lowQualScore : 1111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 3333333 222 333333 777777777 55555555555555 2 3333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4444444444444 111111 2222222222 44444444444444444444444444 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222 1111 555555555555555 11 33333333333333333333333333 11111111 222222222222222222222 1111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111 1111 2222222222 1111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222222222222222222222222 111111111111 11111 11111111111 3333333333333333 11 11111111111 1111 666666666666666666666666666666666666666666666666666 33333333333333333333333333333333333 1 1 11 33333333333333333333333333333333333 1 11 1111111 1 33333333333333333 222222222 22222222 44444444 111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 33333333333333 1111111 33333333 111111111111 1 7777777777777777777777777777777777777 222222 3333333 444444444 1
lowQualScore : 6 0000000 6 6 6 6 6 999 888888 222222222 00000000000000 1 2 0 1 1111111111111111111 8 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 44 3 2222222222222 777777 55 3 3 6 0000000000 2 4 44444444444444444444444444 4 333 0 22 3 1 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 444 2 44444444444444 33 33 2222 88 2 99 999999999999999 0 8 44 2 5 7 5 66666666666666666666666666 2 11111111 88888888 2 5 666 55555 2 777777777777777777777 6 33 2 0 2 0 2 333 88888888 3333333333 2 33 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888 000000 5 5555 7 0 5555 55555 1 1111111111 2 8888 33 9 3 2 8888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22 1 1 6666666666666666666666666666 333 3333 777777777777 22 1 4444 00000 22222222222 2 3333333333333333 2 55 00 7777 333 00 333 4 55555555555 5 2 2 2 2222 2 111111111111111111111111111111111111111111111111111 1 5 11111111111111111111111111111111111 33 1 33 1 00 2 77777777777777777777777777777777777 2 6 44 2 2 6666666 2 1 6 2 99999 2 22222222222222222 444 444 66666 44444 555555555 2 2 666 555 55555555 3 3 33333333 3 44 888888888 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 55 44444444 0 444 77777777777777 3 9999 666 3 0 3333333 777 55 0 33333333 4 3 333333333333 66 2 1 1 5555555555555555555555555555555555555 4 4 2 77 1 3 111111 4 8888888 2 777777777 6 7
lowQualScore : . ....... . . . . . ... ...... ......... .............. . . . . ................... . .............................................................................................................................................................................................................................................................................................................................................................................................. .. . ............. ...... .. . . . .......... . . .......................... . ... . .. . . . ................................................................................................................................................................................................................ . ... . .............. .. .. .... .. . .. ............... . . .. . . . . .......................... . ........ ........ . . ... ..... . ..................... . .. . . . . . ... ........ .......... . .. ........................................................................................... ... ...... . .... . . .... ..... . .......... . .... .. . . . .... ............................................................................................................................. .. . . ............................ ... .... ............ .. . .... ..... ........... . ................ . .. .. .... ... .. ... . ........... . . . . .... . ................................................... . . ................................... .. . .. . .. . ................................... . . .. . . ....... . . . . ..... . ................. ... ... ..... ..... ......... . . ... ... ........ . . ........ . .. ......... ....................................................................................... . . .. ........ . ... .............. . .... ... . . ....... ... .. . ........ . . ............ .. . . . ..................................... . . . .. . . ...... . ....... . ......... . .
lowQualScore : 0 0000000 0 0 0 0 0 000 555555 555555555 33333333333333 2 0 8 0 0000000000000000000 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 3 5555555555555 444444 00 6 6 5 0000000000 7 0 11111111111111111111111111 3 999 6 44 3 8 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 777 7 77777777777777 77 77 9999 11 7 88 555555555555555 7 6 44 4 7 9 3 22222222222222222222222222 0 11111111 55555555 4 8 555 99999 4 333333333333333333333 8 99 2 6 8 8 2 999 11111111 8888888888 4 22 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222 666666 1 3333 9 2 3333 99999 0 5555555555 4 8888 22 4 8 1 3333 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66 9 8 6666666666666666666666666666 222 9999 666666666666 99 3 5555 55555 00000000000 4 4444444444444444 8 33 33 4444 999 77 777 2 22222222222 4 1 1 1 7777 2 999999999999999999999999999999999999999999999999999 4 7 99999999999999999999999999999999999 44 9 44 4 55 9 44444444444444444444444444444444444 9 1 22 5 4 2222222 4 0 0 5 11111 5 33333333333333333 444 444 77777 99999 111111111 6 9 111 000 55555555 1 1 22222222 3 66 444444444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 5 22 55555555 3 888 11111111111111 6 0000 444 2 8 1111111 000 66 5 88888888 0 4 888888888888 00 8 7 0 9999999999999999999999999999999999999 0 3 1 99 7 7 444444 7 3333333 5 000000000 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCTTTGGTGGAGANNATCAAATGG-AAACT--GCGGGTACTAGA-TGCGCANAAACGTCAAATAATGTAATTTTTGA-T--GA---TTAAA---GGACCAT-AAC-ATCCGA------CA--TCAA----TTG-TCCGA-------------AGA--TAT-------TA-TGGNTA-CANA-ACAAC-TGTGCAAG-----TT-TG----------GTGAAGATCAAATGA--AAANTGCGG--GTGCNAGAGTG---------TC-----A-----TG-CA---CAT------------T-TTTGATTA-TTC-AAGG-GCCATAACTCT-GCG-ACATT--TA--T---CCG-A-T---------T-G-GCC---AG--T---TCA-AGA-A--TT--GTCC--------GA--------------A----------T-T----------A-C----TA----------------------A---CT--GTGTAA-GT-------TT-GGTGAAGAT-----CAA--A-TGAAA-ACTGC--------AGGTGCT-A---NAG----TG---CACACAA--N-GTCAAATAACGCAATTTTTGAC-A-ATTCAAGGG-CCATA-ACT------C--A-AC-------ATTAATTA-TCC--------GAN-------TTGGCC---AG-----T-TCA----------AGAACTTG--------TCCGAG--ATATT---AT-A---G-T-TA---T-AT--N-ACTAC-TGTGTAAGTT---TG-------G-TGAG---G----A-T-C-----A----------AAT-GA---AA-A---C-T---GCAG-GTGCTA--GAGT--G---CACATA-ACGNCAAA----AG--NGCA-AATTTTTGA-TGATTCAAAG-GCCATNA-CT-----CT---GAC-------AN-TAATTATC-------CGAT--------T-TGGCC---AG-----T-T--CGA-G--AA----------CTTGTCC-GAGAT-ATTATGGTT-A---T--------ATA-A--------C-TAC--TG----------------T---GTAA--GTT-----C-----GG------T------C-GA-A-----T----N-----AAA-ACTGCGG--GTG--CTAG------AGT----GCACACAA--GGTCA-----AATA-AT----G--C-A---NTTTTT--GAC-GATTCAAGGGCC-AT---AACTC---NGACANT--AATTA---TC-CGANTTG-G-TCAGTT-NAAG----AACTT-G-TCT-AA---A-----NT-ATTATGGT---T-A---T--------ATA---A-CNA-T---T-GT---G-T--AA-GTTT-G------G-TGAAGA-T---C--A-----AATGA---AAA----ATG----C--NG---GTGCTAG--AGTGC----ACACAA--CGTCAAATA-GC--G-C-AAT-TTT-T-A-CG-A-T-----TCAAGG--GCCAT-AACTCC---GA---CATTA---A-T-A-TTCN---GATTTGGCC-AGT-TC-AAGAACTTGT-CCGAGA-T-------A-TTAT----GG--TT-A---TA-----TA-----ATAACTAC-TGTGTAAGTTTGGT----GAAGA-TCAAATGAAAA-A--TGC---GGGTGCTAG--AGT--GCACACAAG-GTCAAA-TAN-C-G----CA---NTTTTT-AATGATTC------AAGGGCCATA-ACTCCGACATTAATTATC-CGATTTG-GCC---A-GT-TCAAGAACTT-GTCC-GAGAT-ATT----A-TG--------GTTA---T---A-----TA---A-CTAC--TGTGTAAGTTTGG-TGAGGAT---CAA-A------TGA-A-AANT-GCGGGT-GCT--AG--AG----TGCACACAAA--GTCAAATA-G-TACA----------ATTTTTGAACGNT----TCAAGGGCCATA-A---CTCCG---NCA--TTAATNATCC-GATTTGGCCAGTTCAAGAACTTGTCC-GAGAT----ATTATGGTTA-TATATA--T-A--TACTGTGTA-AGTTTGGTNAAGATC--CAATGAAAAAT--G----C---AG-GTGC--N-AN--AGTGCA-CACA----A----CA-AAAAGTTNACGGACAG-A-CGGCG---GAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTC--ACCTTNAGC---TTTGCTCAGNTGAGCTA----AAAAANCTGTCCA-TAATAGCATATTCATTCA
Reference ( gi|1 ) : TATGGACAGCATATCGGATATCCAAATGATAACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGA--AAATGCCAAATTTTGCAGGTACTAG--TGTATATAAAC-TCACATAATGCAATTTTTGA-T--GA---TTCAA---GGACCAT-AAC-ACCCGA------CA--TTAA----TTA-TCCAA-------------AGA--TAT-------TA-TGGTTA-CATA-ACAAT-TGTGTAAG-----TA-AA----------ATGAAGACCAAATAT--AAACTATGA--GTACTAGAGT----------TC-----A-----TG-CA---CAT------------T-TTTGACTA-TTC-AAGG-GCCATACCTCTTGCA-ATATT--TA--T---CCG-A-T---------T-G-GCC---AG--T---TCA-AGA-A--TT--GTTC--------AA--------------A----------T-T----------A-C----TA----------------------A---CT--GTGTAA-GT-------AT-ACCGAAGAT-----TAA--A-TGAAA-ACTAC--------AAATGCT-A---TA-----TG---CACACAA--G-GTCAAATAACACAATTTTTGAC-A-ATTCAAGGG-CAGTA-ATT-----AC--A-AC-------ACTAATTA-TCC--------GAA-------TTGGCC---AG-----T-TCA----------AAAACTTG--------CCCTAG--TTATT---AT-A---A-T-TA---C-AT--T-ACTAC-TGTATTAGTT---TA-------A-TGAG---T----A-T-A-----A----------AAT-AA---AA-A---C-T---ACAC-GTGCTA--GAGT--G---TACATA-ACAACAAA----AA--AACA-AATTTTTGA-TGATTCCAAG-GCCATTA-CT-----GT---GAC-------AA-TAGTTATC-------CGAT--------T-TGACC---AG-----T-T--CGA-T--AA----------CTTATCC-AAGAT-ATTATGGTT-A---T--------ATA-A--------C-TAC--TA----------------G---ATAA--GTT-----T-----AG------T------C-AA-A-----T----T-----AAA-GTTGTGA--GTA--CTAG------AAT----GAACACAA--GGTCA-----AACA-AT----G--C-A---TTTTTT--GAC-AATTCAAGGGTC-AT---TACTC---GGACAGT--AATTA---AC-CGAGTTA-G-TCAGTT-AAAG----AACTT-A-TCT-AA---A-----TT-ATTATGGT---T-A---T--------ATA---A-CAA-T---C-GT---A-T--AA-GTTT-G------A-TGAGAA-T---C--A-----AATGA---AAA----ATG----C--TG---GTGCTAG--AGTGC----ACACAA--GGTCAAATA-GT--G-C-AGT-TTT-T-A-TT-G-T-----TCAAGG--GCCAT-TACTCC---GA---CATTA---A-T-A-TTCA---GATTTAGCC-AGT-TC-AAGAACTTGT-TTGAGA-T-------G-TTAT----GT--TT-A---TA-----TA-----ATAATTAC-TGTGTAAGTCTGGC----GGGGA-TCACATGAAGA-A--TGA---GGTTGCTAG--ATT--GCAAACAAG-GTCAAA-TAT-T-G----TA---TTTTTT-AATGTTCC------AAGGGCCATA-ACTCGGACATTAATAATC-CGATTTG-GCC---A-TT-TTAACAACTT-GTCT-AAAAT-ATT----A-TG--------CTTA---T---A-----TA---A-CTGC--TGGGCAAGCTTGG-TGAGGAT---CAA-C------TGA-A-AATT-TTGAGT-GCT--AT--AG----TGCACACAAA--GTCAAATA-G-TG-A----------ATTTTTGAATGTT----TCAAGGGCCATA-A---TTCTG---TCA--TTAATAATGA-GATTTGGCCAGTTCAAGAACTTGTCC-AAGAT----ATCATGGTTA-TATATA--T-A--TACTATATA-AGTTTAGTGAAGATT--CAATGAAAAAT--G----C---AG-GTGC--A-AC--AGTGCA-CACA----A----CA-AAAAGTTCACAGATAG-A-CAGCA---GAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTC--ACCTTGAGC---TTTGCTCAGATGAGCTA----AAAAAGCTGTCCATTAACGTCTTATTTAATCAGGCTAGTGAATGCCA
gi|6 : AACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGG
gi|4 : gtggttaacatttaagataaattgTTTGATGAAGATCA--AAATGG-AAACT--GCAGGTGCAAGAATGACCAAAAGG-TCAAGTGATGTAAC-----A-TCAGA---TTAAA---GGACCAT-AAC--TCCAA------CA--TTAA----TAAATCCAATTTGGCCAGTTCAAAACTTGTCCCAACATA-TGAATA-TACA-GCAAC-TGTGCAAG-----TT-TG----------ATGAAGATCAAATGA--AAAGTGCAG--GTGCTAGAGTGA--------CT-----A-----TG-CAACACAT-----------------GATTA-----AAAG-GC---------TGTA-ACATT----------------------------G-ACC---AG--C---TCA-AGA-T--TTC-ATTC--------GA--------------AATATTT----T-T----------AAC----TA--------------------------CT--ATGTAA-GT-------TT-GGTGAGGAT-----CAA--A-TAAAG-AATGC--------AGATGCT-A---GAG----TA---CACACAA--G-GTTTA-TAGTACAATTTTTTAT-G-TTTCAAGGGACATTA-CTC-----TG--A-A--------ATTAATTA-TCT--------AAT-------TTGGCC---AA-----T-TCA----------AGAACTTG--------TCTGAG--ATATT---GT-T---A-T-TA---T-AT--A-ACTAC-TATGCAAGTT---CA-------G-TGAA---G----A-TCC-----A----------AAG-AA---AA-A-----T---GCA----GCTG--GAGT--A---CAC----ACACCAAA----AA--cattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gattcaaactaataatccctggattgatagactgatagctaatttggctagtttaaaaaacttgtcccaagatatgattatatagaaatggtgcaggTGGAGAGGATCAAATGA-AAATT--GCGGGTACTAGACTGCAC-CAAACGTCAAATAGTTTAATTTTT---T--GA-------A---CGGCCATTAATTATCCAATTTGGTCAGTTCAAGAACTTG-TCCAA--------------GA--TAG-------TA-TGGGTA-TATT-ACTAT-TGTGTAAG-----TT-TG----------GTAAGGATCATAAAT--AAgtttatagatggtagacaacaggtgattagactagcccacctttaactttgaacaccttagaatggcattaatta
gi|2 : ttaccgtattaatcatctgatttggccaggtcaagaacttatcccaagatattatggttaccgtatattactgtgaaagttACTAT--TGTGGATAAACATTA-ATAATGCAAGTTATGA-T--GACGATTAAATGTGAA--AT-GAT-A----A------CA--GCAA----GTG-TTTGA-------------G----TAT--------A-CAG----CAGG-CCAAC-TATGCATG-----TT-TA----------GCAAAGGACAAATGA--AATCTGCGA--GAACCAAAGT----------CCG----A-----TC-TA---CATAAAACAAAGCAATATTTGAAT--TTC-AAGG-GCAATAACTC---CG-ACATT--TA--TTATCCA-A-TATAATGAACT-G-ACCTACAG--T---TTG-ATA-AC-TT--GT-C--------AA--------------AGATATTATGGT-T----------A-TA---TA----------------------ATTACT--GTGTTC-GTTTGTGTTAT-GATGATGATATGGTCAA--A-TGAAACAATAT--------AGGTGCT-G---AG-----CG---CTCATAA--C-TTCAAATAGCGCAATCTTTGAC-A-ATGCAAGTG-TCATA-ACTCCAAAAT--A-ACTATTTAAAATAATTA-TCA--------AAAATTTAATTTATCC---AAAATTAT-TTATTAAGTTTTTAAGACTTG--------TCCGAG--AAATT---AG-G---G-T-TA---T-AT--A-AGAAG-TGTGCACACT---TG-------A-TGGA---A----A-T-A-----A----------GAT-GA---CA-A---C-T---GCCA-GTGCTA--GAGT--G---CACAAA-ACATCAAA----TG--CATGCAATTTTCGA-CGATTCAAAA-GCCATGA-CT-----CA---GAC-------AT-TAATTATC-------ATAT--------T-TGGTC---GG-----T-----GA------------------------AAGAT-ATTGT-------------------------------C-TAA--GA----------------A---ATTA--GTT-----------AG------G------C-GA-A-----TAT--C-----AAA-ACAGCGG--GTG--CTGA------AGT----GCACACAG--CGCCA-----AATA-AA----A--C-A---ATATTT--GAT-GATTCAAGTGAC-TT---AATTC---CGACATT--AATTA---TCACAAAT-G-G-TCAGTT-TAAG----AACTT-G-TCA-AA---A-----GT-ATAATGGT---T-G---T--------ATACTCA-CTA-T-----GT---A-TGTAT-GTTA-G------A-TGATGA-T---C--A-----AATGA---AAA----ATG----T--AG---ATGCTAG--AATCC----ACACAA--CACCAAATG-GA--G-C-AAT-TTT-T-AACG-G-T-----TCAAAG--GCCAT-TACTCT---GG---CATTA---ATT-A-TCCA---T-TTTGTCC-AGT-TC-AGGAACTTTT-CCGAGA-T-------A-TTAT----GG--TT-A---TA-----TA-----Acaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|6 : aaatagttcccaatattgtcaaaCAAATAAGGTAATTTTTGG-T--AA---TATAA---GAACCGA-AAC-ATA-GA------CA--TTCG----TTG-TC----------------AAA--TTT-------TAATTGCT--CAAG-ACAAGATCTTTAAGGCAGCTACAATGTCTGGTTGATGAAGATCCAATGA--AAAACGTGAAAGTGAGAGAGAACACAACA--TC-----A-----AA-CAGGGCAT------------T-TTTTATGA-ATC-AATG-GCCATAACCCTAGCA-TTATT--TA--T---ATG-A-T---------T-TTGCC---TG--C---TCA-AGA-A--CTA-GTCC--------AAG-------------A----------T-T----------A-T----TATGGTTATCAGTTTATATAAACTA---CT--GTGTAA-GT-------TT-GGTGGGGAT-----CCT--T-TGAAA-ACTGT--------GGATGCT-AAATTA-----GA---CACACA-----GTCAAATAACACAA--TTTAAT-A-AATCAAAGG-TCGTATAT-------C--C-AC-------A-TAA--A-T----------GAT-------TTGGAG---AG-----T-TCA----------AGAACTTG--------TCTGA----TATTTTGGT-A---A-T-TA---T-AT--A-AC---------TAGTT---TG-------G-TAAA---G----A-T-C-----C----------AAT-AA---AA-A---A-T---GCAG-ATGCTA--GAGC--A---CACAAA-ACGA
gi|5 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacATTTTTGACT--AA---TTAAA---GGGCCAT-AAC-aggttaac
gi|4 : aacaattttagcatttttgactaattaaagggccataattctgaagattatggtcagaattggcttgttatcgaacttggctcagattttttagagatacacactttgtgtaagttggcttcagttcagataaagaatactatagtaattgagcggaaacggtaaatgttagc----TTG-TCCCA-------------AGA--TAT-----------GATTA-TATA-GAAAT-GGTGCAGG-----TT-TG----------ATGAAGATCAAA-ATGGAAACTGCAG--GTGCAAGAATGACCAAAAGGTC-----AAGTGATG-TAA--CAT------------C-A--GATTA-----AAGG-ACCATAACTC---CA-ACATTAATAAAT---CCA-A-T---------TTG-GCC---AG--T---TCA-AAA-C--TT--GTCCCAACATATGA--------------A----------TAT----------A-CAG--CA----------------------A---CT--GTGCAA-GT-------TT-GATGAAGAT-----CAA--A-TGAAA-AGTGC--------AGGTGCT-A---GAG----TG------ACTA--T-GC-----AACACA-----TGA-----TTAAAAGG-CTGTA-AC-------------------------------------------A-------TTGACC---AG-----C-TCA----------AGATTTCA--------TTCGAA--ATATT----T-------T-TA-----AC--T-ACTA--TGTA--AGTT---TG-------G-TGAG---G----A-T-C-----A----------AAT-AA---AG-A---A-T---GCAG-ATGCTA--GAGT--A---CACACA-AGGTTTAT----AG--TACA-A-TTTTTTA-TGTTTCAAGG-GACATTA-CT-----CT---GAA-------AT-TAATTATC-------TAAT--------T-TGGCC---AA-----T-T--CAA-G--AA----------CTTGTCT-GAGAT-ATTGTTATT-A---T--------ATA-A--------C-TAC--TA----------------T---GCAA--GTT-----C-----AG------T------G-AA-tctaaagacaaatagtctgaattggctgagtattgaacttggcctagattttatagagatgcatactttgtgtatgtttgcttcagttctgataaagaataatctagttattgagtggaaacggtaaattttagaatttttgactaattaaagggccattactctaaagataatagtctgaattgactggttattgaacttggcctatatttcatagagattaacactttgtgtaagtttgcttcagtttgataaagaatactctagttattgagcagaaatgggcaattttaacatttttgactaatcaaagtgccataactctaaagataatggcccgtattggcctagattttatagaagtacaaactttgtgtaagtttggttcagttccgatgaaaaatactctagttactgaacagaaacgataaacttgacgccacccata
gi|7 : gattcaaactaataatccctggattgatagactgatagctaatttggctagtttaaaaaac----TTA-TCCCA-------------AGA--TAT-------TA-TGGTTACCGTATATTAC-TGTGAAAG-----TT-TG----------GAGAGGATCAAATGA--AAATTGCGG--GTACTAGACT----------GCACCAAA-----CGTCA---AATA-----------G-TTTAATTT-TTTGAACG-GCCAT------------TAAT--TA--T---CCA-ATT---------T-G-GTC---AG--T---TCA-AGA-AC-TT--GTCC--------AAGATAGTATGGGTATA----------T-T----------A-C----T-----------------------A---TT--GTGTAA-GT-------TT-GGTAAGGATCA---TAA--A-TAACA-ATT-C--------AAgatccaaagaaaaatgcagctggagtacacacaccaaaaagtttatagatggtagacaacaggtgattagactagcccacctttaactttgaacaccttagaatggcattaatta
gi|11 : ttaccgtattaatcatctgatttggccaggtcaagaacGAGT----------T------A-----T---A---TAT------------T-TTTGA-TG-TT-------ACCATATCTCT---G-ACACT--TT--T---CCG-A-T---------T-ATGCC---AG--T---TCA-A----------GTTC--------GA--------------G----------A-T----------A-G----TG----------------------A---TT--ATGTAtaagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|5 : agttaaatattgacA---CAT------------T-TTTGACTA-ATC-AAAGTGCCATAACTCTAAAG-ATAAT--GG--C---CCGTA-T---------T-G-GCCT--AGATT---TTATAGA-A------GTAC--------AA--------------A----------C-T---------------------------------------------TT--GTGTAA-GT-------tctacaatgtaagtccataactgcggctactagagtgcactcaaccaaaatttcatggacagacggcagacacacggtgattagaatagctcacgttaatgattgttccaaa
gi|5 : aacaattttagcatttttgactaattaaagggccataattctgaagattatggtcagaattggcttgttatcgaacttggctcagattttttagagatacacactttgtgtaagttggcttcagttcagataaagaatactatagtaattgagcggaaacggtaaatgttagcatttttgactaattaaagggccataactctaaagacaaatagtctgaattggctgagtattgaacttggcctagattttatagagatgcatactttgtgtatgtttgcttcagttctgataaagaataatctagttattgagtggaaacggtaaattttagaatttttgactaattaaagggccattactctaaagataatagtctgaattgactggttattgaacttggcctatatttcatagagattaacactttgtgtaagtttgcttcagtttgataaagaatactctagttattgagcagaaatgggcaatttta---CAT------------T-TTTGACTAATTA-AAGG-GCCATAATTCT-G-A-AGATTA-TGG-T---CAG-AAT---------T-G-GCT---TG--T---TAT-CGA-A--CTTGGCTC--------AG--------------A----------T-TTTTTAGAGATA-C----AC----------------------A---CTTTGTGTAA-GT-------TG-GCTTCAGTT-----CAG--A-TAAAG-A--------------ATACT-A---TAGTAATTG---AGCGGAAACG-GT-AAATGTTAGCATTTTTGACTA-ATTAAAGGG-CCATA-ACT------CTAA-AG-------ACAAATAG-TCT--------GAA-------TTGGCTG--AG-----TATT------------GAACTTG--------GCCTAG--ATTTT---AT-AGAGA---TG---C-A---T-ACTTTGTGTAT--GTT---TG-------CTTCAG---TTCTGA-T-A-----A----------AGA-AT---AA-T---C-T---A------GTTATTGAGT--G---GA---A-ACGGTAAATTTTA------G-AATTTTTGACTAATTAAAGG-GCCATTA-CT-----CT---AAA-------GA-TAATAGTC-------TGAA--------T-TGACT---GG-----T-T----A-TTGAA----------CTTGGCC-TATAT-TTCATAGAG-A---T---------TA-A--------C--ACTTTG----------------T---GTAA--GTT-----T-----GC------T------T-CA-G-----TTTGAT-----AAA------GA--ATACTCTAGTT----ATT----GAGCAGAAATGGGCAATTTTAACA-----------------TTTTT--GACTAATCAAAGTGCC-AT---AACTC---TAAAGAT--AATGG---CC-CGTATTG-G------------------------CCT-AG---A-----TT--TTATAGA---A-G---T--------ACA---A-ACT-T---T-GT---G-T--AA-GTTT-G------G-TTCAGT-T---C--C-----GATGA---AAA----ATA----C--Tttggttcagttccgatgaaaaatactctagttactgaacagaaacgataaacttgacgccacccata
gi|3 : aacaattttagGG-GTCATACCTC----AGACATT--TA--------A-A-T---------T-G-GTC---AG--TCAGTCG-AGATA--TT--TTAC--------AT--------------A----------TAT----------AAC----TA--------------------------CT--GTGTAAAGT--------T-GGTGAATAG-----CAA--A-TGAAA-ACTGC--------AGGTGCT-A---TAG----TG---CATATAA--C-TTCAAATAACGCAATTCTTGAC-A-ATTCAAATG-CCACA-ATTCAA--AC--A-AC-------ATT---TA-CCT--------GAT-------TTGACC---AG-----C-TC---------------CTT--------------------TT---AT-A---AGT-TA---T-A--------AC-------GGTT---TAT------A-TAAC---T----ACT-C-----A----------AAT-GA---TA-A---C-T---GCGA-GCGGAA--GAGT--G---CACTTA-AGATCATA----TA--G-CA-TATTTG-GA-TGATTC-AAGTGCCAGAA-CT-----CC---AAC-------AA-AAAT-ATT-------CGAT--------T-AAGCC---TG-----T-T--TAA----AA----------CCC-TCT-TGGAG-ATTTTG----A---T--------AT-------------TAT--TG----------------T---GTAA--GTT-----TGATTGAG------A------CTAA-A-----T----G-----AAA-ACTGAGA--GTG--CTAG------AAT----GCACACAC----TAA-----AATATAT----A--C-A---ATTTTT--GAC-GATTCAAGGGAC-AT---AACTC---CGACACT--AATAT---GC-TGATTTT-G-T-AGCT-CACG----AAGTT-G-TCC-AAGATA-----TTGATTATGGT---T-A---T--------ATA---A-CAA-T---T-GT---G-T--AA-GCTT-A------G-CGAAGA-T---C--A-----AATGA---AAA----CTG----C--TG---GTGCTAG--AGTGA----ACACAA--CTTCAAATA-AC--A-T-AAT-ATT-T-G-AC-G-CCGGGATAAATG--GCAAT-AACTCC---GG---CTTTA---ATT-A-TTCA----ATTGAGCC-AGT-TT-AAGAACCTGT-ctagttactgaacagaaacgataaacttgacgccacccata
gi|7 : TAAT--CA--T---CTG-A-T---------TTG-GCC---AG--G---TCA-AGA-AC-TT--ATCC--------CA--------------AGATATTATGGT-T----------A-CCGTATATT--------------------A---CT--GTGAAA-GT-------TT-GGAGAGGAT-----CAA--A-TGAAA-ATTGC--------GGGTACT-A---GAC----TG---CACCAAA--C-GTCAAATAGTTTAATTTT--------TTGAACGG-C--------------------C-------ATTAATTA-TCC--------AAT-------TTGGTC---AG-----T-TCA----------AGAACTTG--------TCCAAG--ATAGT---AT-G---G-G-TA---T-AT--T-ACTAT-TGTGTAAGTT---TG-------G-TAAGGATC----A-T-A-----AATAACAATTCAAT-AA---GA-A---C-TCTAATACTGTTCCA--CAG---G---TACATA-ccataatagcatattcattca
gi|4 : ttaccgtat-T---------T-G-GCT---AG--T---TTA-AAA-AACTT--GTCCC-------AAGATATG--------A----------T-T----------A-TA---TAGAA-------------------A---TG--GTGCAG-GT-------TT-GATGAAGAT-----CAA--AATGGAA-ACTGC--------AGGTGCA-A---GAA----TG---ACCAAAA--G-GTCAAGTGATGTAACAT----C-AGATTAAAGGA-CCATA-ACT-----CC--A-AC-------ATTAATAAATCC--------AAT-------TTGGCC---AG-----T-TCA----------AAA-CTTG--------TCCCAA--C-AT----ATGA---A-TATA---C-AG--C-A--AC-TGTGCAAGTT---TG-------A-TGAA---G----A-T-C-----A----------AAT-GA---AA-A---G-T---GCAG-GTGCTA--GAGT--G----AC-TATGCAACA------------CA-----------TGATTAAAAG-GC-------T-----GT---AAC-------A-----------------------------T-TGACC---AG-----C-T--CAA-G--AT----------TTCATTC-GAAAT-ATT----TT---------------TA-A--------C-TAC--TA----------------T---GTAA--GTT-----T-----GG------TGAGGATC-AA-A-----T----A-----AAG-AATGCAG--ATG--CTAG------AGT----ACACACAA--GGTTT-----A-TA-GT----A--C-A---ATTTTT--TAT-GTTTCAAGGGAC-AT---TACTC---TGAAATT--AATTA---TC-TAATTTG-G-CCAATT-CAAG----AACTT-G-TCT-GA---G-----AT-ATTGTTAT---T-A---T--------ATA---A-CTA-C---T-AT---G-C--AA-GTTC-A------G-TGAAGA-T---C--C-----AAAGA---AAA----ATG----C--------AGCTGG--AGTAC----ACACA-----CCAAAAA-GT--gtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|2 : gattcaaactaataatccctggattgatagactgatagctaat-C----CA----------------------A---CT--ATGCAT-GT-------TT-AGCAAAGGA-----CAA--A-TGAAA-TCTGCGAGAACCAAAGTCCG-A---TC-----TA---CATA----------AAACAAAGCAATATTTGA--A-TTTCAAGGG-CAATA-ACT-----CC--G-AC-------ATTTATTA-TCCAATATAATGAA-------CTGACCTACAG-----T-TTG----------ATAACTTG--------TCAAAG--ATATT---AT-G---G-T-TA---T-AT--A-ATTAC-TGTGTTCGTT---TGTGTTATGA-TGAT---G----A-T-ATGGTCA----------AAT-GA---AACA---A-T---ATAG-GTGCT---GAGC--G---CTCATA-ACTTCAAAT---AG--CGCA-A-TCTTTGA-CAATGC-AAGTGTCATAA-CTCCAAAAT---AACTATTTAAAA-TAATTATCAAAAATTTAAT--------T-TATCC---AAAATTAT-T--TAT-T--AAGTTTTTAAGACTTGTCC-GAGAA-ATTAGGGTT-A---T--------ATA-AGAAGTGTGCACAC--TT----------------G---ATGG--A-------------AA------T------A-AG-A-----T----G-----ACA-ACTGCCA--GTG--CTAG------AGT----GCACAAAA--CATCA-----AATGCAT----G--C-A---ATTTTC--GAC-GATTCAAAAGCC-AT---GACTC---AGACATT--AATTA---TC-ATATTTG-G-TCGGTG-AAAG----A-----------------------T-ATT---GT---C---------------TA---A-GAA------------A-T--TA-GTTA-G------G-CGAATA-T---C--A-----AA-------AC----A-G----C--GG---GTGCTGA--AGTGC----ACACAG--CGCCAAATA-AA--A-C-AATATTT-G-A-TG-A-T-----TCAAGT--GACTT-AATTCC---GA---CATTA---A-T-T-ATCA---CAAATGGTC-AGT-TT-AAGAACTTGT-CAAAAG-T-------A-TAAT----GG--TT-G---TA-----TA-----CTCACTATGTATGTATGTTAGAT----GATGA-TCAAATGAAAA-A--TGT---AGATGCTAG--AAT--CCACACAAC-ACCAAA-TGG-A-G----CA---ATTTTT-AACGGTTC------AAAGGCCATT-ACTCTGGCATTAATTATC-CATTTTG-TCC---A-GT-TCAGGAACTT-TTCC-GAGAT-ATT----A-TG--------GTTA---T---A-----TA---A-ttatagatggtagacaacaggtgattagactagcccacctttaactttgaacaccttagaatggcattaatta
gi|8 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggT--ATATAA-AT-------ATTGTCTAAGAC-----TAACCA-TGG-----T-C--------AAATGCTTA---CA-----TGAGCTATTCAA--GTGCTAAATG-TATTTTTTTTATT-A-ATTCAAGGT-CAATA-ACT------C--AGAC-------ATTTATTT-TCC--------GGT-------CTAGTG---AG-----T-TAA----------AAAACCTA---------TCTAGA-CTCTT---AA-A---G-T-TA---T-ATGATAACTGG-TGTATAAGTT---CG-------GCTGAT---A----A-T-A-----AAC--------AAT-GATTGAA-A---------ACAA-ATACCA--GACT--A---CACACA-TTTACAAA----AA--
gi|6 : aCAAATAAGGTAATTTTTGGT-A-ATATAAG-------A-ACC-----GA--A-AC-------A-TAGACA-TTC--------G---------TTGTCA---AA-----T-TTT----------AA---TTG--------CTCAAG--ACAAG---AT-C---T-T-TAAGGC-A-----GCTAC-AATGTCTGGT---TG-------A-TGAA---G----A-T-C-----C----------AATGAA---AA-A---CGT---GAAA-GTG--A--GAGA--G---AACACA-ACATCAAAC---AG--GGCA---TTTTTTA-TGAATCAATG-GCCATAA-CC-----CT---AGC-------AT-TATTTATA-------TGAT--------T-TTGCC---TG-----C-T--CAA-G--AA----------CTAGTCC-AAGATTATTATGGTT-A---TCAGTTTATATA-AA-------C-TAC--TG----------------T---GTAA--GTT-----T-----GG------T------G-GG-GATCCTT----TG----AAA-ACTGTGG--ATG--CTAA------ATT----AGACACAC--AGTCA-----AATA-AC----A--C-A---ATTT----AAT-AAATCAAAGGTC-GTA--TATCC-----ACA-------TA---AA-TGATTTG-G-AGAGTT-CAAG----AACTT-G-TCT-GA----------T-ATTTTGGTAATT-A---T--------ATA---A-C----------------T--A--GTTT-G------G-TAAAGA-T---C--C-----AATAA---AAA----ATG----C--AG---ATGCTAG--A--GC----ACACAA--gggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|5 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacATTTTTGACTA-ATTAAAGGG-CCATA-ATT------CTGA-AG-------ATTA-TGG-TCA--------GAA-------TTGGCT---TG-----T-TAT----------CGAACTTG--------GCTCAGATTTTTT---AG-A---G-A-TA---C-AC----ACT-T-TGTGTAAGTTGGCT----------TCAG---T------T-C-----A----------GAT-AA---AG-AATAC-T---ATA--GTAATT--GAGC--G---GA---A-ACGGTAAA----TGTTAGCA---TTTTTGACTAATTAAAGG-GCCATAA-CT-----CTAAAGAC-------AAATAGT---C-------TGAA--------T-TGGCTG--AG-----TAT--TGA-----A----------CTTGGCC-TAGAT-TTTATAGAG-A---T--------GCATA--------C-T-T--TG----------------T---GTAT--GTT-----T-----GC------T------T-CA-G-----T----TCTGATAAA-G-----A--ATAATCTAGTTATTGAGT----GGAAAC----GGT-A-----AATT-TT----A--G-A---ATTTTT--GACTAATTAAAGGGCC-AT---TACTCTAAAGATAAT--AGT------C-TGAATTG-A-CTGGTT-ATTG----AACTTGG-CCT-AT---A-----TT--TCATAGA---G-A---T---------TA---A-CACTT---T-GT---G-T--AA-GTTT-G------C-T------T---C--AGTTT-GATAA---AGA----ATA----C--T-------CTAGTTATTGA----GCAGAAATGGGCAATTT-TA--A-C-ATT-TTT-G-A-CT-A-A-----TCAAAGT-GCCAT-AACTCaacgaaggttaac
gi|7 : aacaattttagcTT-----AC--C-GT-------ATTAATCA-TCT--------GAT-------TTGGCC---AG-----G-TCA----------AGAACTTAT-------CCCAAG--ATATT---AT-G---G-T-TA---CCGTA-T-ATTAC-TGTGAAAGTT---TG-------G-AGAG---G----A-T-C-----A----------AAT-GA---AA-A---T-T---GCGG-GTACTA--GACT--G---CACCAA-ACGTCAAA----TA--GTTT-AATTTTT---TGA----ACG-GCCATTA----------------------------ATTATC-------CAAT--------T-TGGTC---AG-----T-T--CAA-G--AA----------CTTGTCC-AAGAT-AGTATGGGT-A---T--------ATT-A--------C-TAT--TG----------------T---GTAA--GTT-----T-----GG------T------taaagataatggcccgtattggcctagattttatagaagtacaaactttgtgtaagtttggttcagttccgatgaaaaatactctagttactgaacagaaacgataaacttgacgccacccata
gi|12 : --------GAA-------TAGGCC---AG-----T-TAA----------AACACTTGTTAAGATCTCCTGG--TTAAT---AT-A---A-C-TA---aaggatcataaataacaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|3 : ttcaacaaaaaaaaatgtAA-------TTGGTC---AG-----T--CA----------G----TCG------------AG--ATATT---TT-A---C-A-TA---T-AT--A-ACTAC-TGTGTAAAGT---TG-------G-TGAA---T----A-G-C-----A----------AAT-GA---AA-A---C-T---GCAG-GTGCTA--TAGT--G---CATATA-ACTTCAAAT---AA--CGCA-A-TTCTTGA-CAATTCAAAT-GCCACAA-TT-----CA---AAC-------AA-CATTTACC-------TGAT--------T-TGACC---AG-----C-T--C------------------CTTTTAT-AAGTT-ATAACGGTTTA---T--------ATA-A--------C-TAC--T--------------------------------------------------------C-AA-A-----T----G-----ATA-ACTGCGA--GCG--GAAG------AGT----GCACTTAA--GATCA-----TATA-------G--C-A---TATTTG--GAT-GATTCAAGTGCC-AG---AACTC---CAACAA---AAATA---TT-CGATTAA-G-CCTGTT-TAAA----ACCCT-C-TTG-GA---G--------ATTTTG-------A---T--------AT-------TA-T---T-GT---G-T--AA-GTTT-G------ATTGAGAC-T------A-----AATGA---AAA----CTG----A--GA---GTGCTAG--AATGC----ACACA----CTAAAATATAT--A-C-AAT-TTT-TGA-CG-A-T-----TCAAGG--GACAT-AACTCC---GA---CACTA---A-T-A-TGCT---GATTTTG-T-AGC-TC-ACGAAGTTGT-CCAAGA-TATTG---A-TTAT----GG--TT-A---TA-----TA-----ACAAT----TGTGTAAGCTTAGC----GAAGA-TCAAATGAAAA-C--TGC---TGGTGCTAG--AGT--GAACACAAC-TTCAAA-TAA-C-A----TA---ATATTT-GACG--CCGGGATAAATGGCAATA-ACTCCGGCTTTAATTATT-CAATTGA-GCC---A-GT-TTAAGAACCT-GTCC-ATAAT-AGC----A-TA--------TTCA---T---atgttacagtttgatcaagtttcaataaatcagcagttcatatggtgcacacactttataaattaacggacagatggtggacaataaacggggaacgcaagacgatcaaataagtgacttttagttt
gi|2 : gggtcatacctcagacattta-----A----------AAT-GA---AA-T---C-T---GCGA-GAACCA--AAGTCCGATCTACATA-A-AACAAA----GC--AATA-----TTTGA---ATTTCAAG-GGCAATAACT-----CC---GAC-------AT-TTATTATC-------CAATATAATGAAC-TGACCTACAG-----T-T--TGA-T--AA----------CTTGTCA-AAGAT-ATTATGGTT-A---T--------ATA-A--------T-TAC--TGTGTTCGTTTGTGTTATG---ATGATGATA-----T-----GG------T------C-AA-A-----T----G-----AAACAATATAG--GTG--CT-G------AGC----GCTCATAA--CTTCA-----AATA-GC----G--C-A---ATCTTT--GAC-AATGCAAGTGTC-AT---AACTC---CAA-AAT--AACTA---TT-TAAAATA-A-TTA-TC-AAAAATTTAATTT-A-TCC-AA---AATTATTT-ATTA-AGT---T-----T--------TTA---A-GAC-T---T-GTCCGA-G--AA-ATTA-GGGTTATA-TAAGAAGTGTGC--ACACTTGATGG---AAATAAGATGACAAC--TGCCAGTGCTAG--AGTGC----ACAAAA--CATCAAATGCAT--G-C-AAT-TTT-CGA-CG-A-T-----TCAAAA--GCCAT-GACTCA---GA---CATTA---A-T-T-ATCA---TATTTGGTC-GGT-GA-AAGATATTGT-CTAAGA----------------------------------------------AATTA---GT-TA-----GGC----GAATA-TCA---AAACA-G--CGG---G--TGCTGA--AGT--GCACACAGC-GCCAAA-TAA-A-A----CA---ATATTT-GATGATTC------AAGTGACTTA-ATTCCGACATTAATTATCACAA-ATG-GTC---A-GT-TTAAGAACTT-GTCA-AAAGT-ATA----A-TG--------GTTG---T---A-----TACTCA-CTATG-TATGTATGTTAGA-TGATGAT---CAA-A------TGA-A-AAAT-GTAGAT-GCT--AG--AA----TCCACACAAC--ACCAAATG-G-AGCA----------ATTTTT-AACGGT----TCAAAGGCCATT-A---CTCTG---GCA--TTAATTATCC-ATTTTGTCCAGTTCAGGAACTTTTCC-GAGAT----ATTATGGTTA-TATAtca
gi|11 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggccaactatgcatgtttagcaaaggacATTTTTGA-TGTTACCA-----TAT---CT-----CT---GAC-------AC-T--TT-TC-------CGAT--------TATG-CC---AG-----T-T--C------AA----------GTT---C-GAGAT-A--GTGATT-A---T--------GTA-T--------C-TAC--AA----------------T---GTAA--GTC-----C-----A------------------------------T-----AA---CTGCGG--CTA--CTAG------AGT----GCACTCAA----CCA-----AAa
gi|5 : agttaaatattgacgagttatatATTTTTGACTAATTAAAGG-GCCATAA-TT-----CT---GAA-------GA-TTATGGTC-------AGAA--------T-TGGCT---TG-----T-TATCGA-----A----------CTTGGCT-CAGAT-TTTTTAGAG-A---T--------ACACA--------C-T-T--TG----------------T---GTAA--GTTGGCTTC-----AG------TT-----C-AG-A-----T----------AAA-G-----A--ATA--CTAT------AGTAATTGAGCGGAAACGGT-A-----AATG-TTA---G--C-A---TTTTT---GACTAATTAAAGGGCC-AT---AACTCTAAAGACA----AATAG---TC-TGAATTG-GCTGAGT--ATTG----AACTT-GGCCT-AG---A-----TT--TTATAGA---G-A---T--------GCAT--A-CT--T---T-GT---G-T--AT-GTTT-G------C-TTCAGT-T---C--T-----GATAA---AGA----ATAAT--C--TA---GTTATTG--AGTGG----AAAC----GGT-AAATT-TT--A-G-AAT-TTT-TGA-CT-AAT-----TAAAGG--GCCAT-TACTCT---AA---AGATA---A-T-A-GTCT---GAATTGACT-GGT-TA-TTGAACTTG-----------------GCCTAT----AT--TTCA---TAGAGATTA-----ACACTT---TGTGTAAGTTTGCT----TCAGT-TTG-ATAAAGA-A--T------ACT-CTAGTTATTGAGCAGAAATG-GGCAAT-TTT-A-A----CA---TTTTTG-ACTAATCA------AAGTGCCATA-ACTCTAAAGATAATGGCC-CGTATTG-GCCTAGA-TT-TTAatttcatggacagacggcagacacacggtgattagaatagctcacgttaatgattgttccaaa
gi|8 : aacaattttagcTTTTTTA-TTAATTCAAG-GTCAATAACT-----CA---GAC-------AT-TTATTTTC-------CGGT--------C-TAGTG---AG-----T-T--AAA-A--AA----------CCTATCT-AGACT-CTTAAAGTT-A---T--------ATG-A--------T-AAC--TG----------------GTGTATAA--GTT-----C-----GG------C------T-GATA-----A----T-----AAA--CAATGA--TTG----AA------AAC----AAATACCA--GACTA-----CACA----------C-A---TTT------AC-AA--AAAGGGCC-AT---AACtagaagtacaaactttgtgtaagtttggttcagttccgatgaaaaatactctagttactgaacagaaacgataaacttgacgccacccata
gi|7 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaaatgtattTTA-CC-----GT-------------AT-TAATCATC-------TGAT--------T-TGGCC---AG-----G-T--CAA-G--AA----------CTTATCCCAAGAT-ATTATGGTT-ACCGT--------ATA----------T-TAC--TGT---------------G---A-AA--GTT-----T-----GGAGAGGAT------C-AA-A-----T----G-----AAA-ATTGCGG--GTA--CTAG------ACT----GCACCAAA--CGTCA-----AATA-GT----T--TAA---TTTTTT--G--------AACGGCC-AT-----------------T--AATTA---TC-CAATTTG-G-TCAGTT-CAAG----AACTT-G-TCC-AA---G-----AT-AGTATGGG---T-A---T--------ATT---A-CTA-T---T-GT---G-T--AA-GTTT-G------G-TAAGGA-T---CATA-----AATAA---CAA----gcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : T---GAC-------AT-TTTTTATC-------TGAT--------T-TGTGA---AG-----T-T--CGAAG--AA----------C--ATTT-GAGAT-CTTATTGTT-A---T--------TTA-A--------C-TAC--TA----------------C---CTTA--GTT-----T-----GG------------------------T----T-----AAA-G-TGCAG--ATG--CCAA------AAT----GCACTTAA--GTCCA-----AACG-AT----GCTC-ATATTTTTTT--AAT-GATTCTGGGTTC-ATAAATAATC------CAGT----TT---------GGCTA-G-TC--TT---AG----TACTT-G-AC--------------------TGCT---T-A---T--------ATA---A--AT-T---CTCT---G-T--AA-GTTT-G------G-TCAAGA-T---T--C-----AGTGA---AAA----ATG----C--Tttcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|18 : tcTTATC-------GGAT--------G-TGGCC---AA-----T-T--CAA-T--AA----------CTTATTC-AAGGT-ATTATTGTT-A---T--------aacaaccacgacattgcagcaaacaag
gi|3 : C-GAGAT-ATTTTACAT-A---T--------ATA-A--------C-TAC--TG----------------T---GTAA--AGT-----T-----GG------TGAATAGC-AA-A-----T----G-----AAA-ACTGCAG--GTG--CTAT------AGT----GCATATAA--CTTCA-----AATA-AC----G--C-A---ATTCTT--GAC-AATTCAAATGCC-AC---AATTC---AAACAAC--ATTTA---CC-TGATTTG-A-CCAGCT-C---------CTT-T-TAT-AA---G-----TT-ATAACGGT---TTA---T--------ATA---A-C----------T---A-C--------------------------T---C--A-----AATGA---TAA----CTG----C--GA---GCGGAAG--AGTGC----ACTTAA--GATCATATA-GC--A-T-A-T-TTG-G-A-TG-A-T-----TCAAGT--GCCAG-AACTCC---AA---CAAAA---A-T-A-TTC----GATTAAGCC-TGT-TT-AAAACCCTCT-TGGAGA-T---------------------TT------------TG-----ATA-TTAT-TGTGTAAGTTTGAT----TGAGA-CTAAATGAAAA-C--TGA---GAGTGCTAG--AAT--GCACACAC---TAAAA-TATAT-A----CA---ATTTTT-GACGATTC------AAGGGACATA-ACTCCGACACTAATATGC-TGATTTT-GT----A-GC-TCACGAAGTT-GTCC-AAGAT-ATTGATTA-TG--------GTTA---T---A-----TA---A-CAAT--TGTGTAAGCTTAG-CGAAGAT---CAA-A------TGA-A-AACTGCTG-GT-GCT--AG--AG----TGAACACAAC--TTCAAATA-A-CATA----------ATATTTGA-CGCCGGGATAAATGGCAATA-A---CTCCG---GCT--TTAATTATTC-AATTGAGCCAGTTTAAGAACCTGTCC-ATAAT----AGCAT
gi|6 : gggtcatacctcagacatttaaattggtcagtcagt------T------C-CA-A-----T----G-----AAA-AACGTGAAAGTG----AG------AGA----GAACACAA--CATCA-----AACA-GG----G--C-A---TTTTTT---AT-GAATCAATGGCC-AT---AACCC---TAGCATT--ATTTA---TA-TGATTTT-G-CCTGCT-CAAG----AACTA-G-TCC-AAG--A-----TT-ATTATGGT---T-A---TCAGTTTATATA---AACTA-C---T-GT---G-T--AA-GTTT-G------G-TGGGGA-T---C--C-----TTTGA---AAA----CTG----T--GG---ATGCTAA--ATTAG----ACACAC--AGTCAAATA-AC--A-C-AA--TTT-A-A-TA-A-A-----TCAAAG--GTCGTATA-TCC----A---CATAA---A-T----------GATTTGGAG-AGT-TC-AAGAACTTGT-CTGATA-T-------T-TTG-----GTAATT-A---TA-----TA-----------AC-T-----AGTTTGGT----AAAGA-TCCAATAAAAA-A--TGC---AGATGCTAG--A----GCACACAAattcattca
gi|5 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaaga-----AACA-ATTTTAG--C-A---TT-TTT--GACTAATTAAAGGGCC-AT---AATTC---TGA-AG----ATTATGGTC-AGAATTG-G-CTTGTT-ATCG----AACTT-G-GCTCAG---A-----TT--TTTTAG------A---G--------ATAC--A-CACTT---T-GT---G-T--AA-GTTG-G------C-TTCAGT-T---C--A-----GATAA---AGA----ATA----CTATA---GTAATTG--AGCGG----AAAC----GGT-AAAT--GTTAG-C-ATT-TTT-G-A-CTAA-T-----TAAAGG--GCCAT-AACTCTAAAGA---CA--A---A-T-A-GTCT---GAATTGGCTGAGTATT---GAACTTGG-CCTAGA-T------------------T--TT-A---TA-----GAGATGCATACTT---TGTGTATGTTTGCT----TCAGT-TCTGATAAAGA-A--TAATCTAGTTATT-G--AGT--GGAAAC--G-GT-AAA-TTT-TAG----AA---TTTTTG-ACTAATTA------AAGGGCCATT-ACTCTAAAGATAATAGTC-TGAATTG-ACTG--G-TTATTG--AACTTGGCCT----AT-ATT-----------------TCA---T---AGAGATTA---A-C-ACTTTGTGTAAGTTTGC-T-----T---CAGTT------TGATA-AA-----GAAT-ACT--CT--AGTTATTGAGCAGAAATGGGC-AATT-T-TA-AC---------ATTTTTGACTAAT----CAAAGTGCCATA-A---CTC-----------TAAAGATAA-----TGGCCCGT--A-----TTGGCC-TAGAT----TTTATAG--A-AGTACA--A-A--CTTTGTGTA-AGTTTGGTTCAGTTC--CGATGAAAAAT--A----CTCTAG-TTACTGA-AC--AG---A-AACG----A----TA-AAaacgaaggttaac
gi|8 : A-AT----G--T-A---TTTTTTTTATT-AATTCAA-GGTCAAT---AACTC---AGACATT--TATTT---TC-CGGTCTA-G-TGAGTT-AAAA----AACCT-A-TCT-AG---A-----CT-CTTAAAGT---T-A---T--------ATG---A-TAA-CTGGT-GT---A-T--AA-GTTC-G------GCTGATAA-T---A--AAC---AATGATTGAAA----A------C--AA---ATACCAG--ACTAC----ACACActtgacgccacccata
gi|10 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCATGGGCC-AT---GACTC---AGTCTGG--AAT-A---AC-CAGGTCAAG-TCAGTT-AAAT----AACTT-A-CCC-AA---G------T-AGTACAGC---T-----T---------TA---A-TAG-T---T-AT---GTT--AATGCTTGG------A-TAATAT-T---C--T-----ACAGA---AAC----CT-----C--AG---GTACTAG--AATGTGTCAACACAA--tttacaaaaagggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|3 : GGGTC-AT---ACCTC---AGACATTTAAATTG---------GTCA-G-TCAGTC-GA-G----A---T-A-TTT-----------------TACA-----T-A---T--------ATA---A-CTA-C---T-GT---G-T--AA-AGTT-G------G-TGAATA-G---C--A-----AATGA---AAA----CTG----C--AG---GTGCTAT--AGTGC----ATATAA--CTTCAAATA-AC--G-C-AAT-TCT-TGA-CA-A-T-----TCAAAT--GCCAC-AATTCA---AA---CA------A-C-A-TTTACCTGATTTGACC-AGC-TC------CTTTT-ATAAG------------TTATAACGGT--TT-A---TA-----TA-----AC---TAC-T---CAAAT------------GA-TAAC-TG--------CGA---G--CGGAAG--AGT--GCACTTAAG-ATCATA-TA----G----CA---TATTTG-GATGATTC------AAGTGCCAGA-ACTCCAACAAAAATA-TT-CGATTAA-GCC---T-GT-TTAA-AACCC--TCT-TGGAG-ATT----T-TG-----------A---T---A-----T-------TAT--TGTGTAAGTTTGA-TTGAGAC---TAA-A------TGA-A-AACT-GAGAGT-GCT--AG--AA----TGCACACAC----TAAAATATA-TACA----------ATTTTTG-ACGAT----TCAAGGGACATA-A---CTCCG---ACA--CTAAT-ATGCTGATTTTG-TAGCTCACGAAGTTGTCC-AAGATATTGATTATGGTTA-TATA-A--C-A---ATTGTGTA-AGCTTAGCGAAGATC--AAATGAAAACT--G----C---TG-GTGC--T-AG--AGTGAA-CACA----A----C-------TT--CAAATAACA-TAATATTTGAC----G-CCGG--GAT---AA-ATGGC---AATAACTCCGGCTTTAA------TTATTCAATTGAGCCAGTTTAAGAACCTGTCCA-TAATAGCATATTCATTCAaagttgaagacagacaagtaactgacacgaccacaaaagctcacatttgtatagaaatgatactaaaa
gi|7 : T--AATCA---TC-TGATTTG-G-CCAGGT-CAAG----AACTT-A-TCCCAA---G-----AT-ATTATGGT---T-ACCGT--------ATA---T-TAC-T-----GT---G-A--AA-GTTT-G------G-AGAGGA-T---C--A-----AATGA---AAA----TTG----C--GG---GTACTAG--ACTGC----ACCAAA--CGTCAAATA-GT--T-T-AAT-TTT-----TT-G---------AACG--GCCAT-TA-------------AT-------T-A-TCCA----ATTTGGTC-AGT-TC-AAGAACTTGT-CCAAGA-T-------A-GTAT----GG--GT-A---TA-----T-------T-ACTAT-TGTGTAAGTTTGGT----AAGGA-TCATA
gi|4 : ttaccgtatCAGCT-CAAG----ATTTC-A-TTC-GA---A-----AT-ATT----T---T---------------TA---A-CTA-C---T-AT---G-T--AA-GTTT-G------G-TGAGGA-T---C--A-----AATAA---AGA----ATG----C--AG---ATGCTAG--AGTAC----ACACAA--GGTTTA-TA-GT--A-C-AAT-TTT-TTA-TG-T-T-----TCAAGG--GACAT-TACTCT---GA---AATTA---A-TTA-TCTA----ATTTGGCC-AAT-TC-AAGAACTTGT-CTGAGA-T-------A-TTGT----TA--TT-A---T-------------ATAACTAC-TATGCAAGTTCAGT----GAAGA-TC-CA--AAGA-A--AAA---TGCAGCTGG--AGT--ACACACAaataacaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|9 : gattcaaactaataatccctggattgatagactgatagctaatttggctagtttaaaaaacttgtcccaagatatgattatatagaaatggtgcaggtttgatgaagatcaaaatggaaactgcaggtgcaagaatgaccaaaaggtcaagtgatgtaacatcagattaaaggaccataactccaacattaataaatccaatttggccagttcaaaacttgtcccaacatatgaatatacagcaactgtgcaagtttgatgaagatcaaatgaaaagtgcaggtgctagagtgactatgcaacacatgattaaaaggctgtaacattgacAGTTCGAAG----AAC---A-TTT-GA---G-----AT-CTTATTGT---T-A---T--------TTA---A-CTA-C---T-AC---C-T--TA-GTTT-G------G-T---------------------T-----AAA----GTG----C--AG---ATGCCAA--AATGC----ACTTAA--GTCCAAACG-AT--G-C-----TCA-T-A-TT-T-T-----TTTA-------AT-GATTCT---GGGTTCATAA---A-T-AATCCA---G-TTTGGCT-AGT-CT-TAGTACTTG-------A-C------------T----GC--TT-A---TA-----TA-----A--ATT-C-TCTGTAAGTTTGGT----CAAGATTCA-GTGAAAA-A--TGccaaaaagtttatagatggtagacaacaggtgattagactagcccacctttaactttgaacaccttagaatggcattaatta
gi|6 : tctgacattttttatctgatttgtgaTT-G------A-TGAAGA-T---C--C-----AATGA---AAA----ACG-------TGAAAGTG--AG--AGAGA----ACACAA--CATCAAACA-GG--G-C-ATT-TTT-T-A-TG-A-A-----TCAATG--GCCAT-AACCCT---AG---CATTATTTA-T-A-T------GATTTTGCC-TGC-TC-AAGAACTAGT-CCAAGA-TTATTATGG-TTATCA--GT--TT-A---TA-----TA-----A--ACTAC-TGTGTAAGTTTGGT----GGGGA-TCCTTTGAAAA-C--TGT---GGATGCTAA--ATT--AGACACACA-GTCAAA-TAA-C-A----CA---ATTT---AATAAATC------AAAGGTCGTATATCC--ACATAAAT------GATTTG-GAG---A-GT-TCAAGAACTT-GTCT-GATAT-TTT----GGTA--------ATTA---T---A-----TA---A-CT----------AGTTTGG-TAAAGAT---CCA-A------TAA-A-AAAT-GCAGAT-GCT--AG--A------GCACACAAA--ctaacaaccacgacattgcagcaaacaag
gi|11 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggGTTAAATA-TT--GACGAGT-TATAT-A-TT---T-----TTGATGTTACCAT-ATCTCT---GA---CACT------T---TTCC---GATTATGCC-AGT-TC-AA------GT-TCGAGA-T-------A---GT----GA--TT-A---TG-----T------AT--CTAC-AATGTAAGTCacgaaggttaac
gi|8 : aT-TTT-T-A-TT-AAT-----TCAAGG--TCAAT-AACTCA---GA---CATTT---A-T-T-TTCC---GGTCTAGTG-AGT-TA-AAAAACCTAT-CT-AGACT-------C-TTAA----AG--TT-A---TA-----TG-----ATAACTGG-TGTATAAGTTCGGC----TGATA-----ATAAACA-A--T-------------G--ATT--GAAAACAAATACCAGACTACAC-A----CA---TTTACA-AA------------AAGGGCCATA-ACGC-----TT-AT-GTC-TGATTTG------------TTGAGAAGTT-GCCC-AAGA--AT------------------CTA---T---A-----TA---T-CTCA--TGCGTACGCTC-G-T---AATTTACAA--------TGA-A-AAAT-CAGAGT-GCTTAATAGAG----TACACACAAcataactgcggctactagagtgcactcaaccaaaatttcatggacagacggcagacacacggtgattagaatagctcacgttaatgattgttccaaa
gi|19 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaaatgtattt-----TCAAGG--GACAT-TACTCT---G-----ATTA---A-T-T-TT
gi|9 : TCT---GA---CATTT---T-T-T-ATCT---GATTTGTGA-AGT-TCGAAGAAC--AT-TTGAGA-T-------C-TTAT----TG--TT-A---T------T-------TAACTAC-TACCTTAGTTTGGT---------------TAAAG-----TGC---AGATGCCAA--AAT--GCACTTAAG-TCCAAA-CGA-T-GCTCATA---TTTTTTTAATGATTC------TGGGTTCATA------------AATAATC-CAGTTTG-GCT---AGTC-TTAGT-ACTT-GAC-----------------TG--------CTTA---T---A-----TA---A-ATTC--TCTGTAAGTTTGG-TCAAGAT---TCA-G------TGA-A-AAatctgatatggctgatt
gi|7 : ATTA---A-T-C-ATCT---GATTTGGCC-AGG-TC-AAGAACTTATCCCAAGA-T-------A-TTAT----GG--TT-ACCGTA-----T---------ATTAC-TGTGAAAGTTTGGA----GAGGA-TCAAATGAAAA-T--TGC---GGGTACTAG--ACT--GCACCAAAC-GTCAAA-TAG-T-T----TA---ATTTTT---TG----------AA------------CGGCCATTAATTATC-CAATTTG-GTC---A-GT-TCAAGAACTT-GTCC-AAGAT-AGT----A-TG--------GGTA---T---A-----TT---A-CTAT--TGTGTAAGTTTGG-TAAGGAT---CAatgctaacaaccacgacattgcagcaaacaag
gi|4 : ttaccgtTTGACC-AGC-TC-AAGATTTCAT-TCGAAA-T-------A-TT----------TT--------------------TAACTAC-TATGTAAGTTTGGT----GAGGA-TCAAATAAAGA-A--TGC---AGATGCTAG--AGT--ACACACAAG-GTT----TAT-A-G----TACAATTTTTT-A-TGTTTC------AAGGGACATT-ACTCTGAAATTAATTATC-TAATTTG-GCC---A-AT-TCAAGAACTT-GTCT-GAGAT-ATT----G-TT--------ATTA---T---A-----TA---A-CTAC--TATGCAAGTTCAG-TGAAGAT---CCA-A------AGA-A-AAAT-----GCAGCT--GG--AG----TACACACA-----CCAAAAA-G-Ttaaataacaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : gattcaaactaataatccctggattgatagactgatagctaatttggctagtttaaaaaacttgtcccaagatatgattatatagaaatggtgcaggtttgatgaagatcaaaatggaaactgcaggtgcaagaatgaccaaaaggtcaagtgatgtaacatcagattaaaggaccataactccaacattaataaatccaatttggccagttcaaaacttgtcccaacatatgaatatacagcaactgtgcaagtttgatgaagatcaaatgaaaagtgcaggtgctagagtgactatgcaacacatgattaaaaggctgtaaca-A---TA-----TA------TAAATAT-TGTCTAAGACTAAC----CATGG-TCAAATGCTTACA--TGA---G----CTA----TT-------CAAGTGCTAAA-TGT---A----TT---TTTTTT-ATTAATTC------AAGGTCAATA-ACTCAGACATTTATTTTC-CGGTCTA-GTG---A-GT-TAAAAAACCT-ATCT-AGACT-CTT----A-AA--------GTTA---TATGA-----TA---A-CTGG--TGTATAAGTTCGGCTGATAAT---AAA-CAATGATTGA-A-AA----CAAAT-ACC--AG--AC----TACACAC------------------------------ATTTACAAA----------AAGGGCCATA-ACGCTTATG---TC---T----------GATTTG------TTGAGAAGTTGCCC-AAGA-----ATC-----TA-TATATC--TCA--TGC---GTA-CGCTC-GT---AATTTACAATGAAAAAT-------C---AGAGTGCTTA-ATAGAGTACA-CACA----A----ttatagatggtagacaacaggtgattagactagcccacctttaactttgaacaccttagaatggcattaatta
gi|6 : GTCTGGTTGATGAAGA-TCCAATGAAAA-ACGTGA---AAGTGAGAG--A----GAACACAAC-ATCAAA-CAG-G-G----CA---TTTTTT-A-TGAATC------AATGGCCATA-ACCCTAGCATTATTTATA-TGATTTT-GCC---T-GC-TCAAGAACTA-GTCC-AAGATTATT----A-TGGTTATCAGTTTA---T---A-----TA---AACTAC--TGTGTAAGTTTGG-TGGGGAT---CCT-T------TGA-A-AACT-GTGGAT-GCT--AA--AT----TAGACACACA--GTCAAATA-A-CACA----------ATTT---AATAAA----TCAAAGGTCGTATA---TCC-----ACA--TAAAT------GATTTGGAGAGTTCAAGAACTTGTCT---GAT----ATTTTGGTAA-T-TATA--T-A---ACT------AGTTTGGTAAAGATC--CAATAAAAAAT--G----C---AG-ATGC-----T--AGAGCA-CACA----A----AACGAAGGTTAAC
gi|9 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatTCTGACATTTTTTATC-TGATTTGTGAA---G-TT-CGAAGAAC---ATTT-GAGAT-CTT----A-TT--------GTTA---T---T-----TA---A-CTAC--T-----ACCTTAG-TTTGGTT---AAA-G------TGC-A-GAT---------GCC--AA--AA----TGCACTTAAG--TCCAAACG-A-TG-CTC--------ATATTT-----TT----TTAA------TG-A---TTCTGGGTTCA--TAAATAATCC-AGTTTGGCTAGTCTTAGTACTTGAC---------------TGCTTA-TATAAA--T----T-CTCTGTA-AGTTTGGTCAAGATT--CAGTGAAAAAT--GCTAAC---AA-CCAC--G-AC--ATTGCAGCA-A----A----CA-A
gi|7 : ATTAATCATC-TGATTTG-GCC---A-GG-TCAAGAACTT-ATCCCAAGAT-ATT----A-TG--------GTTACCGT---A-----TA-----TTAC--TGTGAAAGTTTGG-AGAGGAT---CAA-A------TGA-A-AATT-GCGGGT-ACT--AG--AC----TGCAC-CAAAC-GTCAAATA-GTTT-A----------ATTTTT---TG--------AACGGC------------------CA--TTAATTATCC-AATTTGGTCAGTTCAAGAACTTGTCC-AAGAT----AGTATGGGTA-TAT-TA--C----TATTGTGTA-AGTTTGGTAAGGATg
gi|4 : ttaccgtTTG-ACC---A-GC-TCAAGATTTC-ATTC-GAAAT-ATT-----------------TT--------------TA---A-CTAC--TATGTAAGTTTGG-TGAGGAT---CAA-A------TAA-AGAATG-CAGA-T-GCT--AG--AG----TACACACAAG--GTTTA-TA-G-TACA----------ATTTTTTA-TGTT----TCAAGGGACATT-A---CTCTG---AAA--TTAATTATCT-AATTTGGCCAATTCAAGAACTTGTCT-GAGAT----ATT---GTTA-T-TATA--T-AACTACTATGCA-AGTTCAGTGAAGATC--CAAAGAAAAAT--G----C---AG-CTG------G--AGTACA-CACA----C----CA-AAAAGTTTATAGAT--------------------G-GTAGACAAC---AG-GTGATTAGACTAGCCC--ACCTTTAAC---TTTGcataaataacaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|11 : gattcaaactaataatccctggattgatagactgatagctaatttggctagtttaaaaaacttgtcccaagatatgattatatagaaatggtgcaggtttgatgaagatcaaaatggaaactgcaggtgcaagaatgaccaaaaggtcaagtgatgtaacatcagattaaaggaccataactccaacattaataaatccaatttggccagttcaaaacttgtcccaacatatgaatatacagcaactgtgcaagtttgatgaagatcaaatgaaaagtgcaggtgctagagtgactatgcaacacatgattaaaaggctgtaacaA--GTTAAATA-T-TG-ACGAGTTATATATTTTTGA-TGTT----------ACCATA-T---CTCTG---ACACTTT-----TCC-GATTATGCCAGTTCAAG------TTC-GAGAT----A--GTGATTA-TGTATC--T-A--CA--ATGTA-AGT--------------CCAT---AACT--G----C---GG-CTAC--T-AG--AGTGCA-CTCA----A----CC-AAAATTTCATGGACAG-A-CGGCA---GAC----ACACGG------------TGATTAGAATAGCTC--ACGTTAAaacaccttagaatggcattaatta
gi|10 : ----TCATGGGCCATG-A---CTCAG---TCT--GGAATAACCA-GGTCAAGTCAGTTAAATAACTTACCC-AAG-T----AGTACAGCTT-TA-ATAGTT-A--TGTTA-AT---GCTTGGATAATATT--CTACAGAAACC--T----C---AG-GTAC--T-AG--AATGTG-T-CA----A----CACAAAAGTTGA-AGACAG-A-CA--A---G-T----A-ACTGAC---------ACGACCACAAAAGCTC--ACATTtgattgttccaaa
gi|7 : A--TTAATCATCT-GATTTGGCCAGGTCAAGAACTTATCCCAAGAT----ATTATGGTTACCGTATA--T----TACTGTGAA-AGTTTGGAGAGGATC--AAATGAAAATT--G----C---GG-GTAC--T-AG--ACTGCA-C-CA----AACGTCA-AATAGTTTAtgtatagaaatgatactaaaa
gi|12 : ttaccgtAAAAATGT-GAATAGGCCAGTTAAAACACTTGT-T-AAGAT----CTCCTGGTTA--ATATA--A-C--TAATGT-TACAGTTTGATCAAGTTT--CAAT---AAATCAG----C---A--GTTC--ATAT--GGTGCA-CACACTTTA----TA-AA---TTAACGGACAG-A-TGGTG---GACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTG--ACTTTTAGT---TTattttttgaacggccattaattatccaatttggtcagttcaagaacttgtccaagatagtatgggtatattactattgtgtaagtttggtaaggatcataaataacaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|15 : ttcaacaaaa-AAGGGTTAACAGACAG-ATCAA-G---GCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTC--TCCTTGAGCAAAATTGCTCAGGTGATCT------AAAAGTTGT
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTC--ACCTTGATC---TTTGCTCAGATCTG-TA----AAAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Alignments
lowQualScore : 1111111 111111111111111111111111
lowQualScore : 3333333 8888888888888888 4 111 4 1 1 22 2 11 33333 1 4 1 4 111 1 1 22222 1 55555555555 222 11 11 44444444444444444444 1 11 2 2 5555555555555555 111 33333333 000000000000000000000000 1 77777777777777777777777 11 11 2222222222222 1111111 111 222222222222222222222222 111 11 111 2222222222222 22222222222 1111111 11111 111 1111 2222222222222 111111 111111 11 22222222 1111 111 11 2222222 2222 3333333333333333333333333 111 111 1 444444444 1
lowQualScore : 6 0000000 6 6 6 6 6 6 888 9999999999999999 6 0 888 1 0 5 6 5 6 6 55 0 1 2 1 4 00 22222 3 7 1 6 6 6 1 0 6 5 0 6 6 6 6 4 4 444 4 4 888 1 5 2 66 4 1 2 2 4 5 4 6 66666 6 22222222222 1 333 7 99 88 3 1 8 99999999999999999999 3 0 7 33 6 11 3 11 2 0 1 2222222222222222 1 555 44444444 4 222222222222222222222222 3 0 4 3 44444444444444444444444 1 7 6 3 0 33 8 11 8 1 1 1 1 3 1 0 1 0 5 0 99 33 5555555555555 1 88 99 1111111 7 000 8888 444444444444444444444444 3 000 3 66 1 222 5 0 0 6 1111111111111 44444444444 5 0 0 5 6666666 22222 7 0 1 777 333 1 6 1 4444 2 3 0 6 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 888888 3 0 5 33 1 3 00000000 2 5555 0 0 0 55 777 0 77 44 1 3 66 4 7777 3 4 1111111 2 5 4 4 4 2 55 99999 66 5 444 1 1 2222 66 1 55 9999999999999999999999999 1 0 1 1 444 1 222 3 1 777777777 6 7
lowQualScore : . ....... . . . . . . ... ................ . . ... . . . . . . . .. . . . . . .. ..... . . . . . . . . . . . . . . . . . ... . . ... . . . .. . . . . . . . . ..... . ........... . ... . .. .. . . . .................... . . . .. . .. . .. . . . ................ . ... ........ . ........................ . . . . ....................... . . . . . .. . .. . . . . . . . . . . . . .. .. ............. . .. .. ....... . ... .... ........................ . ... . .. . ... . . . . ............. ........... . . . . ....... ..... . . . ... ... . . . .... . . . . . . . . . . . .. . ............. . .. ... ...... . . . ...... . . . .. . . ........ . .... . . . .. ... . .. .. . . .. . .... . . ....... . . . . . . .. ..... .. . ... . . .... .. . .. ......................... . . . . ... . ... . . ......... . .
lowQualScore : 0 0000000 0 0 0 0 0 0 000 0000000000000000 0 0 000 0 0 0 0 0 0 0 55 0 0 5 0 0 00 00000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 555 0 0 000 0 0 5 55 0 0 5 5 0 0 0 7 00000 0 33333333333 0 333 3 33 77 7 0 3 77777777777777777777 3 7 3 00 7 77 7 77 5 2 0 5555555555555555 0 000 55555555 2 777777777777777777777777 7 7 0 3 00000000000000000000000 0 7 0 7 7 22 8 00 0 0 0 4 4 0 0 6 0 4 7 4 77 44 8888888888888 5 88 22 8888888 3 222 2222 999999999999999999999999 0 000 6 77 0 777 7 1 7 3 3333333333333 66666666666 6 4 7 7 0000000 99999 9 7 7 888 000 0 7 8 2222 5 7 1 3 9 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 333333 0 1 1 66 7 9 99999999 5 4444 8 9 1 00 222 7 33 00 6 3 22 0 5555 8 0 2222222 3 7 0 0 0 4 55 11111 11 3 111 0 7 1111 44 0 22 0000000000000000000000000 7 7 0 0 000 0 333 3 0 000000000 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGA--AAATGCCAAATTTTGCAGGTACTAG-TGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACATTAATTGTCCAAAGACTATTGTGGNTANACANCAATNGTGCAAGTNANGATGANGACCAAATGTGAANTGTGAGTACTAGAGT-TCATGCACATTTTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-G-ACATT-ATTATCC--------GAATTGGCC---AGTTCGA-AACTTGTC-GAGATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGANTAT-----CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAA--TTATC-------TGATTTGACCAG----------------TTCGA-A-CTTNTCCGAGATATTACGGTT-ATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTT--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCNGATTTGGCCAGTTAAAGAA-CTTGTCTAAGGTATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAA---TA-ACGCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAN-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----ATTATGGTTATATA-ACAACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAA-CGNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTA---G--ANTGCACACAAA--GTCAAATAGTAC----AA-TTTTTGAATGNTTCAAGGGCCATAACTC-GACATTAATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTATAT-ATANA--TACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GCAGNTGCTAGAGTGCACACA----ACA-AAAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---A-GACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCTTTGGTGGAGANNATCAAATGG-AAACT--GCGGGTACTAGATGCGCANAAACGTCAAATAATGTAATTTTTGATGATTAAAGGACCATAACATCCGACATCAATTGTCCGAAGA-TATTATGGNTACANAACAACTGTGCAAGTT-TGGTGAAGATCAAATGAAAANTGCGGGTGCNAGAGTGTCATGCACATTTTTGATTATTCAAGGGCCATAACTCT-GCGACATTTATCCGATTGGCCAGTTCAAGAATTGTCCGAATTACTAACTGTGTAAGTTTGGTGAAGATCAAATGAAAACTGCAGGTGCTANAGTGCACACAANGTCAAATAACGCAATTTTTGACAATTCAAGGGCCATAACT-C-A-ACATTAATTATCC--------GANTTGGCC---AGTTCAAGAACTTGTCCGAGATATTATAGTTATATNACTACTGTGTAAGTTTG-------GTGAGGAT-----CAAATGAAA-ACTGCAGGTGCTAGAGTGCACATAACGNCAAA-AGNGCAAATTTTTGATGATTCAAAGGCCATNACTC-----TGAC-------ANTAA--TTATC-------CGATTTGGCCAG----------------TTCGAGAACTTGTCCGAGATATTATGGTT-ATATAACTACTGTGTAAGTTCGGTCGAA------TNAAAACTGCGGGTGCTAGAGTGCACACAAGGTCAAATA-ATGCANTTTTT--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGANTTGGTCAGTTNAAGAA-CTTGTCTAAANTATTATGGTTAT---ATA-ACNATTGTGTAAGTTTGG-TGAAGATCA--AA-TGA---AAAATGC--NGGTGCTAGAGTGCACACAACGTCAAA---TA-GCGCAAT-TTTT-A-C-GATTCAAGGGCCATAACTCC---GACATTAATAT-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCGAGAT----ATTATGGTTATATA-ATAACTAC-TGTGTAAGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGCACACAAGGTCAAATANCGCANTTTTTAA-TGAT----TCAAGGGCCATAACTCCGACATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTA---G--AGTGCACACAAA--GTCAAATAGTAC----AA-TTTTTGAACGNTTCAAGGGCCATAACTCCGNCATTAATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTATAT-ATATA--TACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GCAGGTGCNANAGTGCACACA----ACA-AAAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---A-GACGATCAGAANAGCTCACCTTNAGC---TTTGCTCAGNTGAGCTA-AAAAANCTGTCCA-TAATAGCATATTCATTCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGA--AAATGCCAAATTTTGCAGGTACTAG-TGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACATTAATTATCCAAAGA-TATTATGGTTACATAACAATTGTGTAAGTA-AAATGAAGACCAAATATAAACTATGAGTACTAGAGT-TCATGCACATTTTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-A-ACACTAATTATCC--------GAATTGGCC---AGTTCAAAAACTTGCCCTAGTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAGTAT-----AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAG--TTATC-------CGATTTGACCAG----------------TTCGATAACTTATCCAAGATATTATGGTT-ATATAACTACTAGATAAGTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTTAAAGAA-CTTATCTAAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAA---TA-GTGCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GTTATGTTTATATA-ATAATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAA-TGTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTA---T--AGTGCACACAAA--GTCAAATAGTG-----AA-TTTTTGAATGTTTCAAGGGCCATAATTCTGTCATTAATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTATAT-ATATA--TACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GCAGGTGCAACAGTGCACACA----ACA-AAAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---A-GACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTCAGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTTTA--ATAGT--TA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TCAGGTACTAGAATGTGT-CA----ACACAAAAGTTGA-AGACAGACAA-GTA-------ACTGAC---------ACGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : A-TTTTTGA-TGTT------ACCATATCTCTGACACT--TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTATGT-ATCTA--CA--ATGTA-A-GT--------------CCA-T------AACT--GCGGCTACTAGAGTGCACTCA----ACC-AAAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatatGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA-AT-ATAAC--TAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGCAGTTCATATGGTGCACACACTTTATA-AA---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAA-GACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-AAGGGTTAACAGACAGATCAAGGCC----T-ACAGAC-AC---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--A-GA-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|18 : TTATCGGATGTGGCCAATTCAATAA-CTTATTCAAGGTATTATTGTTAT---
gi|19 : TCAAGGGACATTACTC-----TG---------ATTAATTTTATC-------TGATATGGC
gi|2 : ATTGTC--AAAACTATTGTGGATAAACATTAATAATGCAAGTTATGATGACGATTAAATGTGAAATGtgatt
gi|2 : aaatagttcccaatCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCG-ACATTTATTATCCAATATAATGAACTGACCTACAGTTTGATAACTTGTCAAAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAA--TTATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAGA-CTTGTCCGAGAAATTAGGGTT-ATATAAGAAGTGTGCACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTGAAAGAT-ATTGTCTAAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAA---TA-AAACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----ATAATGGTTGTATA-CTCACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAA-CGGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-ataacagcaagtgtttgagtatacagcaggccaactatgcatgtttagcaaaggacaaatgaaatctgcgagaaccaaagtccgatctacataaaacaaagcaatatttgaatttcaagggcaataactccgacatttattatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-C-AGACATT---TA------------AATTGGTC---AGT-CA-------GTC-GAGATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAATAG-----CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACAT--TTACC-------TGATTTGACCAG----------------CTC-----CTTTTATAAGTTATAACGGTTTATATAACTACT-------------CAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAAAAAT-ATTCGATTAAGCCTGTTTAAAAC-CCTCT-TGGAG-ATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAA---TATATACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGATTATGGTTATATA-ACA---AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGA-CGCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAG-AT-ATGATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAG---TG-ATGTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT-ATGAATATACA-GCAACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------A-TGAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTA---G--AGTACACACAAG--GTTTA-TAGTAC----AA-TTTTTTA-TGTTTCAAGGGACATTACTCTGAAATTAATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTAT-T-ATATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GCAGCTG---GAGTACACACA----CCA-AAAAGTTT----ATAGATGG------------TAGACAAC---A-GGTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCA-TTTTT--GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTTATCGAA-CTTGGCTCAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATGTTA-GC---AT-TTTTGA-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TTTATAG--AGATGCAT-ACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGAAAC--GGT-AAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTA---GTTATTGAGCAGAAATGGGC-AATTTTAA----CA-TTTTTGACTAATCAAAGTGCCATAACTC------TAAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--AAGT-ACAAA--CTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACaacaccttagaatggcattaatta
gi|6 : aacaattttaCAAA---TA-AGGTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CTT-------TAAG-GCAGCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA--TGAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTA---A--ATTAGACACACA--GTCAAATAACAC----AA-TTT---AATAAATCAAAGGTCGTATATCC-ACATAAAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAAT-T-ATATA---ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GCAGATGCTAGAGCACACAAA----AC--GAAGGTTAACtctagttactgaacagaaacgataaacttgacgccacccata
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTA---G--ACTGCAC-CAAAC-GTCAAATAGTTT----AATTTTTTGAACG-------------------GCCATTAATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTATAT--TAC---TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccgtTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTATTCA--AGTGC-----------TAAAT-GTAT----T--TTTTTTATTAATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTATATGATAAC--TGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----CAAATACCAGACTACACACATTT-ACA-AAAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTTAAAAAA-CCTATCTAGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA-----------------------TTT-A-C-AA--AAAGGGCCATAACGCT-----------TATGTCTGATTTG--------TTGAGAAGTTGCCCAAGA-----AT-----CTATAT--AT--CTCA-TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCA---A--AATGCACTTAAG--TCCAAACGATGCTCATAT-TTTTTTAATGATTCTGGGTTCATA-----------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCTTATAT-A-A-A--TTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Alignments
lowQualScore : 11111111111111 1111111111111111111111111
lowQualScore : 2 1 222 22222 22 111 222 1 333333 1 2 11111111111111 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 88888888888888888888888888 11 111 2222222222222 1111111 111 2222 1111111 1111 111 111 22222222222222 22222222222 1111111 11111 1111 2222222222222 111111 111 11 11111 111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2 3 0 5 3 111 66666 2 4 2 2 2 77 222 666 2 1 1 444444 11 8888 1 2 0 1 4 0 2 33333333333333 2 5 2 2 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 33333333333333333333333333 1 0 1 33 999 8 1 333 1 0 5 5 4 5 6 888 6666666666666 1 6 99 1111111 7 222 8888 4444 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 33333333333 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 5 99 5 3 77777 0 555 5 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : . . . . . ... ..... . . . . . .. ... ... . . . ...... .. .... . . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . .......................... . . . .. ... . . ... . . . . . . . ... ............. . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. ........... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .. . . ..... . ... . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 5 0 0 0 0 000 55555 5 0 5 5 5 55 333 000 0 0 0 333333 77 3333 0 0 7 0 0 0 5 55555555555555 5 5 5 5 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 3333333333333333333333333 0 7 7 3 00000000000000000000000000 0 7 0 22 666 0 0 222 0 6 7 3 0 7 3 777 2222222222222 5 7 22 8888888 3 888 2222 9999 3 7 6666666 0 0000 1 4 111 0 777 7 1 7 3 44444444444444 66666666666 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 1 33 0 9 44444 4 222 9 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCAGATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAATTGTCCAAAGA-TATTGTGGNTANACA-----NCAATTATGCAAGTTAAGATGANGACCAAATGTAAACTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-G---A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCNGATTTGGCCAGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA--ATGCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAAG--GTCAAATAGTAC----AATTTTTNAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCAGATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTGTCCAAAGACTATTGTGGNTANACA-----NCAATNGTGCAAGTNANGATGANGACCAAATGTGAANTGTGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GA--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GC--A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTT--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCNGATTTGGCCAGTT-AAAGAACTTGTCT-AAGGTATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA--ACGCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAN-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAACA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAAA--GTCAAATAGTAC----AATTTTTGAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCAGATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGA-TATTATGGTTACATA-----ACAATTGTGTAAGTAAA-ATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTA-GATAA-GTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA--GTGCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAAA--GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : ATTTTTGA-TGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatatGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|18 : TTATCGGATGTGGCCAATT-CAATAACTTATTC-AAGGTATTATTGTTAT---
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ATTGTC--AAAACTATTGTGGATAAACA-----TTAATAATGCAAGTTATGATGACGATTAAATGTGAAATGtgatt
gi|2 : aaatagttcccaatACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAG--CAAG---TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGA-CAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATataacagcaagtgtttgagtatacagcaggccaactatgcatgtttagcaaaggacaaatgaaatctgcgagaaccaaagtccgatctacataaaacaaagcaatatttgaatttcaagggcaataactccgacatttattatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGC--ACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA--AAACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC---------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATAT-ATACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG--ATGTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAAG--GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATGTTA-GCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATGGGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaCAAATA--AGGTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACACA--GTCAAATAACAC----AATTT---AATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACccacccata
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCAC-CAAAC-GTCAAATAGTTT----AATTTTT---TG----AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAAGT-GCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATAT------CTCA-TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAAG--TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 6666666 222 1 1 222 22222 11 222222 1 2 55555 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 999999999999999999999999 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 2222222 11 11111 1111 33333333333333333333333333 111 333 1
lowQualScore : 5555555 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 111111 5 3 1 1 1 00000 4 99 77 1 5 4 4 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 111111111111111111111111 1 0 1 33 222 8 1 333 1 2 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 999 5 0 55 8888888 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666666666666666666 1 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. ...... . . . . . ..... . .. .. . . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . ........................ . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . ... . . .. ....... .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. .......................... . . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 000000 5 0 0 0 0 00000 0 55 00 0 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 333333333333333333333333 0 7 0 22 444 0 0 222 0 2 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 999 9 8 00 6666666 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 11111111111111111111111111 7 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACAT-TAATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAATTGTCCAAAGATATTGTGGNTANACANCA-----ATTATGCAAGTTAAGATGANGACCAAATGTAAACTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTGGA---GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCNGATTTGGCCAGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTNAATGNTTCAAGGGCCATAACTC-GACAT-TAATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTAGATAAGTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCAT-TAATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGAC---------ACGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACAC-T--TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGCACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC-------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAAT-TAATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC-------TAAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AATTT---AATAAATCAAAGGTCGTATATC-CACAT-AAAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTT---TG----AACGGC-----------CAT-TAATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACAT-TTATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 88888888888888888888888888 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 33333333333333333333333333 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . .......................... . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . .. . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 00000000000000000000000000 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-G---A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GC--A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTA-GATAA-GTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGC--ACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC---------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 999999999999999999999999 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 111111111111111111111111 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . ........................ . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . .. . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 333333333333333333333333 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTGGA---GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTAGATAAGTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGCACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC-------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 88888888888888888888888888 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 33333333333333333333333333 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . .......................... . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . .. . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 00000000000000000000000000 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-G---A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GC--A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTA-GATAA-GTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGC--ACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC---------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 999999999999999999999999 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 111111111111111111111111 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . ........................ . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . .. . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 333333333333333333333333 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTGGA---GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTAGATAAGTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGCACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC-------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 88888888888888888888888888 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 33333333333333333333333333 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . .......................... . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . .. . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 00000000000000000000000000 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-G---A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GC--A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTA-GATAA-GTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGC--ACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC---------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 999999999999999999999999 11 222 222222222222222222222 1111111 111 1111 1111111 1111 111 111 22222222222222 2222222 1111111 11111 1111 2222222222222 111111 111 1111 11111 22222222 11 11111 1111 33333333333 2222222222 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 111111111111111111111111 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 222 8888 3333 0 5 9999999 1 3333 0 1 222 1 222 5 0 0 0 11111111111111 55 6666666 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 77777777 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666 0 7777777777 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . ........................ . . . .. ... . . ... . . . . . . ..................... . . .. ....... . ... .... .... . . ....... . .... . . ... . ... . . . . .............. .. ....... . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . ... . .. . .... . . ..... . .. . . .. ........ .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. ........... . .......... . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 333333333333333333333333 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 888 2222 3333 3 7 6666666 0 0000 1 4 999 0 777 7 1 7 3 44444444444444 33 4444444 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 88888888 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 00000000000 1 3333333333 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTGGA---GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTAGATAAGTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGC--TGGTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGT-TTTT-A-T-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTTGAGAT----GT-TATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCATT-AATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGACA---------CGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACACT---TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGCACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GC--GGGTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTG-A-T-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCAAAAGT----AT-AATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC-------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGA--GAGTGCTAGAATGCACAC-AC-TAAAATATAT-ACAAT-TTTTGA-C-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCCAAGATATTGAT-TATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGC--AGGTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAAC-ATC--A---GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCA-AC----AT--ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAATT-AATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCATT-TTTG-A-CTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCCTAGAT----TT-TATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC------T-AAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAAT-TTTT-GGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------CAAGAT----CT-T-------TAAGGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACATA-AAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CATT-AATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACATT-TATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--C--AAATACCAGACTACACACA---------------------TTT-A-C-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCCAAGA-----ATCTA----TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT-----T-----------AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
blockSeqs : TCATCAC . T G A . G . . G T A G A GA A . . . G GGCCA T TT CA . A T A G C AAAACAAAGCAATA A . A A . T T G A T A A G C AT T C A A A . T CC TATTATCCAATATAAT TAC TTGATAA AAA G TGTTATG TGATATGGT C A T . G T CAAAATAACTATTTAAA A TT AAAAATT G AAATTATTTATTAAGTTTTTAAG G G T TGTGCACACTTGATGGAAATAAGA C A CA TTT T A TTA A G T G G C AAAGTTATATGATAACTGGT T C AC TGATTG T TAT GCGC TAT A TGACG C TAAA A AAA A CTG A TATTGATTATGGT AC ACTATG T C ATCTA CTTAA C C C GGA A T G GGGA C A T C G CA T TCAGTTTATA A TT GAG GTTTGA A A GTT G AC A ATG A A CTCAT A GA T AC AGTCTGG AA CA A A CA C AGTA T G ACTAA G G C T C T AA GATTG CA TCT G A A CTTT AC T G TG TGGACAATAA ACGCAAGAC A A AAA GAT T T
blockSeqs : CA TA . CA GA C . ATAG . . T . T A AAACA A . . T GCTC T C . TCAAA T T A C . C ATT C T . A G . TTAGAGATACACACTTT T . . ATGG T G AGGT TTA . GACTA C C A TA T TC . TATAATGGT AA TACTT A . TGAAA C A C T AAC A . C . A T T C . G . CCGTA . . GGG AA A G G T GA A GT A T C A AC T TC TGACACT TA CC C C CG . CTCC . . ACTAC A G . . . C . AG . . C A G TTT C . C CG CAGACAC CAGGAC T T . . .
blockSeqs : T A TGAT T . . A . G . T TTT T A . G G . GATTATATAGAAATG G . . TGA T G ACGG AA . TGGTA A C A AT C CC . CATATGAA AG GCTAC A . TAG C G C G TTT C . A . A A A T . G . TA . . GAG TT C G A T AG A G A A A A AA A AC TGAAATT GA CT A A TG . TTTA . . AACTT G G . . . G . GA . . T C G . A . A CA AGGCCT AAGAGA T G .
blockSeqs : . . A AA A T . A A . TTGATATTATT C . . TAA . A ACT AT . GATG A C A AG T AT . TTTTATAG GG ACT T . CTG C A C T AGG A . A . A G T T . T . TA . . CAT AA T A G C GC C A A A C A AT A AC AGACATT TA CC C A CT . ATTT . . ACTGG A G . . . T . GA . . C G G . A . A CG GTA ACAGGT A G .
blockSeqs : C A . . . . AGTTA . . . . . A . AG . TACA T A C TG A T . ATCTA CT AT T . CAG A C . . . T . A . C T C T . A . TT . . . AA T A A T GC T C . G T T AA A TA CACATA TT CC C A CA . AGTA . . AATTC G A . . . A . AA . . T A G . G . T A . C A T
blockSeqs : . . AG A . . G T . . TCTT G . C . AGA . . . T T . G . T . . . . G . . A . . G . . T . A A AC CATT AA CC C A A . CTTA . . GTTA G G . . . A . AA . . A G C . A . G . T T
blockSeqs : . . . . . G . . T T . A T T . ATT . . TACA G . . . . G . GA . . A A . . . . A
blockSeqs : . . . . T . T . AG . . TAAC C . . . . C . . . . .
blockSeqs : . . . . . . . CTAT . . . . . . . .
blockSeqCons : TGACG** TNTAATGGT***** C****
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTT-A-C-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGAT----AT-TATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GCA-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGC--GGGTGCTAGAGTGCACACAACGTCAAATA-AT-GCAAT-TTTTGACG--ATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCCAAGATNTAATGGT-----TATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACATT-AATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 3333333 222 1 1 222 22222 11 222 1 1 22222 11 1 1 55555555555555 1 222 1 1 333 66666666666666666 222 33333333 2222 4444444 222222222 1 1 44444444444444444 11 3333333 0000000000000000000000000 1 88888888888888888888888888 11 222 222222222222222222222 1111111 1111 11111 1111 111 1111 111 111 3333333333333333333333333333 1111111 11111 1111 2222222222222 111111 111 1111 11111 2222222 11 11111 1111 33333333333333333333333333 111 333 1
lowQualScore : 2222222 111 1 1 5 5 1 111 66666 1 1 1 2 1 88 1 000 5 5 1 55555 1 66 22 5 1 1 1 5 1 33333333333333 1 5 1 1 111 1 1 1 1 1 1 1 5 1 22 1 2 1 2 1 5 1 000 77777777777777777 333 55555555 1111 1 3333333 333333333 3 7 0 7 3 0 1 0 1 11111111111111111 1 33 2222222 1 8888888888888888888888888 1 0 3 3 33333333333333333333333333 1 0 1 33 222 8 1 333 1 6 6 3 3 6 888888888888888888888 1 6 99 1111111 7 0000 11111 3333 0 555 000 1 3333 0 1 222 1 222 5 0 0 5 5 3333333333333333333333333333 1 0 0 5 6666666 22222 6 4 5 888 1 6 1 4444 1 1 0 0 2 1 0 0 5 55 5 4444444444444 5 77 888 444444 1 1 4 0 333 1 22 1 1111 5 3 77777 1 44 2 0 55 8888888 77 44 1 3 66 4 7777 0 4 4 11111 2 5 4 4 4 2 55 99999 66 777 1 1 1 0 9999 66 4 1 11 66666666666666666666666666 1 0 1 1 444 222 3 1
lowQualScore : ....... ... . . . . . ... ..... . . . . . .. . ... . . . ..... . .. .. . . . . . . .............. . . . . ... . . . . . . . . . .. . . . . . . . ... ................. ... ........ .... . ....... ......... . . . . . . . . . ................. . .. ....... . ......................... . . . . .......................... . . . .. ... . . ... . . . . . . ..................... . . .. ....... . .... ..... .... . ... ... . .... . . ... . ... . . . . . ............................ . . . . ....... ..... . . . ... . . . .... . . . . . . . . . .. . ............. . .. ... ...... . . . . ... . .. . .... . . ..... . .. . . .. ....... .. .. . . .. . .... . . . ..... . . . . . . .. ..... .. ... . . . . .... .. . . .. .......................... . . . . ... ... . .
lowQualScore : 0000000 555 0 0 5 0 0 000 55555 0 0 0 5 0 00 0 555 5 5 0 55555 0 55 00 0 0 0 0 0 0 55555555555555 0 5 0 0 000 0 0 0 0 0 0 0 0 0 00 0 5 0 5 0 0 0 000 33333333333333333 333 33333333 3333 0 3333333 777777777 3 3 7 3 3 7 0 2 0 22222222222222222 2 88 5555555 2 0000000000000000000000000 0 7 7 3 00000000000000000000000000 0 7 0 22 444 0 0 222 0 3 7 7 7 7 000000000000000000000 5 7 22 8888888 3 8888 33333 3333 1 999 111 0 0000 1 4 999 0 777 7 1 7 7 7 3333333333333333333333333333 0 4 7 7 0000000 99999 6 3 7 555 0 7 0 2222 0 0 1 5 4 1 1 2 0 44 7 2222222222222 0 99 666 000000 7 0 0 4 111 0 44 6 7777 0 9 44444 7 22 8 8 00 6666666 33 00 6 3 22 0 5555 9 0 0 55555 3 7 0 0 0 4 55 11111 11 888 0 1 4 4 4444 44 4 0 88 11111111111111111111111111 7 7 0 0 000 333 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-G---A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGCGG--GTGCTAGAGTGCACACAACGTCAAATA-AT-GCAATTTTTGAC-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCC-AAG-ATNT--A--ATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACAT-TAATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
Reference ( family-285 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGAGGGCCATCATCACGGTTGGCTCTAAGTCGCTCACCTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTANTGTGNATAAACATCACATAATGCAANTTTTGATGATTCAAGGACNATNANACGCGANATGATAACNGCCCAAAGATGTTATGGNTACACAGCAGGCCAACTGTGCANGTTNAGNNGAGGACCAAATGNAANCTGCGAGNACCAGAGTCCGATNCACATAAAACAAAGCAATATTTGANTATTCAAGGGCNATANCTCTTGCGACATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACCAACTGTGCANGTNTANCGAAGGNCAAATGAAANCTGCGAGNGCCANAGTNCGNNCNACGTNAAACAACGCAATNTTTGACANTTCAAGGGCAATAACT-C-GACATT-A-TTATCC--------GAATTGGCC---AGTTCGA-AA-CTTGTCG-A-GATATTATANTTATATAACTACTGTGTTAGTTTG-------ATGAN--TAT---CAAATGAAA-ACTACAGGTGCTAGAGCGCACATAACTTCAAATAACGCAA-TTTTTGACGATTCAAGNGCCATNACTC-----TGAC-------AATAATT--ATC-------TGATTTGACCA--------------GTTC---GG--ACTTNTCCGAGATATTACGG-TTATATAACTACTG-GC--A-GCTTGGTCGAA------TGANAACTGCGAGCGCTAGAGTGCACANAAGATCAAATA-ATGCATTTTTC--GAC-GATTCAAGGGCCATAACTCNGACANTAATTATCCGATTTGGCCGGTT-AAAGAACTTGTCT-AAGATATTATGGTTAT---ATA-ACTATTGTGTAAGTTTGA-TGAAGATCA--AA-TGA---AAAATGCGG--GTGCTAGAGTGCACACAACGTCAAATA-AT-GCAATTTTTGAC-GATTNAAGGGCCATAACTCC---GACATTAATAG-TCNGATTTGGCC-AGT-TCAAGAACTTGTCC-AAG-ATNT--A--ATGGTTATATAGCA-ACTAT-TGTGTANGTTTGGTGAAGATCA-AATGAAAAATG--CGG--GTGC----TAGAGTGNACACAACGTCAAATANNGCANTTTTTAAC-GNT----TNAANGGCCATAACTCTGGCATTAATTATCCGATTTGGCCAGTTC-AAGAACTTGTCC-GAGAT-ATTATGGTTA---T--------ATAA-CTAC--TGTGTAAGTTTGGTGAGGATCA----AATGAAAANTGCGGGTGCTAG--ANTGCACACAA--G-GTCAAATAGTAC----AATTTTTTAATGNTTCAAGGGCCATAACTC-GACAT-TAATNATCCGATTTGGCCAGTTCAAGAACTTGTCCGAGA-TATTATGGTTA-TAT-ATANATACTGTGTA-A-GTTTGG-TNAAGAT--CCAATGA---AAAAT--GC---AGNTGCTAGAGTGCACACA----ACA-A-AAAGTTNACGGACAGACGGCGGAC----G-ACGGACAAC---AG-ACGATCAGAANAGCTCACCTTGAGC---TTTGCTCAGATGA-CTA-AAAAANCTGTCCATTAACGTCTTATTTAATCA
gi|1 : AACAAGAGGGCCA-------GATTGGCTCTAAGTCGCTCACTTTTAGTGGAGGAGAAAATGCCAAATTTTGCAGGTACTAGTGTATATAAAC-TCACATAATGCAATTTTTGATGATTCAAGGACCATAACACCCGACAT--TAATTATCCAAAGATATTATGGTTACATAACA-----ATTGTGTAAGT-AAAATGAAGACCAAATATAAACTATGAGTACTAGAGTTC-ATGCACAT------------T-TTTGACTATTCAAGGGCCATACCTCTTGCAATATTTATCCGATTGGCCAGTTCAAGAATTGTTCAAATTACTAACTGTGTAAGTATACCGAAGATTAAATGAAAACTACAAATGCTATA-TGCACACAAGGTCAAATAACACAATTTTTGACAATTCAAGGGCAGTAATTAC-AACACT-AATTATCC--------GAATTGGCC---AGTTCAA-AAACTTGCCCTA-GTTATTATAATTACATTACTACTGTATTAGTTTA-------ATGAG--TAT---AAAATAAAA-ACTACACGTGCTAGAGTGTACATAACAACAAA-AAAACAAATTTTTGATGATTCCAAGGCCATTACTG-----TGAC-------AATAGTT--ATC-------CGATTTGACCA--------------GTTC---GATAACTTATCCAAGATATTATGG-TTATATAACTACTA-GATAA-GTTTAGTCAAA------TTAAAGTTGTGAGTACTAGAATGAACACAAGGTCAAACA-ATGCATTTTTT--GAC-AATTCAAGGGTCATTACTCGGACAGTAATTAACCGAGTTAGTCAGTT-AAAGAACTTATCT-AAATTATTATGGTTAT---ATA-ACAATCGTATAAGTTTGA-TGAGAATCA--AA-TGA---AAAATGCTG--GTGCTAGAGTGCACACAAGGTCAAATA-GT-GCAGTTTTT-AT-TGTTCAAGGGCCATTACTCC---GACATTAATAT-TCAGATTTAGCC-AGT-TCAAGAACTTGTTT-GAG-ATGT--T--ATGTTTATATAATA-ATTAC-TGTGTAAGTCTGGCGGGGATCA-CATGAAGAATG--AGG--TTGC----TAGATTGCAAACAAGGTCAAATATTGTATTTTTTAAT-GTT----CCAAGGGCCATAACTCGGACATTAATAATCCGATTTGGCCATTTT-AACAACTTGTCT-AAAAT-ATTATGCTTA---T--------ATAA-CTGC--TGGGCAAGCTTGGTGAGGATCA----ACTGAAAATTTTGAGTGCTAT--AGTGCACACAA--A-GTCAAATAGTG-----AATTTTTGAATGTTTCAAGGGCCATAATTCTGTCAT-TAATAATGAGATTTGGCCAGTTCAAGAACTTGTCCAAGA-TATCATGGTTA-TAT-ATATATACTATATA-A-GTTTAG-TGAAGAT--TCAATGA---AAAAT--GC---AGGTGCAACAGTGCACACA----ACA-A-AAAGTTCACAGATAGACAGCAGAC----G-ACGGACAAC---AG-ACGATCAGAATAGCTCACCTTGAGC---TTTGCTCAGATGAGCTA-AAAAAGCTGTCCATTAACGTCTTATTTAATCA
gi|10 : tatggacagcatatcggatatccaaatgatTCATGGGCCATGACTC-AGTCTGGAATAACCAGGTCAAGTCAGTTAAATAACTTACCCAAG--TAGTACAGCTT-TA--ATAGTTA-TGT-TA-ATGCTTGG-ATAATAT--TCTACAG---AAACC--TC---AGGTACTAGAATGTGT-CA----ACACA-AAAGTTGA-AGACAGACAA-GTA-------ACTGAC---------ACGACCACAAAAGCTCACATTggctagtgaatgcca
gi|11 : TTTTTGATGTT------ACCATATCTCTGACAC-T--TT-TCCGATTATGCCAGTTCAAG------TTCGAGA-TA--GTGATTA-TGT-ATCTACA--ATGTA-A-GT--------------CCA-T------AACT--GC---GGCTACTAGAGTGCACTCA----ACC-A-AAATTTCATGGACAGACGGCAGAC----ACACGG------------TGATTAGAATAGCTCACGTTAAtgtatagaaatgatactaaaa
gi|12 : agttaaatattgacgagttatataGGCCAGTTAAAACACTTGTT-AAGA-TCTCCTGGTTA--AT-ATAACTAATGT-TACA-GTTTGA-TCAAGTT--TCAAT------AAATCAGC---AGTTCATATGGTGCACACACTTTATA-A-A---TTAACGGACAGATGGTGGACAATAA-ACGGGGAACGCAAG-ACGATCA-AATAAGTGACTTTTAGT---TTtgattgttccaaa
gi|15 : ttcaacaaaaaaaaatgtgaata-A-AGGGTTAACAGACAGATCAAGGCC----T-ACAGACA-C---AGGACAAACAGAAAAGCTCTCCTTGAGCAAAATTGCTCAGGTGATCTA-AAA
gi|17 : ----G-ATGGATAAAG--AG-A-GATTAGAAAAGTTCACCTTGATC---TTTGCTCAGAT---CTGTAAAAATCTgttgt
gi|19 : TCAAGGGACATTACTC-----TGAT---------TAATTTTATC-------TGATATGGC
gi|2 : ACTATTGTGGATAAACATTA-ATAATGCAAGTT---ATGAT-----GACGATTAAATGTGAAATGATAACAGC---AAG-TGTT-TGAGTATACAGCAGGCCAACTATGCATGTTTAGCAAAGGAC-AAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGAAT-TTCAAGGGCAATAACTC---CGACATTTATtgatt
gi|2 : aaatagttcccaatattgtcaaaCCAACTATGCATGTTTAGCAAAGGACAAATGAAATCTGCGAGAACCAAAGTCCGATCTACATAAAACAAAGCAATATTTGA-ATTTCAAGGGCAATAACT-CCGACATTTA-TTATCCAATATAATGAACTGACCTACAGTTTGATAA-CTTGTCA-AAGATATTATGGTTATATAATTACTGTGTTCGTTTGTGTTATGATGATGATATGGTCAAATGAAACAATATAGGTGCT-GAGCGCTCATAACTTCAAATAGCGCAA-TCTTTGACAATGCAAGTGTCATAACTCCAAAATAACTATTTAAAATAATT--ATCAAAAATTTAATTTATCCAAAATTATTTATTAAGTTTTTAAG--ACTTGTCCGAGAAATTAGGG-TTATATAAGAAGTGTGC--ACACTTGATGGAAATAAGATGACAACTGCCAGTGCTAGAGTGCACAAAACATCAAATGCATGCAATTTTC--GAC-GATTCAAAAGCCATGACTCAGACATTAATTATCATATTTGGTCGGTG-AAAGATATTGTCT-AAGAAATTA--GTTA------------------------GG-CGAATATCA--AA--------ACA-GCGG--GTGCTGAAGTGCACACAGCGCCAAATA-AA-ACAATATTTGAT-GATTCAAGTGACTTAATTCC---GACATTAATTA-TCACAAATGGTC-AGT-TTAAGAACTTGTCA-AAA-GTAT--A--ATGGTTGTATACTC-ACTATGTATGTATGTTAGATGATGATCA-AATGAAAAATG--TAG--ATGC----TAGAATCCACACAACACCAAATGGAGCAATTTTTAAC-GGT----TCAAAGGCCATTACTCTGGCATTAATTATCCATTTTGTCCAGTTC-AGGAACTTTTCC-GAGAT-ATTATGGTTA---T--------ATAA-tatccaatataatgaactgacctacagtttgataacttgtcaaagatattatggttatataattactgtgttcgtttgtgttatgatgatgatatggtcaaatgaaacaatataggtgctgagcgctcataacttcaaatagcgcaatctttgacaatgcaagtgtcataactccaaaataactatttaaaataattatcaaaaatttaatttatccaaaattatttattaagtttttaagacttgtccgagaaattagggttatataagaagtgtgcacacttgatggaaataagatgacaactgccagtgctagagtgcacaaaacatcaaatgcatgcaattttcgacgattcaaaagccatgactcagacattaattatcatatttggtcggtgaaagatattgtctaagaaattagttaggcgaatatcaaaacagcgggtgctgaagtgcacacagcgccaaataaaacaatatttgatgattcaagtgacttaattccgacattaattatcacaaatggtcagtttaagaacttgtcaaaagtataatggttgtatactcactatgtatgtatgttagatgatgatcaaatgaaaaatgtagatgctagaatccacacaacaccaaatggagcaatttttaacggttcaaaggccattactctggcattaattatccattttgtccagttcaggaacttttccgagatattatggttatataa
gi|3 : aaatagttcccaatattgtcaaaactattgtggataaacattaataatgcaagttatgatgacgattaaatgtgaaatgataacagcaagtgtttgagtatacagcaggGGGTCATACCT-CAGACATT----TA------------AATTGGTC---AGT-CA--------GTCG-A-GATATTTTACATATATAACTACTGTGTAAAGTTG-------GTGAA--TAG---CAAATGAAA-ACTGCAGGTGCTATAGTGCATATAACTTCAAATAACGCAA-TTCTTGACAATTCAAATGCCACAATTC-----AAAC-------AACATTT--ACC-------TGATTTGACCA--------------GCTC--------CTTTTATAAGTTATAACGGTTTATATAACTAC---------------TCAAA------TGATAACTGCGAGCGGAAGAGTGCACTTAAGATCATATA---GCATATTTG--GAT-GATTCAAGTGCCAGAACTCCAACAA-AAATATTCGATTAAGCCTGTT-TAA-AACCC-TCT-TGGAGATTTTG---AT---AT----TATTGTGTAAGTTTGA-TTGAGACTA--AA-TGA---AAACTGAGA--GTGCTAGAATGCACAC-AC-TAAAATATAT-ACAATTTTTGAC-GATTCAAGGGACATAACTCC---GACACTAATAT-GCTGATTTTG-T-AGC-TCACGAAGTTGTCC-AAG-ATATTGATTATGGTTATATAACA----AT-TGTGTAAGCTTAGCGAAGATCA-AATGAAAACTG--CTG--GTGC----TAGAGTGAACACAACTTCAAATAACATAATATTTGAC-GCCGGGATAAATGGCAATAACTCCGGCTTTAATTATTCAATTGAGCCAGTTT-AAGAACCTGTCC-
gi|4 : TAGCTAATTTGGCTAGTTTAAAAAACTTGTCCCAAGATAT---GATTAT---ATA-GAAATGGTGCAGGTTTGA-TGAAGATCA--AAATGG---AAACTGCAG--GTGCAAGAATGACCAAAAGGTCAAGTG-AT-GTAACATC--A--GATTAAAGGACCATAACTCC---AACATTAATAAATCCAATTTGGCC-AGT-TCAA-AACTTGTCCCAAC-AT-------ATGAATATACAGCA-ACT----GTGCAAGTTTGATGAAGATCA-AATGAAAAGTG--CAG--GTGC----TAGAGTG---ACTATG-CAA------CAC------AT-GAT----TAAAAGGCTGTAAC------------------ATT-GACCAGCTC-AAGATTTCATTC-GAAAT-ATT----TT--------------TAA-CTAC--TATGTAAGTTTGGTGAGGATCA----AATAAAGAATGCAGATGCTAG--AGTACACACAA--G-GTT-TATAGTAC----AATTTTTT-ATGTTTCAAGGGACATTACTCTGAAAT-TAATTATCTAATTTGGCCAATTCAAGAACTTGTCTGAGA-TATT---GTTATTAT-ATAACTACTATGCA-A-GTTCAG-TGAAGAT--CCAAAGA---AAAAT--GC---AGCTG---GAGTACACACA----CCA-A-AAAGTTT----ATAGATGG------------TAGACAAC---AG-GTGATTAGACTAGCCCACCTTTAAC---TTTGataatagcatattcattca
gi|5 : gattcaaactaataatccctggattgatagactgaGCATTTTT---GACTAATTAAAGGGCCATAATTCTGAAGATTATGGTCAGAATTGGCTTGTT-ATCGAACTTGGCT-CAGATTTTTTAGAGAT---ACACACT-TTGTGTAAGTTGGC-TTCAGTTCA--GA-TAA---AGAATACTATAGTAATTGAGCGGA---AACGGTAAATG-TTAGCA-TTTTTGACTAATTAAAGGGCCATAACTCTAAAGACA--AATAG-TCTGAATTGGCTGAGTATT--GAACTTGGCC-TAG-ATTT--T--ATAG--AGAT-GCATACT-T-TGTGTATGTTTGCTTCAGTTCT-GATAAAGAATAATCTA--GTTA----TTGAGTGGA---AACGGTAAATTTTAGAATTTTTGACTAAT----TAAAGGGCCATTACTCTAAAGATAATAGTCTGAATTGACTGGTTA-TTGAACTTGGCC-TATAT-TTCATAGAGA---T---------TAA-C-ACTTTGTGTAAGTTTGCT-----TCAGTTTGATAAAGAATAC---T-CTAGTTATTGAGCAGAAATG-GGC-AATTTTAA----CATTTTTGACTAATCAAAGTGCCATAACTC-------TAAAGAT--AA--TGGCCCGT--A-----TTGGCCTAGA-TTTTATAG--A-AGT-ACAAACTTTGTGTA-A-GTTTGG-TTCAGTT--CCGATGA---AAAAT--ACTCTAGTTACTGAA---CAGA-A----ACG-ATAAACTTGACGaacaccttagaatggcattaatta
gi|6 : aacaattttaAACAAGAGAGCCATCATCACGGTTAGCTCTAAATTGCTCACCT---GTGGccacccata
gi|6 : gtggttaacatttaagataaattgCAAATA-AG-GTAATTTTTGGT-AATATAAGAACCGAAACATA---GACATTCGTTG-TCAAATTTTAAT-TGC-TCAAGA-------C-AAG-ATCT---------TTA-A-GGCA-GCTAC-AATGTCTGGTTGATGAAGATCC-AATGAAAAACG--TGAAAGTG------AGAGAGAACACAACATCAAACAGGGCATTTTTTA-T-GAA----TCAATGGCCATAACCCTAGCATTATTTATATGATTTTGCCTGCTC-AAGAACTAGTCC-AAGATTATTATGGTTA---TCAGTTTATATAAACTAC--TGTGTAAGTTTGGTGGGGATCC----TTTGAAAACTGTGGATGCTAA--ATTAGACACAC--A-GTCAAATAACAC----AA---TTTAATAAATCAAAGGTCGTATATC-CACAT-AAAT-----GATTTGGAGAGTTCAAGAACTTGTCT--GA-TATTTTGGTAA-T-T-ATATA-ACT------A-GTTTGG-TAAAGAT--CCAATAA---AAAAT--GC---AGATGCTAGAGCACACAAA----AC--G-AAGGTTAACcattattagattgtaccaaataaggtaatttttggtaatataagaaccgaaacatagacattcgttgtcaaattttaattgctcaagacaagatctttaaggcagctacaatgtctggttgatgaagatccaatgaaaaacgtgaaagtgagagagaacacaacatcaaacagggcattttttatgaatcaatggccataaccctagcattatttatatgattttgcctgctcaagaactagtccaagattattatggttatcagtttatataaactactgtgtaagtttggtggggatcctttgaaaactgtggatgctaaattagacacacagtcaaataacacaatttaataaatcaaaggtcgtatatccacataaatgatttggagagttcaagaacttgtctgatattttggtaattatataactagtttggtaaagatccaataaaaaatgcagatgctagagcacacaaaacgaaggttaac
gi|7 : gtggttaacatttaagataaattgaacaagagagccatcatcacggttagctctaaattgctcacctgtggcattattagattgtacGTATTAATCATCTGATTTGGCCAGGTC-AAGAACTTATCCCAAGAT-ATTATGGTTACCGT--------ATA--TTAC--TGTGAAAGTTTGGAGAGGATCA----AATGAAAATTGCGGGTACTAG--ACTGCACCAAA--C-GTCAAATAGTTT----AATTTTTTG-------AACGGC-----------CAT-TAATTATCCAATTTGGTCAGTTCAAGAACTTGTCCAAGA-TAGTATGGGTA-TAT--TAC-TATTGTGTA-A-GTTTGG-TAAGGAT--C--ATAA---ATAA
gi|8 : ttaccTA---T--------ATAA-ATAT--TGTCTAAGACTAACCATGGTCA----AATGC---TTACATGAGCTA----TT-----CAA--GTGCTAAAT-GTAT----T-TTTTTTATTAATTCAAGGTCAATAACTCAGACAT-TTATTTTCCGGTCTAGTGAGTTAAAAAACCTATCT-AGACTCTTAAAGTTA-TATGATAACTGGTGTATA-A-GTTCGGCTGATAATAAACAATGATTGAAAA----C---AAATACCAGACTACACACATTT-ACA-A-AAAGcaattcaataagaactctaatactgttccacaggtacatagtcagaccaggtacttattgtacagcaagtttcattcgaatccggttaaaactgtgggaggagtt
gi|8 : aA-ATGTATTTTTTTTATT-AATTCAAGGTCAATAACTCAGACATTTATTTTCCGGTCTAGTGAGTT-AAAAAACCTATCT-AGACTCTTAAAGTTATATGATA-ACTGGTGTATAAGTTCGGCTGATAATAAACAA-TGATTGAAAA--CAA--ATACCAGACTACACAC------------------ATTT---AC-AA--AAAGGGCCATAACGC--------TT-AT-G-TCTGATTTG--------TTGAGAAGTTGCCC-AAGAATCT--A-------TATATCTCA-------TGCGTACGCTC-GT--AATTTACAATGAAAAATC--AGA--GTGCTTAATAGAGTACACACAAggccataacgcttatgtctgatttgttgagaagttgcccaagaatctatatatctcatgcgtacgctcgtaatttacaatgaaaaatcagagtgcttaatagagtacacacaa
gi|9 : atatataaatattgtctaagactaaccatggtcaaatgcttacatgagctattcaagtgctaTCTGACATTTTTTATCTGATTTGTGAAGTTCGAAGAAC--ATTT-GAGAT-CTTATTGTTA---T--------TTAA-CTAC--TACCTTAGTTTGGT--------------T--AAAGTGCAGATGCCAA--AATGCACTTAA--G-TCCAAACGATGCTCATATTTTTTTAATGATTCTGGGTTCATA------------AATAATCCAGTTTGGCTAGTCTTAGTACTTGAC-----------TGCT---TAT-ATAAATTCTCTGTA-A-GTTTGG-TCAAGAT--TCAGTGA---AAAAT--GC---
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATGCTCAAGTTAATGAGCAGACATTTTTGATTTTGGCAATTTTGAGTAATCAAGTCAAGGGACATAATCTGAACTGGTTGATTATGGAACTTAACCTTAATATTATAATCCTACACATACTGATGAATTTAGTTAATATCCAAGTAGAAATACTCTTATTGAGTAGACACCGAATTTCATCTGACCACCCATA
Unaligned ( gi|14 ): AAGGGTCAAAACTCCATCAGAACAAGTCAGTCGGAATCTTAATATCACAGGCACATATTCAGACCATGAACTTGCTCTAGAACAAGTTTCATTTGAATCGCGTTCGAACTTTGGGAGAAG
Unaligned ( gi|16 ): CACGCTCAGACATTGTACTTGCTAAAAGGCAATCTTCATTTGTATTGGTTTAAAACTGTGGGAAGAGTTG
Unaligned ( gi|18 ): TTATCGGATGTGGCCAATTCAATAACTTATTCAAGGTATTATTGTTAT