lowQualScore : 2222222222222222222222222222222222
lowQualScore : 9999999999999 2222 1 1 11111 11111 1111111 222 1 11 33 1 1111111111111111111111111111111111 1 22 11 1 2 77777777777777 2222 6666 1 1 33 22 1 2 11 11 4
lowQualScore : 2222222222222 4444 6 7 5 6 9 66666 3 7 3 5 55 55 0 4 3 6 4 4 8 4 22222 7777777 0 333 6 8 7 4 44 6 44 5 4444444444444444444444444444444444 7 11 22 7 6 0 44444444444444 6 2 6 6 6 0000 6 6 6 1111 6 5 5 22 77 5 0 88 88 2 6 6 0 6 6
lowQualScore : ............. .... . . . . . ..... . . . . .. .. . . . . . . . . ..... ....... . ... . . . . .. . .. . .................................. . .. .. . . . .............. . . . . . .... . . . .... . . . .. .. . . .. .. . . . . . .
lowQualScore : 0000000000000 5555 0 0 0 0 7 77777 6 3 6 4 00 44 8 0 4 5 4 0 0 0 66666 3333333 8 333 7 8 0 0 55 0 00 0 0000000000000000000000000000000000 0 00 00 0 0 0 00000000000000 0 5 0 0 0 0000 0 0 0 0000 0 0 0 00 55 0 0 00 00 5 0 0 0 0 0
consensus : AGATT--GAAGT---ATATAATAACAAGGTCATTTTACAGTGTTTTGTACAATATGGGAATATACTGTACGAGTAT-----GTATTGTGGTGAAA-ACC-GT-ATTGGAC--GAGACGC-CGTAG-GCGCCGAGTCCAAT-AC-GGT-TTTCACCACAATAC---ANAC--TC---GTACAGTATA---TTACCATATTGTACAAAACACTGTAAAATGACCTTATNATNNTATACTTCAATCTTAAAGAA-------GAAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGNNNNNAGTGTTCGGATTATCTTNTAAACGTCATCGCCATGCGGAACATTTTNTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATGTAGAAGTTTATTGGATCCAATAAACTTCTACATATTGTACNGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATA
Reference ( gi|1 ) : AGATCTAGAAGTCGAAAATAATA-TACGGTTATATTACAGTGTTTTGTACAATATTGGAATATATTGTATGAGTAT-----GTATTGTGGTGAAA-ACC-AT-ATTAGAC--GAGATGC-TGTAG-GCGCCAAGTCTAGT-AT-GGT-TTTCACCACAATAC---AAAC--TC---GTACAATATA---TTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCTTTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAAGT-TTCAGATT---TTGTCAACGCCATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATG--AAAGTT-ATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACATTGTATAGAAAAAAATACTGT
gi|3 : AGATT--GAAGT---ATATAATAATAAGATCATTTTACAGTGTTTTGTACAATATGGGAATATACTGTA
gi|17 : cgagtatgtattgtggtgaaaaccatattggacgagacgccATAATA-CAAGGTCATTTTACAGTGTTTTGTACAATATtaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|7 : cATACTATAAGATTATTTAACGTATTGTGGTGAAA-CTC-AT-ATCAGAC--
gi|9 : gacgccgtatgcgccgaTGTACTCGTAC-----GTAATGTGGTGAAA-ATC-AT-ATTGAAC--
gi|15 : ACGAGTAT-----GTATTGTGGTTAAA-ACC-GT-ATTGGAC--GAAAtcggcgcctacggcgtat
gi|3 : GAGTAT-----GTATTGTGGTGAAA-ACC-AT-ATTGGAC--GAGAca
gi|4 : cGTAT-----GTATTGTGGTGAAA-ACC-AT-ATTCGAC--GAGATGC-CGTAGCACCCCGAGCCCAAT-AT-GAT-TTT-ACCACAAcgcctacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|16 : T-----GTATTGTGGTGAAA-ATC-AT-ATTatctaggtatgtagcgttatcatatttagaaaaaataataaaac
gi|5 : gtaggtgtcaagtacTGTTATGGTGAAACACT-CT-ACTGGAC--GTGATGA-CGCAT-GCGCCAAGTCCAATGACAGGA-TTTCACCACAATAa
gi|5 : atgatTATTGTGGTGAAA-TCCTGTCATTGGAC--TTGGCGCATGC-G-TCATCACGTCCAGT-AG-AGTGTTTCACCATAACA
gi|4 : atgatTTGTGGT-AAA-ATC-AT-ATTGGGCTCGGGGTGC-TAC-G-GCATCTCGTCGAAT-AT-GGT-TTTCACCACAATAC---ATACA-TCTAGGT---ATGTAGCGTTATCATATT-TAGAAAAAATAATAAAA
gi|10 : TGGTGAAA-ACCTGT-ATTGGAC--GAGACGC-CGTAG-c
gi|3 : gtgtcaatat-ACA-AT-ATGGGA----ATATAC-TGTAG-GCGTCTCGTCCAAT-AT-GGT-TTTCACCACAATAC---ATAC--TC---Gtgtatacaccat
gi|8 : --GAGATAC-CACAG-GCGACGAGCCAAAT-ACAGGT-TTTCACCACAGCAT---TGAC--TT---GTACAGTATacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|7 : GACGC-CGTAT-GCGCCGAGTCTGAT-AT-GAG-TTTCACCACAATACGTTAAATAATC---TTATAGTAT
gi|9 : ACGC-CGTAG-GCGCCGAGTTCAAT-AT-GAT-TTTCACCACATTAC---GTAC--GA---GTACA
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GAT-TTTCACCACAATAC---AAat
gi|15 : GTCCAAT-AC-GGT-TTTAACCACAATAC---ATAC--TC---GT
gi|3 : ---AGAC--GC---CTACAGTATA---TTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCAATCTTAAAGAA-------GAAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGgaaaca
gi|14 : cgagtatgtattgtggtgaaaaccatattggacgAATATA---TAACCACATTTTACAAAGCACTGTTAAATAACCT
gi|17 : tagtattCATATTGTACAAAACACTGTAAAATGACCTT
gi|11 : ACAAAACACTGTAAAATGATCTTATAATATTATACTTCgtattat
gi|6 : AGTGTTCAGATTATCTTG--------ATCGCCATGCGGAACATTTTTTCGGTTATTTagtactttaaagatga
gi|2 : gaagttgcagcggtagtc-TTCGGATT---TTCTAAACGTCATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATA--AAA-TT-ATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATat
gi|2 : ggaagttgcagtgacaTACAATATGTAGAAGTTTATTGGATCCAATAA--TTTT--ATATTGTACTGTTAgaataaagacatattat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GAAGTTACAGTGACAGATTTTCGGATTTTCTCAACGTCATCGTCATGACGAAC
Unaligned ( gi|13 ): AAGAAGTTGCAGATATTCGGATTTTCTGTACGTCTCGATCGTCATGCGAAAC
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC
Alignments
lowQualScore : 9999999999999 44444 2 1 111 1 11 11111 1 11 4444444 555555 333 1 2222 555 1111 111 22 666666666 1
lowQualScore : 2222222222222 44444 6 2 0 5 777 0 6 88 4 5 22 44444 1 5 6 1 22 88 3333333 777777 555 5 4 2 3 8 3 55555 0000 000 1111 444 2 1 4 77 3 2 3 66 777777777 1 5
lowQualScore : ............. ..... . . . . ... . . .. . . .. ..... . . . . .. .. ....... ...... ... . . . . . . ..... .... ... .... ... . . . .. . . . .. ......... . .
lowQualScore : 0000000000000 00000 7 5 0 5 555 0 7 88 4 0 00 33333 0 0 0 0 00 33 3333333 555555 000 0 0 5 7 3 7 00000 5555 444 2222 000 8 0 0 55 0 5 0 55 000000000 0 5
consensus : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAA-------GAAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGACGNAGNNAGTG---TTCGGATT---TTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGTAAAAG-TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
Reference ( family-2983 ) : AGATT--GAAGT---ATATAATA-ACAAGGTCATTTTACAGTGTTTTGTACAATATGGGAATA-TACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AC-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTACCATATTGTACAAAACACTGTAAAATGACCTTATNATNNTATACTTCA--ATCTTAAAGAA-------GAAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGNNNNNAGTG---TTCGGATTATCTTNTAAACGTC---ATCGCCATGCGGAACATTTTNTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATGTAGAAGTTTATTGGATCCAATAAACTTCTACATATTGTACNGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATA
gi|1 : AGATCTAGAAGTCGAAAATAATATAC--GGTTATATTACAGTGTTTTGTACAATATTGGAATA-TATTGTAT---GA-GTATGTATTGTGGTGAAA-ACC-ATATTAGACGAGATGCTGTAG-GCGCCAAGTCTAGT-AT-GGTTTTCACCACAATAC-----AAACTCGTACAATATATTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCT--TTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAAGT----TTCAGATT---TTGTCAACGCC---ATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATG--AAAG-TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACA
gi|10 : TGGTGAAA-ACCTGTATTGGACGAGACGCCGTAG-ttgtatagaaaaaaatactgt
gi|11 : gtgtcaatatACAAAACACTGTAAAATGATCTTATAATATTATACTTCAGTACTTTAAAGAT-------GAtgtatacaccat
gi|12 : ---TTCGGATT---TTCTCAACGTC---ATCGTCATGACGAAC
gi|13 : gaagttacagtgacagattTA---TTCGGATT---TTCTGTACGTCTCGATCGTCATGCGAAAC
gi|15 : aagaagttgcagaAC---GA-GTATGTATTGTGGTTAAA-ACC-GTATTGGACGAAAC
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GATTTTCACCACAATAC-----Aa
gi|17 : ATAATA--CAAGGTCATTTTACAGTGTTTTGTACAATATGa
gi|2 : AGTGACATTCGGATT---TTCTAAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATA--TAAAA--TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATA
gi|3 : ggaagttgcC---GA-GTATGTATTGTGGTGAAA-ACC-ATATTGGACGAGACGCCgaataaagacatattat
gi|3 : TATGGGA--ATATACTGTAG-GCGTCTCGTCCAAT-AT-GGTTTTCACCACAATAC-----ATACTCGtacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|3 : -----AGACGCCTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCA--ATCTTAAAGAA-------GAAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGttgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|4 : cgagtatgtattgtggtgaaaaccatattggacgTTTTATTATTTTTTCTA-AATATGATAACGCTAC-ATACCTAGATGTATGTATTGTGGTGAAA-ACC-ATATTCGACGAGATGCCGTAGCACCCCGAGCCCAAT-AT-GATTTT-ACCACAA
gi|5 : TGTTATGGTGAAACACT-CTACTGGACGTGATGACGCAT-GCGCCAAGTCCAATGACAGGATTTCACCACAATAc
gi|6 : atgatAAGTTGCAGCGGTAGTCAGTG---TTCAGATTATCTTG-----------ATCGCCATGCGGAACATTTTTTCGGTTATTTAT
gi|7 : gGACGCCGTAT-GCGCCGAGTCTGAT-AT-GAGTTTCACCACAATACGTTAAATAATCTTATAGTAT
gi|8 : GAGATACCACAG-GCGACGAGCCAAAT-ACAGGTTTTCACCACAGCAT-----TGACTTGTACAGTAT
gi|9 : ACGCCGTAG-GCGCCGAGTTCAAT-AT-GATTTTCACCACATTAC-----GTACGAGTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAGTATTAGGTTATTTAACAGTGCTTTGTAAAATGTGGTTATATATT
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC
Alignments
lowQualScore : 11 1 1 111 1 1 11111 11 4444444 222222 222 1 2222 111 11 555 1
lowQualScore : 88 6 1 5 5 777 0 6 88 4 5 0 44444 1 1 88 3333333 888888 111 5 1 1 44 6 1 22 0000 99 444 1 88 1 1 1 22 777 5
lowQualScore : .. . . . . ... . . .. . . . ..... . . .. ....... ...... ... . . . .. . . .. .... .. ... . .. . . . .. ... .
lowQualScore : 55 7 0 0 5 555 0 7 88 4 0 0 33333 0 0 33 3333333 555555 555 0 0 0 33 5 0 00 5555 88 000 0 55 0 0 0 00 555 5
consensus : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAA-------GAAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTAGNAAGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATG--AAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
Reference ( family-2983 ) : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAA-------GAAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGACGNAGNNAGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGTAAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
gi|1 : AGATCTAGAAGTCGAAAATAATATAC--GGTTATATTACAGTGTTTTGTACAATATTGGAATA-TATTGTAT---GA-GTATGTATTGTGGTGAAA-ACC-ATATTAGACGAGATGCTGTAG-GCGCCAAGTCTAGT-AT-GGTTTTCACCACAATAC-----AAACTCGTACAATATATTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCT--TTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAAGT----TTCAGATTTTGTCAACGCC---ATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATG--AAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACA
gi|10 : TGGTGAAA-ACCTGTATTGGACGAGACGCCGTAG-ttgtatagaaaaaaatactgt
gi|11 : gtgtcaatatACAAAACACTGTAAAATGATCTTATAATATTATACTTCAGTACTTTAAAGAT-------GAtgtatacaccat
gi|12 : ---TTCGGATTTTCTCAACGTC---ATCGTCATGACGAAC
gi|13 : gaagttacagtgacagattAGAAGTTGCAGATA---TTCGGATTTTCTGTACGTCTCGATCGTCATGCGAAAC
gi|15 : aAC---GA-GTATGTATTGTGGTTAAA-ACC-GTATTGGACGAAAC
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GATTTTCACCACAATAC-----Aa
gi|17 : ATACAAGGTCATTTTACAGTGTTTTGTACAATATGa
gi|2 : AGTGACATTCGGATTTTCTAAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATAT---AAAATTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATAtat
gi|3 : ggaagttgcC---GA-GTATGTATTGTGGTGAAA-ACC-ATATTGGACGAGACGCCgaataaagacatattat
gi|3 : TATGGGA--ATATACTGTAG-GCGTCTCGTCCAAT-AT-GGTTTTCACCACAATAC-----ATACTCGtacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|3 : -----AGACGCCTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCA--ATCTTAAAGAA-------GAAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGttgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|4 : cgagtatgtattgtggtgaaaaccatattggacgTTTTATTATTTTTTCTA-AATATGATAACGCTAC-ATACCTAGATGTATGTATTGTGGTGAAA-ACC-ATATTCGACGAGATGCCGTAGCACCCCGAGCCCAAT-AT-GATTTT-ACCACAA
gi|5 : TGTTATGGTGAAACACT-CTACTGGACGTGATGACGCAT-GCGCCAAGTCCAATGACAGGATTTCACCACAATAc
gi|6 : atgatAAGTTGCAGCGGTAGTCAGTG---TTCAGATTATCT-----TG---ATCGCCATGCGGAACATTTTTTCGGTTATTTAT
gi|7 : gGACGCCGTAT-GCGCCGAGTCTGAT-AT-GAGTTTCACCACAATACGTTAAATAATCTTATAGTAT
gi|8 : GAGATACCACAG-GCGACGAGCCAAAT-ACAGGTTTTCACCACAGCAT-----TGACTTGTACAGTAT
gi|9 : ACGCCGTAG-GCGCCGAGTTCAAT-AT-GATTTTCACCACATTAC-----GTACGAGTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAGTATTAGGTTATTTAACAGTGCTTTGTAAAATGTGGTTATATATT
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC
Alignments
lowQualScore : 11 1 1 111 1 1 11111 11 4444444 222222 222 1 2222 111 11 1 1
lowQualScore : 88 6 1 5 5 777 0 6 88 4 5 0 44444 1 1 88 3333333 888888 111 5 1 1 44 1 4 1 7 0000 99 444 1 88 1 1 1 22 5 5
lowQualScore : .. . . . . ... . . .. . . . ..... . . .. ....... ...... ... . . . .. . . . . .... .. ... . .. . . . .. . .
lowQualScore : 55 7 0 0 5 555 0 7 88 4 0 0 33333 0 0 33 3333333 555555 555 0 0 0 33 0 0 0 0 5555 88 000 0 55 0 0 0 00 0 5
consensus : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAAGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
Reference ( family-2983 ) : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTAGNAAGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
gi|1 : AGATCTAGAAGTCGAAAATAATATAC--GGTTATATTACAGTGTTTTGTACAATATTGGAATA-TATTGTAT---GA-GTATGTATTGTGGTGAAA-ACC-ATATTAGACGAGATGCTGTAG-GCGCCAAGTCTAGT-AT-GGTTTTCACCACAATAC-----AAACTCGTACAATATATTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCT--TTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAAGT----TTCAGATTTTGTCAACGCC---ATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACA
gi|10 : TGGTGAAA-ACCTGTATTGGACGAGACGCCGTAG-ttgtatagaaaaaaatactgt
gi|11 : gtgtcaatatACAAAACACTGTAAAATGATCTTATAATATTATACTTCAGTACTTTAAAGATG-------Atgtatacaccat
gi|12 : ---TTCGGATTTTCTCAACGTC---ATCGTCATGACGAAC
gi|13 : gaagttacagtgacagattAGAAGTTGCAGATA---TTCGGATTTTCTGTACGTCTCGATCGTCATGCGAAAC
gi|15 : aAC---GA-GTATGTATTGTGGTTAAA-ACC-GTATTGGACGAAAC
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GATTTTCACCACAATAC-----Aa
gi|17 : ATACAAGGTCATTTTACAGTGTTTTGTACAATATGa
gi|2 : GAAGTTGCA-GTGACATTCGGATTTTCTAAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATAAAA-TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATAtat
gi|3 : gC---GA-GTATGTATTGTGGTGAAA-ACC-ATATTGGACGAGACGCCgaataaagacatattat
gi|3 : TATGGGA--ATATACTGTAG-GCGTCTCGTCCAAT-AT-GGTTTTCACCACAATAC-----ATACTCGtacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|3 : -----AGACGCCTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCA--ATCTTAAAGAAG-------AAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGttgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|4 : cgagtatgtattgtggtgaaaaccatattggacgTTTTATTATTTTTTCTA-AATATGATAACGCTAC-ATACCTAGATGTATGTATTGTGGTGAAA-ACC-ATATTCGACGAGATGCCGTAGCACCCCGAGCCCAAT-AT-GATTTT-ACCACAA
gi|5 : TGTTATGGTGAAACACT-CTACTGGACGTGATGACGCAT-GCGCCAAGTCCAATGACAGGATTTCACCACAATAc
gi|6 : atgatAAGTTGCAGCGGTAGTCAGTG---TTCAGATTATCT-----TG---ATCGCCATGCGGAACATTTTTTCGGTTATTTAT
gi|7 : gGACGCCGTAT-GCGCCGAGTCTGAT-AT-GAGTTTCACCACAATACGTTAAATAATCTTATAGTAT
gi|8 : GAGATACCACAG-GCGACGAGCCAAAT-ACAGGTTTTCACCACAGCAT-----TGACTTGTACAGTAT
gi|9 : ACGCCGTAG-GCGCCGAGTTCAAT-AT-GATTTTCACCACATTAC-----GTACGAGTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAGTATTAGGTTATTTAACAGTGCTTTGTAAAATGTGGTTATATATT
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC
Alignments
lowQualScore : 11 1 1 111 1 1 11111 11 4444444 222222 222 1 2222 111 11 1 1
lowQualScore : 88 6 1 5 5 777 0 6 88 4 5 0 44444 1 1 88 3333333 888888 111 5 1 1 44 1 1 6 2222 99 444 1 88 1 1 1 22 5 5
lowQualScore : .. . . . . ... . . .. . . . ..... . . .. ....... ...... ... . . . .. . . . .... .. ... . .. . . . .. . .
lowQualScore : 55 7 0 0 5 555 0 7 88 4 0 0 33333 0 0 33 3333333 555555 555 0 0 0 33 0 0 8 2222 88 000 0 55 0 0 0 00 0 5
consensus : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAGGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
Reference ( family-2983 ) : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAAGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
gi|1 : AGATCTAGAAGTCGAAAATAATATAC--GGTTATATTACAGTGTTTTGTACAATATTGGAATA-TATTGTAT---GA-GTATGTATTGTGGTGAAA-ACC-ATATTAGACGAGATGCTGTAG-GCGCCAAGTCTAGT-AT-GGTTTTCACCACAATAC-----AAACTCGTACAATATATTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCT--TTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAAGT----TTCAGATTTTGTCAACGCC---ATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACA
gi|10 : TGGTGAAA-ACCTGTATTGGACGAGACGCCGTAG-ttgtatagaaaaaaatactgt
gi|11 : gtgtcaatatACAAAACACTGTAAAATGATCTTATAATATTATACTTCAGTACTTTAAAGATG-------Atgtatacaccat
gi|12 : GTGACAGATT---TTCGGATTTTCTCAACGTC---ATCGTCATGACGAAC
gi|13 : gaagttacaAGAAGTTGCAGATA---TTCGGATTTTCTGTACGTCTCGATCGTCATGCGAAAC
gi|15 : aAC---GA-GTATGTATTGTGGTTAAA-ACC-GTATTGGACGAAAC
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GATTTTCACCACAATAC-----Aa
gi|17 : ATACAAGGTCATTTTACAGTGTTTTGTACAATATGa
gi|2 : GAAGTTGCA-GTGACATTCGGATTTTCTAAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATAAAA-TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATAtat
gi|3 : gC---GA-GTATGTATTGTGGTGAAA-ACC-ATATTGGACGAGACGCCgaataaagacatattat
gi|3 : TATGGGA--ATATACTGTAG-GCGTCTCGTCCAAT-AT-GGTTTTCACCACAATAC-----ATACTCGtacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|3 : -----AGACGCCTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCA--ATCTTAAAGAAG-------AAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGttgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|4 : cgagtatgtattgtggtgaaaaccatattggacgTTTTATTATTTTTTCTA-AATATGATAACGCTAC-ATACCTAGATGTATGTATTGTGGTGAAA-ACC-ATATTCGACGAGATGCCGTAGCACCCCGAGCCCAAT-AT-GATTTT-ACCACAA
gi|5 : TGTTATGGTGAAACACT-CTACTGGACGTGATGACGCAT-GCGCCAAGTCCAATGACAGGATTTCACCACAATAc
gi|6 : atgatAAGTTGCAGCGGTAGTCAGTG---TTCAGATTATCT-----TG---ATCGCCATGCGGAACATTTTTTCGGTTATTTAT
gi|7 : gGACGCCGTAT-GCGCCGAGTCTGAT-AT-GAGTTTCACCACAATACGTTAAATAATCTTATAGTAT
gi|8 : GAGATACCACAG-GCGACGAGCCAAAT-ACAGGTTTTCACCACAGCAT-----TGACTTGTACAGTAT
gi|9 : ACGCCGTAG-GCGCCGAGTTCAAT-AT-GATTTTCACCACATTAC-----GTACGAGTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAGTATTAGGTTATTTAACAGTGCTTTGTAAAATGTGGTTATATATT
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC
Alignments
lowQualScore : 11 1 1 111 1 1 11111 11 4444444 222222 222 1 2222 111 11 1 1
lowQualScore : 88 6 1 5 5 777 0 6 88 4 5 0 44444 1 1 88 3333333 888888 111 5 1 1 44 1 1 6 2222 99 444 1 88 1 1 1 22 5 5
lowQualScore : .. . . . . ... . . .. . . . ..... . . .. ....... ...... ... . . . .. . . . .... .. ... . .. . . . .. . .
lowQualScore : 55 7 0 0 5 555 0 7 88 4 0 0 33333 0 0 33 3333333 555555 555 0 0 0 33 0 0 4 2222 88 000 0 55 0 0 0 00 0 5
consensus : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAGGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
Reference ( family-2983 ) : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAGGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
gi|1 : AGATCTAGAAGTCGAAAATAATATAC--GGTTATATTACAGTGTTTTGTACAATATTGGAATA-TATTGTAT---GA-GTATGTATTGTGGTGAAA-ACC-ATATTAGACGAGATGCTGTAG-GCGCCAAGTCTAGT-AT-GGTTTTCACCACAATAC-----AAACTCGTACAATATATTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCT--TTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAAGT----TTCAGATTTTGTCAACGCC---ATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACA
gi|10 : TGGTGAAA-ACCTGTATTGGACGAGACGCCGTAG-ttgtatagaaaaaaatactgt
gi|11 : gtgtcaatatACAAAACACTGTAAAATGATCTTATAATATTATACTTCAGTACTTTAAAGATG-------Atgtatacaccat
gi|12 : GTGACAGATT---TTCGGATTTTCTCAACGTC---ATCGTCATGACGAAC
gi|13 : gaagttacaAGAAGTTGCAGATA---TTCGGATTTTCTGTACGTCTCGATCGTCATGCGAAAC
gi|15 : aAC---GA-GTATGTATTGTGGTTAAA-ACC-GTATTGGACGAAAC
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GATTTTCACCACAATAC-----Aa
gi|17 : ATACAAGGTCATTTTACAGTGTTTTGTACAATATGa
gi|2 : GAAGTTGCAG-TGACATTCGGATTTTCTAAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATAAAA-TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATAtat
gi|3 : gC---GA-GTATGTATTGTGGTGAAA-ACC-ATATTGGACGAGACGCCgaataaagacatattat
gi|3 : TATGGGA--ATATACTGTAG-GCGTCTCGTCCAAT-AT-GGTTTTCACCACAATAC-----ATACTCGtacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|3 : -----AGACGCCTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCA--ATCTTAAAGAAG-------AAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGttgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|4 : cgagtatgtattgtggtgaaaaccatattggacgTTTTATTATTTTTTCTA-AATATGATAACGCTAC-ATACCTAGATGTATGTATTGTGGTGAAA-ACC-ATATTCGACGAGATGCCGTAGCACCCCGAGCCCAAT-AT-GATTTT-ACCACAA
gi|5 : TGTTATGGTGAAACACT-CTACTGGACGTGATGACGCAT-GCGCCAAGTCCAATGACAGGATTTCACCACAATAc
gi|6 : atgatAAGTTGCAGCGGTAGTCAGTG---TTCAGATTATCT-----TG---ATCGCCATGCGGAACATTTTTTCGGTTATTTAT
gi|7 : gGACGCCGTAT-GCGCCGAGTCTGAT-AT-GAGTTTCACCACAATACGTTAAATAATCTTATAGTAT
gi|8 : GAGATACCACAG-GCGACGAGCCAAAT-ACAGGTTTTCACCACAGCAT-----TGACTTGTACAGTAT
gi|9 : ACGCCGTAG-GCGCCGAGTTCAAT-AT-GATTTTCACCACATTAC-----GTACGAGTACA
blockSeqs : AA C T C . CTA T C TG C G A GTTAA T T GT . . . G A C TG A G A GACA CA TCG T . A G T AG . A
blockSeqs : . . . . G . . A . G A . . TT A T A T GT .
blockSeqs : . . . A . . . . T C T G A AA .
blockSeqs : . A . . . . G G A . G . .
blockSeqs : . C . . . . T
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : N***
originalCons : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAGGTG---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
finalCons : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAGGTN---TTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAGTATTAGGTTATTTAACAGTGCTTTGTAAAATGTGGTTATATATT
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC
Alignments
lowQualScore : 11 1 1 111 1 1 11111 11 4444444 222222 222 1 11111 111 11 1 1
lowQualScore : 88 6 1 5 5 777 0 6 88 4 5 0 44444 1 1 88 3333333 888888 111 5 1 1 44 1 1 33333 99 444 1 88 1 1 1 22 5 5
lowQualScore : .. . . . . ... . . .. . . . ..... . . .. ....... ...... ... . . . .. . . ..... .. ... . .. . . . .. . .
lowQualScore : 55 7 0 0 5 555 0 7 88 4 0 0 33333 0 0 33 3333333 555555 555 0 0 0 33 0 0 44444 88 000 0 55 0 0 0 00 0 5
consensus : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAG--ATATTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
Reference ( family-2983 ) : AGATCTAGAAGTCGAAAATAATATACAAGGTCATTTTACAGTGTTTTGTACAATATGGNAACGCTACTGTAC---GA-GTATGTATTGTGGTGAAA-ACC-GTATTGGACGAGACGCCGTAG-GCGCCGAGTCCAAT-AT-GGTTTTCACCACAATAC-----ANACTCGTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTNTATACTTCA--ATCTTAAAGAAG-------AAAGAGTGAGGAAAATCAAGTAAATGAANCCGTGAGTCNAAAGCGGCAGANGTNGCAG--GTNTTCGGATTTTCTNAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTCATCGTTGGANTTTCCACTAAATTCATTTCCTTTTTTAATNAGTCGCCATCTTNAATTTTNAACNNTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTACA
gi|1 : AGATCTAGAAGTCGAAAATAATATAC--GGTTATATTACAGTGTTTTGTACAATATTGGAATA-TATTGTAT---GA-GTATGTATTGTGGTGAAA-ACC-ATATTAGACGAGATGCTGTAG-GCGCCAAGTCTAGT-AT-GGTTTTCACCACAATAC-----AAACTCGTACAATATATTCCCATATTGTACAAAACACTGTAAAATGATCTTTTTATTCTATACCTCT--TTCTGAAAGAAATTGATCAAAAGAGTGAGGAAAATCAAGTAAAT-AATCCGTGAGTCAAAAGCAGCAGATGAAGGAA--GT-TTCAGATTTTGTCAACGCC---ATTGTCATGCGGAACATTTTGTCGGTTGCTTGCTTTCATCGTTGAAATTTCCACTAAATTCATTTCCTTTTTTAATCAGTCGCCATCTTCAATTTTGAACTTTACAATATGAAAGTTATTGGATCCAATAAACTTCTACATATTGTACGGTCACATGGTAACATCTGGAGTAGGTGATTGGCT-ATACACTTACAAGTACA
gi|10 : TGGTGAAA-ACCTGTATTGGACGAGACGCCGTAG-ttgtatagaaaaaaatactgt
gi|11 : gtgtcaatatACAAAACACTGTAAAATGATCTTATAATATTATACTTCAGTACTTTAAAGATG-------Atgtatacaccat
gi|12 : GTGACAG--ATTTTCGGATTTTCTCAACGTC---ATCGTCATGACGAAC
gi|13 : gaagttacaAGAAGTTGCAG--ATATTCGGATTTTCTGTACGTCTCGATCGTCATGCGAAAC
gi|15 : aAC---GA-GTATGTATTGTGGTTAAA-ACC-GTATTGGACGAAAC
gi|16 : GTAG-GTGTCAAGTACAAT-AT-GATTTTCACCACAATAC-----Aa
gi|17 : ATACAAGGTCATTTTACAGTGTTTTGTACAATATGa
gi|2 : GAAGTTGCAGTGACATTCGGATTTTCTAAACGTC---ATCGTCATGCGGAACATTTTGTCGGTTGTTTGTTTTTATCGTTAGATTTTCTATTAAATTTATTTCCTTTTTT--TAAATCGCCATCTTGAATTTTTAACAGTACAATATAAAA-TTATTGGATCCAATAAACTTCTACATATTGTACGGTCACGTGGTAACATCTGGGGTAGGTGATTGGCTAATACACTTACAGGTATAtat
gi|3 : gC---GA-GTATGTATTGTGGTGAAA-ACC-ATATTGGACGAGACGCCgaataaagacatattat
gi|3 : TATGGGA--ATATACTGTAG-GCGTCTCGTCCAAT-AT-GGTTTTCACCACAATAC-----ATACTCGtacagtatattcccatattgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|3 : -----AGACGCCTACAGTATATTCCCATATTGTACAAAACACTGTAAAATGATCTTATTATTATATACTTCA--ATCTTAAAGAAG-------AAAGA------AAAATCAAG---ATGAAACCGTGAGTTCAAAGTGGCTGACGttgtacaaaacactgtaaaatgatcttattattatatacttcaatcttaaagaagaaagaaaaatcaagatgaaaccgtgagttcaaagtggctgacg
gi|4 : cgagtatgtattgtggtgaaaaccatattggacgTTTTATTATTTTTTCTA-AATATGATAACGCTAC-ATACCTAGATGTATGTATTGTGGTGAAA-ACC-ATATTCGACGAGATGCCGTAGCACCCCGAGCCCAAT-AT-GATTTT-ACCACAA
gi|5 : TGTTATGGTGAAACACT-CTACTGGACGTGATGACGCAT-GCGCCAAGTCCAATGACAGGATTTCACCACAATAc
gi|6 : atgatAAGTTGCAGCGGTAGTCA--GTGTTCAGATTATCT-----TG---ATCGCCATGCGGAACATTTTTTCGGTTATTTAT
gi|7 : gGACGCCGTAT-GCGCCGAGTCTGAT-AT-GAGTTTCACCACAATACGTTAAATAATCTTATAGTAT
gi|8 : GAGATACCACAG-GCGACGAGCCAAAT-ACAGGTTTTCACCACAGCAT-----TGACTTGTACAGTAT
gi|9 : ACGCCGTAG-GCGCCGAGTTCAAT-AT-GATTTTCACCACATTAC-----GTACGAGTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TAGTATTAGGTTATTTAACAGTGCTTTGTAAAATGTGGTTATATATT
Unaligned ( gi|18 ): GGAAGTTGCAGTGACAGATATTCGAATTTTCTC