lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 2222 33333333 111111 777777777777777777777777777777777777777777777777777777 1111 3 77777777777777777777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 1 44444444444444444444444444444 111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4444444
lowQualScore : 6 2 4 0 66 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 555555 4 3333 7 7777 7 3 3 4 22222222 55 4 1 000000 55 2 444444444444444444444444444444444444444444444444444444 2222 5 1 9 7 8 0 5 1 3 5 6 99999999999999999999 3 0 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 777 66 4 7777 0 77777777777777777777777777777 5 3 333 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 1 3333333 6
lowQualScore : . . . . .. . ................................................................................................................. . ...... . .... . .... . . . . ........ .. . . ...... .. . ...................................................... .... . . . . . . . . . . . .................... . . . ............................................................................................................................... ... .. . .... . ............................. . . ... ................................................................................................................................................................................................................................ . . ....... .
lowQualScore : 0 7 1 8 11 9 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 222222 4 6666 9 6666 0 9 0 4 33333333 55 0 6 555555 55 6 555555555555555555555555555555555555555555555555555555 9999 0 8 1 8 9 0 1 4 6 0 2 88888888888888888888 8 5 4 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888 11 4 4444 4 77777777777777777777777777777 1 9 666 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 3333333 0
consensus : CCGCTATTCCATTCGTCCGTGATG--CGTGGTCC-------------------GTGTC-------CGCGTT-A--T-TCAGTGATCCG------TGAA---CGCT-T--T----CATATATCCGTGAAAA---TA-T-TG--A-A-TCT-TTCTTTTGT----GT-TT-CGGTTTCGAAA--GGCANACACGT-TCCTTG-AAA---CAAAA--CT-AGAA-CA---ATT--TAATATGTATC--NAACCATGNNAGC-TGTGGT-GATCCGAGGA-------CGGAAAAAG-A--TAAAA-CGNAAAC-ACCGCTGGTGGATACGTT-CAGTAATTAAAAATCGC-CTACAATAT-GGTACATA--ATTACTACCATTNAGTTAAGGAGCTGGAACTCTGTNATGA--AA---G-A---------ATTCA-------GG----------------------GTTT---------TAC-------------A------CAGN------------TTTC-----------TTGTGATTGC---AG--CTT-TTTN--AAGGCACGTTTCTCGTCAACGTGTC-GTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTGCGCG------------------ATT-----CG-T-----------CA-------------N-----------G------------------G------------ATCACG-------GACGAAT---GGAATGCTC-CAACGTA-TTTTCTNTATGAGCG--ATTTTCA------C-GG--ACGCGAACAAGCACGCTTCACGGACACNTCTCACAGACACGGATCACGCATCACGGAT-------AAATGGAATAGCGGCC
Reference ( gi|2 ) : CCACTTTTCCATTCATCCCTGATG--CGTGGTCT-------------------GTGTC-------CATGTT-A--TTTCAGTGATCTG------TGAAG--CACTTT--T--A-CATATATCTGTGAAAA--CTA-TCTGGTACA-TCT-TTCTTTTGT----GT-TT-CGGTTTGGAAA--GGCAAATATGT-TCCTTG-AA----CAAAA--CT-AGAA-TA---ATT--TAATATGTATC--AAACTATGTAATC-TTTGGT-GATTCAAGGA-------TGGAAAAAG-A--CAAAA-TATAAAC-ATCACTGATGGATACATT-CA-TGATTAAAAATTGC-CTACAGTAT-GTTACATACCATTACTACCATTTAGTTAAGGAGCTGGAACTCTGTTGTAA--AA---G-A---------ATTCA-------GG----------------------GTTT---------TAC-------------A------CAGG------------TTTC-----------TTGTGATTGC---AG--CTT-TTTC--AAGACATGTTTCTCTCCACCATGTC-TTCTGTGAATG----GACCGTGTGTGTGAAAAATCACTCACTAGGCG------------------ATT-----TG-T-----------CA-------------G-----------G------------------G------------ATCACA-------GGTGAAT---GGAATGCTG-CAATGTA-TTTCCTGTACAAGCA--ATTTTCA------C-AG--ACGTAAACAAA-----------GACA-A-------------------GCATTATGGAT-------AAATGGAATAGCAGCCTCA
gi|4 : CCGCTTTTCCATTCGGCCTCGATG--CGTTGTTC-------------------GTGCC-------CGCGT--A-----CGG-GATCCG-------GAAA---ACTTTGTC--C-CTTATATCCATGGAAA--ATA-TCCGTGAGG-TTT-TTCTTTTGT----GC-TT----TTTG--------CAAACATGT-TCCTTA-AAA---CCAAA--CA-AGTA-CA---ATT--TAACATGTGTC--GAACTATGGCAGT-TTTGGT-GATCCGAGGA-------C----------------A-CGTAAAC-ACCGCTGGTGGATACATT-CAGTAAGTAAACATTGC-CTACAATAT-GGTACA------TACTACCATTAAGTTAAACAACTGGAACCCTGCAATGATGAATTCG-ATTTTTTCCTATCCAAATCAATAA----------------------GTTT---------GTC-------------A------CAGC------------TTTC-----------TTGTGACTGC---AGCTCTT-TTTC---AGTCAGGTTTCTCGTCAACGTGTCGTTCT-TGACTGGTCCGTCCGTGTGTGTGAAAAGTCGCTTACTTTGCT------------------ATT-----CG-T-----------CAC------------GTAAAAGGATCCG------------------A------------ATCGCA-------GACGAAT---AGAA
gi|5 : taaaatatatgCCGCTATTCCATTCGTCGGTGGTGTTCGT-GTCC-------------------GCGTC-------CGTGgagcgtcttttgacattgtctgaacgttac
gi|8 : tacttaagCCGCTATTCCATTCATCCGTGATG--TGT--TCC-------------------GTGAAG------CACAAT-A--T---AG--ATATA------TAA----CA------T--A-CATATATCCGTGAAG-----------------TCT-TTCTTTTGTATTTGT-TT-GGGTTCCGAAA--GGCAAACACGA-TCCTTG-AAA---TAAAA--CT-AGAA-TA---ATT--TAATATGCATT--TAACCATGGTAGC-TGTGAT-GATCCCAGGA-------AGGAAAAAT-A--TGAAACTA-AAAC-ATTGCTG-CCGATGCGTT-Ccccgcgtccgtgatcactattccatcattctaaaggcaaacgtgtttcatgaaataattctaaaacaattttatgtgtatcttacattagcagttttagactaaggaagaaaaaatataaaccaacactgatcgatgcgttcagttattcagaatcgcatacaatatggtatatactatcatttagtaaagcagcttttccccttactcagtttatcagctttttgttgtgactgcagctttttaaagttctgtttatcgtcaacgtgtcgttcgtaactgaatattcgctcactacgcgagcgtcacggacacggatattgacgccgacacggatcactgacaaatggaatgctccaacgtacttccagtatgagcgttattttattggcgcgaacacggatcacggacgaacataata
gi|14 : ggCCGCTATACCATTCGCCCGTGATG--CGTGACCC-------------------GTGTC-------C----T-A--GGTCCGT-ATGCG------TGAA---CGCT---------CATATA-----GAAAA--C---------ACA-TTT-TTGTTCT-T----GT-TT-
gi|3 : gggttaggCGCTATTCCATTTGTCCCTGATC--CAGGATCC-------------------GTGTCCGTGAAGCGTGTT-AGTTTTC-GT-ATCCGCGTTCATGAAAATCGCT---------CATCTA-----GAAAA--ATACTTTGGCACATTCTATTCTTCTTT----GA-TC-CG
gi|1 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcaCTATTCCATTTGTTCGTGATG--CGTGATCC-------------------GTGTC-------TGTGtctttatag
gi|1 : ttaagctggtaatccattcgtccgggatgcgtggtccctgcccgtgctccgcacccgtgtccgtgtccgcgtccgtgatgcgtgaagctatattccatatctccgtataaatatctgtgaaatcttgcttttttgttcgaaatgcatacatgttcgccgaaacaaaactataactacatgttcgtaatatgtatgtaaccatggcaactgtgatgatccgaggacggaaaaagacagaaaggaaacatcactggtggatccgttgaataataaaaatcgcttactttaaagtactgtcatttcaggagctggaattctattatgaagaattcgtgtttctgtcactacattaattcaagttttaaaccgatttttttgtgattgcaacttatttgaaagcacgtgactcgtacgtacgcgtgaaatatcactcactgtgtacttcatcataaacgcggatacgggcgcgtttcatgcatcacacatcacggacgaatgaaatgttccattgtattttttatttgagcaattttcacgcacgcggacaaggacacatctTCCATTCGTCCGGGATG--CGTGGTCCCTGCCCGTGCTCCGCACCCGTGTC-------CGTGTCCG--CGTCCGTGATGCG------TGAAG--CTATAT--T--C-CATATCTCCGTATAAA---TA-TCTGTGAAA-TCT-TGCTTTTTT----GT-TC--------GAAA--TGCATACATGT-TCGCCG-AAA---CAAAA--CT-ATAACTACATGTTCGTAATATGTATG--TAACCATGGCAAC-TGTGAT-GATCCGAGGA-------CGGAAAAAG-A--CAGAA-AGGAAAC-ATCACTGGTGGATCCGTTGAA-TAA-TAAAAATCGC-TTAC--T----TTA-A----AGTACTGTCAT----TTCAGGAGCTGGAATTCTATTAT-G--AA---G-A---------ATTC--------GT----------------------GTTTCTGTCAC--TAC-------------ATTAATTCAAGTTTTAAACCGATTTTT-----------TTGTGATTGC---AA--CTTATTTG--AAAGCACGTGACTC----------------GTA-----------CGTACGCGTGAAATATCACTCACTGTGTA------------------CTT-----CA-T-----------CATAAACGCGGATACG-----------G------------------GCGCGTTTCATGCATCACACATCACGGACGAAT---GAAATGTTC-CATTGTA-TTTTTTATTTGAGCA--ATTTTCA------C-GC--ACGCGGACAAG-----------GACACATCTCACAGACACGGATCACGCATCACGAAC-------AAATGGAATAG
gi|7 : ttaagctggtaaCGTTTGTCCGTGATG--CGTGGTCT-------------------ATGGC-------CAAGTT----T----GTGATCCG------T
gi|12 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgttttccgtgattggcccgtgtgcgtgaaaaatcgcttattgtgcgattcatcacgaacatggatTGATG--CCTGGTTTAA-----------------GTGTC---------TGTG-A--TC-CAATGTTC---------------CAC----------CATATATCTGTAA-----------TG------TCT-TTCTTTT-------T-TA-C-ATTTCGAAA--GGCATACAAGT-TACTTG----------AA--CT-ACAA-AA---ATT--TAATATGT
gi|13 : TT-G--TTTAAGTG-TCTG------TGATC--CAATGT--TCCATCATATATCTGTAA-----------TG------TCT-TTCTT---------T-TT-TGGTTTCGAAA--GGCATACAAAT-TACTTG----------AA--CT-ACAA-AA---ATT--TAATATGTct
gi|6 : ATATATCCGTGAAAAAAC-A-T-TAGTGAAGTCT-TTCTTTTGT----GT-TT-TGGTTTTGAAA--ATTATAAAAGT-TCCTTGGAA----CAAAA--CT-AGAA-CA---ATT--CTATATGTACC--GG--TATCTGAAC-AG-GGCAGCTTTGAGGA-------TAGAAAAAA-AACTAAGA-CGTTAAC-ACCACTGGTGAATACTTT-CGGTAATTAAAAATCGC-CTACAATAT-GGTATATA-CATT-----CATTAAG----GGAGCTGGAACTCTGTGAT----TA---GCA---------ATTCA-------GGTTTTCCCTCACCAGATTGATATGTTT---------T-T-------------A------CAGA------------TTTC-----------TTTTGATTGC---AG--CTT-TTTct
gi|3 : -TTT-TTCATTTGT----GTGTTATACTTTGGAAATTG-----TTTGT-TCCTTG-AA----AAAAA--CCCAGG--------TT--T--TATGTATC----------TA------TGAT-GATT-------------TG-----------TAAAA-TACAAAC-ACAGTTCGTGAATATGCT-CAGTAATTAAAAAAAAAACTACAAAAT-TGTACATACAA-----AC-ATTTAGTTAAGGAGCTTGAACCCTGTTAAGA--AA---A-A---------AATCA-------Gt
gi|5 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagtAAA--GGCAAACGTGT-TTCATG-AA-----ATAATTCT-AAAA-CA---ATT--TTATGTGTATCTTACATTA-GCAGT--TTTAG---ACT-AAGGA--------------AG-A--AAAAA-TATAAACCAACACTGATCGATGCGTT-CAGTTATTCAGAATCGC-ATACAATAT-GGTATATACTAT------CATTTAGTAAAGCAGCTTTTCCCCT-T------------------------ACTCA-------G-------------------------TT---------TAT--------------------CAGC------------TTTTTG---------TTGTGACTGC---AG--CTT-TTTA--AAGTTCTGTTTATCGTCAACGTGTC-GTTCGT---------AAC--------TGAATATTCGCTCACTACGCGAGCGTCACGGACACGGATATTGACGCCG-A-----------CA-------------C-----------G------------------G------------ATCACT-------GACAAAT---GGAATGCTC-CAACGTA-CTTCCAGTATGAGCGTTATTTT-A------T-TG--GCGCGAACAaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcacggatcaaagaagaatagaatgtgccaaagtatttttctagatgagcgattttcatgaacgcggatacgaaaactaacacgcttcacggacacggatcctggatcagggacaaatggaatagcgtctttatag
gi|4 : tacttaagccgctattccattcgtcggtggtgttcgtgtccgcgtccgtgcccgcgtccgtgatcactattccatcattctTACGTGTCCTCG-GATCACCAAAA--CT-GCCA-TA---GTT--CGACACATGTT--AAAT--TGTACTTGTTTGGT---TTTAAGGAACATGTTTGCAAAAAGCA--CAAAA-GAAAAAC-CTCAC----GGATATTTTCCA-TGcggatcacggacgaacataata
gi|16 : taaaatatatgccgcttttccattcggcctcgatgcgttgttcgtgcccgcgtacgggatccggaaaactttgtcccttatatcCTTG-AAA---TAAAA--CT-AGAT-CG---AGT--TAATATGTATC--TAACCCTGGCAGT-TGTGGT-AAACCTAGG--------TAGAAAAaacaccgctggtggatacattcagtaagtaaacattgcctacaatatggtacatactaccattaagttaaacaactggaaccctgcaatgatgaattcgattttttcctatccaaatcaataagtttgtcacagctttcttgtgactgcagctctttttcagtcaggtttctcgtcaacgtgtcgttcttgactggtccgtccgtgtgtgtgaaaagtcgcttactttgctattcgtcacgtaaaaggatccgaatcgcagacgaatagaagagcgtcttttgacattgtctgaacgttac
gi|7 : AAC-ACCGCTGGTGGATACGTT-CAGTAATAAAGGTTTGC-CTTCAATAT-----CGTAT--TTGCTACCGTTTAGTAAAGGAGCTGGAACTTTGTGATGA--A----G-A---------ATTTA-------GA----------------------ATTTGGCTCATTATATTA-----------A------CACG------------TTTA-----------TTGTGTTTGC---AA--CTT-TTTTTGAAGGCATGTTACTCGTCAACATGTT-TTCCGTGATTG----GCCCGTGTGCGTGAAAAATCGCTTATTGTGCG------------------ATT-----CA-T-----------CA-------------
gi|9 : ACCGGTGGATATCTT-CAGTAATTAAATATCGT-TTGCATTAC-AGTACA-A--ATTA--A--ATTAACTTAAGGAGCTGGGACTC---TGTAA--TA---A-A---------ATTC--------GG----------------------GTTT---------TCCCTCAAATAATTCAA------AAGT------------TTTCCTAATATGTCTTTATG-TTTC---AG--CTT-TTTTG-AAGGCACGTTTCTGACCA-CGTGTC-GTCCGTGGCTG----ATCCGTGTGcgaacatggatacggatcacaaacttggccatagaccacgcatcacggacaaacg
gi|17 : AAATCGC-CTACAGTATAGCT------CAT-AGTACAGTTTAGTTAAAGGGCTGGTACTCTGTGAT-G--AA---G-A---------ATTCgaatag
gi|3 : tTTT---------TA--------------A------CAGA------------TT-C-----------TTGCCAATGT---AG--CTT-TTTTTAAAGCCATGTTTCTGGTCAACGTGTC-ATCCGTGACTG----GTCCGTTTTCGTGAAAAACAGCTCAC-GGACG--------------------T-----TGATACGGACACGGGCA-------------C-----------G------------------G------------ATCAAA-------GAAGAAT---AGAATG-TGCCAAAGTATTTTTCTAGATGAGCG--ATTTTCATGAACGC-GGATACGAAAACTAACACGCTTCACGGACA-C-------------------GGATCCTGGATCAGGGACAAATGGAATAGC
gi|15 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtTTT---------TAC-------------A------TA--------------TTTC-----------TTGTAATTGC---AG--C---TTTC--AAGgtctttatag
gi|10 : ccaaattaataagtttt-------------A------CATA------------TGTC-----------TTGTGATTGCTCCGG--TTG-TGT----ATGCTTGTTTCTCGCCAAATTGGC-GTCCGTGACTG----GTCCGAGTGCGTGAAAAATTGCTCACCGCGCA------------------ATT-----CG-T-----------CAAAAACAC------G-----------GATACGGACCTGGATAACGG------------ATCACG-------GACAAAT---TGAATGCTC-CAATGT--CTTCCTTCATGAACG--ATTTTCA------C-AG--Atttgaaggcaaattttcgtctacgt
gi|7 : tcgCCATGTTCGTGATGAATCGCACAATAAGCG------------------ATT-----TT-T-----------CA-------------C-----------G------------------C------------A-CACG-------GGCCAATCACGGAA
gi|11 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgtt------------ATCA-A-------GCCGAAT---GGAATGCTC-CAACATA-TTTTCTTTATGAGAG--ATTTTCA------CGAG--Aatacggatcacaaacttggccatagaccacgcatcacggacaaacg
gi|8 : CATCACGGAT-------GAATGGAATAGCGGCCacgcgtcatggacggacgacgcatagcggacgaaacacgcatcacgtatcacggacgaacaga
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTAGTGAATCATGCCGCTATACCATTCGTCCGTGATGCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333 111111 1111 3333333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222222 11111 111 1 1111 1111111 666666666666666666666666666666666666666666666666666666666666666666666666666 1111 1111111111111111111111111111111111111 1
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 444444444444444 5 0 1 7 2 33 0 8888 55 1 111111 1 00 55 5 0 3 0 888 2222 88 1 0 4 0 1 5555555555 4 2 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 44 44444444444 777 4 4 44444 333 0 0 1 1 1 0000 66 5 8888888 555555555555555555555555555555555555555555555555555555555555555555555555555 2222 2 6 1 99 5 1 6666666666666666666666666666666666666 2 2 2 2
lowQualScore : .............................................................................................................................. ............... . . . . . .. . .... .. . ...... . .. .. . . . . ... .... .. . . . . . .......... . . . .................................................................................................. .. ........... ... . . ..... ... . . . . . .... .. . ....... ........................................................................... .... . . . .. . . ..................................... . . . .
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000000000000000 7 1 0 2 3 00 7 5555 55 1 555555 0 55 55 6 1 4 2 999 3333 33 4 1 4 1 9 6666666666 7 6 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 55555555555 000 0 0 00000 222 1 0 1 1 4 6666 11 7 6666666 777777777777777777777777777777777777777777777777777777777777777777777777777 1111 2 7 0 22 2 8 4444444444444444444444444444444444444 5 8 5 2
consensus : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCC--GTGTC-CGCGTTA-T--CNGTGATCCGTGAA-CGCT----T--T----CATATATCCGTG-A-AAA--------TATC-------TGA---A--TCTTTCTTTTGT----GT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA--ATTACTACCATTTAGTTAAGGAGCTGGAACTCTGTNATGA--AA---G-A---------ATTCAGG----------------------GTTT---------TAC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CG-CGATTC-------GTCA---A--------------CGGAT-----------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTA-TTTCCTNTATGAGCG--ATTTTCACGGACGCGGACAAGAA--C-TCA-GGAC--ACGNCTCACAG--------ACACGNATCACGNATCACGGACAAACGGAATAGCGGCC
Reference ( family-2963 ) : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCC--GTGTC-CGCGTTA-TT-CAGTGATCCGTGAA-CGCT----T--T----CATATATCCGTG-A-AAA--------TAT--------TGA---A--TCTTTCTTTTGT----GT-TT-CGGTTTCGAAAGGCANACACGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCNAACCATGNNAGCTGTGGTGATCCGAGGACGGAAAAAGA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA--ATTACTACCATTNAGTTAAGGAGCTGGAACTCTGTNATGA--AA---G-A---------ATTCAGG----------------------GTTT---------TAC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCACGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CG-CGATTC-------GTCA------------------NGGAT-----------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTA-TTTTCTNTATGAGCG--ATTTTCACGGACGCGAACAAGCACGCTTCACGGAC--ACNTCTCACAG--------ACACGGATCACGCATCACGGATAAATGGAATAGCGGCC
gi|1 : TAATCCATTCGTCCGGGATGCGTGGTCCCTGCCCGTGCTCCGCACCCGTGTCC--GTGTC-CGCGT------CCGTGATGCGTGAA--GCTATATT--C----CATATCTCCGTA-T-AAA--------TATCTG-----TGA---AA-TCTTGCTTTTTT----GT-T--------CGAAATGCATACATGTTCGCCGAAACAAAACTATAACTACATGTTCGTAATAT------GTATGTAACCATGGCAACTGTGATGATCCGAGGACGGAAAAAGA--CAGAAAGGAAACATCACTGGTGGATCCGTTGAATAA-TAAAAATCGC-TTACTTTA--------A--AGTACTGTCAT----TTCAGGAGCTGGAATTCTATTATG---AA---G-A---------ATTC-GT----------------------GTTTCTGTCAC--TAC-------------ATTAATTCAAGTTTTAAACCGATTTTT-----------TTGTGATTGC---AAC-T-TA----TTTG--AAAGCA----------------------CGTGACTC----GTACGTACGCGTGAAATATCACTCACTG-TG-TACTTC-------ATCATAAACG------------CGGAT------------------ACG-------GGCGCGTTTCATGCATCACACATCACGGACGAATGAAATGTTCCATTGTA-TTTTTTATTTGAGCA--ATTTTCACGCACGCGGACAA-----------GGAC--ACATCTCACAG--------ACACGGATCACGCATCACGAACAAATGGAATAG
gi|10 : ttaagctgg-------------A------------------CATATGTC-----------TTGTGATTGCTCCGG----T-----TGTG--TATGCTTGTTTCTCGCCAAATTGGCGTCCGTGACTG----GTCCGAGTGCGTGAAAAATTGCTCACCG-CG-CAATTC-------GTCAAAAACACGGATACGGACCTGGAT-----------------AACGGATCACGG-----------------------ACAAATTGA----ATGCTCCAATGT--CTTCCTTCATGAACG--ATTTTCACAGA
gi|11 : tcgAT-----------------CA-A-------G-----------------------CCGAATGGA----ATGCTCCAACATA-TTTTCTTTATGAGAG--ATTTTCACG----------AGAACGCGTCATGGACGGACGACGCATAGCGGACGAAACACGCATCACGTATCACGGACGAACAGA
gi|12 : TGATGCCTG-------------------------GTTTAAGTGTC-TGTG--A-TC-CAATGTTCC----A-C---------------CATATATCTGTA-A-----------------------TG-------TCTTTCTTTT-------T-TA-CA-TTTCGAAAGGCATACAAGTTACTTG------AACTACAAAAA----TT--TAATAT------GT
gi|13 : T-CTGTGATCC---AA-TGTT----CCAT----CATATATCTGTA-A-----------------------TG-------TCTTTCTTTT----------T-TGGTTTCGAAAGGCATACAAATTACTTG------AACTACAAAAA----TT--TAATAT------GTct
gi|14 : ttgtttaagtgCCGCTATACCATTCGCCCGTGATGCGTG-------------------------ACCC--GTGTC-C----TAGGT-CCGT-ATGCGTGAA-CGC--------T----CATATA-----G-A-AAA--------CAC--------------A--TTTTTGTTCT-T----GT-TT-ct
gi|15 : gggttaggTTT---------TAC-------------A------------------TA--TTTC-----------TTGTAATTGC---AGC-T-TTCAAGTTTG--AAGGCAAATTT-TCGTCTACGT
gi|16 : ccaaattaataagttttCTTGAAATAAAACTAGATCGA----GT--TAATAT------GTATCTAACCCTGGCAGTTGTGGTAAACCTAGG-TAGAAAA
gi|17 : AAATCGC-CTACAGTATAGCTCATA--GT----ACAGTTTAGTTAAAGGGCTGGTACTCTGTGATG---AA---G-A---------ATTC
gi|18 : tCCGCTATACCATTCGTCCGTGATGCGT
gi|2 : ttagtgaatcatgCCACTTTTCCATTCATCCCTGATGCGTG-------------------------GTCT--GTGTC-CATGTTA-TTTCAGTGATCTGTGAAGCACT----T--TTA--CATATATCTGTG-A-AAAC-------TATC-------TGGTACA--TCTTTCTTTTGT----GT-TT-CGGTTTGGAAAGGCAAATATGTTCCTTGAA-CAAAACTAGAATAA----TT--TAATAT------GTATCAAACTATGTAATCTTTGGTGATTCAAGGATGGAAAAAGA--CAAAATATAAACATCACTGATGGATACATTCA-TGATTAAAAATTGC-CTACAGTATGTTACATACCATTACTACCATTTAGTTAAGGAGCTGGAACTCTGTTGTAA--AA---G-A---------ATTCAGG----------------------GTTT---------TAC-------------A------------------CAGGTTTC-----------TTGTGATTGC---AGC-T-T-----TTTC--AAGACATGTTTCTCTCCACCATGTCTTCTGTGAATG----GACCGTGTGTGTGAAAAATCACTCACTA-GG-CGATTT-------GTCA------------------GGGAT-----------------CACA-------G-----------------------GTGAATGGA----ATGCTGCAATGTA-TTTCCTGTACAAGCA--ATTTTCACAGACGTAAACAA--------------------------AG--------ACAAGCATTATG-------GATAAATGGAATAGCAGCC
gi|3 : T----T--C----CATATATCCAGG-A-AAAAAAACCCATATCGGTTCCGTGA---AGTTTTTTCATTTGT----GTGTTATACTTTGGAAAT---TGTTTGTTCCTTGAAAAAAACCCAGG--------TT--T--TAT------GTATCTA-------------TGATGATTTG----------------TAAAATACAAACACAGTTCGTGAATATGCTCAGTAATTAAAAAAAAAACTACAAAATTGTACATA------CAAACATTTAGTTAAGGAGCTTGAACCCTGTTAAGA--AA---A-A---------AATCAGtca
gi|3 : TTT---------TA--------------A------------------CAGATT-C-----------TTGCCAATGT---AGC-T-T-----TTTTTAAAGCCATGTTTCTGGTCAACGTGTCATCCGTGACTG----GTCCGTTTTCGTGAAAAACAGCTCACGGACGTTGATACGGACACGGGCA------------------CGGAT-----------------CAAA-------G-----------------------AAGAATAGA----ATGTGCCAAAGTATTTTTCTAGATGAGCG--ATTTTCATGAACGCGGATACGAAAACT-----AAC--ACGCTTCACGG--------ACACGGATCCTGGATCAGGGACAAATGGAATAGCGaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcacggatcaaagaagaatagaatgtgccaaagtatttttctagatgagcgattttcatgaacgcggatacgaaaactaacacgcttcacggacacggatcctggatcagggacaaatggaatagcgtctttatag
gi|4 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtCCGCTTTTCCATTCGGCCTCGATGCGTT-------------------------GTTC--GTGCC-CGCGT-A----CGG-GATCCG-GAA-AACT----T--TGTCCCTTATATCCATGGA-AAA--------TATCCG-----TGA---GG-TTTTTCTTTTGT----GC-TT----TTT------GCAAACATGTTCCTTAAAACCAAACAAGTACAA----TT--TAACAT------GTGTCGAACTATGGCAGTTTTGGTGATCCGAGGAC---------------ACGTAAACACCGCTGGTGGATACATTCAGTAAGTAAACATTGC-CTACAATATGGTACATA------CTACCATTAAGTTAAACAACTGGAACCCTGCAATGATGAATTCG-ATTTTTTCCTATCCAAATCAATAA---------------GTTT---------GTC-------------A------------------CAGCTTTC-----------TTGTGACTGC---AGC-TCT-----TTTT--CAGTCAGGTTTCTCGTCAACGTGTCGTTCTTGACTGGTCCGTCCGTGTGTGTGAAAAGTCGCTTACTT-TG-CTATTC-------GTCACGTAAAAGGATC------CGAAT-----------------CGCA-------G-----------------------ACGAATAGA----Atctttatag
gi|5 : taaaatatatgCCGCTATTCCATTCGTCGGTGGTG------------------------------TTC--GTGTC-CGCGT-------------CCGTGCC-CGC------------------GTCCGTG-ATCAC--------TAT--------TCC---A--TCATTCT-----------------------AAAGGCAAACGTGTTTCATGAAATAATTCTAAAACAA----TT--TTATGT------GTATCTTACATTAGCAGTTTTAG--A-CTAAGGAAGAAAAAATA--TAAACC---AACAC---TGATCGATGCGTTCAGTTATTCAGAATCGC-ATACAATATGGTATA------TACTATCATTTAGTAAAGCAGCTTTTCCCCT-T------------------------ACTCAG-------------------------TT---------TAT--------------------------------CAGCTTTTTG---------TTGTGACTGC---AGC-T-T-----TTTA--AAGTTCTGTTTATCGTCAACGTGTCGTTCGTAAC-----------------TGAATATTCGCTCACTA-CG-CGA-GC-------GTCA------------------CGGACACGGATATTGACGCCGACACG-------GATCACTG----------------ACAAATGGA----ATGCTCCAACGTA-CTTCCAGTATGAGCGTTATTTT-ATTGGCGCGAACACGGA----TCACGGAC--gagcgtcttttgacattgtctgaacgttac
gi|6 : tacttaagATATATCCGTG-A-AAAAACAT---TAG--------TGA---AG-TCTTTCTTTTGT----GT-TT-TGGTTTTGAAAATTATAAAAGTTCCTTGGAACAAAACTAGAACAA----TT--CTATATGTACCGGTATCTGAACAGGGCAGCTTT--------GAGGATAGAAAAAAAACTAAGACGTTAACACCACTGGTGAATACTTTCGGTAATTAAAAATCGC-CTACAATATGGTATATAC-ATT-----CATTAAG----GGAGCTGGAACTCTGTGATT----A---GCA---------ATTCAGGTTTTCCCTCACCAGATTGATATGTTT---------T-T-------------A------------------CAGATTTC-----------TTTTGATTGC---AGC-T-T-----TTTgaacataata
gi|7 : AACACCGCTGGTGGATACGTTCAGTAATAAAGGTTTGC-CTTCAATATCGTAT------TTGCTACCGTTTAGTAAAGGAGCTGGAACTTTGTGATGA--A----G-A---------ATTTAGA----------------------ATTTGGCTCATTATATTA-----------A------------------CACGTTTA-----------TTGTGTTTGC---AAC-T-T-----TTTTTGAAGGCATGTTACTCGTCAACATGTTTTCCGTGATTG----GCCCGTGTGCGTGAAAAATCGCTTATTG-TG-CGATTC-------ATCA------------------CGAA------------------CATG-------GAT---------------------ACGGATt
gi|7 : CGTTTGTCCGTGATGCGTG-------------------------GTCT--ATGGC-CAAGTT--T----GTGATCCGTcacaaacttggccatagaccacgcatcacggacaaacg
gi|8 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgttttccgtgattggcccgtgtgcgtgaaaaatcgcttattgtgcgattcatcacgaacatggatCCGCTATTCCATTCATCCGTGATGTGT---------------------------TCC--GTGAAGCACAATA-T---AG--ATATAT-AA-CA------T--A----CATATATCCGTG-A-AG-----------------------------TCTTTCTTTTGTATTTGT-TT-GGGTTCCGAAAGGCAAACACGATCCTTGAAATAAAACTAGAATAA----TT--TAATAT------GCATTTAACCATGGTAGCTGTGATGATCCCAGGAAGGAAAAATA--TGAAACTAAAACATTGCT-GCCGATGCGTTC
gi|9 : ggCCGGTGGATATCTTCAGTAATTAAATATCGT-TTGCATTACAGTACA-A--ATTA--A--ATTAACTTAAGGAGCTGGGACTCTGTAAT-----A---A-A---------ATTC-GG----------------------GTTT---------TCCCTCAAATAATTCAA------------------AAGTTTTCCTAATATGTCTTTATG-TTTC---AGCTT-T-----TTTG--AAGGCACGTTTCT-GACCACGTGTCGTCCGTGGCTG----ATCCGTGTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333333333333333 111111 1111 3333333333 222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222 11111 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666 1111 9999999999999999999999999999999999999999 111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444444444444444 5 0 1 1 2 33 0 8888 55 1 111111 00 3 5 3 0 888 0000 88 2 0 4 0 1 9999999999 4 1 1 4 5 222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44 44444444444 777 4 4 44444 333 0 3 1 1 1 0000 66 5 5 8888888888888888888888888888888888888888888888888888888888888888888888888 2222 2 6 1 77 5 77 0 1111111111111111111111111111111111111111 333333 0 1
lowQualScore : ................................................................................................................................ ............... . . . . . .. . .... .. . ...... .. . . . . ... .... .. . . . . . .......... . . . . . ...... ........................................................................................ .. ........... ... . . ..... ... . . . . . .... .. . . ......................................................................... .... . . . .. . .. . ........................................ ...... . .
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 000000000000000 7 1 0 3 3 00 7 5555 55 1 555555 55 0 4 4 2 999 7777 33 2 1 4 1 9 1111111111 7 1 1 4 3 888888 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 00 55555555555 000 0 0 00000 222 1 7 1 1 4 6666 11 7 7 9999999999999999999999999999999999999999999999999999999999999999999999999 1111 2 7 0 99 7 99 4 3333333333333333333333333333333333333333 888888 6 0
consensus : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CCGTGATCCGTGAA-CGCT----T--C----CATATATCCGTG-A-AAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA---TTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATG-AAG-AATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CG-CGATTCGT-CACGAACA--------CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTA-TTTCCTNTATGAGCG--ATTT-TCAC--GGACGCGG--ACA-GGA-TCACGGAC--ACGNCTCACAG--------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
Reference ( family-2963 ) : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CNGTGATCCGTGAA-CGCT----T--T----CATATATCCGTG-A-AAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA--ATTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAAAG-AATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CG-CGATTCGT-CA-----A--------CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTA-TTTCCTNTATGAGCG--ATTT-TCAC--GGACGCGG--ACAAGAACTCA-GGAC--ACGNCTCACAG--------ACACGNATCACGNATCACGGACAAACGGAATAGCGGCC
gi|1 : TAATCCATTCGTCCGGGATGCGTGGTCCCTGCCCGTGCTCCGCACCCGTGTCCGTGTC-CGCGT-------CCGTGATGCGTGAA--GCTATATT--C----CATATCTCCGTA-T-AAA--------TATC-------TGTGAA---A--TCTTGCTTTTT----TGT-T--------CGAAATGCATACATGTTCGCCGAAACAAAACTATAACTACATGTTCGTAATAT------GTATGTAACCATGGCAACTGTGATGATCCGAGGACGGAAAAAGA--CAGAAAGGAAACATCACTGGTGGATCCGTTGAATAA-TAAAAATCGC-TTACTTTA--------A--AGTACTGTCAT----TTCA-GGAGCTGGAATTCTATTATG-AAG-AATTC-GT----------------------GTTTCTGTCAC--T---------------AC-------------ATTAATTCAAGTTTTAAACCGATTTTT-----------TTGTGATTGC---AAC-T-TA----TTTG--AAAGCA----------------------CGTGACTC----GTACGTACGCGTGAAATATCACTCACTG-TG-TACTTCAT-CATAAACG--------CGGAT--------------------ACG-------GGCGCGTTTCATGCATCACACATCACGGACGAATGAAATGTTCCATTGTA-TTTTTTATTTGAGCA--ATTT-TCAC--GCACGCGG--ACA-------A-GGAC--ACATCTCACAG--------ACACGGATCACGCATCACGAACAAATGGAATAG
gi|10 : ttaagctgg-------------A------------------CATATGTC-----------TTGTGATTGCTCCGG----T-----TGTG--TATGCTTGTTTCTCGCCAAATTGGCGTCCGTGACTG----GTCCGAGTGCGTGAAAAATTGCTCACCG-CG-CAATTCGT-CAAAAACA--------CGGATACGGACCTGGATAACGGATCACG-------G-----------------------ACAAATTGA----ATGCTCCAATGT--CTTCCTTCATGAACG--ATTT-TCAC--AGA
gi|11 : tcgAT-------------------CA-A-------G-----------------------CCGAATGGA----ATGCTCCAACATA-TTTTCTTTATGAGAG--ATTT-TCACGAGAACGCG-----------TCATGGACGGACGACGCATAGCGGACGAAACACGCATCACGTATCACGGACGAACAGA
gi|12 : TG--T--CTGTGATCC---AA-TGTT----C--CAC--CATATATCTGTA-A-----------------------TG----------TCTTTCTTTT-------T-TA-CA-TTTCGAAAGGCATACAAGTTACTTG------AACTACAAAAA----TT--TAATAT------GT
gi|13 : tgatgcctggtttaagTG--T--CTGTGATCC---AA-TGTT----CCAT----CATATATCTGTA-A-----------------------TG----------TCTTTCTTTT----------T-TGGTTTCGAAAGGCATACAAATTACTTG------AACTACAAAAA----TT--TAATAT------GTct
gi|14 : ttgtttaagCCGCTATACCATTCGCCCGTGATGCGTG-------------------------ACCCGTGTC-C----TAGGT--CCGT-ATGCGTGAA-CGC--------T----CATATA-----G-A-AAA--------CAC-----------------A--TTTTTGTTCT-----TGT-TT-ct
gi|15 : gggttaggTTT---------T---------------AC-------------A------------------TA--TTTC-----------TTGTAATTGC---AGC-T-TTCAAGTTTG--AAGGCAAATTT-TCGTCTACGT
gi|16 : ccaaattaataagttttCTTGAAATAAAACTAGATCGA----GT--TAATAT------GTATCTAACCCTGGCAGTTGTGGTAAACCTAGG-TAGAAAA
gi|17 : AAATCGC-CTACAGTATAGCTCATA--GT----ACAGTTTAGTTAA-AGGGCTGGTACTCTGTGATG-AAG-AATTC
gi|18 : tCCGCTATACCATTCGTCCGTGATGCGT
gi|2 : ttagtgaatcatgCCACTTTTCCATTCATCCCTGATGCGTG-------------------------GTCTGTGTC-CATGTTA--TTTCAGTGATCTGTGAAGCACT----T--TTA--CATATATCTGTG-A-AAAC-------TATC-------TG---GTACA--TCTTTCTTTTG----TGT-TT-CGGTTTGGAAAGGCAAATATGTTCCTTGAA-CAAAACTAGAATAA----TT--TAATAT------GTATCAAACTATGTAATCTTTGGTGATTCAAGGATGGAAAAAGA--CAAAATATAAACATCACTGATGGATACATTCA-TGATTAAAAATTGC-CTACAGTATGTTACATACCATTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTTGTAAAAG-AATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGGTTTC-----------TTGTGATTGC---AGC-T-T-----TTTC--AAGACATGTTTCTCTCCACCATGTCTTCTGTGAATG----GACCGTGTGTGTGAAAAATCACTCACTA-GG-CGATTTGT-CA-----G---------GGAT-------------------CACA-------G-----------------------GTGAATGGA----ATGCTGCAATGTA-TTTCCTGTACAAGCA--ATTT-TCAC--AGACGTAA--ACAA-----------------------AG--------ACA---A----GCATTATGGATAAATGGAATAGCAGCC
gi|3 : T----T--C----CATATATCCAGG-A-AAAAAAACCCATATCGGTTCCGTG---A---AGTTTTTTCATTTG----TGTGTTATACTTTGGAAAT---TGTTTGTTCCTTGAAAAAAACCCAGG--------TT--T--TAT------GTATCTA-------------TGATGATTTG----------------TAAAATACAAACACAGTTCGTGAATATGCTCAGTAATTAAAAAAAAAACTACAAAATTGTACATA------CAAACATTTAGTTAA-GGAGCTTGAACCCTGTTAAGAAAA-AAATCAGtca
gi|3 : TTT---------T---------------A--------------A------------------CAGATT-C-----------TTGCCAATGT---AGC-T-T-----TTTTTAAAGCCATGTTTCTGGTCAACGTGTCATCCGTGACTG----GTCCGTTTTCGTGAAAAACAGCTCACGGACGTTGATACGGACACGGGCA--------CGGAT-------------------CAAA-------G-----------------------AAGAATAGA----ATGTGCCAAAGTATTTTTCTAGATGAGCG--ATTT-TCAT--GAACGCGGATACGAAAACT----AAC--ACGCTTCACGG--------ACACGGATCCTGGATCAGGGACAAATGGAATAGCGaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcacggatcaaagaagaatagaatgtgccaaagtatttttctagatgagcgattttcatgaacgcggatacgaaaactaacacgcttcacggacacggatcctggatcagggacaaatggaatagcgtctttatag
gi|4 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtCCGCTTTTCCATTCGGCCTCGATGCGTT-------------------------GTTCGTGCC-CGCGT-A-----CGG-GATCCG-GAA-AACT----T--TGTCCCTTATATCCATGGA-AAA--------TATCCG-----TG---A---GG-TTTTTCTTTTG----TGC-TT----TTT------GCAAACATGTTCCTTAAAACCAAACAAGTACAA----TT--TAACAT------GTGTCGAACTATGGCAGTTTTGGTGATCCGAGGAC---------------ACGTAAACACCGCTGGTGGATACATTCAGTAAGTAAACATTGC-CTACAATATGGTACA------TACTACCATTAAGTTAA-ACAACTGGAACCCTGCAATG-ATG-AATTC--G----------------------ATTT---------TTTCCTATCCAAATCAAT-------------AAGTTTGTCA---------CAGCTTTC-----------TTGTGACTGC---AGC-TCT-----TTTT--CAGTCAGGTTTCTCGTCAACGTGTCGTTCTTGACTGGTCCGTCCGTGTGTGTGAAAAGTCGCTTACTT-TG-CTATTCGT-CACGT--AAAAGGATCCGAAT-------------------CGCA-------G-----------------------ACGAATAGA----Atctttatag
gi|5 : taaaatatatgCCGCTATTCCATTCGTCGGTGGTG------------------------------TTCGTGTC-CGCG--------------TCCGTGCC-CGC------------------GTCCGTG-ATCAC--------TAT--------TC---C---A--TCATTCT-----------------------AAAGGCAAACGTGTTTCATGAAATAATTCTAAAACAA----TT--TTATGT------GTATCTTACATTAGCAGTTTTA--GA-CTAAGGAAGAAAAAATA--TAAACC---AACA---CTGATCGATGCGTTCAGTTATTCAGAATCGC-ATACAATATGGTATA------TACTATCATTTAGTAAA-GCAGCTTTTCCCCT-T----------ACTCAG-------------------------TT---------T---------------AT--------------------------------CAGCTTTTTG---------TTGTGACTGC---AGC-T-T-----TTTA--AAGTTCTGTTTATCGTCAACGTGTCGTTCGTAAC-----------------TGAATATTCGCTCACTA-CG-CGA-GCGT-CACGGACA--------CGGATATTGACGCCGA--------CACGGATCACTG-----------------------ACAAATGGA----ATGCTCCAACGTA-CTTCCAGTATGAGCGTTATTT-T-AT--TGGCGCGA--ACACGGA-TCACGGAC--gagcgtcttttgacattgtctgaacgttac
gi|6 : tacttaagATATATCCGTG-A-AAAAA------CATTAG-----TG---A---AG-TCTTTCTTTTG----TGT-TT-TGGTTTTGAAAATTATAAAAGTTCCTTGGAACAAAACTAGAACAA----TT--CTATATGTACCGGTATCTGAACAGGGCAGCTTT--------GAGGATAGAAAAAAAACTAAGACGTTAACACCACTGGTGAATACTTTCGGTAATTAAAAATCGC-CTACAATATGGTATATA----------CATTCA-TTAAGGGAGCTGGAACTCTGTGATT--AGCAATTCAGGTTTTCCCTCACCAGATTGATATGTTT---------T----------------T-------------A------------------CAGATTTC-----------TTTTGATTGC---AGC-T-T-----TTTgaacataata
gi|7 : AACACCGCTGGTGGATACGTTCAGTAATAAAGGTTTGC-CTTCAATATCGTAT------TTGCTACCGTTTAGTAAA-GGAGCTGGAACTTTGTGATGAA-G-AATTTAGA----------------------ATTTGGCTCATTAT---------------ATTA-----------A------------------CACGTTTA-----------TTGTGTTTGC---AAC-T-T-----TTTTTGAAGGCATGTTACTCGTCAACATGTTTTCCGTGATTG----GCCCGTGTGCGTGAAAAATCGCTTATTG-TG-CGATTCAT-CACGAACA--------TGGAT--------------------ACG-------G-----------------------At
gi|7 : TGTGCG--ATTCATCAC--GAACATGG--ATACGGA-TCACAAAC--TTGGC-CATAG--------AC------CACGCATCACGGACAAACGtcacaaacttggccatagaccacgcatcacggacaaacg
gi|8 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgttttccgtgattggcccgtgtgcgtgaaaaatcgcttatCCGCTATTCCATTCATCCGTGATGTGT---------------------------TCCGTGAAGCACAATA--T--A---GATATAT-AA-CA------T--A----CATATATCCGTG-A----------------------------A---G--TCTTTCTTTTGTATTTGT-TT-GGGTTCCGAAAGGCAAACACGATCCTTGAAATAAAACTAGAATAA----TT--TAATAT------GCATTTAACCATGGTAGCTGTGATGATCCCAGGAAGGAAAAATA--TGAAACTAAAACATTGCT-GCCGATGCGTTC
gi|9 : ggCCGGTGGATATCTTCAGTAATTAAATATCGT-TTGCATTACAGTACA-A--ATTA--A--ATTAACTTAA-GGAGCTGGGACTCTGTAAT---AA-AATTC-GG----------------------GTTT---------T---------------CCCTCAAATAATTCAA------------------AAGTTTTCCTAATATGTCTTTATG-TTTC---AGCTT-T-----TTTG--AAGGCACGTTTCT-GACCACGTGTCGTCCGTGGCTG----ATCCGTGTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777 444444444444444444444444444444444444444 8888888888888888888888888888888888 333333333333333 111111 1111 333333333333 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222 11111 111 1111 11111 000000000000000000000000000000000000000000000000000000 1111 555555555555555555555555555555555 111111
lowQualScore : 444444444444444444444444444 6 3 444444444444444444444444444444444444444 2 4 9999999999999999999999999999999999 444444444444444 5 0 1 1 2 33 0 8888 55 1 111111 00 3 5 3 0 888 0000 88 2 0 4 1 222222222222 1 1 4 5 2 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 44 44444444444 777 4 4 44444 333 0 3 1 1 1 0000 66 5 5 3 88 44444 777777777777777777777777777777777777777777777777777777 2222 2 6 1 77 5 77 0 3 000000000000000000000000000000000 222222 0
lowQualScore : ........................... . . ....................................... . . .................................. ............... . . . . . .. . .... .. . ...... .. . . . . ... .... .. . . . . ............ . . . . . . ........................................................................................ .. ........... ... . . ..... ... . . . . . .... .. . . . .. ..... ...................................................... .... . . . .. . .. . . ................................. ...... .
lowQualScore : 333333333333333333333333333 7 7 777777777777777777777777777777777777777 3 0 8888888888888888888888888888888888 000000000000000 7 1 0 3 3 00 7 5555 55 1 555555 55 0 4 4 2 999 7777 33 2 1 4 9 666666666666 1 1 4 3 9 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 55555555555 000 0 0 00000 222 1 7 1 1 4 6666 11 7 7 0 00 33333 888888888888888888888888888888888888888888888888888888 1111 2 7 0 99 7 99 4 7 555555555555555555555555555555555 222222 6
consensus : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CCGTGATCCGTGAA-CGCT----T----C--CATATATCCGTG-AAAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA----TACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CGC-GATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTATTTC-CTNTATGAGCG--ATTT-TCAC--GGACGCGGACA-GGATCACGGAC--ACGNCTCACAG--------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
Reference ( family-2963 ) : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CCGTGATCCGTGAA-CGCT----T----C--CATATATCCGTG-AAAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA---TTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CGC-GATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTATTTC-CTNTATGAGCG--ATTT-TCAC--GGACGCGGACA-GGATCACGGAC--ACGNCTCACAG--------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
gi|1 : TAATCCATTCGTCCGGGATGCGTGGTCCCTGCCCGTGCTCCGCACCCGTGTCCGTGTC-CGCGT-------CCGTGATGCGTGAA--GCTATATT----C--CATATCTCCGTA-TAAA--------TATC-------TGTGAA---A--TCTTGCTTTTT----TGT-T--------CGAAATGCATACATGTTCGCCGAAACAAAACTATAACTACATGTTCGTAATAT------GTATGTAACCATGGCAACTGTGATGATCCGAGGACGGAAAAAGA--CAGAAAGGAAACATCACTGGTGGATCCGTTGAATAA-TAAAAATCGC-TTAC-------TTTAAA---GTACTGTCAT----TTCA-GGAGCTGGAATTCTATTATGAA-GAATTC-GT----------------------GTTTCTGTCAC--T---------------AC-------------ATTAATTCAAGTTTTAAACCGATTTTT-----------TTGTGATTGC---AAC-T-TA----TTTG--AAAGCA----------------------CGTGACTC----GTACGTACGCGTGAAATATCACTCACTG-TGT-ACTTCAT-CATA-AACG-----CGGAT--------------------ACG-------GGCGCGTTTCATGCATCACACATCACGGACGAATGAAATGTTCCATTGTATTTT-TTATTTGAGCA--ATTT-TCAC--GCACGCGGACA-A------GGAC--ACATCTCACAG--------ACACGGATCACGCATCACGAACAAATGGAATAG
gi|10 : ttaagctgg-------------A------------------CATATGTC-----------TTGTGATTGCTCCGG----T-----TGTG--TATGCTTGTTTCTCGCCAAATTGGCGTCCGTGACTG----GTCCGAGTGCGTGAAAAATTGCTCACCG-CGC-AATTCGT-CAAA-AACA-----CGGATACGGACCTGGATAACGGATCACG-------G-----------------------ACAAATTGA----ATGCTCCAATGT-CTTC-CTTCATGAACG--ATTT-TCAC--AGA
gi|11 : tcgAT-------------------CA-A-------G-----------------------CCGAATGGA----ATGCTCCAACATATTTT-CTTTATGAGAG--ATTT-TCACGAGAACGCG--------TCATGGACGGACGACGCATAGCGGACGAAACACGCATCACGTATCACGGACGAACAGA
gi|12 : TG--T--CTGTGATCC---AA-TGTT----C----CACCATATATCTGTA-A----------------------TG----------TCTTTCTTTT-------T-TA-CA-TTTCGAAAGGCATACAAGTTACTTG------AACTACAAAAA----TT--TAATAT------GT
gi|13 : tgatgcctggtttaagTG--T--CTGTGATCC---AA-TGTT----C----CATCATATATCTGTA-A----------------------TG----------TCTTTCTTTT----------T-TGGTTTCGAAAGGCATACAAATTACTTG------AACTACAAAAA----TT--TAATAT------GTct
gi|14 : ttgtttaagCCGCTATACCATTCGCCCGTGATGCGTG-------------------------ACCCGTGTC-C----TAGGT--CCGT-ATGCGTGAA-CGCT------------CATATA-----G-AAAA--------CAC-----------------A--TTTTTGTTCT-----TGT-TT-ct
gi|15 : gggttaggTTT---------T---------------AC-------------A------------------TA--TTTC-----------TTGTAATTGC---AGC-T-TTCAAGTTTG--AAGGCAAATTT-TCGTCTACGT
gi|16 : ccaaattaataagttttCTTGAAATAAAACTAGATCGA----GT--TAATAT------GTATCTAACCCTGGCAGTTGTGGTAAACCTAGG-TAGAAAA
gi|17 : AAATCGC-CTACAGTATAGCTCATA---GTAC-A--GTTTAGTTAA-AGGGCTGGTACTCTGTGATGAA-GAATTC
gi|18 : tCCGCTATACCATTCGTCCGTGATGCGT
gi|2 : ttagtgaatcatgCCACTTTTCCATTCATCCCTGATGCGTG-------------------------GTCTGTGTC-CATGTTA--TTTCAGTGATCTGTGAAGCACT----T----TTACATATATCTGTG-AAAAC-------TATC-------TG---GTACA--TCTTTCTTTTG----TGT-TT-CGGTTTGGAAAGGCAAATATGTTCCTTGAA-CAAAACTAGAATAA----TT--TAATAT------GTATCAAACTATGTAATCTTTGGTGATTCAAGGATGGAAAAAGA--CAAAATATAAACATCACTGATGGATACATTCA-TGATTAAAAATTGC-CTACAGTATGTTACATACCATTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTTGTAAAAGAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGGTTTC-----------TTGTGATTGC---AGC-T-T-----TTTC--AAGACATGTTTCTCTCCACCATGTCTTCTGTGAATG----GACCGTGTGTGTGAAAAATCACTCACTA-GGC-GATTTGT-CA-G-----------GGAT-------------------CACA-------G-----------------------GTGAATGGA----ATGCTGCAATGTATTTC-CTGTACAAGCA--ATTT-TCAC--AGACGTAAACA-A---------------------AG--------ACA---A----GCATTATGGATAAATGGAATAGCAGCC
gi|3 : T----T----C--CATATATCCAGG-AAAAAAAACCCATATCGGTTCCGTG---A---AGTTTTTTCATTTG----TGTGTTATACTTTGGAAAT---TGTTTGTTCCTTGAAAAAAACCCAGG--------TT--T--TAT------GTATCTA-------------TGATGATTTG----------------TAAAATACAAACACAGTTCGTGAATATGCTCAGTAATTAAAAAAAAAACTACAAAATTGTACATA------CAAACATTTAGTTAA-GGAGCTTGAACCCTGTTAAGAA-AAAtca
gi|3 : TTT---------T---------------A--------------A------------------CAGATT-C-----------TTGCCAATGT---AGC-T-T-----TTTTTAAAGCCATGTTTCTGGTCAACGTGTCATCCGTGACTG----GTCCGTTTTCGTGAAAAACAGCTCACGGACGTTGATACGGACACG-GGCA-----CGGAT-------------------CAAA-------G-----------------------AAGAATAGA----ATGTGCCAAAGTATTTTTCTAGATGAGCG--ATTT-TCAT--GAACGCGGATA-CGAAAACTAAC--ACGCTTCACGG--------ACACGGATCCTGGATCAGGGACAAATGGAATAGCGaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcacggatcaaagaagaatagaatgtgccaaagtatttttctagatgagcgattttcatgaacgcggatacgaaaactaacacgcttcacggacacggatcctggatcagggacaaatggaatagcgtctttatag
gi|4 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtCCGCTTTTCCATTCGGCCTCGATGCGTT-------------------------GTTCGTGCC-CGCGT-A------CGGGATCCG-GAA-AACT----TTGTCC--CTTATATCCATGGAAAA--------TATCCG-----TG---A---GG-TTTTTCTTTTG----TGC-TT----TTT------GCAAACATGTTCCTTAAAACCAAACAAGTACAA----TT--TAACAT------GTGTCGAACTATGGCAGTTTTGGTGATCCGAGGAC---------------ACGTAAACACCGCTGGTGGATACATTCAGTAAGTAAACATTGC-CTACAATATGGTACA------TACTACCATTAAGTTAA-ACAACTGGAACCCTGCAATGAT-GAATTC--G----------------------ATTT---------TTTCCTATCCAAATCAAT-------------AAGTTTGTCA---------CAGCTTTC-----------TTGTGACTGC---AGC-TCT-----TTTT--CAGTCAGGTTTCTCGTCAACGTGTCGTTCTTGACTGGTCCGTCCGTGTGTGTGAAAAGTCGCTTACTT-TGC-TATTCGT-CACGTAAAAGGATCCGAAT-------------------CGCA-------G-----------------------ACGAATAGA----Atctttatag
gi|5 : taaaatatatgCCGCTATTCCATTCGTCGGTGGTG------------------------------TTCGTGTC-CGCG--------------TCCGTGCC-CGCG----T----C--CGTG-ATC-------AC--------TAT--------TC---C---A--TCATTCT-----------------------AAAGGCAAACGTGTTTCATGAAATAATTCTAAAACAA----TT--TTATGT------GTATCTTACATTAGCAGTTTTA--GA-CTAAGGAAGAAAAAATA--TAAACC---AACA---CTGATCGATGCGTTCAGTTATTCAGAATCGC-ATACAATATGGTATA------TACTATCATTTAGTAAA-GCAGCTTTTCCCCT-T---------ACTCAG-------------------------TT---------T---------------AT--------------------------------CAGCTTTTTG---------TTGTGACTGC---AGC-T-T-----TTTA--AAGTTCTGTTTATCGTCAACGTGTCGTTCGTAAC-----------------TGAATATTCGCTCACTA-CGC-GA-GCGT-CACG-GACA-----CGGATATTGACGCCGA--------CACGGATCACTG-----------------------ACAAATGGA----ATGCTCCAACGTACTTC-CAGTATGAGCGTTATTT-T-AT--TGGCGCGAACACGGATCACGGAC--gagcgtcttttgacattgtctgaacgttac
gi|6 : tacttaagATATATCCGTG-AAAAAA------CATTAG-----TG---A---AG-TCTTTCTTTTG----TGT-TT-TGGTTTTGAAAATTATAAAAGTTCCTTGGAACAAAACTAGAACAA----TT--CTATATGTACCGGTATCTGAACAGGGCAGCTTT--------GAGGATAGAAAAAAAACTAAGACGTTAACACCACTGGTGAATACTTTCGGTAATTAAAAATCGC-CTACAATATGGTATATA----------CATTCA-TTAAGGGAGCTGGAACTCTGTGATTAG-CAATTCAGGTTTTCCCTCACCAGATTGATATGTTT---------T----------------T-------------A------------------CAGATTTC-----------TTTTGATTGC---AGC-T-T-----TTTgaacataata
gi|7 : AACACCGCTGGTGGATACGTTCAGTAATAAAGGTTTGC-CTTCAATATCGTAT------TTGCTACCGTTTAGTAAA-GGAGCTGGAACTTTGTGATGAA-GAATTTAGA----------------------ATTTGGCTCATTAT---------------ATTA-----------A------------------CACGTTTA-----------TTGTGTTTGC---AAC-T-T-----TTTTTGAAGGCATGTTACTCGTCAACATGTTTTCCGTGATTG----GCCCGTGTGCGTGAAAAATCGCTTATTG-TGC-GATTCAT-CACG-AACA-----TGGAT--------------------ACG-------G-----------------------At
gi|7 : TGTGCG--ATTCATCAC--GAACATGGATACGGATCACAAAC--TTGGC-CATAG--------AC------CACGCATCACGGACAAACGtcacaaacttggccatagaccacgcatcacggacaaacg
gi|8 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgttttccgtgattggcccgtgtgcgtgaaaaatcgcttatCCGCTATTCCATTCATCCGTGATGTGT---------------------------TCCGTGAAGCACAATA--T--A---GATATAT-AA-CA------T----A--CATATATCCGTG-A---------------------------A---G--TCTTTCTTTTGTATTTGT-TT-GGGTTCCGAAAGGCAAACACGATCCTTGAAATAAAACTAGAATAA----TT--TAATAT------GCATTTAACCATGGTAGCTGTGATGATCCCAGGAAGGAAAAATA--TGAAACTAAAACATTGCT-GCCGATGCGTTC
gi|9 : ggCCGGTGGATATCTTCAGTAATTAAATATCGT-TTGCATTACAGTACAAA---TTA--A--ATTAACTTAA-GGAGCTGGGACTCTGTAAT--A-AAATTC-GG----------------------GTTT---------T---------------CCCTCAAATAATTCAA------------------AAGTTTTCCTAATATGTCTTTATG-TTTC---AGCTT-T-----TTTG--AAGGCACGTTTCT-GACCACGTGTCGTCCGTGGCTG----ATCCGTGTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777 444444444444444444444444444444444444444 8888888888888888888888888888888888 333333333333333 111111 1111 222222222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222 11111 111 1111 11111 000000000000000000000000000000000000000000000000000000 1111 555555555555555555555555555555555 111111
lowQualScore : 444444444444444444444444444 6 3 444444444444444444444444444444444444444 2 4 9999999999999999999999999999999999 444444444444444 5 0 1 1 2 33 0 8888 55 1 111111 00 3 5 3 0 888 0000 88 2 0 4 0 0 222222222222 4 1 1 4 5 2 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 44 44444444444 777 4 4 44444 333 0 3 1 1 1 0000 66 5 5 3 88 44444 777777777777777777777777777777777777777777777777777777 2222 2 6 1 77 5 77 0 3 000000000000000000000000000000000 222222 0
lowQualScore : ........................... . . ....................................... . . .................................. ............... . . . . . .. . .... .. . ...... .. . . . . ... .... .. . . . . . ............ . . . . . . . ........................................................................................ .. ........... ... . . ..... ... . . . . . .... .. . . . .. ..... ...................................................... .... . . . .. . .. . . ................................. ...... .
lowQualScore : 333333333333333333333333333 7 7 777777777777777777777777777777777777777 3 0 8888888888888888888888888888888888 000000000000000 7 1 0 3 3 00 7 5555 55 1 555555 55 0 4 4 2 999 7777 33 2 1 4 1 9 888888888888 7 1 1 4 3 9 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 55555555555 000 0 0 00000 222 1 7 1 1 4 6666 11 7 7 0 00 33333 888888888888888888888888888888888888888888888888888888 1111 2 7 0 99 7 99 4 7 555555555555555555555555555555555 222222 6
consensus : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CCGTGATCCGTGAA-CGCT----T----C--CATATATCCGTG-AAAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA----TACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CGC-GATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTATTTC-CTNTATGAGCG--ATTT-TCAC--GGACGCGGACA-GGATCACGGAC--ACGNCTCACAG--------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
Reference ( family-2963 ) : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CCGTGATCCGTGAA-CGCT----T----C--CATATATCCGTG-AAAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA----TACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CGC-GATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTATTTC-CTNTATGAGCG--ATTT-TCAC--GGACGCGGACA-GGATCACGGAC--ACGNCTCACAG--------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
gi|1 : TAATCCATTCGTCCGGGATGCGTGGTCCCTGCCCGTGCTCCGCACCCGTGTCCGTGTC-CGCGT-------CCGTGATGCGTGAA--GCTATATT----C--CATATCTCCGTA-TAAA--------TATC-------TGTGAA---A--TCTTGCTTTTT----TGT-T--------CGAAATGCATACATGTTCGCCGAAACAAAACTATAACTACATGTTCGTAATAT------GTATGTAACCATGGCAACTGTGATGATCCGAGGACGGAAAAAGA--CAGAAAGGAAACATCACTGGTGGATCCGTTGAATAA-TAAAAATCGC-TTACTTTAAAG----------TACTGTCAT----TTCA-GGAGCTGGAATTCTATTATGAA-GAATTC-GT----------------------GTTTCTGTCAC--T---------------AC-------------ATTAATTCAAGTTTTAAACCGATTTTT-----------TTGTGATTGC---AAC-T-TA----TTTG--AAAGCA----------------------CGTGACTC----GTACGTACGCGTGAAATATCACTCACTG-TGT-ACTTCAT-CATA-AACG-----CGGAT--------------------ACG-------GGCGCGTTTCATGCATCACACATCACGGACGAATGAAATGTTCCATTGTATTTT-TTATTTGAGCA--ATTT-TCAC--GCACGCGGACA-A------GGAC--ACATCTCACAG--------ACACGGATCACGCATCACGAACAAATGGAATAG
gi|10 : ttaagctgg-------------A------------------CATATGTC-----------TTGTGATTGCTCCGG----T-----TGTG--TATGCTTGTTTCTCGCCAAATTGGCGTCCGTGACTG----GTCCGAGTGCGTGAAAAATTGCTCACCG-CGC-AATTCGT-CAAA-AACA-----CGGATACGGACCTGGATAACGGATCACG-------G-----------------------ACAAATTGA----ATGCTCCAATGT-CTTC-CTTCATGAACG--ATTT-TCAC--AGA
gi|11 : tcgAT-------------------CA-A-------G-----------------------CCGAATGGA----ATGCTCCAACATATTTT-CTTTATGAGAG--ATTT-TCACGAGAACGCG--------TCATGGACGGACGACGCATAGCGGACGAAACACGCATCACGTATCACGGACGAACAGA
gi|12 : TG--T--CTGTGATCC---AA-TGTT----C----CACCATATATCTGTA-A----------------------TG----------TCTTTCTTTT-------T-TA-CA-TTTCGAAAGGCATACAAGTTACTTG------AACTACAAAAA----TT--TAATAT------GT
gi|13 : tgatgcctggtttaagTG--T--CTGTGATCC---AA-TGTT----C----CATCATATATCTGTA-A----------------------TG----------TCTTTCTTTT----------T-TGGTTTCGAAAGGCATACAAATTACTTG------AACTACAAAAA----TT--TAATAT------GTct
gi|14 : ttgtttaagCCGCTATACCATTCGCCCGTGATGCGTG-------------------------ACCCGTGTC-C----TAGGT--CCGT-ATGCGTGAA-CGCT------------CATATA-----G-AAAA--------CAC-----------------A--TTTTTGTTCT-----TGT-TT-ct
gi|15 : gggttaggTTT---------T---------------AC-------------A------------------TA--TTTC-----------TTGTAATTGC---AGC-T-TTCAAGTTTG--AAGGCAAATTT-TCGTCTACGT
gi|16 : ccaaattaataagttttCTTGAAATAAAACTAGATCGA----GT--TAATAT------GTATCTAACCCTGGCAGTTGTGGTAAACCTAGG-TAGAAAA
gi|17 : AAATCGC-CTACAGTATAGCTCATA----G--TACAGTTTAGTTAA-AGGGCTGGTACTCTGTGATGAA-GAATTC
gi|18 : tCCGCTATACCATTCGTCCGTGATGCGT
gi|2 : ttagtgaatcatgCCACTTTTCCATTCATCCCTGATGCGTG-------------------------GTCTGTGTC-CATGTTA--TTTCAGTGATCTGTGAAGCACT----T----TTACATATATCTGTG-AAAAC-------TATC-------TG---GTACA--TCTTTCTTTTG----TGT-TT-CGGTTTGGAAAGGCAAATATGTTCCTTGAA-CAAAACTAGAATAA----TT--TAATAT------GTATCAAACTATGTAATCTTTGGTGATTCAAGGATGGAAAAAGA--CAAAATATAAACATCACTGATGGATACATTCA-TGATTAAAAATTGC-CTACAGTATGTTACATACCATTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTTGTAAAAGAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGGTTTC-----------TTGTGATTGC---AGC-T-T-----TTTC--AAGACATGTTTCTCTCCACCATGTCTTCTGTGAATG----GACCGTGTGTGTGAAAAATCACTCACTA-GGC-GATTTGT-CA-G-----------GGAT-------------------CACA-------G-----------------------GTGAATGGA----ATGCTGCAATGTATTTC-CTGTACAAGCA--ATTT-TCAC--AGACGTAAACA-A---------------------AG--------ACA---A----GCATTATGGATAAATGGAATAGCAGCC
gi|3 : T----T----C--CATATATCCAGG-AAAAAAAACCCATATCGGTTCCGTG---A---AGTTTTTTCATTTG----TGTGTTATACTTTGGAAAT---TGTTTGTTCCTTGAAAAAAACCCAGG--------TT--T--TAT------GTATCTA-------------TGATGATTTG----------------TAAAATACAAACACAGTTCGTGAATATGCTCAGTAATTAAAAAAAAAACTACAAAATTGTACATA----CA--AACATTTAGTTAA-GGAGCTTGAACCCTGTTAAGAA-AAAtca
gi|3 : TTT---------T---------------A--------------A------------------CAGATT-C-----------TTGCCAATGT---AGC-T-T-----TTTTTAAAGCCATGTTTCTGGTCAACGTGTCATCCGTGACTG----GTCCGTTTTCGTGAAAAACAGCTCACGGACGTTGATACGGACACG-GGCA-----CGGAT-------------------CAAA-------G-----------------------AAGAATAGA----ATGTGCCAAAGTATTTTTCTAGATGAGCG--ATTT-TCAT--GAACGCGGATA-CGAAAACTAAC--ACGCTTCACGG--------ACACGGATCCTGGATCAGGGACAAATGGAATAGCGaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcacggatcaaagaagaatagaatgtgccaaagtatttttctagatgagcgattttcatgaacgcggatacgaaaactaacacgcttcacggacacggatcctggatcagggacaaatggaatagcgtctttatag
gi|4 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtCCGCTTTTCCATTCGGCCTCGATGCGTT-------------------------GTTCGTGCC-CGCGT-A------CGGGATCCG-GAA-AACT----TTGTCC--CTTATATCCATGGAAAA--------TATCCG-----TG---A---GG-TTTTTCTTTTG----TGC-TT----TTT------GCAAACATGTTCCTTAAAACCAAACAAGTACAA----TT--TAACAT------GTGTCGAACTATGGCAGTTTTGGTGATCCGAGGAC---------------ACGTAAACACCGCTGGTGGATACATTCAGTAAGTAAACATTGC-CTACAATATGGTAC--A----TACTACCATTAAGTTAA-ACAACTGGAACCCTGCAATGAT-GAATTC--G----------------------ATTT---------TTTCCTATCCAAATCAAT-------------AAGTTTGTCA---------CAGCTTTC-----------TTGTGACTGC---AGC-TCT-----TTTT--CAGTCAGGTTTCTCGTCAACGTGTCGTTCTTGACTGGTCCGTCCGTGTGTGTGAAAAGTCGCTTACTT-TGC-TATTCGT-CACGTAAAAGGATCCGAAT-------------------CGCA-------G-----------------------ACGAATAGA----Atctttatag
gi|5 : taaaatatatgCCGCTATTCCATTCGTCGGTGGTG------------------------------TTCGTGTC-CGCG--------------TCCGTGCC-CGCG----T----C--CGTG-ATC-------AC--------TAT--------TC---C---A--TCATTCT-----------------------AAAGGCAAACGTGTTTCATGAAATAATTCTAAAACAA----TT--TTATGT------GTATCTTACATTAGCAGTTTTA--GA-CTAAGGAAGAAAAAATA--TAAACC---AACA---CTGATCGATGCGTTCAGTTATTCAGAATCGC-ATACAATATGGT--ATA----TACTATCATTTAGTAAA-GCAGCTTTTCCCCT-T---------ACTCAG-------------------------TT---------T---------------AT--------------------------------CAGCTTTTTG---------TTGTGACTGC---AGC-T-T-----TTTA--AAGTTCTGTTTATCGTCAACGTGTCGTTCGTAAC-----------------TGAATATTCGCTCACTA-CGC-GA-GCGT-CACG-GACA-----CGGATATTGACGCCGA--------CACGGATCACTG-----------------------ACAAATGGA----ATGCTCCAACGTACTTC-CAGTATGAGCGTTATTT-T-AT--TGGCGCGAACACGGATCACGGAC--gagcgtcttttgacattgtctgaacgttac
gi|6 : tacttaagATATATCCGTG-AAAAAA------CATTAG-----TG---A---AG-TCTTTCTTTTG----TGT-TT-TGGTTTTGAAAATTATAAAAGTTCCTTGGAACAAAACTAGAACAA----TT--CTATATGTACCGGTATCTGAACAGGGCAGCTTT--------GAGGATAGAAAAAAAACTAAGACGTTAACACCACTGGTGAATACTTTCGGTAATTAAAAATCGC-CTACAATATGGTATATA----------CATTCA-TTAAGGGAGCTGGAACTCTGTGATTAG-CAATTCAGGTTTTCCCTCACCAGATTGATATGTTT---------T----------------T-------------A------------------CAGATTTC-----------TTTTGATTGC---AGC-T-T-----TTTgaacataata
gi|7 : AACACCGCTGGTGGATACGTTCAGTAATAAAGGTTTGC-CTTCAATATCGTA--TT----TGCTACCGTTTAGTAAA-GGAGCTGGAACTTTGTGATGAA-GAATTTAGA----------------------ATTTGGCTCATTAT---------------ATTA-----------A------------------CACGTTTA-----------TTGTGTTTGC---AAC-T-T-----TTTTTGAAGGCATGTTACTCGTCAACATGTTTTCCGTGATTG----GCCCGTGTGCGTGAAAAATCGCTTATTG-TGC-GATTCAT-CACG-AACA-----TGGAT--------------------ACG-------G-----------------------At
gi|7 : TGTGCG--ATTCATCAC--GAACATGGATACGGATCACAAAC--TTGGC-CATAG--------AC------CACGCATCACGGACAAACGtcacaaacttggccatagaccacgcatcacggacaaacg
gi|8 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgttttccgtgattggcccgtgtgcgtgaaaaatcgcttatCCGCTATTCCATTCATCCGTGATGTGT---------------------------TCCGTGAAGCACAATA--T--A---GATATAT-AA-CA------T----A--CATATATCCGTG-A---------------------------A---G--TCTTTCTTTTGTATTTGT-TT-GGGTTCCGAAAGGCAAACACGATCCTTGAAATAAAACTAGAATAA----TT--TAATAT------GCATTTAACCATGGTAGCTGTGATGATCCCAGGAAGGAAAAATA--TGAAACTAAAACATTGCT-GCCGATGCGTTC
gi|9 : ggCCGGTGGATATCTTCAGTAATTAAATATCGT-TTGCATTACAGTACAAA----T--TA-AATTAACTTAA-GGAGCTGGGACTCTGTAAT--A-AAATTC-GG----------------------GTTT---------T---------------CCCTCAAATAATTCAA------------------AAGTTTTCCTAATATGTCTTTATG-TTTC---AGCTT-T-----TTTG--AAGGCACGTTTCT-GACCACGTGTCGTCCGTGGCTG----ATCCGTGTG
blockSeqs : GA G A TTATTTCAGTGATCTGTGAAGCACTTTTA T G AAAAAAACCCATATCGGTTCCGTGAAGT GTATTTGTTTGGG C T A A AT . . A GTACCG G G A ATG AAAC AT T A ACATACCATTAC C T G G G G A GATTTTTTCCTATCCAAATCAATAAGTTTGTCA TA CTAATATGTCT TCC T C TCAAG TTA T C C G GTCC AC T A A TA GGATC ACGGACCTGGATAACGGATCACGG . T T T TT A GA A TCATGGACGGACGACGCATAGCGGACGAA ACGCAT
blockSeqs : GG . G TACGGGATCCGGAAAACTTTGTCC T . AAAAACATTAGTGAAG GTGTGTTATAC C T A A AA . . A . T G T AAG GA AC C . ACATACA C T G . T A . AGGTTTTCCCTCACCAGATTGATATGTTTTTA GG TG . . . . TTG A C C T . C . . C A . ATTGACGCCGACACGGATCACTG . C . T . . . G CGAAAACTAACACGCTTCACGG ACGGAT
blockSeqs : TG . G TAGGTCCGTATGCGTGAACGCT T . AAACTATCTGGTACA GTGTTTCGG G A T A AC . . A . T A T ATA TA GT C . TCATAG A T G . T G . GGGTTTTCCCTCAAATAATTCAA GA . . . . . G T C C A . G . . C G . CACAG . T . G . . . A CGGATCACAAACTTGGCCATAG AA
blockSeqs : . . A ATATAGATATATAACATA C . AAATATCCGTGAGG GTGTTTTGG G T T A AT . . A . T G T AAG TA GT C . ACATAC C A G . A G . AGAATTTGGCTCATTATATTAA GC . . . . . G T C G G . T . . C G . CAAAG . A . A . . . G AAG .
blockSeqs : . . . TCCGTGCCCGCGTC C . ACTATTCCA GTGCTT T A T A AC . . A . T A T TA . TA C . ATATAC T T G . G T . AGGGTTTTACA GC . . . . . C G A C G . C . . C A . CGCAG . C . G . . . .
blockSeqs : C . AAACACA TTACA C A T G AT . . T . G . . AC . . T . ATTTGC C C G . G G . AGTTTAT GA . . . . . T T C C T . T . . . . . CAAG . . . .
blockSeqs : C . TG TTGG . T A A C . . T . . . . . . . ACAAAT . T C . A . . CG . . . . . A T C C G . ACGG
blockSeqs : . . TG . . A C . . . . A . . ATATA . A . . . . . GT . . . . . G C . .
blockSeqs : . . AG . . . . . . . . . . . .
blockSeqCons : GG************************* TAGATCCGTATCCGGAACGCC****************** AAATATCGTAG*********************** GTGTTTNGG****** **** ** ACATAC****** ***** **** CGGNACAGCTGCGG*******************
originalCons : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCCGTGTC-CGCGTTA--T--CCGTGATCCGTGAA-CGCT----T----C--CATATATCCGTG-AAAA--------TATC-------TG---A---A--TCTTTCTTTTG----TGT-TT-CGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATA----TACTACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CGC-GATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTATTTC-CTNTATGAGCG--ATTT-TCAC--GGACGCGGACA-GGATCACGGAC--ACGNCTCACAG--------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
finalCons : CCGCTATTCCATTCGTCCGTGATGCGTGG-------------------------TCCGTGTC-CGCGTAGATCCGTATCCGGAACGCC------------------CATATATCCGTG-AAAATATCGTAG-----------------------TCTTTCTTTTGTGTTTNGG------TTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATAC------TACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CGC-GATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTATTTC-CTNTATGAGCG--ATTT-TCAC--GGACGCGGACACGGNACAGCTGCGG-------------------ACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111 111111 1111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222 11111 111 1111 11111 000000000000000000000000000000000000000000000000000000 1111 11111 88888888888888888888888888
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 444444444444444 4 1 0 1 2 33 0 8888 55 1 111111 00 3 0 3 0 888 0000 88 1 0 4 0 1 2222222 4 1 1 4 5 2 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 44 44444444444 777 4 4 44444 333 0 3 1 1 1 0000 66 5 5 3 88 44444 777777777777777777777777777777777777777777777777777777 2222 2 6 1 77 5 77 0 66666 99 2 99999999999999999999999999 3 3 0
lowQualScore : ..................................................................................................................................... ............... . . . . . .. . .... .. . ...... .. . . . . ... .... .. . . . . . ....... . . . . . . . ........................................................................................ .. ........... ... . . ..... ... . . . . . .... .. . . . .. ..... ...................................................... .... . . . .. . .. . ..... .. . .......................... . . .
lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 777777777777777 7 0 1 3 3 00 7 5555 55 1 555555 55 0 1 4 2 999 7777 33 4 1 4 1 9 9999999 7 1 1 4 3 9 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 55555555555 000 0 0 00000 222 1 7 1 1 4 6666 11 7 7 0 00 33333 888888888888888888888888888888888888888888888888888888 1111 2 7 0 99 7 99 4 77777 22 5 77777777777777777777777777 2 8 6
consensus : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCC--GTGT----CCGCGT-A--TCC---GT-ATCCGTG-----AA-----CG-C------C----CATATA---TCCGTG-A-AAA-----TATC--GT--A--GTCTTTCTTTTGT----GT-TT-GGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATAC------TACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CG-CGATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTA-TTTCCTNTATGAGCG--ATTT-TCAC--GGACGC-----GGAC--ACG--G-----A--ACA-G-CT--A-CG-GACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
Reference ( family-2963 ) : CCGCTATTCCATTCGTCCGTGATGCGTG-------------------------GTCC--GTGT----CCGCGT-AGATCC---GT-ATCCG-G-----AA-----CG-C------C----CATATA---TCCGTG-A-AAA-----TATC--GT--A--GTCTTTCTTTTGT----GT-TTNGGTTTCGAAAGGCANACATGTTCCTTGAAACAAAACTAGAACAA----TT--TAATAT------GTATCTAACCATGGCAGCTTTGGTGATCCGAGGACGGAAAAANA--TAAAACGNAAACACCGCTGGTGGATACGTTCAGTAATTAAAAATCGC-CTACAATATGGTACATAC------TACCATTTAGTTAA-GGAGCTGGAACTCTGTNATGAA-GAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGNTTTC-----------TTGTGATTGC---AGC-T-T-----TTTN--AAGGCATGTTTCTCGTCAACGTGTCGTCCGTGACTG----GTCCGTGTGCGTGAAAAATCGCTCACTG-CG-CGATTCGT-CACG-AACA-----CGGAT-------------------CACG-------G-----------------------ACGAATGGA----ATGCTCCAACGTA-TTTCCTNTATGAGCG--ATTT-TCAC--GGACGC-----GGAC--ACG--G-----N--ACA-G-CT--G-CG-GACACGGATCACGCATCACGGACAAACGGAATAGCGGCC
gi|1 : TAATCCATTCGTCCGGGATGCGTGGTCCCTGCCCGTGCTCCGCACCCGTGTCC--GTGT----CCGCGT-----CC---GTGATGCGTG-----AA------G-CTATATTC----CATATC---TCCGTA-T-AAA-----TATCT-GTGAA--ATCTTGCTTTTTT----GT-T-------CGAAATGCATACATGTTCGCCGAAACAAAACTATAACTACATGTTCGTAATAT------GTATGTAACCATGGCAACTGTGATGATCCGAGGACGGAAAAAGA--CAGAAAGGAAACATCACTGGTGGATCCGTTGAATAA-TAAAAATCGC-TTACTTTA----AAGTAC------TGTCAT----TTCA-GGAGCTGGAATTCTATTATGAA-GAATTC-GT----------------------GTTTCTGTCAC--T---------------AC-------------ATTAATTCAAGTTTTAAACCGATTTTT-----------TTGTGATTGC---AAC-T-TA----TTTG--AAAGCA----------------------CGTGACTC----GTACGTACGCGTGAAATATCACTCACTG-TG-TACTTCAT-CATA-AACG-----CGGAT--------------------ACG-------GGCGCGTTTCATGCATCACACATCACGGACGAATGAAATGTTCCATTGTA-TTTTTTATTTGAGCA--ATTT-TCAC--GCACGC-----GGAC--AAG--GA----C--ACA-T-CTC-A-CA-GACACGGATCACGCATCACGAACAAATGGAATAG
gi|10 : ttaagctgg-------------A------------------CATATGTC-----------TTGTGATTGCTCCGG----T-----TGTG--TATGCTTGTTTCTCGCCAAATTGGCGTCCGTGACTG----GTCCGAGTGCGTGAAAAATTGCTCACCG-CG-CAATTCGT-CAAA-AACA-----CGGATACGGACCTGGATAACGGATCACG-------G-----------------------ACAAATTGA----ATGCTCCAATGT--CTTCCTTCATGAACG--ATTT-TCAC--AGA
gi|11 : tcgAT-------------------CA-A-------G-----------------------CCGAATGGA----ATGCTCCAACATA-TTTTCTTTATGAGAG--ATTT-TCACGAGAACGCGTCATGGACGGACGACG-----C--ATA-G-CG--GACGAAACACGCATCACGTATCACGGACGAACAGA
gi|12 : TGATGCCTG-------------------------GTTTAAGTGT----CTGTG----ATCCAATGT--TCCA------------------------C----CATATA---TCTGT-----AA-----T------------GTCTTTCTTT--------T-TTACATTTCGAAAGGCATACAAGTTACTTG------AACTACAAAAA----TT--TAATAT------GT
gi|13 : ----CATATA---TCTGT-----AA-----T------------GTCTTTCTT---------T-TTTGGTTTCGAAAGGCATACAAATTACTTG------AACTACAAAAA----TT--TAATAT------GTct
gi|14 : ttgtttaagtgtctgtgatccaatgttccatCCGCTATACCATTCGCCCGTGATGCGTG-------------------------ACCC--GTGT----CC---T-AGGTCC---GT-ATGCGTG-----AA-----CG-C------T----CATATA--------G-A-AAA-----CAC----------ATTTTTGTTCT-T----GT-TTct
gi|15 : gggttaggTTT---------T---------------AC-------------A------------------TA--TTTC-----------TTGTAATTGC---AGC-T-TTCAAGTTTG--AAGGCAAATTT-TCGTCTACGT
gi|16 : ccaaattaataagttttCTTGAAATAAAACTAGATCGA----GT--TAATAT------GTATCTAACCCTGGCAGTTGTGGTAAACCTAGG-TAGAAAA
gi|17 : AAATCGC-CTACAGTATAGCTCATAG------TACAGTTTAGTTAA-AGGGCTGGTACTCTGTGATGAA-GAATTC
gi|18 : tCCGCTATACCATTCGTCCGTGATGCGT
gi|2 : ttagtgaatcatgCCACTTTTCCATTCATCCCTGATGCGTG-------------------------GTCT--GTGT----CCATGTTATTTCA---GTGATCTGTG-----AAG----CA-C------TTTTACATATA---TCTGTG-A-AAAC----TATCTGGT--AC-ATCTTTCTTTTGT----GT-TTCGGTTTGGAAAGGCAAATATGTTCCTTGAA-CAAAACTAGAATAA----TT--TAATAT------GTATCAAACTATGTAATCTTTGGTGATTCAAGGATGGAAAAAGA--CAAAATATAAACATCACTGATGGATACATTCA-TGATTAAAAATTGC-CTACAGTATGTTACATACCATTACTACCATTTAGTTAA-GGAGCTGGAACTCTGTTGTAAAAGAATTCAGG----------------------GTTT---------T---------------AC-------------A------------------CAGGTTTC-----------TTGTGATTGC---AGC-T-T-----TTTC--AAGACATGTTTCTCTCCACCATGTCTTCTGTGAATG----GACCGTGTGTGTGAAAAATCACTCACTA-GG-CGATTTGT-CA-G-----------GGAT-------------------CACA-------G-----------------------GTGAATGGA----ATGCTGCAATGTA-TTTCCTGTACAAGCA--ATTT-TCAC--AGACGT-----AAAC--A----------A--A--------------GACA---A----GCATTATGGATAAATGGAATAGCAGCC
gi|3 : T-ATCCA-GGAAAAAA-----AA-C------C----CATATCGGTTCCGTG-A-A-------------GT------TTTTTCATTTGT----GTGTTATACTTTGGAAATTGTT--TGTTCCTTGAAAAAAACCCAGG--------TT--T--TAT------GTATCTA-------------TGATGATTTG----------------TAAAATACAAACACAGTTCGTGAATATGCTCAGTAATTAAAAAAAAAACTACAAAATTGTACATAC------AAACATTTAGTTAA-GGAGCTTGAACCCTGTTAAGAA-AAAtca
gi|3 : ttccataTTT---------T---------------A--------------A------------------CAGATT-C-----------TTGCCAATGT---AGC-T-T-----TTTTTAAAGCCATGTTTCTGGTCAACGTGTCATCCGTGACTG----GTCCGTTTTCGTGAAAAACAGCTCACGGACGTTGATACGGACACG-GGCA-----CGGAT-------------------CAAA-------G-----------------------AAGAATAGA----ATGTGCCAAAGTATTTTTCTAGATGAGCG--ATTT-TCAT--GAACGC-----GGAT--ACG--AAAACTA--ACACG-CTTCA-CG-GACACGGATCCTGGATCAGGGACAAATGGAATAGCGaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtttttaacagattcttgccaatgtagctttttttaaagccatgtttctggtcaacgtgtcatccgtgactggtccgttttcgtgaaaaacagctcacggacgttgatacggacacgggcacggatcaaagaagaatagaatgtgccaaagtatttttctagatgagcgattttcatgaacgcggatacgaaaactaacacgcttcacggacacggatcctggatcagggacaaatggaatagcgtctttatag
gi|4 : ttccatatatccaggaaaaaaaacccatatcggttccgtgaagttttttcatttgtgtgttatactttggaaattgtttgttccttgaaaaaaacccaggttttatgtatctatgatgatttgtaaaatacaaacacagttcgtgaatatgctcagtaattaaaaaaaaaactacaaaattgtacatacaaacatttagttaaggagcttgaaccctgttaagaaaaaaatcagaatatatttttaaactgagtacttagcaaggtcctcacctaatcaatacgtCCGCTTTTCCATTCGGCCTCGATGCGTT-------------------------GTTC--GTGC----CCGCGT-A---CG---GG-ATCCG-G-----AAAACTTTGTC------C----CTTATA---TCCATGGA-AAA-----TATCC-GT--GAGGTTTTTCTTTTGT----GC-TT---TTT------GCAAACATGTTCCTTAAAACCAAACAAGTACAA----TT--TAACAT------GTGTCGAACTATGGCAGTTTTGGTGATCCGAGGAC---------------ACGTAAACACCGCTGGTGGATACATTCAGTAAGTAAACATTGC-CTACAATATGGTACATAC------TACCATTAAGTTAA-ACAACTGGAACCCTGCAATGAT-GAATTC--G----------------------ATTT---------TTTCCTATCCAAATCAAT-------------AAGTTTGTCA---------CAGCTTTC-----------TTGTGACTGC---AGC-TCT-----TTTT--CAGTCAGGTTTCTCGTCAACGTGTCGTTCTTGACTGGTCCGTCCGTGTGTGTGAAAAGTCGCTTACTT-TG-CTATTCGT-CACGTAAAAGGATCCGAAT-------------------CGCA-------G-----------------------ACGAATAGA----Atctttatag
gi|5 : taaaatatatgCCGCTATTCCATTCGTCGGTGGTG------------------------------TTC--GTGT----CCGCGT-----CC---GT-GCCCG--------------CG----------------------TCCGTG-ATCAC-----TATT--CC--A---TCATTCT----------------------AAAGGCAAACGTGTTTCATGAAATAATTCTAAAACAA----TT--TTATGT------GTATCTTACATTAGCAGTTTTAG--A-CTAAGGAAGAAAAAATA--TAAACC---AACAC---TGATCGATGCGTTCAGTTATTCAGAATCGC-ATACAATATGGTATATAC------TATCATTTAGTAAA-GCAGCTTTTCCCCT-T---------ACTCAG-------------------------TT---------T---------------AT--------------------------------CAGCTTTTTG---------TTGTGACTGC---AGC-T-T-----TTTA--AAGTTCTGTTTATCGTCAACGTGTCGTTCGTAAC-----------------TGAATATTCGCTCACTA-CG-CGA-GCGT-CACG-GACA-----CGGATATTGACGCCGA--------CACGGATCACTG-----------------------ACAAATGGA----ATGCTCCAACGTA-CTTCCAGTATGAGCGTTATTT-T-AT--TGGCGC-----GAAC--ACG--G-----A--TCA---------CG-GACgagcgtcttttgacattgtctgaacgttac
gi|6 : tacttaagATATA---TCCGTG-A-AAAAACATTAGT--GA--A--GTCTTTCTTTTGT----GT-TTTGGTTTTGAAAATTATAAAAGTTCCTTGGAACAAAACTAGAACAA----TT--CTATATGTACCGGTATCTGAACAGGGCAGCTTT--------GAGGATAGAAAAAAAACTAAGACGTTAACACCACTGGTGAATACTTTCGGTAATTAAAAATCGC-CTACAATATGGTATATA----------CATTCA-TTAAGGGAGCTGGAACTCTGTGATTAG-CAATTCAGGTTTTCCCTCACCAGATTGATATGTTT---------T----------------T-------------A------------------CAGATTTC-----------TTTTGATTGC---AGC-T-T-----TTTgaacataata
gi|7 : AACACCGCTGGTGGATACGTTCAGTAATAAAGGTTTGC-CTTCAATATCGTATTTGC------TACCGTTTAGTAAA-GGAGCTGGAACTTTGTGATGAA-GAATTTAGA----------------------ATTTGGCTCATTAT---------------ATTA-----------A------------------CACGTTTA-----------TTGTGTTTGC---AAC-T-T-----TTTTTGAAGGCATGTTACTCGTCAACATGTTTTCCGTGATTG----GCCCGTGTGCGTGAAAAATCGCTTATTG-TG-CGATTCAT-CACG-AACA-----TGGAT--------------------ACG-------G-----------------------At
gi|7 : TGTGCG--ATTCATCAC--GAACAT-----GGAT--ACG--G-----ATCACA-AACT----TG-GCCATAGACCACGCATCACGGACAAACGtcacaaacttggccatagaccacgcatcacggacaaacg
gi|8 : aacaccgctggtggatacgttcagtaataaaggtttgccttcaatatcgtatttgctaccgtttagtaaaggagctggaactttgtgatgaagaatttagaatttggctcattatattaacacgtttattgtgtttgcaactttttttgaaggcatgttactcgtcaacatgttttccgtgattggcccgtgtgcgtgaaaaatcgcttatCCGCTATTCCATTCATCCGTGATGTGT---------------------------TCC--GTGAAGCACAATAT-AGAT-----AT-AT----------AA-----CA-T------A----CATATA---TCCGTG-A-A--------------------GTCTTTCTTTTGTATTTGT-TTGGGTTCCGAAAGGCAAACACGATCCTTGAAATAAAACTAGAATAA----TT--TAATAT------GCATTTAACCATGGTAGCTGTGATGATCCCAGGAAGGAAAAATA--TGAAACTAAAACATTGCT-GCCGATGCGTTC
gi|9 : ggCCGGTGGATATCTTCAGTAATTAAATATCGT-TTGCATTACAGTACAAAT------TA-AATTAACTTAA-GGAGCTGGGACTCTGTAAT--A-AAATTC-GG----------------------GTTT---------T---------------CCCTCAAATAATTCAA------------------AAGTTTTCCTAATATGTCTTTATG-TTTC---AGCTT-T-----TTTG--AAGGCACGTTTCT-GACCACGTGTCGTCCGTGGCTG----ATCCGTGTG