lowQualScore : 111111111111111111111111111111111111 222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 11 1 2222 1 111 444444444444444444444444444444444444 11111 55555555555555555555555 11 222222222222222222222222222222222222222222222 1 1 2222 1 22222 111 1 1 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555 11 22222 111 88888888888888888888888 1111 2222222222222 44444444444444444444 11 1 66666666666666 1111 333333 222222222222 1 3333333333333333333 1 22 5555555555 1 1111
lowQualScore : 4 666 88 2 6666 77 7 111 111111111111111111111111111111111111 2 3 88888 2 88888888888888888888888 0 33 3 2 0 888888888888888888888888888888888888888888888 1 2 3333 7 6 3 1 0 77777 000 33 1 1 8 4 0 0 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999 0 2 1 33 3 44444 444 5 0 1 9999 22222222222222222222222 0 6666 1 5 2 7777777777777 777 11111111111111111111 88 1 5 1 11111111111111 6666 444444 5 666666666666 0 5555555555555555555 2 44 0 33 3 8888888888 0 8888
lowQualScore : . ... .. . .... .. . ... .................................... . . ..... . ....................... . .. . . . ............................................. . . .... . . . . . ..... ... .. . . . . . . . ............................................................................... . . . .. . ..... ... . . . .... ....................... . .... . . . ............. ... .................... .. . . . .............. .... ...... . ............ . ................... . .. . .. . .......... . ....
lowQualScore : 0 777 33 3 0000 77 0 777 222222222222222222222222222222222222 5 2 00000 5 22222222222222222222222 2 88 2 5 8 000000000000000000000000000000000000000000000 8 8 0000 0 0 7 2 8 22222 000 44 7 4 7 6 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777 2 5 4 22 0 44444 000 6 6 4 4444 33333333333333333333333 4 0000 5 9 7 3333333333333 888 88888888888888888888 00 4 1 4 00000000000000 2222 444444 0 666666666666 0 8888888888888888888 2 22 0 00 2 8888888888 0 0000
consensus : ATCGATTGT--TTCC--GATTTCATGGCCGAAAAAAA-AT-AGGGTAGGTAGGTCGNGATAT-TATTTA------TATTTT------T-----AAACCTGATGTTATGTTGTGTCACTGTTTCGTCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACGACACT--CTGCTTGTCATTTCTGTAC-----A-T-ATG------CT-------A-AT-TA-A---------ATGTCCAATGTCAGAATCTGATAGAGATAAATCAACGTCAATTCCNTTCTCTTCGAAACTTTTTG--A-CGAC---CTGGTGACTTTAAGGGAATATTTTNCTGTATTTTGCGATCTATCTTGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGANNNN----TGACATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGNCGC---CATATTGGCGAGAGGTAGTGAGCG----CTT-TA---TA------ATGCTTTATACCTT---ATGAGCGTCTCNATGATGT-T-GAT--GAATGAGCGGAAAG---GCAT----G---GA--------AAGAAAGCAAAGAGGAA-AATTAAAAAAA------ATN----NTTCTCG--CAAAATCGGTTA-AAAAAGA-TTAGGGTCGGGGCTAAAAA-----ATAGAG-----TC-GTCGGGAA-ACCAGAAACAAACANT------TTT-TTGTTANACCTAA
Reference ( gi|1 ) : ATTAATTGT--ATCT--GATTTCATGGCTAAAAAAAA-AA-AAGGTAGGTTGGTAAGGATATTTATTTATTTGTTTATTTT------T-----AATCCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAACAACAACACT--CTGCTTGTCATTTCTGTAC-----ATTCATA------CTA------AAACGTA-AC--------ATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTTTG--A-AGAC---CTGGTGACTTTAAGGGAATATTTTTCTATATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGACATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACAC---CATATTGGCGAGAGGTAGTGAGCA----CTT-AA---TA------AT-----AAATCTA---ATAAGCATCTCTATGATAT-T-GAT--CAATTAGCGGAAAG---ACAT----T---GA--------CAGAACACAAAGAGGAA-AATTAAAAAAA------AAA----ATTCTCA--CAAAATCAGACA-AAAAAGA-TAAAGGTTTGTGCTCAAAA-----ATACAG-----TCTGTTAGAGA-ACCTAAAACAAACCCC------TTT-TTGTAATGCCTAAGG
gi|6 : ATAAATTGTTTATCTCCAATTTCATGGCTGAAAAAAA-ATTAGGGTAAGTAGGTCGAAATATATATATAATTTTATATTTT------TTTTTAAAACCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAAAAC-ACAGTTCCTGCTTGTCACTTCTGTACAGTATATTCATG------CT-------ACATGTA-ATATTTAGAAATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTC
gi|3 : tgaatcaggtctcaaggccttaaaaatATTGTTTGT--TTCC--GATTTCATGGCCAAAACAAATAA-AA--TAGGTAGATAGTGAT-TTT-TTTA-------A----------------AAACCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAATGC-ATACT--C-ATTTGTCATTTCGGTAC-----A
gi|2 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaAATTGT--TTCT--GATTTCATGGCT-AGAAAAA-AT-AGGGTAGATAGGTCAGGATA--TATTT-T-------TTTT------T-----AA-CATGATGTTATGTTGTGTCAC----------TGTATTTTTAACAAGTTTTGTACGCAA------AATAACACT--CTGCTTGT------TGTCC-----A---------------------------------------ATGT-------CAGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTATG--A-CGAC---CTGATGACTTTAAGGGAATATTTTCCTGTAGTTTGTGATCTATCTgtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|8 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaTATTTTAAAAAAT-----AA-CCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATG--TT--------------AACG-CATT--CTGCTTGTCATTTCTGTAC-----AGT-ATATGTGTGCTACATTCGAAATTTAGAA--------ATGTCCAATGTTAGATTCTAAT--AGATCTATCGATGTCAATTCTATTCTcgatggttcaatattgctccacttcctcatttgtttatattgtgttgcaatgaatgacatgctagtttggtcattatttgctcctagcagcaattattgacactgccatgtgggtgagaggtagtgagcactgatatctatttatctgtaccactatggcattgatgaatgagtggatatacatagaatgaagaaggaacacaaagaggaaatttaaaaaaaaatctgtaaaattggtaaagaatattagggtcgggctaaaaaaacggatacaaacttttctgttattcccagtatatttga
gi|2 : atggccgacaaaatagggaaggtaggtctggaTGTCCAATGTCAGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTATG--A-CGAC---CTGATGACTTTAAGGGAA----------TATTTTCC--TGTAGTTTGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA-------ATGACATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGC---CATGTGGGTGAGAGGTAGTGAGCA----C-T-GA---T----------------ATCTATTTATCTGTACCACTATGGCAT-T-GAT--GAATGAGTGGATAT---ACATAGAATGAAGA--------AGGAACACAAAGAGGAA-ATTTAAAAAAA------AA-------TCT-G--TAAAATT-GGTA-AAGAATA-TTAGGG-TCGGGCTAAAAAAACGGATACAAACTTTTCTGTTA
gi|11 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaattgtttctgatttcatggctagaaaaaatagggtagataggtcaggatatatttttttttaacatgatgttatgttgtgtcactgtatttttaacaagttttgtacgcaaaataacactctgcttgtTCTAATATATGAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTCAAA-CTTCTTG--TTAGATAAACTGGTGACTTTAGGGGAAAATTCTttcccagtatatttga
gi|18 : ttgtaaaaaagatataataattatgcttgtcattcTGTCAATTTCCGTCTCACCAAAACTTTTTGTGG-CGAG---CCGTTGACTTTAACAGAATATTTTCCcaagctgtgg
gi|19 : aTCAAAACTCTTTG--G-CAAC---TTAGTGACTTTAAGAGAATA-TTTTCT-TATTCTACGATCTATCTgtaactttgtg
gi|3 : TTTG--A-CGAC---CAGGTGACTTTAAAAGAATATTTAACTGTATTTTGCGAGATAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG---AACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACAC---CATATTGGCGAAAAGTAGTGAGCA----TTT-TA---TA------cgattatttagt
gi|10 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaAC---CTGGAGACTTTAA----ATATTTTACTGTATTTTATGATCTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TG---TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATT---GACAC---CA-------GAGAGGcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : gacaCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGC---CAGATTGGTGAGAGTTAATGAGCA----CTTCAAAGTTACT----AT-----GTATATA---ATAGGCAGCTCTAAAATGT-T-GAT-----TTCACAGAAGGAACACAT----T---GAGGAAAATTCAAAA---AAAGAGGAA-AATT--CAAAA------AAG----ATTCTGA--CAGTATCAGTC--AAAAAGA-GAGAGTCGTGTTCTCAAAA-----ATAGGG-----TTGGTTGGAAA-ACCAGAAACAAA--CA------TTTATTGTTACATCTAA
gi|4 : tatTTTTAATTCTTCATGCCAATTATTTA---CACTGTCATATTGGCGAGAGGTGATGAGCA----CTT-TA---TATTTACTAT-----ATATCAA---ATAAGCATCTCTATGACGT-----------------GAAAG---ACAT----G---GA--------AAGAACACAATGAGGAA-AAT---ATAAA------GTATTTTATTTTTATTCAAAATCGGTCA-AAAAAGAGTA---GTCGGGGCTAAAAA-----AT--AG-----T---TCAGGAA-ACCAGAAAC-AATCAT------TTT-TTGTTAGACCTAAtttataatatttctgtttgcaggtgaag
gi|7 : attggtacctccttgaaattgtttccattatactgaaaaaaactttagTGAGCAAGTGCTT-TA---TA------ATGCTCTATACCTT---ATAAACATCTCCATAATGT-TTGAT--GAATGAACAGAAAA---GCATCAAAT---GA--------AAGAA----AAGAGAAA-AAGTTAAAAAC------ATT----TTTTTCG--CAGAATTGG-TATAAAAAGA-TTAGGGTCGGAGTTAAAAA-----ATAGGG-----TC-GTTTGGGATACCAGAAACAAACAAT------TTT-TTtagatactaaacgtgagagttgttaactcagcaatat
gi|12 : ccattttgagatgttcccaGAGCG----CTT-TA---TA------ATGCTTTAAACCTT---ATGAGCGTCTCAATGATGT-TTGAT--GAATGAGCGGAAAG---GCGT----G---GA--------ATGAAAGCAAAGAtatgcattatacctttttgtaacttgaacgtgacaagatattaatac
gi|16 : ctactattttgagatttccccatgagcacGAGTG----CTT-TA---TA------ATGCTTTATACCTT---GTGAGCGTCTCAATGATGT-TTGAT--GAATGAACGGAAAA---GCAT----G---GA--------CAGAAAGCAAAGAGtatataattaa
gi|15 : ctaccattttgagatttttcccatgagcacGAGCG----CTT-TA---TA------ATGCTTTATACCTT---CTGAGCGCCTCAATGATGTAT-GAT--GAATGAGCGAAAAG---GCAT----G---GA--------ATGAAAGCAAAGAGAAATAATTAAa
gi|13 : tgaaatgatttccccatgaacaaGGGCG----CTT-TA---TA------ATGCTTTATACCTT---ATGAGCGTCTCAATTATGTAT-GAT--GAATGAGCGAAAAG---GCAT----G---GA--------ATGAAAGCAAAGAGAAATAATTAA
gi|9 : ctaacattttgggattttcgcatgagcacTAT-T-GACACCAG--AGAGGAAAG---ACAC----A---GA--------AAGAAAACAAAGAGGAA-AATTAAATTAAGTTTTTATT----TTTCTCA--CAAAATCTG-TA-AATAA-A-TTAGGGTCGGGGTTAAAAA-----ATAGAG-----CCAGCCGGGAA-ACGAGAAACAAACATTTGTATATTT-TTGTTATACCTAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CTACTATTTTGAGATTTTCCCATGAGCACGAGCGCTTTATAATGCTTTAAACCTTATGAGCGTCTCAATGATGTTTGATGAATGAGCGAAAAGTCATGGAATGAAAGCAAAGATATATAATTAA
Unaligned ( gi|17 ): CTCACAAAATAGGATCCGTCGGGAAACCGGAAACAAACACGTATTGTTATCGTCATTTATATATGCTGGCAGCGTAA
Alignments
lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 1 000000000000000000000000000000000000 1 222222 66666666666666666666666666666666666666666666 1111 1111 222222 2222 11 1 1 3333333333 1111 11 2222 3333333333 11111
lowQualScore : 6 4 1 3 0 8 22 111111111111111111111111111111111111 0 4 1 3 0 1 444444 1 99 6 3 2 22222222222222222222222222222222222222222222 3 1 3333 3 1 1 9 2222 77 33 6666 5 3 33 1 111111 0000 33 3 1 44 1 7777 1 1 2 8 4 666 666 666 2 666 7777 0 5 6666666666 5555 44 6 1 99 1 55 8888 0 1111111111 22222 1
lowQualScore : . . . . . . .. .................................... . . . . . . ...... . .. . . . ............................................ . . .... . . . . .... .. .. .... . . .. . ...... .... .. . . .. . .... . . . . . ... ... ... . ... .... . . .......... .... .. . . .. . .. .... . .......... ..... .
lowQualScore : 0 0 2 2 8 0 44 888888888888888888888888888888888888 8 6 4 8 8 4 555555 0 22 7 2 5 88888888888888888888888888888888888888888888 2 4 4444 3 0 2 6 1111 99 44 6666 7 7 88 0 444444 8888 22 2 0 77 0 6666 6 0 0 0 0 444 444 444 8 444 7777 0 0 8888888888 0000 55 7 0 22 0 11 7777 4 0000000000 55555 0
consensus : ATTGNTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACGACACT--C-TGCTTGTCATTTCTGTACAG------T--ATGCTAC-------A---TT----------AA-ATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCT----CGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGACATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGA---ANG---AAAG----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Reference ( family-2962 ) : ATCGATTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGNGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCGTCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACGACACT--C-TGCTTGTCATTTCTGTACA-------T--ATGCTA--------A---TT----------AA-ATGTCCAATGTCAGAATCTGATAGAGATAAATCAACGTCAATTCCNTTCTCTTCGAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCT----TGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGANNNNTGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGNCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGA---AAG---AAAG----CAAAGAGGAA-AAT-TAAAAAAA------ATNNTTCTCG--CAAAATCGGTTAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGAGTC-G-TCGGGAAACCAGAAACAAAC-ANT------TTTTT-----GTTANACCTAA
gi|1 : ATTAATTGTATCTGATTTCATGGCTAAAAAAAAAA-AAGGTAGGTTGGTAAGGATAT-----TTA--TTTATTTGTTTA---TTTTT-----AATCCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAACAACAACACT--C-TGCTTGTCATTTCTGTACA-------TTCATACTA--------AAACGT----------AACATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTTT----G--AAGACCTGGTGACTTTAAGGGAATATTTT---TCTAT-ATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGA-CATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACACCATATTGGCGAGAGGTAGTGAGCACTTAATA-A-------TAAATCTAATAAGCATCTCTATGATA-T-T-GATCAATTAGCGGAAAG---ACAT---TGA---CAG---AACA----CAAAGAGGAA-AAT-TAAAAAAA------AAAATTCTCA--CAAAATCAGACAAAAA-AGATAAAGGTTT-GTGCTCAAAAATACAGTCTG-TTAGAGAACCTAAAACAAAC-CCC------TTTTT-----GTAATGCCTAA
gi|10 : ----G--ACAACCTGGAGACTTTAA----ATATTTT---ACTGT-ATTTTATGATCTATCT----TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG----TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATTGACACCgg
gi|11 : GTAAAAAAGATATAATAAT--TATGCTTGTCATT-CT------------------CTA--------A---T---------------------ATAT--GAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTC-AAACTTCTTGTTAG--ATAAACTGGTGACTTTAGGGGAAAATTCTCAAGCTGT-agagagg
gi|12 : ttGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGGAAAG---GCGT---GGA---ATG---AAAG----CAAAGAgg
gi|13 : ctactattttgagatttccccatgagcacGGGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCAATTATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGA---ATG---AAAG----CAAAGAGAAATAAT-TAAtatataattaa
gi|14 : ctaacattttgggattttcgcatgagcacGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGAAAAG---TCAT---GGA---ATG---AAAG----CAAAGA
gi|15 : ctactattttgagattttcccatgagcacGAGCGCTTTATA-A--TGCTTTATACCTTCTGAGCGCCTCAATGATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGA---ATG---AAAG----CAAAGAGAAATAAT-TAAtatataattaa
gi|16 : tgaaatgatttccccatgaacaaGAGTGCTTTATA-A--TGCTTTATACCTTGTGAGCGTCTCAATGATGTT-T-GATGAATGAACGGAAAA---GCAT---GGA---CAG---AAAG----CAAAGAG
gi|17 : ctaccattttgagatttttcccatgagcacAAAATAGGATCCG-TCGGGAAACCGGAAACAAAC-AC-------GTATT-----GTTAa
gi|18 : ctcacATGTCAATTTCCGTCTCACCAAAACTTTTT----GTGGCGAGCCGTTGACTTTAACAGAATATTTT---CC-GTAACTTTGTGtcgtcatttatatatgctggcagcgtaa
gi|19 : TCAAAACTCTTT----G--GCAACTTAGTGACTTTAAGAGAATATTTT----CT-T-ATTCTACGATCTATCT----CG
gi|2 : ATTGTTTCTGATTTCATGGCT-AGAAAAAAT-AGGGTAGATAGGTCAGGATAT-------A--TTT------------TTTTT-----TAACATGATGTTATGTTGTGTCACTGT----------ATTTTTAACAAGTTTTGTACGCAAAATAA------CACT--C-TGCTTGT--------------------------------------------------------TGTCCAATGTCAGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTAT----G--ACGACCTGATGACTTTAAGGGAATATTTT---CCTGT-AGTTTG----------------TGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA---ATGA-CATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGCCATGTGGGTGAGAGGTAGTGAGCAC-TGATA-------TCTAT---TTATCTGTACCACTATGGCA-T-T-GATGAATGAGTGGATAT---ACAT---AGAATGAAG---AAGGAACACAAAGAGGAA-ATT-TAAAAAAA------A---ATCT-G--TAAAATTGG-TAAAGA-ATATTAGGGTC--GGGCTAAAAAA-A-----------------CGGATACAAAC---T------TTTCT-----GTTATTCCCAattatttagt
gi|3 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaGAAATCGGAAACAAACAATT------TTTTT-----TTTAAGCCTAAgtatatttga
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttaATTGTTTGTTTCCGATTTCATGGCC-AAAACAAAT-AAAATAGGTAGATAGTGATTT-----T----TTTA-------A-------------AAACCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAATGC-ATACT--C--ATTTGTCATTTCGGTACAG------T--ATatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaTTT----G--ACGACCAGGTGACTTTAAAAGAATATTTA---ACTGT-ATTTTGCGAGATAACT----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACACCATATTGGCGAAAAGTAGTGAGCATTTTATA-attcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|4 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaTTAGTTTTAATTCTTCATGCCAATTATTTACACTGTCATATTGGCGAGAGGTGATGAGCACTTTATATT--TACTATATATCAAATAAGCATCTCTATGACG-T---------------GAAAG---ACAT---GGA---AAG---AACA----CAATGAGGAA-AATATAAAGTAT------TTTATTTTTATTCAAAATCGGTCAAAAA-AGAGTA--GTCG-GGGCTAAAAAAT--AGT----TCAGGAAACCAGAAACAATC-A-T------TTTTT-----GTTAGACCTAAcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : attggtacctccttgaaattgtttccattatactgaaaaaaactCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGCCAGATTGGTGAGAGTTAATGAGCACTTCA-A-AGTTACTATGTATATAATAGGCAGCTCTAAAATG-T-T-GAT---TTCACAGAAGGAACACATTGAGGA---AAATTCAAAA-----AAAGAGGAA-AAT-TCAAAAAA--------GATTCTGA--CAGTATCAGTCAAAAAGAG---AGAGTCGTGTTCTCAAAAATAGGGTTGG-TTGGAAAACCAGAAACAAAC-A-T------TTATT-----GTTACATCTAAtagatactaaacgtgagagttgttaactcagcaatat
gi|6 : tatATTGTTTATCTCCAATTTCATGGCTGAAAAAAAATTAGGGTAAGTAGGTCGAAATATATATAT-AATTTTAT------A---TTTTTTTTTAAAACCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAAAAC-ACAGTTCC-TGCTTGTCACTTCTGTACAGTATATTC--ATGCTACATGTAATA---TTTAG-------AA-ATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTCtttataatatttctgtttgcaggtgaag
gi|7 : tgaatcaggtctcaaggccttaaaaatataaAGCAAGTGCTTTATA-A--TGCTCTATACCTTATAAACATCTCCATAATG-T-TTGATGAATGAACAGAAAA---GCAT---CAA---ATG---AAAG----AAAAGAGAAA-AAG-TTAAAAAC------ATTTTTTTCG--CAGAATTGGTATAAAA-AGATTAGGGTCG-GAGTTAAAAAATAGGGTC-GTTTGGGATACCAGAAACAAAC-AAT------TTTTTTATGCATTATACCT
gi|8 : ccattttgagatgttcccatgATGGCCGACAAAA--T-AGGGAAGGTAGGTCTGGATAT-----T-----TTAA------AAAAT----------AACCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATGTT----------------AACG-CATT--C-TGCTTGTCATTTCTGTACAGTATATGT--GTGCTAC-------A---TTCGAAATTTAGAA-ATGTCCAATGTTAGATTCTAATAGATCT--ATCGATGTCAATTCTATTCTttttgtaacttgaacgtgacaagatattaatac
gi|9 : GAGAGGAAAG---ACAC---AGA---AAG---AAAA----CAAAGAGGAA-AAT-TAAATTAAGTTTTTATTTTTCTCA--CAAAATCTGT--AAAT-AAATTAGGGTCG-GGGTTAAAAAATAGAGCCAG-CCGGGAAACGAGAAACAAAC-ATTTGTATATTTTT-----GTTATACCTAA
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1 000000000000000000000000000000000000 1 222222 11 444444444444444444444444444444444444 1111111 1111 3333333 11 1 1 333333333 1111 1 33333333 22222222 11111
lowQualScore : 1 1 3 0 8 1 111111111111111111111111111111111111 0 1 3 0 1 1 999999 11 0 0 0 444444444444444444444444444444444444 3 1 3333 1 3 2222222 33 6666 5 3 33 1 44 3333333 33 3 1 44 7777 0 1 1 2 8 4 666 666 1 666 55 99999 0 5 222222222 5555 0 6 1 99 1 00000000 0 1 0 5 33333333 22222
lowQualScore : . . . . . . .................................... . . . . . . ...... .. . . . .................................... . . .... . . ....... .. .... . . .. . .. ....... .. . . .. .... . . . . . . ... ... . ... .. ..... . . ......... .... . . . .. . ........ . . . . ........ .....
lowQualScore : 0 2 2 8 0 4 888888888888888888888888888888888888 8 4 8 8 4 0 000000 00 8 8 8 888888888888888888888888888888888888 0 4 4444 2 8 3333333 44 6666 7 7 88 0 22 2222222 22 2 0 77 6666 7 6 0 0 0 0 444 444 0 444 00 11111 0 0 000000000 0000 8 7 0 22 0 77777777 4 1 4 0 00000000 55555
consensus : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAAC-ACACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTA---CGT-T-G-A-TT-G-AAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTT--T----GACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Reference ( family-2962 ) : ATTGNTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACGACACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTA---CAT-T----------AAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTT--T----GACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
gi|1 : ATTAATTGTATCTGATTTCATGGCTAAAAAAAAAA-AAGGTAGGTTGGTAAGGATAT-----TTA--TTTATTTGTTTA---TTTTT-----AATCCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAACAACAACACT--CTGCTTGTCATTTCTGTACATTC-----A------TACTAAAACGT-A----------ACATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTT--T----GAAGACCTGGTGACTTTAAGGGAATATTTT---TCTAT-ATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGA-CATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACACCATATTGGCGAGAGGTAGTGAGCACTTAATA-A--T-----AAATCTAATAAGCATCTCTATGATA-T-T-GATCAATTAGCGGAAAG---ACAT---TGACAG---A--ACA-----CAAAGAGGAA-AAT-TAAAAAAA------AAAATTCTCA--CAAAATCAGACAAAAA-AGATAAAGGTTT-GTGCTCAAAAATACAGTCTG-TTAGAGAACCTAAAACAAAC-CCC------TTTTT-----GTAATGCCTAA
gi|10 : ----GACAACCTGGAGACTTTAA----ATATTTT---ACTGT-ATTTTATGATCTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNTG----TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATTGACACCgg
gi|11 : TCTAATATATGAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTC-AAACTTCT--TGTTAGATAAACTGGTGACTTTAGGGGAAAATTCTCAAGCTGT-agagagg
gi|12 : ttgtaaaaaagatataataattatgcttgtcattcGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGGAAAG---GCGT---GGAATG---A--AAG-----CAAAGAgg
gi|13 : ctactattttgagatttccccatgagcacGGGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCAATTATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|14 : ctaacattttgggattttcgcatgagcacGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGAAAAG---TCAT---GGAATG---A--AAG-----CAAAGA
gi|15 : ctactattttgagattttcccatgagcacGAGCGCTTTATA-A--TGCTTTATACCTTCTGAGCGCCTCAATGATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|16 : tgaaatgatttccccatgaacaaGAGTGCTTTATA-A--TGCTTTATACCTTGTGAGCGTCTCAATGATGTT-T-GATGAATGAACGGAAAA---GCAT---GGACAG---A--AAG-----CAAAGAG
gi|17 : ctaccattttgagatttttcccatgagcacAAAATAGGATCCG-TCGGGAAACCGGAAACAAAC-AC-------GTATT-----GTTATa
gi|18 : ctcacATGTCAATTTCCGTCTCACCAAAACTTTTTGT----GGCGAGCCGTTGACTTTAACAGAATATTTT---CC-GTAACTTTGTGcgtcatttatatatgctggcagcgtaa
gi|19 : TCAAAACTCTT--T----GGCAACTTAGTGACTTTAAGAGAATATTTT----CT-T-ATTCTACGATCTATCTCG
gi|2 : TTGTTTCTGATTTCATGGCT-AGAAAAAAT-AGGGTAGATAGGTCAGGATAT-------A--TTT------------TTTTT-----TAACATGATGTTATGTTGTGTCACTGT----------ATTTTTAACAAGTTTTGTACGCAAAATAA------CACT--CTGCT---------TGT--------------------------------------------TGTCCAATGTCAGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTA--T----GACGACCTGATGACTTTAAGGGAATATTTT---CCTGT-AGTTTG------------TGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA-------ATGA-CATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGCCATGTGGGTGAGAGGTAGTGAGCAC-TGATA-------TCTAT---TTATCTGTACCACTATGGCA-T-T-GATGAATGAGTGGATAT---ACAT---AGAATG---AAGAAGGAACACAAAGAGGAA-ATT-TAAAAAAA------A--A-TCT-G--TAAAATTGGT-AAAGA-ATATTAGGGTC--GGGCTAAAAAA-A-----------------CGGATACAA---ACT------TTTCT-----GTTATTCCCAattatttagt
gi|3 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaaGAAATCGGAAACAAACAATT------TTTTT-----TTTAAGCCTAAgtatatttga
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttaATTGTTTGTTTCCGATTTCATGGCC-AAAACAAAT-AAAATAGGTAGATAGTGATTT-----T----TTTA-------A-------------AAACCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAATGC-ATACT--C-ATTTGTCATTTCGGTACAGT------A------Tatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaTT--T----GACGACCAGGTGACTTTAAAAGAATATTTA---ACTGT-ATTTTGCGAGATAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNCGAACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACACCATATTGGCGAAAAGTAGTGAGCATTTTATA-attcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|4 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaTTAGTTTTAATTCTTCATGCCAATTATTTACACTGTCATATTGGCGAGAGGTGATGAGCACTTTATATT--TACTATATATCAAATAAGCATCTCTATGACG-T---------------GAAAG---ACAT---GGAAAG---A--ACA-----CAATGAGGAA-AATATAAAGTAT------TTTATTTTTATTCAAAATCGGTCAAAAA-AGAGTA--GTCG-GGGCTAAAAAATA--GT----TCAGGAAACCAGAAACAATC-A-T------TTTTT-----GTTAGACCTAAcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : attggtacctccttgaaattgtttccattatactgaaaaaaactCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGCCAGATTGGTGAGAGTTAATGAGCACTTCA-A-AGTTACTATGTATATAATAGGCAGCTCTAAAATG-T-T-GAT---TTCACAGAAGGAACACATTGAGGAAAATTCA--AAA------AAAGAGGAA-AAT-TCAAAAAA------G--ATTCTGA--CAGTATCAGTCAAAAAGAG---AGAGTCGTGTTCTCAAAAATAGGGTTGG-TTGGAAAACCAGAAACAAAC-A-T------TTATT-----GTTACATCTAAtagatactaaacgtgagagttgttaactcagcaatat
gi|6 : tatATTGTTTATCTCCAATTTCATGGCTGAAAAAAAATTAGGGTAAGTAGGTCGAAATATATATAT-AATTTTAT------A---TTTTTTTTTAAAACCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAAAAC-ACAGTTCCTGCTTGTCACTTCTGTACAGTATATTCA------TGCTA---CATGTAATATTTAG-AAATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTCtttataatatttctgtttgcaggtgaag
gi|7 : tgaatcaggtctcaaggccttaaaaatataaAGCAAGTGCTTTATA-A--TGCTCTATACCTTATAAACATCTCCATAATG-T-TTGATGAATGAACAGAAAA---GCAT---CAAATG---A--AAG-----AAAAGAGAAA-AAG-TTAAAAAC------ATTTTTTTCG--CAGAATTGGTATAAAA-AGATTAGGGTCG-GAGTTAAAAAATAGGGTC-GTTTGGGATACCAGAAACAAAC-AAT------TTTTTTATGCATTATACCT
gi|8 : ccattttgagatgttcccatgATGGCCGACAAAA--T-AGGGAAGGTAGGTCTGGATAT-----T-----TTAA------AAAAT----------AACCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATGTT----------------AACG-CATT--CTGCTTGTCATTTCTGTACAGT------ATATGTGTGCTA---CAT-TCGAAATTTAGAAATGTCCAATGTTAGATTCTAATAGATCT--ATCGATGTCAATTCTATTCTttttgtaacttgaacgtgacaagatattaatac
gi|9 : GAGAGGAAAG---ACAC---AGAAAG---A--AAA-----CAAAGAGGAA-AAT-TAAATTAAGTTTTTATTTTTCTCA--CAAAATCTGT--AAAT-AAATTAGGGTCG-GGGTTAAAAAATAGAGCCAG-CCGGGAAACGAGAAACAAAC-ATTTGTATATTTTT-----GTTATACCTAA
Alignments
lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 1 000000000000000000000000000000000000 1 111 11 55555555555555555555555555555555555555 1 1111 1111 3333333 11 1 1 333333333 1111 1 33333333 22222222 11111
lowQualScore : 1 3 0 8 1 111111111111111111111111111111111111 0 1 3 0 1 1 222 8 11 0 0 00000000000000000000000000000000000000 0 3 3 1 3333 1 3 2222 77 33 6666 5 7 33 1 2 3333333 33 3 1 44 7777 0 1 1 2 8 4 666 666 1 666 55 99999 0 5 222222222 5555 0 6 1 99 1 00000000 0 1 0 5 33333333 22222
lowQualScore : . . . . . .................................... . . . . . . ... . .. . . ...................................... . . . . .... . . .... .. .. .... . . .. . . ....... .. . . .. .... . . . . . . ... ... . ... .. ..... . . ......... .... . . . .. . ........ . . . . ........ .....
lowQualScore : 2 2 8 0 4 888888888888888888888888888888888888 8 4 8 8 4 0 000 0 00 8 8 88888888888888888888888888888888888888 0 2 2 4 4444 2 8 1111 99 44 6666 7 8 88 0 6 2222222 22 2 0 77 6666 7 6 0 0 0 0 444 444 0 444 00 11111 0 0 000000000 0000 8 7 0 22 0 77777777 4 1 4 0 00000000 55555
consensus : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTA---CGT-T---AAT-TT--GAA-ATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Reference ( family-2962 ) : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTA---CGT-T---GAT-T---GAA-ATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
gi|1 : ATTAATTGTATCTGATTTCATGGCTAAAAAAAAAA-AAGGTAGGTTGGTAAGGATAT-----TTA--TTTATTTGTTTA---TTTTT-----AATCCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAACAACAACACT--CTGCTTGTCATTTCTGTACATTC-----A------TACTAAAACGT--------------AACATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTTT----G--AAGACCTGGTGACTTTAAGGGAATATTTT---TCTAT-ATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGA-CATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACACCATATTGGCGAGAGGTAGTGAGCACTTAATA-A--T-----AAATCTAATAAGCATCTCTATGATA-T-T-GATCAATTAGCGGAAAG---ACAT---TGACAG---A--ACA-----CAAAGAGGAA-AAT-TAAAAAAA------AAAATTCTCA--CAAAATCAGACAAAAA-AGATAAAGGTTT-GTGCTCAAAAATACAGTCTG-TTAGAGAACCTAAAACAAAC-CCC------TTTTT-----GTAATGCCTAA
gi|10 : ----G--ACAACCTGGAGACTTTAA----ATATTTT---ACTGT-ATTTTATGATCTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNTG----TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATTGACACCgg
gi|11 : TCTAATATATGAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTC-AAACTTCTTGTTAG--ATAAACTGGTGACTTTAGGGGAAAATTCTCAAGCTGT-agagagg
gi|12 : ttgtaaaaaagatataataattatgcttgtcattcGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGGAAAG---GCGT---GGAATG---A--AAG-----CAAAGAgg
gi|13 : ctactattttgagatttccccatgagcacGGGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCAATTATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|14 : ctaacattttgggattttcgcatgagcacGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGAAAAG---TCAT---GGAATG---A--AAG-----CAAAGA
gi|15 : ctactattttgagattttcccatgagcacGAGCGCTTTATA-A--TGCTTTATACCTTCTGAGCGCCTCAATGATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|16 : tgaaatgatttccccatgaacaaGAGTGCTTTATA-A--TGCTTTATACCTTGTGAGCGTCTCAATGATGTT-T-GATGAATGAACGGAAAA---GCAT---GGACAG---A--AAG-----CAAAGAG
gi|17 : ctaccattttgagatttttcccatgagcacAAAATAGGATCCG-TCGGGAAACCGGAAACAAAC-AC-------GTATT-----GTTATa
gi|18 : ctcacATGTCAATTTCCGTCTCACCAAAACTTTTT----GTGGCGAGCCGTTGACTTTAACAGAATATTTT---CC-GTAACTTTGTGcgtcatttatatatgctggcagcgtaa
gi|19 : TCAAAACTCTTT----G--GCAACTTAGTGACTTTAAGAGAATATTTT----CT-T-ATTCTACGATCTATCTCG
gi|2 : TTGTTTCTGATTTCATGGCT-AGAAAAAAT-AGGGTAGATAGGTCAGGATAT-------A--TTT------------TTTTT-----TAACATGATGTTATGTTGTGTCACTG----------TATTTTTAACAAGTTTTGTACGCAAAATA-----A-CACT--CTGCTTGT------TGTCC------------------------------------------A-ATGTC-------AGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTAT----G--ACGACCTGATGACTTTAAGGGAATATTTT---CCTGT-AGTTT------------GTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA-------ATGA-CATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGCCATGTGGGTGAGAGGTAGTGAGCAC-TGATA-------TCTAT---TTATCTGTACCACTATGGCA-T-T-GATGAATGAGTGGATAT---ACAT---AGAATG---AAGAAGGAACACAAAGAGGAA-ATT-TAAAAAAA------A--A-TCT-G--TAAAATTGGT-AAAGA-ATATTAGGGTC--GGGCTAAAAAA-A-----------------CGGATACAA---ACT------TTTCT-----GTTATTCCCAattatttagt
gi|3 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaaGAAATCGGAAACAAACAATT------TTTTT-----TTTAAGCCTAAgtatatttga
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttaATTGTTTGTTTCCGATTTCATGGCC-AAAACAAAT-AAAATAGGTAGATAGTGATTT-----T----TTTA-------A-------------AAACCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAATGCA-TACT--C-ATTTGTCATTTCGGTACAGT------A------TATT----CGT-atggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaTTT----G--ACGACCAGGTGACTTTAAAAGAATATTTA---ACTGT-ATTTTGCGAGATAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNCGAACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACACCATATTGGCGAAAAGTAGTGAGCATTTTATA-atttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|4 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaTTAGTTTTAATTCTTCATGCCAATTATTTACACTGTCATATTGGCGAGAGGTGATGAGCACTTTATATT--TACTATATATCAAATAAGCATCTCTATGACG-T---------------GAAAG---ACAT---GGAAAG---A--ACA-----CAATGAGGAA-AATATAAAGTAT------TTTATTTTTATTCAAAATCGGTCAAAAA-AGAGTA--GTCG-GGGCTAAAAAATA--GT----TCAGGAAACCAGAAACAATC-A-T------TTTTT-----GTTAGACCTAAcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : attggtacctccttgaaattgtttccattatactgaaaaaaactCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGCCAGATTGGTGAGAGTTAATGAGCACTTCA-A-AGTTACTATGTATATAATAGGCAGCTCTAAAATG-T-T-GAT---TTCACAGAAGGAACACATTGAGGAAAATTCA--AAA------AAAGAGGAA-AAT-TCAAAAAA------G--ATTCTGA--CAGTATCAGTCAAAAAGAG---AGAGTCGTGTTCTCAAAAATAGGGTTGG-TTGGAAAACCAGAAACAAAC-A-T------TTATT-----GTTACATCTAAtagatactaaacgtgagagttgttaactcagcaatat
gi|6 : tatATTGTTTATCTCCAATTTCATGGCTGAAAAAAAATTAGGGTAAGTAGGTCGAAATATATATAT-AATTTTAT------A---TTTTTTTTTAAAACCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAAAACA-CAGTTCCTGCTTGTCACTTCTGTACAGTATATTCA------TGCTA---CATGT---AATATTTAGAA-ATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTCtttataatatttctgtttgcaggtgaag
gi|7 : tgaatcaggtctcaaggccttaaaaatataaAGCAAGTGCTTTATA-A--TGCTCTATACCTTATAAACATCTCCATAATG-T-TTGATGAATGAACAGAAAA---GCAT---CAAATG---A--AAG-----AAAAGAGAAA-AAG-TTAAAAAC------ATTTTTTTCG--CAGAATTGGTATAAAA-AGATTAGGGTCG-GAGTTAAAAAATAGGGTC-GTTTGGGATACCAGAAACAAAC-AAT------TTTTTTATGCATTATACCT
gi|8 : ccattttgagatgttcccatgATGGCCGACAAAA--T-AGGGAAGGTAGGTCTGGATAT-----T-----TTAA------AAAAT----------AACCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATGTT----------------AACG-CATT--CTGCTTGTCATTTCTGTACAGT------ATATGTGTGCTA---CAT-TCGAAAT-TTA-GAA-ATGTCCAATGTTAGATTCTAATAGATCT--ATCGATGTCAATTCTATTCTttttgtaacttgaacgtgacaagatattaatac
gi|9 : GAGAGGAAAG---ACAC---AGAAAG---A--AAA-----CAAAGAGGAA-AAT-TAAATTAAGTTTTTATTTTTCTCA--CAAAATCTGT--AAAT-AAATTAGGGTCG-GGGTTAAAAAATAGAGCCAG-CCGGGAAACGAGAAACAAAC-ATTTGTATATTTTT-----GTTATACCTAA
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 000000000000000000000000000000000000 1 111 11 0000000000000000000000000000000000 1111 1111 3333333 11 1 1 333333333 1111 1 33333333 22222222 11111
lowQualScore : 1 3 0 8 1 111111111111111111111111111111111111 0 1 3 0 1 1 222 8 11 0 0 9999999999999999999999999999999999 3 3 1 3333 1 3 2222 77 33 6666 5 7 33 1 2 3333333 33 3 1 44 7777 0 1 1 2 8 4 666 666 1 666 55 99999 0 5 222222222 5555 0 6 1 99 1 00000000 0 1 0 5 33333333 22222
lowQualScore : . . . . . .................................... . . . . . . ... . .. . . .................................. . . . .... . . .... .. .. .... . . .. . . ....... .. . . .. .... . . . . . . ... ... . ... .. ..... . . ......... .... . . . .. . ........ . . . . ........ .....
lowQualScore : 2 2 8 0 4 888888888888888888888888888888888888 8 4 8 8 4 0 000 0 00 8 8 6666666666666666666666666666666666 2 2 4 4444 2 8 1111 99 44 6666 7 8 88 0 6 2222222 22 2 0 77 6666 7 6 0 0 0 0 444 444 0 444 00 11111 0 0 000000000 0000 8 7 0 22 0 77777777 4 1 4 0 00000000 55555
consensus : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTACGT-T---AAT-TT--GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Reference ( family-2962 ) : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTACGT-T---AAT-TT--GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
gi|1 : ATTAATTGTATCTGATTTCATGGCTAAAAAAAAAA-AAGGTAGGTTGGTAAGGATAT-----TTA--TTTATTTGTTTA---TTTTT-----AATCCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAACAACAACACT--CTGCTTGTCATTTCTGTACATTC-----A------TACTAA-------AAC-GT--AACATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTTT----G--AAGACCTGGTGACTTTAAGGGAATATTTT---TCTAT-ATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGA-CATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACACCATATTGGCGAGAGGTAGTGAGCACTTAATA-A--T-----AAATCTAATAAGCATCTCTATGATA-T-T-GATCAATTAGCGGAAAG---ACAT---TGACAG---A--ACA-----CAAAGAGGAA-AAT-TAAAAAAA------AAAATTCTCA--CAAAATCAGACAAAAA-AGATAAAGGTTT-GTGCTCAAAAATACAGTCTG-TTAGAGAACCTAAAACAAAC-CCC------TTTTT-----GTAATGCCTAA
gi|10 : ----G--ACAACCTGGAGACTTTAA----ATATTTT---ACTGT-ATTTTATGATCTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNTG----TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATTGACACCgg
gi|11 : TCTAATATATGAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTC-AAACTTCTTGTTAG--ATAAACTGGTGACTTTAGGGGAAAATTCTCAAGCTGT-agagagg
gi|12 : ttgtaaaaaagatataataattatgcttgtcattcGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGGAAAG---GCGT---GGAATG---A--AAG-----CAAAGAgg
gi|13 : ctactattttgagatttccccatgagcacGGGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCAATTATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|14 : ctaacattttgggattttcgcatgagcacGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGAAAAG---TCAT---GGAATG---A--AAG-----CAAAGA
gi|15 : ctactattttgagattttcccatgagcacGAGCGCTTTATA-A--TGCTTTATACCTTCTGAGCGCCTCAATGATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|16 : tgaaatgatttccccatgaacaaGAGTGCTTTATA-A--TGCTTTATACCTTGTGAGCGTCTCAATGATGTT-T-GATGAATGAACGGAAAA---GCAT---GGACAG---A--AAG-----CAAAGAG
gi|17 : ctaccattttgagatttttcccatgagcacAAAATAGGATCCG-TCGGGAAACCGGAAACAAAC-AC-------GTATT-----GTTATa
gi|18 : ctcacATGTCAATTTCCGTCTCACCAAAACTTTTT----GTGGCGAGCCGTTGACTTTAACAGAATATTTT---CC-GTAACTTTGTGcgtcatttatatatgctggcagcgtaa
gi|19 : TCAAAACTCTTT----G--GCAACTTAGTGACTTTAAGAGAATATTTT----CT-T-ATTCTACGATCTATCTCG
gi|2 : TTGTTTCTGATTTCATGGCT-AGAAAAAAT-AGGGTAGATAGGTCAGGATAT-------A--TTT------------TTTTT-----TAACATGATGTTATGTTGTGTCACTG----------TATTTTTAACAAGTTTTGTACGCAAAATA-----A-CACT--CTGCTTGT------TGTCC---------------------------------------AATGTC-------AGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTAT----G--ACGACCTGATGACTTTAAGGGAATATTTT---CCTGT-AGTTT------------GTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA-------ATGA-CATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGCCATGTGGGTGAGAGGTAGTGAGCAC-TGATA-------TCTAT---TTATCTGTACCACTATGGCA-T-T-GATGAATGAGTGGATAT---ACAT---AGAATG---AAGAAGGAACACAAAGAGGAA-ATT-TAAAAAAA------A--A-TCT-G--TAAAATTGGT-AAAGA-ATATTAGGGTC--GGGCTAAAAAA-A-----------------CGGATACAA---ACT------TTTCT-----GTTATTCCCAattatttagt
gi|3 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaaGAAATCGGAAACAAACAATT------TTTTT-----TTTAAGCCTAAgtatatttga
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttaATTGTTTGTTTCCGATTTCATGGCC-AAAACAAAT-AAAATAGGTAGATAGTGATTT-----T----TTTA-------A-------------AAACCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAATGCA-TACT--C-ATTTGTCATTTCGGTACAGT------A------TATT-CGT------AT-TT--GAatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaTTT----G--ACGACCAGGTGACTTTAAAAGAATATTTA---ACTGT-ATTTTGCGAGATAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNCGAACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACACCATATTGGCGAAAAGTAGTGAGCATTTTATA-cgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|4 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaTTAGTTTTAATTCTTCATGCCAATTATTTACACTGTCATATTGGCGAGAGGTGATGAGCACTTTATATT--TACTATATATCAAATAAGCATCTCTATGACG-T---------------GAAAG---ACAT---GGAAAG---A--ACA-----CAATGAGGAA-AATATAAAGTAT------TTTATTTTTATTCAAAATCGGTCAAAAA-AGAGTA--GTCG-GGGCTAAAAAATA--GT----TCAGGAAACCAGAAACAATC-A-T------TTTTT-----GTTAGACCTAAcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : attggtacctccttgaaattgtttccattatactgaaaaaaactCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGCCAGATTGGTGAGAGTTAATGAGCACTTCA-A-AGTTACTATGTATATAATAGGCAGCTCTAAAATG-T-T-GAT---TTCACAGAAGGAACACATTGAGGAAAATTCA--AAA------AAAGAGGAA-AAT-TCAAAAAA------G--ATTCTGA--CAGTATCAGTCAAAAAGAG---AGAGTCGTGTTCTCAAAAATAGGGTTGG-TTGGAAAACCAGAAACAAAC-A-T------TTATT-----GTTACATCTAAtagatactaaacgtgagagttgttaactcagcaatat
gi|6 : tatATTGTTTATCTCCAATTTCATGGCTGAAAAAAAATTAGGGTAAGTAGGTCGAAATATATATAT-AATTTTAT------A---TTTTTTTTTAAAACCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAAAACA-CAGTTCCTGCTTGTCACTTCTGTACAGTATATTCA------TGCTACATGT---AATATTTAGAAATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTCtttataatatttctgtttgcaggtgaag
gi|7 : tgaatcaggtctcaaggccttaaaaatataaAGCAAGTGCTTTATA-A--TGCTCTATACCTTATAAACATCTCCATAATG-T-TTGATGAATGAACAGAAAA---GCAT---CAAATG---A--AAG-----AAAAGAGAAA-AAG-TTAAAAAC------ATTTTTTTCG--CAGAATTGGTATAAAA-AGATTAGGGTCG-GAGTTAAAAAATAGGGTC-GTTTGGGATACCAGAAACAAAC-AAT------TTTTTTATGCATTATACCT
gi|8 : ccattttgagatgttcccatgATGGCCGACAAAA--T-AGGGAAGGTAGGTCTGGATAT-----T-----TTAA------AAAAT----------AACCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATGTT----------------AACG-CATT--CTGCTTGTCATTTCTGTACAGT------ATATGTGTGCTACAT-TCGAAAT-TTA-GAAATGTCCAATGTTAGATTCTAATAGATCT--ATCGATGTCAATTCTATTCTttttgtaacttgaacgtgacaagatattaatac
gi|9 : GAGAGGAAAG---ACAC---AGAAAG---A--AAA-----CAAAGAGGAA-AAT-TAAATTAAGTTTTTATTTTTCTCA--CAAAATCTGT--AAAT-AAATTAGGGTCG-GGGTTAAAAAATAGAGCCAG-CCGGGAAACGAGAAACAAAC-ATTTGTATATTTTT-----GTTATACCTAA
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 000000000000000000000000000000000000 1 111 11 0000000000000000000000000000000000 1111 1111 3333333 11 1 1 333333333 1111 1 33333333 22222222 11111
lowQualScore : 1 3 0 8 1 111111111111111111111111111111111111 0 1 3 0 1 1 222 8 11 0 0 9999999999999999999999999999999999 3 3 1 3333 1 3 2222 77 33 6666 5 7 33 1 2 3333333 33 3 1 44 7777 0 1 1 2 8 4 666 666 1 666 55 99999 0 5 222222222 5555 0 6 1 99 1 00000000 0 1 0 5 33333333 22222
lowQualScore : . . . . . .................................... . . . . . . ... . .. . . .................................. . . . .... . . .... .. .. .... . . .. . . ....... .. . . .. .... . . . . . . ... ... . ... .. ..... . . ......... .... . . . .. . ........ . . . . ........ .....
lowQualScore : 2 2 8 0 4 888888888888888888888888888888888888 8 4 8 8 4 0 000 0 00 8 8 6666666666666666666666666666666666 2 2 4 4444 2 8 1111 99 44 6666 7 8 88 0 6 2222222 22 2 0 77 6666 7 6 0 0 0 0 444 444 0 444 00 11111 0 0 000000000 0000 8 7 0 22 0 77777777 4 1 4 0 00000000 55555
consensus : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTACGT-T---AAT-TT--GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Reference ( family-2962 ) : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTACGT-T---AAT-TT--GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
gi|1 : ATTAATTGTATCTGATTTCATGGCTAAAAAAAAAA-AAGGTAGGTTGGTAAGGATAT-----TTA--TTTATTTGTTTA---TTTTT-----AATCCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAACAACAACACT--CTGCTTGTCATTTCTGTACATTC-----A------TACTAA-------AAC-GT--AACATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTTT----G--AAGACCTGGTGACTTTAAGGGAATATTTT---TCTAT-ATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGA-CATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACACCATATTGGCGAGAGGTAGTGAGCACTTAATA-A--T-----AAATCTAATAAGCATCTCTATGATA-T-T-GATCAATTAGCGGAAAG---ACAT---TGACAG---A--ACA-----CAAAGAGGAA-AAT-TAAAAAAA------AAAATTCTCA--CAAAATCAGACAAAAA-AGATAAAGGTTT-GTGCTCAAAAATACAGTCTG-TTAGAGAACCTAAAACAAAC-CCC------TTTTT-----GTAATGCCTAA
gi|10 : ----G--ACAACCTGGAGACTTTAA----ATATTTT---ACTGT-ATTTTATGATCTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNTG----TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATTGACACCgg
gi|11 : TCTAATATATGAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTC-AAACTTCTTGTTAG--ATAAACTGGTGACTTTAGGGGAAAATTCTCAAGCTGT-agagagg
gi|12 : ttgtaaaaaagatataataattatgcttgtcattcGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGGAAAG---GCGT---GGAATG---A--AAG-----CAAAGAgg
gi|13 : ctactattttgagatttccccatgagcacGGGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCAATTATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|14 : ctaacattttgggattttcgcatgagcacGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGAAAAG---TCAT---GGAATG---A--AAG-----CAAAGA
gi|15 : ctactattttgagattttcccatgagcacGAGCGCTTTATA-A--TGCTTTATACCTTCTGAGCGCCTCAATGATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|16 : tgaaatgatttccccatgaacaaGAGTGCTTTATA-A--TGCTTTATACCTTGTGAGCGTCTCAATGATGTT-T-GATGAATGAACGGAAAA---GCAT---GGACAG---A--AAG-----CAAAGAG
gi|17 : ctaccattttgagatttttcccatgagcacAAAATAGGATCCG-TCGGGAAACCGGAAACAAAC-AC-------GTATT-----GTTATa
gi|18 : ctcacATGTCAATTTCCGTCTCACCAAAACTTTTT----GTGGCGAGCCGTTGACTTTAACAGAATATTTT---CC-GTAACTTTGTGcgtcatttatatatgctggcagcgtaa
gi|19 : TCAAAACTCTTT----G--GCAACTTAGTGACTTTAAGAGAATATTTT----CT-T-ATTCTACGATCTATCTCG
gi|2 : TTGTTTCTGATTTCATGGCT-AGAAAAAAT-AGGGTAGATAGGTCAGGATAT-------A--TTT------------TTTTT-----TAACATGATGTTATGTTGTGTCACTG----------TATTTTTAACAAGTTTTGTACGCAAAATA-----A-CACT--CTGCTTGT------TGTCC---------------------------------------AATGTC-------AGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTAT----G--ACGACCTGATGACTTTAAGGGAATATTTT---CCTGT-AGTTT------------GTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA-------ATGA-CATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGCCATGTGGGTGAGAGGTAGTGAGCAC-TGATA-------TCTAT---TTATCTGTACCACTATGGCA-T-T-GATGAATGAGTGGATAT---ACAT---AGAATG---AAGAAGGAACACAAAGAGGAA-ATT-TAAAAAAA------A--A-TCT-G--TAAAATTGGT-AAAGA-ATATTAGGGTC--GGGCTAAAAAA-A-----------------CGGATACAA---ACT------TTTCT-----GTTATTCCCAattatttagt
gi|3 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaaGAAATCGGAAACAAACAATT------TTTTT-----TTTAAGCCTAAgtatatttga
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttaATTGTTTGTTTCCGATTTCATGGCC-AAAACAAAT-AAAATAGGTAGATAGTGATTT-----T----TTTA-------A-------------AAACCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAATGCA-TACT--C-ATTTGTCATTTCGGTACAGT------A------TATT-CGT------AT-TT--GAatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaTTT----G--ACGACCAGGTGACTTTAAAAGAATATTTA---ACTGT-ATTTTGCGAGATAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNCGAACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACACCATATTGGCGAAAAGTAGTGAGCATTTTATA-cgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|4 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaTTAGTTTTAATTCTTCATGCCAATTATTTACACTGTCATATTGGCGAGAGGTGATGAGCACTTTATATT--TACTATATATCAAATAAGCATCTCTATGACG-T---------------GAAAG---ACAT---GGAAAG---A--ACA-----CAATGAGGAA-AATATAAAGTAT------TTTATTTTTATTCAAAATCGGTCAAAAA-AGAGTA--GTCG-GGGCTAAAAAATA--GT----TCAGGAAACCAGAAACAATC-A-T------TTTTT-----GTTAGACCTAAcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : attggtacctccttgaaattgtttccattatactgaaaaaaactCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGCCAGATTGGTGAGAGTTAATGAGCACTTCA-A-AGTTACTATGTATATAATAGGCAGCTCTAAAATG-T-T-GAT---TTCACAGAAGGAACACATTGAGGAAAATTCA--AAA------AAAGAGGAA-AAT-TCAAAAAA------G--ATTCTGA--CAGTATCAGTCAAAAAGAG---AGAGTCGTGTTCTCAAAAATAGGGTTGG-TTGGAAAACCAGAAACAAAC-A-T------TTATT-----GTTACATCTAAtagatactaaacgtgagagttgttaactcagcaatat
gi|6 : tatATTGTTTATCTCCAATTTCATGGCTGAAAAAAAATTAGGGTAAGTAGGTCGAAATATATATAT-AATTTTAT------A---TTTTTTTTTAAAACCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAAAACA-CAGTTCCTGCTTGTCACTTCTGTACAGTATATTCA------TGCTACATGT---AATATTTAGAAATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTCtttataatatttctgtttgcaggtgaag
gi|7 : tgaatcaggtctcaaggccttaaaaatataaAGCAAGTGCTTTATA-A--TGCTCTATACCTTATAAACATCTCCATAATG-T-TTGATGAATGAACAGAAAA---GCAT---CAAATG---A--AAG-----AAAAGAGAAA-AAG-TTAAAAAC------ATTTTTTTCG--CAGAATTGGTATAAAA-AGATTAGGGTCG-GAGTTAAAAAATAGGGTC-GTTTGGGATACCAGAAACAAAC-AAT------TTTTTTATGCATTATACCT
gi|8 : ccattttgagatgttcccatgATGGCCGACAAAA--T-AGGGAAGGTAGGTCTGGATAT-----T-----TTAA------AAAAT----------AACCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATGTT----------------AACG-CATT--CTGCTTGTCATTTCTGTACAGT------ATATGTGTGCTACAT-TCGAAAT-TTA-GAAATGTCCAATGTTAGATTCTAATAGATCT--ATCGATGTCAATTCTATTCTttttgtaacttgaacgtgacaagatattaatac
gi|9 : GAGAGGAAAG---ACAC---AGAAAG---A--AAA-----CAAAGAGGAA-AAT-TAAATTAAGTTTTTATTTTTCTCA--CAAAATCTGT--AAAT-AAATTAGGGTCG-GGGTTAAAAAATAGAGCCAG-CCGGGAAACGAGAAACAAAC-ATTTGTATATTTTT-----GTTATACCTAA
blockSeqs : T G T A ATATATAATTTTATATTTTTTTTTAA C G C T AAT . TC ATATTCATGCTACATGTAATATTTA T A A ATAA C A GTTA TG GG CAAG A A TC T T NNN AA T G CA AGT T A T A T AAC TGA T TTC AG GAACA T A GTTTTTATT TATT C G G GT G GGATCCG G A TTTGTATA TATGC
blockSeqs : T G . G ATTTTTTTTT T T T A AAA . . ATATGTGTGCTACATTCGAAATTTA C C A CTAA A A . . CA A . G TC T C NNN A T C AG TT T A T A . . . T . . . T . TTT GA C . G G G GGGTTGG G . CT .
blockSeqs : C . . G TTTAAAAAAT C T . A A . . ATATTCGTATTT C T A AGAA T G . . GA C . A GA A N . . . C AG A T A T . . . . T . . . . . ATT CG A . G G T GGGTCGT G . TT .
blockSeqs : . . T TTTTAAA . . . . . . . . . . T CT . . . GG C . G . . . T CA A T A . . . . . T . . . . . A CA . . G G A GAGCCAG A . AT .
blockSeqs : . . AA A . . G CC A T A . . . . . A . . . . . G G . . . . G GT A . C .
blockSeqs : . . . . . A C T . . . . . T . . . . . . A . T .
blockSeqs : A A T . . . . . A . . . . . A . T .
blockSeqs : A A T . . . . . A . . .
blockSeqs : . C C . . . . . T . . .
blockSeqs : . . A . . .
blockSeqCons : ATTTTTTTAAA************************* ATATCGTATTT*********************** ATT******
originalCons : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT-----T-A--TTTAT------A---TTTTT-----AAACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGT------A------TGCTACGT-T---AAT-TT--GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
finalCons : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATATATTTTTTTAAA-------------------------AACCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAAAACA-CACT--CTGCTTGTCATTTCTGTACAGTATATCGTATTT-----------------------GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTTT----G--ACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAAATT------ATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1 888888888888888888888888 2222222222222 1 22222 4444444444444444444444444444444444444444444444444444 1111111 1111 3333333 11 1 1 333333333 1111 1 33333333 22222222 11111
lowQualScore : 1 3 0 8 1 0 222222222222222222222222 0 9999999999999 0 1 3 0 1 00000 77 99 6 6 2222222222222222222222222222222222222222222222222222 1 3333 1 3 2222222 33 6666 5 7 33 1 2 3333333 33 3 1 44 7777 0 1 1 2 8 4 666 666 1 666 55 99999 0 5 222222222 5555 0 6 1 99 1 00000000 0 1 0 5 33333333 22222
lowQualScore : . . . . . . ........................ . ............. . . . . . ..... .. .. . . .................................................... . .... . . ....... .. .... . . .. . . ....... .. . . .. .... . . . . . . ... ... . ... .. ..... . . ......... .... . . . .. . ........ . . . . ........ .....
lowQualScore : 2 2 8 0 4 8 222222222222222222222222 6 4444444444444 8 4 8 8 4 33333 77 22 7 7 2222222222222222222222222222222222222222222222222222 4 4444 2 8 3333333 44 6666 7 8 88 0 6 2222222 22 2 0 77 6666 7 6 0 0 0 0 444 444 0 444 00 11111 0 0 000000000 0000 8 7 0 22 0 77777777 4 1 4 0 00000000 55555
consensus : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT------AT----------------TTTTTTAA----AAA----CCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAA---AACA-CACT--CTGCTTGTCATT-TCTGTACAGT-ATA-T-----C-------------GT------------ATTT-GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTT--T----GACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
Reference ( family-2962 ) : ATTGTTTGTTTCCGATTTCATGGCCGAAAAAAAAT-AGGGTAGGTAGGTCGGGATAT------AT----------------TTTTTTAA----AAA----CCTGATGTTATGTTGTGTCACTGTTTCATCGTNTATTTTTAACATGTTTTGTACGTAAAAAAAA---AACA-CACT--CTGCTTGTCATT-TCTGTACAGT-ATA-T-----C-------------GT------------ATTT-GAAATGTCCAATGTCAGAATCTGATAGAGATAAATCAATGTCAATTCCATTCTCTTCAAAACTTTT--T----GACGACCTGGTGACTTTAAGGGAATATTTT---NCTGT-ATTTTGCGATCTATCTCGTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA----CATATGA-CATGCCATTTTGGTNATTTTTTACTCCTCGCGCCAATTATTGACGCCGCCATATTGGCGAGAGGTAGTGAGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCNATGATG-T-T-GATGAATGAGCGGAAAG---GCAT---GGAANG---A--AAG-----CAAAGAGGAA-AAT-TAAAAAAA------ATTATTCTCG--CAAAATCGGTCAAAAA-AGATTAGGGTCG-GGGCTAAAAAATAGGGTC-G-TCGGGAAACCGGAAACAAAC-ACT------TTTTT-----GTTATACCTAA
gi|1 : ATTAATTGTATCTGATTTCATGGCTAAAAAAAAAA-AAGGTAGGTTGGTAAGGATATTTATTTAT----------------TTGTTTATTTTTAAT----CCTGATGTTATGTTGTGTCACTGTTTGATTGTGTATTTTTAACATGGTTTGTATGTAAAAAAAC---AACAACACT--CTGCTTGTCATT-TCTGTACATTCATA-CTAAAAC-------------GT------------A-----ACATGTCCAATGTCAGATTCTGATGGAGAAATATCATTGTTAATTCCATTCTCTTCAAAACTTTT--T----GAAGACCTGGTGACTTTAAGGGAATATTTT---TCTAT-ATTTTCCGATTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGA-CATGCCATTTTGGTGATTTTTTACTCCTGACACCAATTATTGAAGACACCATATTGGCGAGAGGTAGTGAGCACTTAATA-A--T-----AAATCTAATAAGCATCTCTATGATA-T-T-GATCAATTAGCGGAAAG---ACAT---TGACAG---A--ACA-----CAAAGAGGAA-AAT-TAAAAAAA------AAAATTCTCA--CAAAATCAGACAAAAA-AGATAAAGGTTT-GTGCTCAAAAATACAGTCTG-TTAGAGAACCTAAAACAAAC-CCC------TTTTT-----GTAATGCCTAA
gi|10 : ----GACAACCTGGAGACTTTAA----ATATTTT---ACTGT-ATTTTATGATCTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNTG----TGCCATTTTGATGATGTTTTACTTCTCACGCAAATTATTGACACCgg
gi|11 : GTAAAAAAGATATAATA--ATT--ATGCTTGTCATTCTCT----AAT-ATA-T------------------------------------------------------GAATCTGATAAAGATAAATCTATGTCGATTTTATTCTCCTC-AAACTTCT--TGTTAGATAAACTGGTGACTTTAGGGGAAAATTCTCAAGCTGT-agagagg
gi|12 : ttGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGGAAAG---GCGT---GGAATG---A--AAG-----CAAAGAgg
gi|13 : ctactattttgagatttccccatgagcacGGGCGCTTTATA-A--TGCTTTATACCTTATGAGCGTCTCAATTATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|14 : ctaacattttgggattttcgcatgagcacGAGCGCTTTATA-A--TGCTTTAAACCTTATGAGCGTCTCAATGATGTT-T-GATGAATGAGCGAAAAG---TCAT---GGAATG---A--AAG-----CAAAGA
gi|15 : ctactattttgagattttcccatgagcacGAGCGCTTTATA-A--TGCTTTATACCTTCTGAGCGCCTCAATGATG-TAT-GATGAATGAGCGAAAAG---GCAT---GGAATG---A--AAG-----CAAAGAGAAATAAT-TAAtatataattaa
gi|16 : tgaaatgatttccccatgaacaaGAGTGCTTTATA-A--TGCTTTATACCTTGTGAGCGTCTCAATGATGTT-T-GATGAATGAACGGAAAA---GCAT---GGACAG---A--AAG-----CAAAGAG
gi|17 : ctaccattttgagatttttcccatgagcacAAAATAGGATCCG-TCGGGAAACCGGAAACAAAC-AC-------GTATT-----GTTATa
gi|18 : ctcacATGTCAATTTCCGTCTCACCAAAACTTTTTGT----GGCGAGCCGTTGACTTTAACAGAATATTTT---CC-GTAACTTTGTGcgtcatttatatatgctggcagcgtaa
gi|19 : TCAAAACTCTT--T----GGCAACTTAGTGACTTTAAGAGAATATTTT----CT-T-ATTCTACGATCTATCTCG
gi|2 : TTGTTTCTGATTTCATGGCT-AGAAAAAAT-AGGGTAGATAGGTCAGGATAT------AT----------------TTTTTT-T----TAA----CATGATGTTATGTTGTGTCACTG----------TATTTTTAACAAGTTTTGTACGCAAAATA--------A-CACT--CTGCTTGT-------TGTCCAAT--------------------------------------------------------GTCAGAATTTGATAGAGCTAAATCAACGTCAATTCCTTTCTCTTCGAAACTTTA--T----GACGACCTGATGACTTTAAGGGAATATTTT---CCTGT-AGTTT------------GTGATCTATCTCGATGGTTCAATATTGCTCCACTTCCTCATTTGTTTATATTGTGTTGCAATGA-------ATGA-CATGCTAGTTTGGTCATTATTTGCTCCTAGCAGCAATTATTGACACTGCCATGTGGGTGAGAGGTAGTGAGCAC-TGATA-------TCTAT---TTATCTGTACCACTATGGCA-T-T-GATGAATGAGTGGATAT---ACAT---AGAATG---AAGAAGGAACACAAAGAGGAA-ATT-TAAAAAAA------A--A-TCT-G--TAAAATTGGT-AAAGA-ATATTAGGGTC--GGGCTAAAAAA-A-----------------CGGATACAA---ACT------TTTCT-----GTTATTCCCAattatttagt
gi|3 : gtatggaattcaggtgtttatatttttgttcaggactagaaaattaagaaaGAAATCGGAAACAAACAATT------TTTTT-----TTTAAGCCTAAgtatatttga
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttaATTGTTTGTTTCCGATTTCATGGCC-AAAACAAAT-AAAATAGGTAGATAGTGAT--------------------------TTTTTTAA----AAA----CCCGATGTTATGTTGTGTTACTGTTTCATCGTGTATTTTTAACATGTTTTGTA--TAAAAAAAA---TGCA-TACT--C-ATTTGTCATT-TCGGTACAGT-ATATT-----C-------------GT------------ATTT-GAatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtatttgacgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|3 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaTT--T----GACGACCAGGTGACTTTAAAAGAATATTTA---ACTGT-ATTTTGCGAGATAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNCGAACA----ATTTTGATCATTTTTTACTCCTAGCGCCAATTATTGACGACACCATATTGGCGAAAAGTAGTGAGCATTTTATA-cgaccaggtgactttaaaagaatatttaactgtattttgcgagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaacaattttgatcattttttactcctagcgccaattattgacgacaccatattggcgaaaagtagtgagcattttatacgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|4 : tacattgtaactggacgaaaatgagtatttttctttttgttattaggcttaaaaaaaaaattgtttgtttccgatttcatggccaaaacaaataaaataggtagatagtgatttttttaaaaacccgatgttatgttgtgttactgtttcatcgtgtatttttaacatgttttgtataaaaaaaatgcatactcatttgtcatttcggtacagtatattcgtaTTAGTTTTAATTCTTCATGCCAATTATTTACACTGTCATATTGGCGAGAGGTGATGAGCACTTTATATT--TACTATATATCAAATAAGCATCTCTATGACG-T---------------GAAAG---ACAT---GGAAAG---A--ACA-----CAATGAGGAA-AATATAAAGTAT------TTTATTTTTATTCAAAATCGGTCAAAAA-AGAGTA--GTCG-GGGCTAAAAAATA--GT----TCAGGAAACCAGAAACAATC-A-T------TTTTT-----GTTAGACCTAAcgacgttgataaatgtacgcaaacatataacaggaacacaa
gi|5 : attggtacctccttgaaattgtttccattatactgaaaaaaactCATATTGGTGATTTTTAACTTCTCCTGCCAATTATTGACGCCGCCAGATTGGTGAGAGTTAATGAGCACTTCA-A-AGTTACTATGTATATAATAGGCAGCTCTAAAATG-T-T-GAT---TTCACAGAAGGAACACATTGAGGAAAATTCA--AAA------AAAGAGGAA-AAT-TCAAAAAA------G--ATTCTGA--CAGTATCAGTCAAAAAGAG---AGAGTCGTGTTCTCAAAAATAGGGTTGG-TTGGAAAACCAGAAACAAAC-A-T------TTATT-----GTTACATCTAAtagatactaaacgtgagagttgttaactcagcaatat
gi|6 : tatATTGTTTATCTCCAATTTCATGGCTGAAAAAAAATTAGGGTAAGTAGGTCGAAATAT------ATATATAATTTTATATTTTTTTTT-A----AAA----CCTGACGTTATGTTGTGTCGCTGTTCCATTGTTTATCTTTAACATGTTTTCTATGTAAAAAAAA---AACA-CAGTTCCTGCTTGTCACT-TCTGTACAGT-ATA-T-----TCATGCTACATGTAAT------------ATTTAGAAATGTCCAATGTCAGAATCTGATAGAGAGAAATTAATGTCAATTTCATTCtttataatatttctgtttgcaggtgaag
gi|7 : tgaatcaggtctcaaggccttaaaaatataaAGCAAGTGCTTTATA-A--TGCTCTATACCTTATAAACATCTCCATAATG-T-TTGATGAATGAACAGAAAA---GCAT---CAAATG---A--AAG-----AAAAGAGAAA-AAG-TTAAAAAC------ATTTTTTTCG--CAGAATTGGTATAAAA-AGATTAGGGTCG-GAGTTAAAAAATAGGGTC-GTTTGGGATACCAGAAACAAAC-AAT------TTTTTTATGCATTATACCT
gi|8 : ccattttgagatgttcccatgATGGCCGACAAAA--T-AGGGAAGGTAGGTCTGGATAT---------------------------TTTAA----AAAATAACCTGAT------TTGTGTTACTGTTTCGTCGTTTATTTTTAACATGTT-------------------AACG-CATT--CTGCTTGTCATT-TCTGTACAGT-ATA-TG----T-------------GTGCTACATTCGAAATTTAGAAATGTCCAATGTTAGATTCTAATAGATCT--ATCGATGTCAATTCTATTCTttttgtaacttgaacgtgacaagatattaatac
gi|9 : GAGAGGAAAG---ACAC---AGAAAG---A--AAA-----CAAAGAGGAA-AAT-TAAATTAAGTTTTTATTTTTCTCA--CAAAATCTGT--AAAT-AAATTAGGGTCG-GGGTTAAAAAATAGAGCCAG-CCGGGAAACGAGAAACAAAC-ATTTGTATATTTTT-----GTTATACCTAA