTTCATAGTC-T-ATGTAAAAAAGGGTATGATT
gi|3                          :   gATCTTGTCGCTCTTTTTTCATAGTC-T-ATGT-AAATAAGTTATGATTt
gi|4                          :      CTTGTCGCTCATTTTTCATAGTC-T-ATGT-ACATAGGTAATGAtt
gi|5                          :   cATCTTGCCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGTCTATGCTTgtttt
gi|6                          :    cTCTTGTCGCTTATTTTCCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|7                          :      CTTGTGGCTCGCTTTT-ATAGTC-T-ATGT-TTATAGACTATGATtc
gi|8                          :   gATCTGGTCGTTCGTTTT-CATTGGC-T-ATGT-AAATAGGCTATGGTTgttt
gi|9                          :     TCTTGTCG-----TTTTCATAGTC-TAATGT-TAAAAGACTATGCTTt

lowQualScore                  :                             2 2    5               
lowQualScore                  :                             . .    .               
lowQualScore                  :                             4 4    0               
consensus                     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
Reference ( family-3059 )     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|1                          :    ATCTTGTCGCTCGTTTTTCATAGTC-T-GTGTAAAATAGGCTATGCTT
gi|10                         :    ATCGTGTCGCTC-TTTTTCATAGTC-T-ATGT-AAATAGGCTATGATTtt
gi|11                         :    ATCTTGTCGCTCGTTTTT-ATAATC-T-ATGT-AAAAAGGCTATGA
gi|12                         :     TCTTGTCGATCGTTTTT-ATAGTC-T-ATGT-TTATAGACTATGATTgt
gi|13                         :    ATCTTGTCACTCGTTTTTCATAGTCTT-ATGT-AAATAGGCTATGt
gi|14                         :         GTCGCCCATTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|15                         :    ATCTTGTCGTTTGTTTTTCATAGTC-T-ATGT-ATAT---CTATGtt
gi|16                         :      cTTGTCGCTCGTTTT-CATAGTC-T-ATG
gi|17                         : aatATCTT-----TCGTTTTTCGTAGTC-T-ATGT-AAATAGGCTATGcctgtgattttt
gi|2                          :    cTCTTGTCGCTCGTTTTTCATAGTC-T-ATGTAAAAAAGGGTATGATT
gi|3                          :   gATCTTGTCGCTCTTTTTTCATAGTC-T-ATGT-AAATAAGTTATGATTt
gi|4                          :      CTTGTCGCTCATTTTTCATAGTC-T-ATGT-ACATAGGTAATGAtt
gi|5                          :   cATCTTGCCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGTCTATGCTTgtttt
gi|6                          :    cTCTTGTCGCTTATTTTCCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|7                          :      CTTGTGGCTCGCTTTT-ATAGTC-T-ATGT-TTATAGACTATGATtc
gi|8                          :   gATCTGGTCGTTCGTTTT-CATTGGC-T-ATGT-AAATAGGCTATGGTTgttt
gi|9                          :     TCTTGTCG-----TTTTCATAGTC-TAATGT-TAAAAGACTATGCTTt


blockSeqs                     :                             T A    A
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .    .
blockSeqs                     :                             . .     


blockSeqCons                  :    
originalCons                  :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
finalCons                     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT

lowQualScore                  :                             2 2    5               
lowQualScore                  :                             . .    .               
lowQualScore                  :                             4 4    0               
consensus                     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
Reference ( family-3059 )     :    ATCTTGTCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|1                          :    ATCTTGTCGCTCGTTTTTCATAGTC-T-GTGTAAAATAGGCTATGCTT
gi|10                         :    ATCGTGTCGCTC-TTTTTCATAGTC-T-ATGT-AAATAGGCTATGATTtt
gi|11                         :    ATCTTGTCGCTCGTTTTT-ATAATC-T-ATGT-AAAAAGGCTATGA
gi|12                         :     TCTTGTCGATCGTTTTT-ATAGTC-T-ATGT-TTATAGACTATGATTgt
gi|13                         :    ATCTTGTCACTCGTTTTTCATAGTCTT-ATGT-AAATAGGCTATGt
gi|14                         :         GTCGCCCATTTTTCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|15                         :    ATCTTGTCGTTTGTTTTTCATAGTC-T-ATGT-ATAT---CTATGtt
gi|16                         :      cTTGTCGCTCGTTTT-CATAGTC-T-ATG
gi|17                         : aatATCTT-----TCGTTTTTCGTAGTC-T-ATGT-AAATAGGCTATGcctgtgattttt
gi|2                          :    cTCTTGTCGCTCGTTTTTCATAGTC-T-ATGTAAAAAAGGGTATGATT
gi|3                          :   gATCTTGTCGCTCTTTTTTCATAGTC-T-ATGT-AAATAAGTTATGATTt
gi|4                          :      CTTGTCGCTCATTTTTCATAGTC-T-ATGT-ACATAGGTAATGAtt
gi|5                          :   cATCTTGCCGCTCGTTTTTCATAGTC-T-ATGT-AAATAGTCTATGCTTgtttt
gi|6                          :    cTCTTGTCGCTTATTTTCCATAGTC-T-ATGT-AAATAGGCTATGATT
gi|7                          :      CTTGTGGCTCGCTTTT-ATAGTC-T-ATGT-TTATAGACTATGATtc
gi|8                          :   gATCTGGTCGTTCGTTTT-CATTGGC-T-ATGT-AAATAGGCTATGGTTgttt
gi|9                          :     TCTTGTCG-----TTTTCATAGTC-TAATGT-TAAAAGACTATGCTTt