lowQualScore : 1 1 11 11 66666666666666666666666 22222222222 1 1
lowQualScore : 7 6 5 0 22 8 8 00 11 11111111111111111111111 8888 2 33 88888888888 0 77 5 1 6 0
lowQualScore : . . . . .. . . .. .. ....................... .... . .. ........... . .. . . . .
lowQualScore : 0 0 0 7 00 0 0 88 99 11111111111111111111111 9999 9 99 66666666666 5 11 0 3 0 2
consensus : TTTTTGAGGCGCCAGATTTTCTGGC-A-TCTCTTCAGTATCGTAGGATG--T-TGTA-GT-TGA--AA-ATGTAGCTCATT----T-CATATGCAC--CNANNAA-----CTGCTTCCTAAT-NGTTTCAAACTACTCGAGAGAAAGTAGTTCTTGA
Reference ( gi|2 ) : TTATTAAGGCCCCAGACTTTCCAGC-A-TCTCTTGAGTACCGTAGGATG-TT-TGTA-GT-TGAT-AA-ATGTAGCTCATT----T-CATATGCAC--CCAAAAA-----CTGCTTCCTCAT-GGTTTGAAACTACTTAAGAGAAAGTAGTTCTTGA
gi|3 : TTTTTGAGGTACTAAATTTTCTGGC-A-TCTCATTAGTATCGTAGGATG-TT-GGTA-GT-TGGA-AA-ATTTAGCTCATT----T-CGTTTGC--------AAT-----CT-CTT---------------ACTGCTCAAGAGAAAGTAGTTCTTGA
gi|7 : tgtTTGAGGCACCAGATTTTCTGGA-AATTCCTTCAGTATTGAAGG-------------T-CGAT-TATCTGTTGCTCATT----T-CATATTCAC--CAAAGAA-----CTGCTTCGTTGT-GGTTTCATACTACTttttta
gi|9 : AGGCGCCAGACTTTCTGGCTA-TTCCTTCAGTATCGTAGG-------T-TA-AT-T-AT-C---TGTTGCTCATT----T-TATATTCAC--CAAAGAA-----CTGCTTCCTCAT-GGTTTCATACTACc
gi|4 : GC-A-ACTCTTTAGGGTGGTAG-----TTGTGTA-GTCTGA--AA-ACGTAGCTCATTA---T-C-TATGCACGGCTTAA-------TTCCTTCGT-AT-CATTTCAAACTAATCGAGAGAAAGTAGTTaag
gi|14 : gagtcgccagaagg-A-CCTGTTG-GTATCGTAGG-------------T-TGATTAC-CTGTTGCTCATT----T-CATATTCAC--CAAAGAA-----CTGCTTCCTCAT-GGTTTCATACTACTCAAGA
gi|11 : tTACTTTAGGATG-GTATATA--C-TGA---A-ATAGAGCTTATT----T-GATATGCAT--CCTCTAG-----CTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTT
gi|10 : agcTACTTTAGGATG-GTATATA--C-TGA---A-ATAGAGCTTATT----T-GATATGCAT--CCTCTAG-----CTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTTt
gi|12 : agcTAGGATG-GT-TAT--GC-TGA--AA-ATGGAGCTCATT----T-CATGTGCAC--CCTTTTA-----CTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAAATGAGTTTTt
gi|17 : atcttTAAGATGGTT-TATA--C-TGA--AA-ATGGAGCTTATA----T-CATTTGCAC--TCTTTAA-----CTGCTTCCTAAT-CGTTTCAAATTA
gi|6 : ctcatT-TGTATAT-TGA--AA-ATGTAACTCATT----T-CATATGCAC--TTATTAA-----CTATTTCATAAT-AGTTTTAAACTACTCAAGAGATAGAAGTT
gi|8 : gcctggcgacgctttaggataatagagag-TGA--AA-ATGTATCTCATA----C-CATATGCAC--CCATTTA-----CTACTTCCTTTTGGGTTTCAAACTACtg
gi|1 : ttttgtcaggccttcaggctattctttaggtgttagatatgtcttcA-ATGTAGCTCATTATAATGTATATGCAC--C-----ACTTTTCTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAGAGGAATTCATGA
gi|18 : ttacttagacggtctggcgactcttttggcataacagttgcaatctctaatgccattcgtcaatTGTTGCTCATT----T-CATATTTAC--CAAAGAA-----CTGCTTCCTAAT-GGTTTCATATTAC
gi|15 : gtaggctaattttcGCTCATT----T-CATATTCAC--CAAAGAA-----CTGTTTCATCAT-GGTTTTATACTACaag
gi|16 : ttcagtatcgtaggttaattatcttttTCTTAAT-TGTTTCAAACTACTCAAGAGGAAGTAGaag
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTAAATCGCTCAGAAGGTCTGGTGAATCTTAGGTATCGTAAATAGAGTAAACTGAAAATCTCCATGTGACTTATCAATAATGTAGCTCACTAAATACAACTTTACTGCTTCCTCA
Unaligned ( gi|13 ): TTTTGAGTCGCCATTTAGGTTGGTAGTTGTTTCTATAAATCGAAAATATAGGGCATTATATATGCGCCGCTTAACTACTTTCCCATCGT
Unaligned ( gi|19 ): TGAAATGCTGGAATCGTCTCTGCTAATTGGTCCAATCTACTCAAGAGAAAGTAGT
Alignments
lowQualScore : 1 444444444444444444444
lowQualScore : 4 6 0 1 555 1 4 2 000000000000000000000 4 8888 2 8888 1 44 0 1
lowQualScore : . . . . ... . . . ..................... . .... . .... . .. . .
lowQualScore : 0 7 3 4 999 1 4 9 222222222222222222222 9 3333 7 5555 1 22 1 6
consensus : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATG--TT-GTA-AT-T-GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
Reference ( family-3058 ) : TTTTTGAGGCGCCAGATTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATG--TT-GTA-GT-T-GA-AAATGTAGCTCATT----T-CATATGCACCNANNAACTGCTTCCTAAT-NGTTTCAAACTACTCGAGAGAAAGTAGTTCTTGA
gi|1 : AATGTAGCTCATTATAATGTATATGCACCACTTTTCTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAGAGGAATTCATGA
gi|10 : ttacttagacggtctggcgactcttttggcataacagttgcaatctctaatgccattcgtcaatTAGG-ATG--GT-ATATAC-T-GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTT
gi|11 : agctacttTAGG-ATG--GT-ATATAC-T-GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTTt
gi|12 : agctacttTAGG-ATGG-TT-AT--GC-T-GA-AAATGGAGCTCATT----T-CATGTGCACCCTTTTACTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAAATGAGTTTTt
gi|14 : atcttG-TATCGTAGG------TT-G---AT-T----ACCTGTTGCTCATT----T-CATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTACTCAAGA
gi|15 : tacctgttgTTCAG-TATCGTAGG-------T--TA-AT-T----ATCTTTTGCTCATT----T-CATATTCACCAAAGAACTGTTTCATCAT-GGTTTTATACTAC
gi|16 : TCTTAAT-TGTTTCAAACTACTCAAGAGGAAGTAGaag
gi|17 : tatactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAG-ATGGTTT-ATA--C-T-GA-AAATGGAGCTTATA----T-CATTTGCACTCTTTAACTGCTTCCTAAT-CGTTTCAAATTAc
gi|18 : ctcatTGTTGCTCATT----T-CATATTTACCAAAGAACTGCTTCCTAAT-GGTTTCATATTAC
gi|19 : gtaggctaattttcCTAAT-TGGTCCAATCTACTCAAGAGAAAGTAGTaag
gi|2 : tgaaatgctggaatcgtctctgTTATTAAGGCCCCAGACTTTCCAGC-A-TCTCTTGAG-TACCGTAGG-ATG--TTTGTA-GT-T-GATAAATGTAGCTCATT----T-CATATGCACCCAAAAACTGCTTCCTCAT-GGTTTGAAACTACTTAAGAGAAAGTAGTTCTTGA
gi|3 : TTTTTGAGGTACTAAATTTTCTGGC-A-TCTCATTAG-TATCGTAGG-ATG--TTGGTA-GT-TGGA-AAATTTAGCTCATT----T-CGTTTGCA------ATCT-CTT---------------ACTGCTCAAGAGAAAGTAGTTCTTGA
gi|4 : tgtGAGTCGCCAGA----AGGGC-A-ACTCTTTAG-GGTGGTAGT--TG--T--GTA-GTCT-GA-AAACGTAGCTCATTA---T-C-TATGCACGGCTTAATTCCTTCGTA-T-CATTTCAAACTAATCGAGAGAAAGTAGTTttttta
gi|6 : CTGGC-G-ACGCTTTAG-GATAATAGA-GAG--TT-GTATAT-T-GA-AAATGTAACTCATT----T-CATATGCACTTATTAACTATTTCATAAT-AGTTTTAAACTACTCAAGAGATAGAAGTT
gi|7 : gcTTGAGGCACCAGATTTTCTGGA-AATTCCTTCAG-TATTGAAGG-TCGA-TT-ATC------------TGTTGCTCATT----T-CATATTCACCAAAGAACTGCTTCGTTGT-GGTTTCATACTACTCtg
gi|8 : GTCAGGCCTTCAGGCTA-T-TCTTTAGGTGT--TAGATATG--TC-TT---C-T-GA-AAATGTATCTCATA----C-CATATGCACCCATTTACTACTTCCTTTTGGGTTTCAAACTAC
gi|9 : ttttAGGCGCCAGACTTTCTGGCTA-TTCCTTCAG-TATCGTAGG-------T--TA-AT-T----ATCTGTTGCTCATT----T-TATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTAAATCGCTCAGAAGGTCTGGTGAATCTTAGGTATCGTAAATAGAGTAAACTGAAAATCTCCATGTGACTTATCAATAATGTAGCTCACTAAATACAACTTTACTGCTTCCTCA
Unaligned ( gi|13 ): TTTTGAGTCGCCATTTAGGTTGGTAGTTGTTTCTATAAATCGAAAATATAGGGCATTATATATGCGCCGCTTAACTACTTTCCCATCGT
Alignments
lowQualScore : 1 33333333333333333333
lowQualScore : 1 0 1 555 1 4 2 66666666666666666666 4 8888 2 8888 4 44 0
lowQualScore : . . . ... . . . .................... . .... . .... . .. .
lowQualScore : 0 3 4 999 1 4 9 77777777777777777777 9 3333 7 9999 0 22 1
consensus : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATGTT-GTA-AT--T-GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
Reference ( family-3058 ) : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATGTT-GTA-AT--T-GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
gi|1 : AATGTAGCTCATTATAATGTATATGCACCACTTTTCTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAGAGGAATTCATGA
gi|10 : ttacttagacggtctggcgactcttttggcataacagttgcaatctctaatgccattcgtcaatTAGG-ATGGT-ATATAC--T-GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTT
gi|11 : agctacttTAGG-ATGGT-ATATAC--T-GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTTt
gi|12 : agctacttTAGG-ATG---GTT-ATGCT-GA-AAATGGAGCTCATT----T-CATGTGCACCCTTTTACTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAAATGAGTTTTt
gi|14 : atcttG-TATCGTAGG----TT-G---AT--T----ACCTGTTGCTCATT----T-CATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTACTCAAGA
gi|15 : tacctgttgTTCAG-TATCGTAGG-----T--TA-AT--T----ATCTTTTGCTCATT----T-CATATTCACCAAAGAACTGTTTCATCAT-GGTTTTATACTAC
gi|16 : TCTTAAT-TGTTTCAAACTACTCAAGAGGAAGTAGaag
gi|17 : tatactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAG-ATGGT-TTATAC--T-GA-AAATGGAGCTTATA----T-CATTTGCACTCTTTAACTGCTTCCTAAT-CGTTTCAAATTAc
gi|18 : ctcatTGTTGCTCATT----T-CATATTTACCAAAGAACTGCTTCCTAAT-GGTTTCATATTAC
gi|19 : gtaggctaattttcCTAAT-TGGTCCAATCTACTCAAGAGAAAGTAGTaag
gi|2 : tgaaatgctggaatcgtctctgTTATTAAGGCCCCAGACTTTCCAGC-A-TCTCTTGAG-TACCGTAGG-ATGTTTGTA-GT--T-GATAAATGTAGCTCATT----T-CATATGCACCCAAAAACTGCTTCCTCAT-GGTTTGAAACTACTTAAGAGAAAGTAGTTCTTGA
gi|3 : TTTTTGAGGTACTAAATTTTCTGGC-A-TCTCATTAG-TATCGTAGG-ATGTTGGTA-GT--TGGA-AAATTTAGCTCATT----T-CGTTTGCA------ATCT-CTT---------------ACTGCTCAAGAGAAAGTAGTTCTTGA
gi|4 : tgtGAGTCGCCAGAAG----GGC-A-ACTCTTTAG-GGTGGTAGT--TGT--GTA-GTC-T-GA-AAACGTAGCTCATTA---T-C-TATGCACGGCTTAATTCCTTCGT-AT-CATTTCAAACTAATCGAGAGAAAGTAGTTttttta
gi|6 : CTGGC-G-ACGCTTTAG-GATAATAGA-GAGTT-GTATAT--T-GA-AAATGTAACTCATT----T-CATATGCACTTATTAACTATTTCATAAT-AGTTTTAAACTACTCAAGAGATAGAAGTT
gi|7 : gcTTGAGGCACCAGATTTTCTGGA-AATTCCTTCAG-TATTGAAGG----TC-G---AT--T----ATCTGTTGCTCATT----T-CATATTCACCAAAGAACTGCTTCGTTGT-GGTTTCATACTACTCtg
gi|8 : GTCAGGCCTTCAGGCTA-T-TCTTTAGGTGT--TAGATATGTC-TT---C--T-GA-AAATGTATCTCATA----C-CATATGCACCCATTTACTACTTCCTTTTGGGTTTCAAACTAC
gi|9 : ttttAGGCGCCAGACTTTCTGGCTA-TTCCTTCAG-TATCGTAGG-----T--TA-AT--T----ATCTGTTGCTCATT----T-TATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTAAATCGCTCAGAAGGTCTGGTGAATCTTAGGTATCGTAAATAGAGTAAACTGAAAATCTCCATGTGACTTATCAATAATGTAGCTCACTAAATACAACTTTACTGCTTCCTCA
Unaligned ( gi|13 ): TTTTGAGTCGCCATTTAGGTTGGTAGTTGTTTCTATAAATCGAAAATATAGGGCATTATATATGCGCCGCTTAACTACTTTCCCATCGT
Alignments
lowQualScore : 1 33333333333333333333
lowQualScore : 1 0 1 555 1 4 2 66666666666666666666 4 8888 2 8888 4 44 0
lowQualScore : . . . ... . . . .................... . .... . .... . .. .
lowQualScore : 0 3 4 999 1 4 9 77777777777777777777 9 3333 7 9999 0 22 1
consensus : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATGTT-GTA-AT--T-GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
Reference ( family-3058 ) : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATGTT-GTA-AT--T-GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
gi|1 : AATGTAGCTCATTATAATGTATATGCACCACTTTTCTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAGAGGAATTCATGA
gi|10 : ttacttagacggtctggcgactcttttggcataacagttgcaatctctaatgccattcgtcaatTAGG-ATGGT-ATATAC--T-GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTT
gi|11 : agctacttTAGG-ATGGT-ATATAC--T-GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTTt
gi|12 : agctacttTAGG-ATG---GTT-ATGCT-GA-AAATGGAGCTCATT----T-CATGTGCACCCTTTTACTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAAATGAGTTTTt
gi|14 : atcttG-TATCGTAGG----TT-G---AT--T----ACCTGTTGCTCATT----T-CATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTACTCAAGA
gi|15 : tacctgttgTTCAG-TATCGTAGG-----T--TA-AT--T----ATCTTTTGCTCATT----T-CATATTCACCAAAGAACTGTTTCATCAT-GGTTTTATACTAC
gi|16 : TCTTAAT-TGTTTCAAACTACTCAAGAGGAAGTAGaag
gi|17 : tatactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAG-ATGGT-TTATAC--T-GA-AAATGGAGCTTATA----T-CATTTGCACTCTTTAACTGCTTCCTAAT-CGTTTCAAATTAc
gi|18 : ctcatTGTTGCTCATT----T-CATATTTACCAAAGAACTGCTTCCTAAT-GGTTTCATATTAC
gi|19 : gtaggctaattttcCTAAT-TGGTCCAATCTACTCAAGAGAAAGTAGTaag
gi|2 : tgaaatgctggaatcgtctctgTTATTAAGGCCCCAGACTTTCCAGC-A-TCTCTTGAG-TACCGTAGG-ATGTTTGTA-GT--T-GATAAATGTAGCTCATT----T-CATATGCACCCAAAAACTGCTTCCTCAT-GGTTTGAAACTACTTAAGAGAAAGTAGTTCTTGA
gi|3 : TTTTTGAGGTACTAAATTTTCTGGC-A-TCTCATTAG-TATCGTAGG-ATGTTGGTA-GT--TGGA-AAATTTAGCTCATT----T-CGTTTGCA------ATCT-CTT---------------ACTGCTCAAGAGAAAGTAGTTCTTGA
gi|4 : tgtGAGTCGCCAGAAG----GGC-A-ACTCTTTAG-GGTGGTAGT--TGT--GTA-GTC-T-GA-AAACGTAGCTCATTA---T-C-TATGCACGGCTTAATTCCTTCGT-AT-CATTTCAAACTAATCGAGAGAAAGTAGTTttttta
gi|6 : CTGGC-G-ACGCTTTAG-GATAATAGA-GAGTT-GTATAT--T-GA-AAATGTAACTCATT----T-CATATGCACTTATTAACTATTTCATAAT-AGTTTTAAACTACTCAAGAGATAGAAGTT
gi|7 : gcTTGAGGCACCAGATTTTCTGGA-AATTCCTTCAG-TATTGAAGG----TC-G---AT--T----ATCTGTTGCTCATT----T-CATATTCACCAAAGAACTGCTTCGTTGT-GGTTTCATACTACTCtg
gi|8 : GTCAGGCCTTCAGGCTA-T-TCTTTAGGTGT--TAGATATGTC-TT---C--T-GA-AAATGTATCTCATA----C-CATATGCACCCATTTACTACTTCCTTTTGGGTTTCAAACTAC
gi|9 : ttttAGGCGCCAGACTTTCTGGCTA-TTCCTTCAG-TATCGTAGG-----T--TA-AT--T----ATCTGTTGCTCATT----T-TATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTAC
blockSeqs : T T ATT G G C ATGTTTGTAGTTGAT A A . CTCT A GG
blockSeqs : T TC T . C ATGTTGGTAGTTGGA C . . CTCT A T
blockSeqs : . AC T . C ATGGTATATACTGA C . . CTTT A T
blockSeqs : . AC T . G ATGGTTTATACTGA A . . AAAG C T
blockSeqs : . TT C . A GAGTTGTATATTGA A . . AAAG C G
blockSeqs : . T T . T ATGGTTATGCTGA A . . CTTT A G
blockSeqs : C . C TGTGTAGTCTGA A . . AAAG A T
blockSeqs : . . TATGTCTTCTGA A . . CAAA A C
blockSeqs : TTGATT C . . GCTT A G
blockSeqs : TTAATT A . . TATT C T
blockSeqs : TCGATT C . . AAAG A G
blockSeqs : TTAATT . . . CATT T C
blockSeqs : . . . AAAG T A
blockSeqs : . . . C G
blockSeqs : . G
blockSeqs : . .
blockSeqCons : ATGTTTATACTGA******* ****
originalCons : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATGTT-GTA-AT--T-GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
finalCons : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGGATGTTTATACTGA-------AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTAAATCGCTCAGAAGGTCTGGTGAATCTTAGGTATCGTAAATAGAGTAAACTGAAAATCTCCATGTGACTTATCAATAATGTAGCTCACTAAATACAACTTTACTGCTTCCTCA
Unaligned ( gi|13 ): TTTTGAGTCGCCATTTAGGTTGGTAGTTGTTTCTATAAATCGAAAATATAGGGCATTATATATGCGCCGCTTAACTACTTTCCCATCGT
Alignments
lowQualScore : 1 1111 11
lowQualScore : 1 0 1 555 1 4 2 77 0000 44 33 77777 0 1 7777 2 8888 4 44 0
lowQualScore : . . . ... . . . .. .... .. .. ..... . . .... . .... . .. .
lowQualScore : 0 3 4 999 1 4 9 00 2222 33 99 33333 5 2 8888 5 6666 0 22 1
consensus : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATG-NT-TATA-CT--GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
Reference ( family-3058 ) : TTNTTGAGGCGCCAGACTTTCTGGC-A-TCTCTTCAG-TATCGTAGG-ATG-TT-TATA-CT--GA-AAATGTAGCTCATT----T-CATATGCACCNANTAACTGCTTCCTAAT-NGTTTCAAACTACTCAAGAGAAAGTAGTTCTTGA
gi|1 : AATGTAGCTCATTATAATGTATATGCACCACTTTTCTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAGAGGAATTCATGA
gi|10 : ttacttagacggtctggcgactcttttggcataacagttgcaatctctaatgccattcgtcaatTAGG-ATG-GTATATA-CT--GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTT
gi|11 : agctacttTAGG-ATG-GTATATA-CT--GA-AA-TAGAGCTTATT----T-GATATGCATCCTCTAGCTGCTTCCTAAT-TGTTCCAAACTACTCGAGAGAAAGTAGTTt
gi|12 : agctacttTAGG-ATG-GT-TATG-CT--GA-AAATGGAGCTCATT----T-CATGTGCACCCTTTTACTGCTTCCTAAT-TGTTTCAAACTACTCAAGAGAAATGAGTTTTt
gi|14 : atcttG-TATCGTAGG-TTG-AT-TAC--CT--G-------TTGCTCATT----T-CATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTACTCAAGA
gi|15 : tacctgttgTTCAG-TATCGTAGG-TTA-AT-TAT--CT--------TTT-GCTCATT----T-CATATTCACCAAAGAACTGTTTCATCAT-GGTTTTATACTAC
gi|16 : -TATA-CT--GA-NNNNNNNNNNNNNN----N-NNNNNNNNNNNNNNNNNNNNNTCTTAAT-TGTTTCAAACTACTCAAGAGGAAGTAGaag
gi|17 : TAAG-ATGGTT-TATA-CT--GA-AAATGGAGCTTATA----T-CATTTGCACTCTTTAACTGCTTCCTAAT-CGTTTCAAATTAc
gi|18 : ctcatTGTTGCTCATT----T-CATATTTACCAAAGAACTGCTTCCTAAT-GGTTTCATATTAC
gi|19 : gtaggctaattttcCTAAT-TGGTCCAATCTACTCAAGAGAAAGTAGTaag
gi|2 : tgaaatgctggaatcgtctctgTTATTAAGGCCCCAGACTTTCCAGC-A-TCTCTTGAG-TACCGTAGG-ATG-TT-TGTAGTT--GATAAATGTAGCTCATT----T-CATATGCACCCAAAAACTGCTTCCTCAT-GGTTTGAAACTACTTAAGAGAAAGTAGTTCTTGA
gi|3 : TTTTTGAGGTACTAAATTTTCTGGC-A-TCTCATTAG-TATCGTAGG-ATG-TT-GGTA-GTTGGA-AAATTTAGCTCATT----T-CGTTTGCA------ATCT-CTT---------------ACTGCTCAAGAGAAAGTAGTTCTTGA
gi|4 : tgtGAGTCGCCAGAAG----GGC-A-ACTCTTTAG-GGTGGTAGT--TG-TG-TAGT-CT--GA-AAACGTAGCTCATTA---T-C-TATGCACGGCTTAATTCCTTCGT-AT-CATTTCAAACTAATCGAGAGAAAGTAGTTttttta
gi|6 : CTGGC-G-ACGCTTTAG-GATAATAGA-GAG-TTGTATA-TT--GA-AAATGTAACTCATT----T-CATATGCACTTATTAACTATTTCATAAT-AGTTTTAAACTACTCAAGAGATAGAAGTT
gi|7 : gcTTGAGGCACCAGATTTTCTGGA-AATTCCTTCAG-TATTGAAGG-TCG-AT-TAT--CT--G-------TTGCTCATT----T-CATATTCACCAAAGAACTGCTTCGTTGT-GGTTTCATACTACTCtg
gi|8 : GTCAGGCCTTCAGGCTA-T-TCTTTAGGTGT--TAGATATG-TC-T-T--CT--GA-AAATGTATCTCATA----C-CATATGCACCCATTTACTACTTCCTTTTGGGTTTCAAACTAC
gi|9 : ttttAGGCGCCAGACTTTCTGGCTA-TTCCTTCAG-TATCGTAGG-TTA-AT-TAT--CT--G-------TTGCTCATT----T-TATATTCACCAAAGAACTGCTTCCTCAT-GGTTTCATACTAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTAAATCGCTCAGAAGGTCTGGTGAATCTTAGGTATCGTAAATAGAGTAAACTGAAAATCTCCATGTGACTTATCAATAATGTAGCTCACTAAATACAACTTTACTGCTTCCTCA
Unaligned ( gi|13 ): TTTTGAGTCGCCATTTAGGTTGGTAGTTGTTTCTATAAATCGAAAATATAGGGCATTATATATGCGCCGCTTAACTACTTTCCCATCGT