lowQualScore : 33 333333333 22222222 22222 1 1 1
lowQualScore : 44 4 111111111 5 2 1 66666666 0 1 3 888 22 6 1 5 5 99999 5 0 2 66 4 5 5 6 7 44
lowQualScore : .. . ......... . . . ........ . . . ... .. . . . . ..... . . . .. . . . . . ..
lowQualScore : 00 0 333333333 7 1 9 99999999 7 7 0 111 33 0 2 0 0 22222 0 2 0 99 1 3 3 6 0 22
consensus : TTACAAGTTTCNAGT-T-------CTAATG-TNAATCACTCTCGCG---TCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTTTTGCAGTTAATA-A-GAGG--CAATCAAATTCCTGGCTGGGAGGGG--CTCGAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
Reference ( gi|3 ) : TTACAAGAATCAAGT-T-------CTAATG-TAAATCACTCCCGTG---TCCGCTTCCTGGGTAGAAAACAATATTTAAGAGTTTTTGCAGTTGATA-A-GAGG--CTTTCAAATTGCTGGCCGAGAGGGG--CTCGAACCGTCGACTTTCGAAATGTAGATTCCTGAATCCACTTTAATATAGCCAGG--GTACGCGCCTG
gi|7 : TTACAAGTTTCTAGA-G-------CTAATT-TATATCACTCGCA------CTGCTTCCTGAATAGAAAACAATACTTAAGAATTTTTGCAGTTAATA-A-GAGG--CAATCAAATTCCTTAATGCGAGGGA--CTCGACATGGCAATTTTCAAATCATAGA-TGCTGAATCTACTTCAATATAGCC
gi|11 : taTTACAAGTTTCTAGT-G-------CTAATG-TAAATCATTCTTGCG---TCCGCT-------------ACAATACTAAAGAATTTTTGCAGTTAAAA-A-GAGG--CAATCAAATT
gi|1 : ACAAGTTTCTAGA-G-------CTAATG-TTAATTCCTTTTTTAA--TCCGCTTCCTGTGTACAAAACAAT
gi|2 : ttataTCAAGT-TTCTAGAACTAATG-TAAATCTGTCTCGCA---TCCGCTTCCTGGATAGAAAACAATAATTAAGAGTTTTTGCTGTTAATATATAAGG--CAATCAAATTCCTGGCTTGGAGGGG--CTCGAACCGGCTACTTTCGGAACGTATATTCCTGAATCCACTTCAATGTAGCCTGA--GTACGCGCCTGgccagtgactttattgttcatatgtctctgacaatactaaagaaattttgcagttagctagagacaaacaaattcctggatgaaaaggctcgaaccggcgacttttggaacgtagattct
gi|6 : gttCAAGTCT-------CTAGTG-CTAATCTCTCACGCG---TCCTCTTCCTGGGTAGAAAATAATACTAAAGGGTTTTTGCAATTAAAA-A-GAGG--CAATCAAATTCCTATCCGAGAGGGGCTCTCGGGCCGGCG-------------AGATTCCTGAATCCAC---AATAAAGCCTGG--GTACGCGCCTG
gi|10 : caaacttaCAAGT-TT------CTAGTGCTAAATCACT--TGTGAGCTAC-CTTCCTGTGCAGAAACCAATACATA-----------AGTTAACA-A-GAGGAAATTT--AATTCTTGCCCAAAAGGAG--CTCAAACCCCCAACTTTCAGAATGT
gi|5 : aaAGT-T-------T--ATG-CTAGTCACTCTCGAA---TCCGTTATCTGGGTAGAAAACA-TACTAAAGAGAATTTGCAGTTAATA-A-GAGG--CAGTTAAATTCCTTGCTTGGAGAGG--CTTGAACCGGTGATTTTCGGAACGTAGATTCCTGAATCCTCTTCAGTATAGCCTGG--GTACGCGCC
gi|1 : acaaatttctagACAATACTAAAGAAATTTTGCAGTTAGCT-A-GAGA--CAAACAAATTCCTGGATGAAAAGG---CTCGAACCGGCGACTTTTGGAACGTAGATTC
gi|4 : ttataacaagtttctagagctaatgttaattccttttttaatccgcttcctgtgtacaaaacaatgccagtgactttattgttcatatgtctctgCAGTTAATA-A-CAGG--TAATTAAATTCCTGACTGAGAGGGG--GTCGAACGGGCGACTTTCGGAACTAAGATACCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTGt
gi|13 : ttacaagcttctattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAAATTCCTGGTTGGGATGGG--CTCTAACCGACGATTTTCGGAACGTAAATTCCTAA
gi|12 : GGCTTTTGGAACATAGATTTCTGAATCCACTTCAATATAGCCTGG--GTACGCACCTG
gi|15 : cggtGTAGATACCTAAATTCACTTCAATATAGCCTGGATGTAAGCGc
gi|19 : AGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTGta
gi|18 : AGATTCATGAATCCACTTCAATATAGCCTGG--ATACGCGCCTG
gi|16 : AGGTTCGTGAATTCACTTCAATATAGCCTGA--GTACGCGCCTGc
gi|14 : AGATTTCTGAATCCACTTCAATACAGTCTGT--GTACGCGCCTGta
gi|21 : TTCCTTAATCCACTTCAATATAGCCTGG--ATACGCGCCTGga
gi|20 : TTCCTGAATCCACTACAATATAGCCTTG--GTACGCGCCTG
gi|17 : TCCTGAATCCACTTCAATATAGCCTGG--GCACGTGCCTGt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): AAGTTTCTGGAGCTAACGTAAATCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAC
Unaligned ( gi|9 ): TGGCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
Alignments
lowQualScore : 11
lowQualScore : 1 33 77 0 4 0 4 0 1 1 0 4 0 4 4 2 66 33
lowQualScore : . .. .. . . . . . . . . . . . . . .. ..
lowQualScore : 0 66 22 3 8 3 4 4 3 0 9 0 1 4 4 9 11 99
consensus : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGCG-TCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
Reference ( family-2996 ) : TTACAAGTTTCNAGTTCTAATGTNAATCACTCTCGCG-TCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCTGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
gi|1 : ACAAGTTTCTAGAGCTAATGTTAATTCCTTTTTTAATCCGCTTCCTGTGTACAAAACAATGCCAGTGACTTTATTG
gi|1 : ttataACAATACTAAAGAAATT-TTGCAGTTAGCT-A-GAGACAAACAAATTCCTGGAT-GAAAAGGCTC--GAACCGGCGACTTTTGGAACGTAGATTCttcatatgtctctgacaatactaaagaaattttgcagttagctagagacaaacaaattcctggatgaaaaggctcgaaccggcgacttttggaacgtagattct
gi|10 : ttataacaagtttctagagctaatgttaattccttttttaatccgcttcctgtgtacaaaacaatgccagtgactttattgttcatatgtctctgACAAGTTTCTAGTGCTAA-----ATCACTTGTGAG-CTACCTTCCTGTGCAGAAACCAATACATA------------AGTTAACA-A-GAGGAAATTTAATTCTTGCCCAAAAGGAGCTC--AAACCCCCAACTTTCAGAATGTt
gi|11 : aTTACAAGTTTCTAGTGCTAATGTAAATCATTCTTGCG-TCCGCT-------------ACAATACTAAAGAATTT-TTGCAGTTAAAA-A-GAGGCAATCAAATT
gi|12 : CGGTGGCTTTTGGAACATAGATTTCTGAATCCACTTCAATATAGCCTGG--GTACGCACCTG
gi|13 : TCAAATTCCTGGTTGGGATGGGCTC--TAACCGACGATTTTCGGAACGTAAATTCCTAAc
gi|14 : AGATTTCTGAATCCACTTCAATACAGTCTGT--GTACGCGCCTG
gi|15 : GTAGATACCTAAATTCACTTCAATATAGCCTGGATGTAAGCGga
gi|16 : AGGTTCGTGAATTCACTTCAATATAGCCTGA--GTACGCGCCTGta
gi|17 : TCCTGAATCCACTTCAATATAGCCTGG--GCACGTGCCTGta
gi|18 : tacagAGATTCATGAATCCACTTCAATATAGCCTGG--ATACGCGCCTGg
gi|19 : AGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTGc
gi|2 : TTTCAAGTTTCTAGAACTAATGTAAATCTGTCTCGCA-TCCGCTTCCTGGATAGAAAACAATAATTAAGAGTTT-TTGCTGTTAATATATAAGGCAATCAAATTCCTGGCTTGGAGGGGCTC--GAACCGGCTACTTTCGGAACGTATATTCCTGAATCCACTTCAATGTAGCCTGA--GTACGCGCCTG
gi|20 : gTTCCTGAATCCACTACAATATAGCCTTG--GTACGCGCCTG
gi|21 : TTCCTTAATCCACTTCAATATAGCCTGG--ATACGCGCCTGt
gi|3 : TTACAAGAATCAAGTTCTAATGTAAATCACTCCCGTG-TCCGCTTCCTGGGTAGAAAACAATATTTAAGAGTTT-TTGCAGTTGATA-A-GAGGCTTTCAAATTGCTGGCCGAGAGGGGCTC--GAACCGTCGACTTTCGAAATGTAGATTCCTGAATCCACTTTAATATAGCCAGG--GTACGCGCCTG
gi|4 : TTACAAGCTTCTATTNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNCAGTTAATA-A-CAGGTAATTAAATTCCTGACTGAGAGGGGGTC--GAACGGGCGACTTTCGGAACTAAGATACCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
gi|5 : ACAAATTTCTAGAGTTTATGCTAGTCACTCTCGAA-TCCGTTATCTGGGTAGAAAACA-TACTAAAGAGAAT-TTGCAGTTAATA-A-GAGGCAGTTAAATTCCTTGCTTGGAGAGGCTT--GAACCGGTGATTTTCGGAACGTAGATTCCTGAATCCTCTTCAGTATAGCCTGG--GTACGCGCC
gi|6 : TTACAAGTCTCTAGTGCTAATCT------CTCACGCG-TCCTCTTCCTGGGTAGAAAATAATACTAAAGGGTTT-TTGCAATTAAAA-A-GAGGCAATCAAATTCCTATCCGAGAGGGGCTCTCGGGCCGGCGA-------------GATTCCTGAATCCAC---AATAAAGCCTGG--GTACGCGCCTG
gi|7 : caaacTTACAAGTTTCTAGAGCTAATTTATATCACTC--GCA--CTGCTTCCTGAATAGAAAACAATACTTAAGAATTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTTAATGCGAGGGACTC--GACATGGCAATTTTCAAATCATAGA-TGCTGAATCTACTTCAATATAGCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAGTTTCTGGAGCTAACGTAAATCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAC
Unaligned ( gi|9 ): TGGCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
Alignments
lowQualScore : 1 4 5 55 0 1 1 0 4 1 5 5 4 66 0 44
lowQualScore : . . . .. . . . . . . . . . .. . ..
lowQualScore : 0 9 2 22 4 4 0 9 4 2 0 0 5 99 9 22
consensus : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
Reference ( family-2996 ) : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
gi|1 : ACAAGTTTCTAGAGCTAATGTTAATTCCTTTTTTAATCCGCTTCCTGTGTACAAAACAATGCCAGTGACTTTATTG
gi|1 : ttataACAATACTAAAGAAATT-TTGCAGTTAGCT-A-GAGACAAACAAATTCCTGGAT-GAAAAGGCTC--GAACCGGCGACTTTTGGAACGTAGATTCttcatatgtctctgacaatactaaagaaattttgcagttagctagagacaaacaaattcctggatgaaaaggctcgaaccggcgacttttggaacgtagattct
gi|10 : ttataacaagtttctagagctaatgttaattccttttttaatccgcttcctgtgtacaaaacaatgccagtgactttattgttcatatgtctctgACAAGTTTCTAGTGCTAA-----ATCACTTGTGA-GCTACCTTCCTGTGCAGAAACCAATACATA------------AGTTAACA-A-GAGGAAATTTAATTCTTGCCCAAAAGGAGCTC--AAACCCCCAACTTTCAGAATGTt
gi|11 : aTTACAAGTTTCTAGTGCTAATGTAAATCATTCTTGC-GTCCGCT-------------ACAATACTAAAGAATTT-TTGCAGTTAAAA-A-GAGGCAATCAAATT
gi|12 : CGGTGGCTTTTGGAACATAGATTTCTGAATCCACTTCAATATAGCCTGG--GTACGCACCTG
gi|13 : TCAAATTCCTGGTTGGGATGGGCTC--TAACCGACGATTTTCGGAACGTAAATTCCTAAc
gi|14 : AGATTTCTGAATCCACTTCAATACAGTCTGT--GTACGCGCCTG
gi|15 : GTAGATACCTAAATTCACTTCAATATAGCCTGGATGTAAGCGga
gi|16 : AGGTTCGTGAATTCACTTCAATATAGCCTGA--GTACGCGCCTGta
gi|17 : TCCTGAATCCACTTCAATATAGCCTGG--GCACGTGCCTGta
gi|18 : tacagAGATTCATGAATCCACTTCAATATAGCCTGG--ATACGCGCCTGg
gi|19 : AGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTGc
gi|2 : TTTCAAGTTTCTAGAACTAATGTAAATCTGTCTCGC-ATCCGCTTCCTGGATAGAAAACAATAATTAAGAGTTT-TTGCTGTTAATATATAAGGCAATCAAATTCCTGGCTTGGAGGGGCTC--GAACCGGCTACTTTCGGAACGTATATTCCTGAATCCACTTCAATGTAGCCTGA--GTACGCGCCTG
gi|20 : gTTCCTGAATCCACTACAATATAGCCTTG--GTACGCGCCTG
gi|21 : TTCCTTAATCCACTTCAATATAGCCTGG--ATACGCGCCTGt
gi|3 : TTACAAGAATCAAGTTCTAATGTAAATCACTCCCGT-GTCCGCTTCCTGGGTAGAAAACAATATTTAAGAGTTT-TTGCAGTTGATA-A-GAGGCTTTCAAATTGCTGGCCGAGAGGGGCTC--GAACCGTCGACTTTCGAAATGTAGATTCCTGAATCCACTTTAATATAGCCAGG--GTACGCGCCTG
gi|5 : ACAAATTTCTAGAGTTTATGCTAGTCACTCTCGA-ATCCGTTATCTGGGTAGAAAACA-TACTAAAGAGAAT-TTGCAGTTAATA-A-GAGGCAGTTAAATTCCTTGCTTGGAGAGGCTT--GAACCGGTGATTTTCGGAACGTAGATTCCTGAATCCTCTTCAGTATAGCCTGG--GTACGCGCC
gi|6 : TTACAAGTCTCTAGTGCTAATCT------CTCACGC-GTCCTCTTCCTGGGTAGAAAATAATACTAAAGGGTTT-TTGCAATTAAAA-A-GAGGCAATCAAATTCCTATCCGAGAGGGGCTCTCGGGCCGGCGA-------------GATTCCTGAATCCAC---AATAAAGCCTGG--GTACGCGCCTG
gi|7 : caaacTTACAAGTTTCTAGAGCTAATTTATATCACTC--GC-A-CTGCTTCCTGAATAGAAAACAATACTTAAGAATTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTTAATGCGAGGGACTC--GACATGGCAATTTTCAAATCATAGA-TGCTGAATCTACTTCAATATAGCC
gi|8 : taAAGTTTCTGGAGCTAACGTAAATCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTACAAGCTTCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTAATAACAGGTAATTAAATTCCTGACTGAGAGGGGGTCGAACGGGCGACTTTCGGAACTAAGATACCTGAATCCACTTCAATATAGCCTGGGTACGCGCCTG
Unaligned ( gi|9 ): TGGCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
Alignments
lowQualScore : 1 4 5 55 0 1 1 0 4 1 5 5 4 66 0 44
lowQualScore : . . . .. . . . . . . . . . .. . ..
lowQualScore : 0 9 2 22 4 4 0 9 4 2 0 0 5 99 9 22
consensus : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
Reference ( family-2996 ) : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
gi|1 : ACAAGTTTCTAGAGCTAATGTTAATTCCTTTTTTAATCCGCTTCCTGTGTACAAAACAATGCCAGTGACTTTATTG
gi|1 : ttataACAATACTAAAGAAATT-TTGCAGTTAGCT-A-GAGACAAACAAATTCCTGGAT-GAAAAGGCTC--GAACCGGCGACTTTTGGAACGTAGATTCttcatatgtctctgacaatactaaagaaattttgcagttagctagagacaaacaaattcctggatgaaaaggctcgaaccggcgacttttggaacgtagattct
gi|10 : ttataacaagtttctagagctaatgttaattccttttttaatccgcttcctgtgtacaaaacaatgccagtgactttattgttcatatgtctctgACAAGTTTCTAGTGCTAA-----ATCACTTGTGA-GCTACCTTCCTGTGCAGAAACCAATACATA------------AGTTAACA-A-GAGGAAATTTAATTCTTGCCCAAAAGGAGCTC--AAACCCCCAACTTTCAGAATGTt
gi|11 : aTTACAAGTTTCTAGTGCTAATGTAAATCATTCTTGC-GTCCGCT-------------ACAATACTAAAGAATTT-TTGCAGTTAAAA-A-GAGGCAATCAAATT
gi|12 : CGGTGGCTTTTGGAACATAGATTTCTGAATCCACTTCAATATAGCCTGG--GTACGCACCTG
gi|13 : TCAAATTCCTGGTTGGGATGGGCTC--TAACCGACGATTTTCGGAACGTAAATTCCTAAc
gi|14 : AGATTTCTGAATCCACTTCAATACAGTCTGT--GTACGCGCCTG
gi|15 : GTAGATACCTAAATTCACTTCAATATAGCCTGGATGTAAGCGga
gi|16 : AGGTTCGTGAATTCACTTCAATATAGCCTGA--GTACGCGCCTGta
gi|17 : TCCTGAATCCACTTCAATATAGCCTGG--GCACGTGCCTGta
gi|18 : tacagAGATTCATGAATCCACTTCAATATAGCCTGG--ATACGCGCCTGg
gi|19 : AGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTGc
gi|2 : TTTCAAGTTTCTAGAACTAATGTAAATCTGTCTCGC-ATCCGCTTCCTGGATAGAAAACAATAATTAAGAGTTT-TTGCTGTTAATATATAAGGCAATCAAATTCCTGGCTTGGAGGGGCTC--GAACCGGCTACTTTCGGAACGTATATTCCTGAATCCACTTCAATGTAGCCTGA--GTACGCGCCTG
gi|20 : gTTCCTGAATCCACTACAATATAGCCTTG--GTACGCGCCTG
gi|21 : TTCCTTAATCCACTTCAATATAGCCTGG--ATACGCGCCTGt
gi|3 : TTACAAGAATCAAGTTCTAATGTAAATCACTCCCGT-GTCCGCTTCCTGGGTAGAAAACAATATTTAAGAGTTT-TTGCAGTTGATA-A-GAGGCTTTCAAATTGCTGGCCGAGAGGGGCTC--GAACCGTCGACTTTCGAAATGTAGATTCCTGAATCCACTTTAATATAGCCAGG--GTACGCGCCTG
gi|5 : ACAAATTTCTAGAGTTTATGCTAGTCACTCTCGA-ATCCGTTATCTGGGTAGAAAACA-TACTAAAGAGAAT-TTGCAGTTAATA-A-GAGGCAGTTAAATTCCTTGCTTGGAGAGGCTT--GAACCGGTGATTTTCGGAACGTAGATTCCTGAATCCTCTTCAGTATAGCCTGG--GTACGCGCC
gi|6 : TTACAAGTCTCTAGTGCTAATCT------CTCACGC-GTCCTCTTCCTGGGTAGAAAATAATACTAAAGGGTTT-TTGCAATTAAAA-A-GAGGCAATCAAATTCCTATCCGAGAGGGGCTCTCGGGCCGGCGA-------------GATTCCTGAATCCAC---AATAAAGCCTGG--GTACGCGCCTG
gi|7 : caaacTTACAAGTTTCTAGAGCTAATTTATATCACTC--GC-A-CTGCTTCCTGAATAGAAAACAATACTTAAGAATTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTTAATGCGAGGGACTC--GACATGGCAATTTTCAAATCATAGA-TGCTGAATCTACTTCAATATAGCC
gi|8 : taAAGTTTCTGGAGCTAACGTAAATCA
blockSeqs : T A G A T A . C T T A TC AT
blockSeqs : T A T C G T . A . . G . .
blockSeqs : A A T C G A . T . . T . .
blockSeqs : T T C T G T . T . . G . .
blockSeqs : A A T A G T . T . . T . .
blockSeqs : T A A C A A . A . . G . .
blockSeqs : A . . C . A . T . . G . .
blockSeqs : A . T . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : C*
originalCons : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
finalCons : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTACAAGCTTCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTAATAACAGGTAATTAAATTCCTGACTGAGAGGGGGTCGAACGGGCGACTTTCGGAACTAAGATACCTGAATCCACTTCAATATAGCCTGGGTACGCGCCTG
Unaligned ( gi|9 ): TGGCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
Alignments
lowQualScore : 1 4 5 55 0 1 1 0 4 1 5 5 4 66 0 44
lowQualScore : . . . .. . . . . . . . . . .. . ..
lowQualScore : 0 9 2 22 4 4 0 9 4 2 0 0 5 99 9 22
consensus : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
Reference ( family-2996 ) : TTACAAGTTTCTAGNGCTAATGTAAATCACTCTCGC-GTCCGCTTCCTGGGTAGAAAACAATACTNAAGAGTTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTGGCCGGGAGGGGCTC--GAACCGGCGACTTTCGGAACGTAGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTG
gi|1 : ACAAGTTTCTAGAGCTAATGTTAATTCCTTTTTTAATCCGCTTCCTGTGTACAAAACAATGCCAGTGACTTTATTG
gi|1 : ttataACAATACTAAAGAAATT-TTGCAGTTAGCT-A-GAGACAAACAAATTCCTGGAT-GAAAAGGCTC--GAACCGGCGACTTTTGGAACGTAGATTCttcatatgtctctgacaatactaaagaaattttgcagttagctagagacaaacaaattcctggatgaaaaggctcgaaccggcgacttttggaacgtagattct
gi|10 : ttataacaagtttctagagctaatgttaattccttttttaatccgcttcctgtgtacaaaacaatgccagtgactttattgttcatatgtctctgACAAGTTTCTAGTGCTAA-----ATCACTTGTGA-GCTACCTTCCTGTGCAGAAACCAATACATA------------AGTTAACA-A-GAGGAAATTTAATTCTTGCCCAAAAGGAGCTC--AAACCCCCAACTTTCAGAATGTt
gi|11 : aTTACAAGTTTCTAGTGCTAATGTAAATCATTCTTGC-GTCCGCT-------------ACAATACTAAAGAATTT-TTGCAGTTAAAA-A-GAGGCAATCAAATT
gi|12 : CGGTGGCTTTTGGAACATAGATTTCTGAATCCACTTCAATATAGCCTGG--GTACGCACCTG
gi|13 : TCAAATTCCTGGTTGGGATGGGCTC--TAACCGACGATTTTCGGAACGTAAATTCCTAAc
gi|14 : AGATTTCTGAATCCACTTCAATACAGTCTGT--GTACGCGCCTG
gi|15 : GTAGATACCTAAATTCACTTCAATATAGCCTGGATGTAAGCGga
gi|16 : AGGTTCGTGAATTCACTTCAATATAGCCTGA--GTACGCGCCTGta
gi|17 : TCCTGAATCCACTTCAATATAGCCTGG--GCACGTGCCTGta
gi|18 : tacagAGATTCATGAATCCACTTCAATATAGCCTGG--ATACGCGCCTGg
gi|19 : AGATTCCTGAATCCACTTCAATATAGCCTGG--GTACGCGCCTGc
gi|2 : TTTCAAGTTTCTAGAACTAATGTAAATCTGTCTCGC-ATCCGCTTCCTGGATAGAAAACAATAATTAAGAGTTT-TTGCTGTTAATATATAAGGCAATCAAATTCCTGGCTTGGAGGGGCTC--GAACCGGCTACTTTCGGAACGTATATTCCTGAATCCACTTCAATGTAGCCTGA--GTACGCGCCTG
gi|20 : gTTCCTGAATCCACTACAATATAGCCTTG--GTACGCGCCTG
gi|21 : TTCCTTAATCCACTTCAATATAGCCTGG--ATACGCGCCTGt
gi|3 : TTACAAGAATCAAGTTCTAATGTAAATCACTCCCGT-GTCCGCTTCCTGGGTAGAAAACAATATTTAAGAGTTT-TTGCAGTTGATA-A-GAGGCTTTCAAATTGCTGGCCGAGAGGGGCTC--GAACCGTCGACTTTCGAAATGTAGATTCCTGAATCCACTTTAATATAGCCAGG--GTACGCGCCTG
gi|5 : ACAAATTTCTAGAGTTTATGCTAGTCACTCTCGA-ATCCGTTATCTGGGTAGAAAACA-TACTAAAGAGAAT-TTGCAGTTAATA-A-GAGGCAGTTAAATTCCTTGCTTGGAGAGGCTT--GAACCGGTGATTTTCGGAACGTAGATTCCTGAATCCTCTTCAGTATAGCCTGG--GTACGCGCC
gi|6 : TTACAAGTCTCTAGTGCTAATCT------CTCACGC-GTCCTCTTCCTGGGTAGAAAATAATACTAAAGGGTTT-TTGCAATTAAAA-A-GAGGCAATCAAATTCCTATCCGAGAGGGGCTCTCGGGCCGGCGA-------------GATTCCTGAATCCAC---AATAAAGCCTGG--GTACGCGCCTG
gi|7 : caaacTTACAAGTTTCTAGAGCTAATTTATATCACTC--GC-A-CTGCTTCCTGAATAGAAAACAATACTTAAGAATTT-TTGCAGTTAATA-A-GAGGCAATCAAATTCCTTAATGCGAGGGACTC--GACATGGCAATTTTCAAATCATAGA-TGCTGAATCTACTTCAATATAGCC
gi|8 : taAAGTTTCTGGAGCTAACGTAAATCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTACAAGCTTCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTAATAACAGGTAATTAAATTCCTGACTGAGAGGGGGTCGAACGGGCGACTTTCGGAACTAAGATACCTGAATCCACTTCAATATAGCCTGGGTACGCGCCTG
Unaligned ( gi|9 ): TGGCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA