lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1111 1111111111111111 44444444444444444444444444444444 1 1 11 33333333333333333333333333333 11111111 1 1 3333333333333
lowQualScore : 5 0 2 1 4 8 7 1 4 99999999 2 2 2 1 6666 2 5555555555555555 77777777777777777777777777777777 4 2 7 6666 2 3 00 11111111111111111111111111111 00000000 2 3 2 5 7 1111111111111 55 3 99999 4 8888 4 8888
lowQualScore : . . . . . . . . . ........ . . . . .... . ................ ................................ . . . .... . . .. ............................. ........ . . . . . ............. .. . ..... . .... . ....
lowQualScore : 0 1 0 1 3 9 0 2 0 11111111 5 5 5 0 4444 9 3333333333333333 22222222222222222222222222222222 0 9 9 1111 5 3 77 33333333333333333333333333333 44444444 9 9 9 0 0 4444444444444 00 6 11111 0 5555 0 5555
consensus : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATATTAATTAGTTAAAT-CAACTTG-----------TATGTGTGT----------GTGT------------------TTATACAGCACATGGA-TAAAGAG----ACGTTCTACATTTGTATTCATACCCTGGACGCAG-AAAGTGTATTGACGA--------------TCACT-ATCGCCAGCGA--------C-AACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGTATAAAAACAA------------A--TTG-TTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
Reference ( gi|5 ) : CAAATAGTTTATTTCGGCA-TATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGACA-GTTACAACAAATGTGAGAAGTGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATATTAGTTTGTTAAAT-CAACTTG-----------TATGCGTGT----------GTGT------------------TTATACATCACATGGA-TAACGAG----ACGTTCTACATTTGTATTCATACCCTGGACGCAA-AAAGTGTATTGACGA--------------T--------------GA--------C-AACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCCGTCAATGCCATTGTTTGTAGCATTATATTATCATAGGCCAGAGTATAAAAACAC------------A--TTG-TTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|7 : AACAGTTTATTTCGGCA-TATGGACATACATGTTTGTCGCCTTGACATATGTATAGGTGGCAAGTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAATCTA--------ACATCTA-ATATAATTGATTC-ATCAAAC-TAAATATATCAATAAGTTAAAT-CAACTTG-----------TA----TGT----------GTAC------------------TTATACAGCACATGGATTAAAAAA----ACGTTCTACATTTGTATTCATACCCTGGACGCAT-AAAGTGTATTGACGA--------------TCACTTATCGCCAGCGA--------C-AACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCAGTCAATGCCGTTGTTTGTAGCATTATAATATCATAGGCCAGTGTATAAAAACAA------------A--TTG-TTTGAAG-----TTCACA
gi|2 : aattcAATAGTTTATTTCGGCA-TTTGAACATACATGTCCGTCGCCTTGGCATATGTATAGGCGGCG-GTTACAACAAATGTGATAAGAGCATGATATAATCAAGTAATGTATAA-TATAAACCTG--------ACAT-TGTATA-AA-TGATTC-ATCAAAA-TAAATA-AATA-------AAAT-TATATTG-------------TGTGTGT----------GTGT------------------TTATACAGCACATGGA-TAATGAG----AAAATCTTCATTTGTATTCATACCCTGG-CCCAAGAAAGTGTATTGACGA--------------T--------------CAATAATCACC-ATTTTAATGTAATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTGGTAGCAATATAATATCATAGGCCAAAGTA-AAAAAAACAATTTGTTTGAAA--TTG-TTTGAAA-----TTCACTTTTAAAACA-TTTATC----AAATTCT-AAGAAATTAATAAATTG
gi|11 : aatttAATAGTTTATTTCG-CA-TACGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGTG-GTTACAACAAATGTGAGAACAGCGTAATATAATCAAGTAATGTACAA-TATAAACTTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATACTAATAAGTGTAAT-CAACTTG-----------TATGTGTGTGTGTGTGTTAGTGT------------------TTATACAGAACATGGA-CAAAGAG----ACGTTCTACATTTGTATTCATATCATGGACGCAG-AAAGTGTATTGACGATCAATAATGGCCAGT--------------GA--------C-AACTTATTGTAATCAT-CCAAAAGCAAGGCACGGCTAGCGGTCAATGCCATTGTTTATAGCATTATAtctattaagttctattttcattaggtctcttatttgct
gi|1 : ttcAATAGTTTATTGTGGCC-AATGAACATACAT-TTCGTCTCAATGACATATTTATAGGCGGCG-GTTACAACAAATGTTAGTAGAGCATGATATAATCAAATAATGTACAA-TATAAACCTA--------CCAT-AAT-TATAAGTAATTC-ATCAAAA-TAGATAAATTAATTAATTAAAT-TTAATTGNNNNNNNNNNNNNNNNNNNN----------NNNN------------------NNNNNNNNCACATGAA-TAA--A-------GTTGTACATTTG------TACCCTGGCCGCAG-AAAGTGTCTCGCCAG--------------T--------------GA--------C-AACTTATTGTAATCAC-ACAAAAGCGAGACATGTCTAGCGAGCAATGCCATT-TTGGAAGCAATATGATGTCATAGGCCAGAGTATAAAAA-AC------------AATTTG-TTTAAAA-----TTAACTTTTAAAACA-TTTATCTGATAAATTATCAATA----AAa
gi|13 : cAATAGTTTATTTCGGCA-AATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGGCAAGTTACAACAAATATGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAA-TAAATATATTAATTATTTAAAT-CAACTgtactattatcatacgtataatatgtctaagtaaatatattttgtaagtttacatattacaccagcttgtttagaccttaacaat
gi|19 : tcAATCGTTTATCTCGGCA-TATAAACATACATGTTCTTCATCTTGATATATGTATAGGTTGCG-GTAACAAGACATGTGAAAAGAACATGATATGATAAAG----ATACGATTATAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagcacatggata
gi|18 : tattcAGTTTAATTTGGCA-TATGAACAAACATG-------------CATATTTCTAGGCGGCA-GTTAAAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAATTAA--------ACAT---TATATAAGTAATTC-ATCAACA-T
gi|16 : AGTTTATTTCGGCAATATGAACATGAATGGTCGTCGCATTGAAATAT----AGGCGGCG-GTTACAACAAACCTGACTAAAACATTGTATA------TAATACCCAG-TACATATCTATTGTTGTCA-AT-TAGAAGTAATTG-TTCAAACGAGT-TAAACAAAGT-CTTTG-TAAAT-GAACTTG-----------TAcactaatttcattgttttcaattat
gi|13 : aatcaTTGCCGCCTATACATATGTCAAGGCGACA-
gi|10 : tcaatagtttatttcggcaaatgaacatacatgttAAGTAATGTACTC-AACAAACCTA--------ACAT-TTTATATAATTGATTC-ATCAAAA-TAAGTATATTAATTAGTTAAAT-CAACGTG-----------TATGTGTGT----------GTGTATGTATGTGTGTGT----TTATACAGCACATGGA-TAAAGAG----ACGTTCTACATTTGTATTCATACCCTGGGCGCAG-AAAGTGTATTGACGA--------------TCACTAATCGCCAGCGA--------C-AACTTATTGTTATC---------------CATGGCTAGCGGTCAATGTCATTGTTTGTAGCATTATAATATCATATGCCAGAGTATAAAAACAA------------A--TTG-TTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGgttacaacaaatatgagaagagcatgatataatcaagtattgtacaatataaacctaacatcttatataattgattcatcaaaataaatatattaattatttaaatcaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatacagcacatggata
gi|21 : AAGTATTGTACAA-TAAAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAACTAAATATATTAtctattaagtactattatcattacgtctctta
gi|4 : ACCTT--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATATTAATTAATTAAAT-CAACTTG-----------TATGTGTGTATGTGT----GTGT------------------TAATATAGCACATGGA-TAAGGAG----ACGTTCTACATTTGTATTCATACCCTGGACGCAG-AAAGTGTATTGACGA--------------TCACTAATCGCCAGCGA--------C-AACTTATTGTTATCAT-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTGTAATATCATAGGCCAGAGTATAAAAACAA------------A--TTG-TTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|6 : ATCTA--------ACAT-TATATATAATTTATTC-ATCAAAA-TAAATATAA-AATTAATTATAT-CAACT-G-----------TATGAGTGT----------GTGT------------------GTATACAGCACATGGA-TAAAGAG----ACGTTCTACATCTTTATTCATACCCTGGACGCAG-AAAGTGTATTGACGA--------------TCACTAATCGCCAGCGA--------C-AACTTATTGTTATCAC-ACAATAGCGAGACAAGGCTAGCGGTCAATGCCATTGTTTGCAGCATTATAATATTATAGGCCAGAGTATAAAAACAA------------A--TTA-TTTGAAG-----TTCACATTTATAACA-TTTATC----AGATTCT-AATA----AATAAACTGtctattaagtactattatcattacgtctcttatttgctaaataaatatattttgcaagtttacatattacaccagcttgttaaaaagtcatcaatgatatgaatatctgttttaatagtatgt
gi|3 : ACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATATTAATTAGTCAA-T-CAACTTG-----------TANNNNNNN----------NNNNNNNNNNNNNNNNNNNNNNTTATACAGCACATGGA-TAAAGAG----ACGTTCTACATTTGTATTCATACCTTGGACGCAG-AAAGTGTATTGACGA--------------TCACTAATCGCCAGCGA--------C-ATCTTATTGTTATCAC-ACAATAGTGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGAATAAAAACAA------------A--TTG-TTTGAAG-----TTCACATTTAAAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtacttgtatgattacgtctcttatttgcttaataactacattttgcaagtttcatattacaccagcttgtttagagattaacaat
gi|12 : ACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATATTAATTAGTTAAAT-CAACTTG-----------TATGTGTGT----------GTGT------------------TTATACAGCACATGGA-TAAAGAG----ACGTTCTA-------------ACCATGGACGCAG-AAAATTTATTGACGA--------------TCGCTAATCGCCAGCGA--------C-AACTTAT------CAC-ACAATAGCGAGACACGGCTAGCGGCCAATGCCATTGTGTGTAGCATTATAATATCATAGGTCAGAGTATAAAAACAA------------T--TTG-TTGGAAG-----TTTACATTTATAACA-TTCATC----AAATTAT-AATA----AATAAATTGtctattaagtactattatcataacgtctcttatttactaaataaatatattatgcaagtttacatattaaatcagcttgtttagagattaacaatgatatgaatttctgttttatgtatgt
gi|9 : ACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TCA-TATTTCCATTAATTAAAT-CAACTT--------------------------------TG----------------------------ATATGGA-TAAAGAG----ACGTTCAACATTTGTATTCATACCATGGCCGCAG-AAAATGTATTGCCAG--------------A--------------GA--------C-AACTTATTGTAGTCAC-GCAATGGCGAGACACGACTAGCGGCCAATGTCATTGTTTACAGCAATATAATACCATAGGCCAGAGTATAAAAACAA------------A--TTG-TTTGAAT-----TTCACATTTATAACACTTTATC----AAATTCT-AATA----GATACATTG
gi|14 : ACTTA--------ACAT-TATATATAATTGATTC-ATCGAAA-TAAATATATTAATTCGTTAAAT-CAACTTG-----------TATGTGTGT----------G---------------------TTATACAGCACATGGA-TAAAGAG----ACGTTCTACATTTGCATTCATACCCTGGCCGCAG-AAAGAGTATTAACGA--------------T--------------CA--------CTAATTGATTATAATCTC-ACAATAGCCAGACACGACTAGtctattaagtactattattattacgtcccttgtttgctaagtaaatatattttgcaagtttacatattacgccagcttctttagaggttaacaa
gi|17 : CTA--------ACAT-TATATA--AGTGATTC-ATCAAAA-TAAA-A-----------TAGATGCAA------------------GTGTGT----------GTGT------------------TTAAACAGCAAATGGA-TAAATAG----AAGTTCTA---TTG-------GCCC------CAG-AACGTGTATTAACGAGTAATAATCGCCAGC--------------GA--------C-AACTT-TTGGT--------AACAGCGAGACACAGCCAGCGGTCAgg
gi|22 : TGT----------GTGT------------------TTATACAGCACATGGA-TAA-AAGAAAAACGTTCTACATTTGTATTCATA
gi|20 : TATACAGCAAATGGA-TAAAGAG----AAGTTC-------------ATACCCT-GACCCAAGAAAGTGTATTGACGA--------------
gi|15 : --------------GA--------C-AACTTGTTTTAATCAC-ACAATAGCGAGACACAGCTAGTGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGTCAGAGTAATAAAACAA------------A--TTG-TTTGAAG-----TTCACATTTATAACA-TTCATC----AATTTCT-AATA----AATAAATTGgttataatcgccagct
gi|8 : gatcgccagc--------------GG--------C-AACTAATTGTTATTGGGAGAATGGCGAGACACTGCCAGCGATCAATGTCATTGTTGGTAAGAACATAAAATCAAAGATTAGAGAATAAATACA-------------A--CTACTTTGAAATTAATTTTAAGTTTATAACG-TTTATC----CAATTCT-GATA----tctattaagtactattaa
Alignments
lowQualScore : 2222222222222222222222 333333333333333333333333333333333333333333333333 11111111111 22222 1111111111
lowQualScore : 4 1 8 0 3 88888888 2 2 2 2 5 2 2222222222222222222222 5555 000000000000000000000000000000000000000000000000 11111111111 2 444 2 2 2 2 2 0 11111 1 4 2 3 3 4444444444 88888 3 7777 3 7777
lowQualScore : . . . . . ........ . . . . . . ...................... .... ................................................ ........... . ... . . . . . . ..... . . . . . .......... ..... . .... . ....
lowQualScore : 4 1 9 3 6 55555555 4 2 2 4 9 5 2222222222222222222222 3333 666666666666666666666666666666666666666666666666 22222222222 4 444 5 6 7 7 7 5 55555 4 5 7 3 3 6666666666 33333 6 7777 6 7777
consensus : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-A-TCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
Reference ( family-2842 ) : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-A-TCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|1 : AATAGTTTATTGTGGCC-AATGAACATACAT-TTCGTCTCAATGACATATTTATAGGCGGCG-GTTACAACAAATGTTAGTAGAGCATGATATAATCAAATAATGTACAA-TATAAACCTA--------CCAT-AAT-TATAAGTAATTC-ATCAAAA-TAGATAAAT-TAATTAATTAAAT-TTAAT----------------------TGNNNNNN----N--------------NN----------NNNN------------------NNNNNNNNNNNNNNNNNNNCACATGAAT-AA---AG------TTGTACATTTG------TACCCTGGCCGC-AGAAAGTGT------C-----------TCGCCAGTGACAACTTATTGTAATCAC-ACAAAAGCGAGACATGTCTAGCGAGCAATGCCATT-TTGGAAGCAATATGATGTCATAGGCCAGAGT-ATAAAAAAC----------AATTTGTTTAAAA-----TTAACTTTTAAAACA-TTTATCTGATAAATTATCAATA----AA
gi|10 : cAAGTAATGTACTC-AACAAACCTA--------ACAT-TTTATATAATTGATTC-ATCAAAA-TAAGTATAT-TAATTAGTTAAAT-CAACG----------------------TGTATGTG----TGTGTGTATGTATGTGT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGGCGC-AGAAAGTGTATT-GACGA-TCACTAA-TCGCCAGCGACAACTTATTGTTATC---------------CATGGCTAGCGGTCAATGTCATTGTTTGTAGCATTATAATATCATATGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGgtactattatcatacgtataatatgtctaagtaaatatattttgtaagtttacatattacaccagcttgtttagaccttaacaat
gi|11 : AATAGTTTATTTCG-CA-TACGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGTG-GTTACAACAAATGTGAGAACAGCGTAATATAATCAAGTAATGTACAA-TATAAACTTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAC-TAATAAGTGTAAT-CAACT----------------------TGTATGTG----T--------------GTGTGTGTGTTAGTGT------------------TTATACAG-----------AACATGGAC-AA---AGAGAC-GTTCTACATTTGTATTCATATCATGGACGC-AGAAAGTGTATT-GACGA-TCAATAA-TGGCCAGTGACAACTTATTGTAATCAT-CCAAAAGCAAGGCACGGCTAGCGGTCAATGCCATTGTTTATAGCATTATAAtctattaagtactattatcattacgtctctta
gi|12 : ttcACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTA-------------ACCATGGACGC-AGAAAATTTATT-GACGA-TCGCT-AATCGCCAGCGACAACTTAT------CAC-ACAATAGCGAGACACGGCTAGCGGCCAATGCCATTGTGTGTAGCATTATAATATCATAGGTCAGAGT-AT-AAAAAC----------AATTTGTTGGAAG-----TTTACATTTATAACA-TTCATC----AAATTAT-AATA----AATAAATTG
gi|13 : AATAGTTTATTTCGGCA-AATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGGCAAGTTACAACAAATATGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTATTTAAAT-CAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----N--------------NN----------NNNN------------------TTATACAG-----------CACATGGAT-A
gi|14 : tcACTTA--------ACAT-TATATATAATTGATTC-ATCGAAA-TAAATATAT-TAATTCGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GT---------------------TATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGCATTCATACCCTGGCCGC-AGAAAGAGTATT-AACGA-TCACT-A-------------ATTGATTATAATCTC-ACAATAGCCAGACACGACTAG
gi|15 : -A-TCGCCAGCGACAACTTGTTTTAATCAC-ACAATAGCGAGACACAGCTAGTGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGTCAGAGT-AA-TAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AATTTCT-AATA----AATAAATTGgg
gi|16 : gAGTTTATTTCGGCAATATGAACATGAATGGTCGTCGCATTGAAATAT----AGGCGGCG-GTTACAACAAACCTGACTAAAACATTGTATA------TAATACCCAG-TACATATCTATTGTTGTCA-AT-TAGAAGTAATTG-TTCAAACGAGT-TAAACAAAG-TCTTTG--TAAAT-GAACT----------------------TGTAtctattaagtactattaa
gi|17 : aatcaCTA--------ACAT-TATATA--AGTGATTC-ATCAAAA-TAAA-----------A--TAGATGCAA-----------------------------GTG----T--------------GT----------GTGT------------------TTAAACAG-----------CAAATGGAT-AA---ATAGAA-GTTCTA---TTG-------GCCC------C-AGAACGTGTATT-AACGA-GTAAT-AATCGCCAGCGACAACTTTTGGT---------AACAGCGAGACACAGCCAGCGGTCA
gi|18 : AGTTTAATTTGGCA-TATGAACAAACATG-------------CATATTTCTAGGCGGCA-GTTAAAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAATTAA--------ACAT---TATATAAGTAATTC-ATCAACA-T
gi|19 : AATCGTTTATCTCGGCA-TATAAACATACATGTTCTTCATCTTGATATATGTATAGGTTGCG-GTAACAAGACATGTGAAAAGAACATGATATGATAAAG----ATACGATTATAAAcactaatttcattgttttcaattat
gi|2 : tattcAATAGTTTATTTCGGCA-TTTGAACATACATGTCCGTCGCCTTGGCATATGTATAGGCGGCG-GTTACAACAAATGTGATAAGAGCATGATATAATCAAGTAATGTATAA-TATAAACCTG--------ACAT-TGTATA-AA-TGATTC-ATCAAAA-TAAATA-AA-TAA--AATTATAT------------------------------TGTGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---TGAGAA-AATCTTCATTTGTATTCATACCCTGGCCCA-AGAAAGTGTATT-GACGA-TCAATAA-TCACCAT------TTTAATGTAATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTGGTAGCAATATAATATCATAGGCCAAAGTAAA-AAAAACAATTTGTTTGAAATTGTTTGAAA-----TTCACTTTTAAAACA-TTTATC----AAATTCT-AAGAAATTAATAAATTG
gi|20 : aatttTATACAG-----------CAAATGGAT-AA---AGAGAA-GTTC-------------ATACCCT-GACCCAAGAAAGTGTATT-GACGAGTTATA-A-TCGCCAGCtctattaagttctattttcattaggtctcttatttgct
gi|21 : AAGTATTGTACAA-TAAAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAACTAAATATAT-TAt
gi|22 : ----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AAAAGAAAAAC-GTTCTACATTTGTATTCATA
gi|3 : ACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTCAA-T-CAACT----------------------TGTANNNN----N--------------NN----------NNNNNNNNNNNNNNNNNNNNNNTTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCTTGGACGC-AGAAAGTGTATT-GACGA-TCACT-AATCGCCAGCGACATCTTATTGTTATCAC-ACAATAGTGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGA-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTAAAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|4 : ACCTT--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAATTAAAT-CAACT----------------------TGTATGTG----T--------------GTATGTGT----GTGT------------------TAATATAG-----------CACATGGAT-AA---GGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-AATCGCCAGCGACAACTTATTGTTATCAT-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTGTAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtactattatcataacgtctcttatttactaaataaatatattatgcaagtttacatattaaatcagcttgtttagagattaacaatgatatgaatttctgttttatgtatgt
gi|5 : AATAGTTTATTTCGGCA-TATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGACA-GTTACAACAAATGTGAGAAGTGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAGTTTGTTAAAT-CAACT----------------------TGTATGCG----T--------------GT----------GTGT------------------TTATACAT-----------CACATGGAT-AA---CGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AAAAAGTGTATT-GACGA-T---------------GACAACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCCGTCAATGCCATTGTTTGTAGCATTATATTATCATAGGCCAGAGT-AT-AAAAAC----------ACATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtactattatcattacgtctcttatttgctaaataaatatattttgcaagtttacatattacaccagcttgttaaaaagtcatcaatgatatgaatatctgttttaatagtatgt
gi|6 : caATCTA--------ACAT-TATATATAATTTATTC-ATCAAAA-TAAATATAA--AATTAATTATAT-CAACT-----------------------GTATGAG----T--------------GT----------GTGT------------------GTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATCTTTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-AATCGCCAGCGACAACTTATTGTTATCAC-ACAATAGCGAGACAAGGCTAGCGGTCAATGCCATTGTTTGCAGCATTATAATATTATAGGCCAGAGT-AT-AAAAAC----------AAATTATTTGAAG-----TTCACATTTATAACA-TTTATC----AGATTCT-AATA----AATAAACTG
gi|7 : AACAGTTTATTTCGGCA-TATGGACATACATGTTTGTCGCCTTGACATATGTATAGGTGGCAAGTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAATCTA--------ACATCTA-ATATAATTGATTC-ATCAAAC-TAAATATAT-CAATAAGTTAAAT-CAACT----------------------TGTATGTG----T--------------AC--------------------------------TTATACAG-----------CACATGGATTAA---AAAAAC-GTTCTACATTTGTATTCATACCCTGGACGC-ATAAAGTGTATT-GACGA-TCACTTA-TCGCCAGCGACAACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCAGTCAATGCCGTTGTTTGTAGCATTATAATATCATAGGCCAGTGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACAtctattaagtacttgtatgattacgtctcttatttgcttaataactacattttgcaagtttcatattacaccagcttgtttagagattaacaat
gi|8 : aattcTTC-ATTACAT-AAAATGTACATACTTA--TAAAA-TAA------------------------TGCATTTGAATAT--------------TT----------ATGT------------------CTACAAAA-----------TACGCGG-T-AA---AGAGATTGTT----ATTT---TTCATTTTTT--AT-T-ACAAGGTGTATCAGA--A-TAA---A-TTG-----GGCAACTAATTGTTATTGGGAGAATGGCGAGACACTGCCAGCGATCAATGTCATTGTTGGTAAGAACATAAAATCAAAGATTAGAGA-AT-AAATAC----------AACTACTTTGAAATTAATTTTAAGTTTATAACG-TTTATC----CAATTCT-GATA----
gi|9 : ttatgACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TCA-TATTT-CCATTAATTAAAT-CAACT----------------------T---------------------------------------TG---------------------------------------ATATGGAT-AA---AGAGAC-GTTCAACATTTGTATTCATACCATGGCCGC-AGAAAATGTATT-G----------------CCAGAGACAACTTATTGTAGTCAC-GCAATGGCGAGACACGACTAGCGGCCAATGTCATTGTTTACAGCAATATAATACCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAT-----TTCACATTTATAACACTTTATC----AAATTCT-AATA----GATACATTGctttctattactagtatcaacaactcttaaatgctaagaaaaaatattttgcaagtttatatattacaccagcttggctagagtttaccaatgaatttctgttttgt
Alignments
lowQualScore : 2222222222222222222222 333333333333333333333333333333333333333333333333 11111111111 22222 1111111111
lowQualScore : 4 1 8 0 3 88888888 2 2 2 2 5 2 2222222222222222222222 5555 000000000000000000000000000000000000000000000000 11111111111 2 444 2 2 2 2 2 0 11111 1 4 2 3 3 4444444444 88888 3 7777 3 7777
lowQualScore : . . . . . ........ . . . . . . ...................... .... ................................................ ........... . ... . . . . . . ..... . . . . . .......... ..... . .... . ....
lowQualScore : 4 1 9 3 6 55555555 4 2 2 4 9 5 2222222222222222222222 3333 666666666666666666666666666666666666666666666666 22222222222 4 444 5 6 7 7 7 5 55555 4 5 7 3 3 6666666666 33333 6 7777 6 7777
consensus : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-A-TCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
Reference ( family-2842 ) : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-A-TCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|1 : AATAGTTTATTGTGGCC-AATGAACATACAT-TTCGTCTCAATGACATATTTATAGGCGGCG-GTTACAACAAATGTTAGTAGAGCATGATATAATCAAATAATGTACAA-TATAAACCTA--------CCAT-AAT-TATAAGTAATTC-ATCAAAA-TAGATAAAT-TAATTAATTAAAT-TTAAT----------------------TGNNNNNN----N--------------NN----------NNNN------------------NNNNNNNNNNNNNNNNNNNCACATGAAT-AA---AG------TTGTACATTTG------TACCCTGGCCGC-AGAAAGTGT------C-----------TCGCCAGTGACAACTTATTGTAATCAC-ACAAAAGCGAGACATGTCTAGCGAGCAATGCCATT-TTGGAAGCAATATGATGTCATAGGCCAGAGT-ATAAAAAAC----------AATTTGTTTAAAA-----TTAACTTTTAAAACA-TTTATCTGATAAATTATCAATA----AA
gi|10 : cAAGTAATGTACTC-AACAAACCTA--------ACAT-TTTATATAATTGATTC-ATCAAAA-TAAGTATAT-TAATTAGTTAAAT-CAACG----------------------TGTATGTG----TGTGTGTATGTATGTGT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGGCGC-AGAAAGTGTATT-GACGA-TCACTAA-TCGCCAGCGACAACTTATTGTTATC---------------CATGGCTAGCGGTCAATGTCATTGTTTGTAGCATTATAATATCATATGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGgtactattatcatacgtataatatgtctaagtaaatatattttgtaagtttacatattacaccagcttgtttagaccttaacaat
gi|11 : AATAGTTTATTTCG-CA-TACGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGTG-GTTACAACAAATGTGAGAACAGCGTAATATAATCAAGTAATGTACAA-TATAAACTTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAC-TAATAAGTGTAAT-CAACT----------------------TGTATGTG----T--------------GTGTGTGTGTTAGTGT------------------TTATACAG-----------AACATGGAC-AA---AGAGAC-GTTCTACATTTGTATTCATATCATGGACGC-AGAAAGTGTATT-GACGA-TCAATAA-TGGCCAGTGACAACTTATTGTAATCAT-CCAAAAGCAAGGCACGGCTAGCGGTCAATGCCATTGTTTATAGCATTATAAtctattaagtactattatcattacgtctctta
gi|12 : ttcACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTA-------------ACCATGGACGC-AGAAAATTTATT-GACGA-TCGCT-AATCGCCAGCGACAACTTAT------CAC-ACAATAGCGAGACACGGCTAGCGGCCAATGCCATTGTGTGTAGCATTATAATATCATAGGTCAGAGT-AT-AAAAAC----------AATTTGTTGGAAG-----TTTACATTTATAACA-TTCATC----AAATTAT-AATA----AATAAATTG
gi|13 : AATAGTTTATTTCGGCA-AATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGGCAAGTTACAACAAATATGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTATTTAAAT-CAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----N--------------NN----------NNNN------------------TTATACAG-----------CACATGGAT-A
gi|14 : tcACTTA--------ACAT-TATATATAATTGATTC-ATCGAAA-TAAATATAT-TAATTCGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GT---------------------TATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGCATTCATACCCTGGCCGC-AGAAAGAGTATT-AACGA-TCACT-A-------------ATTGATTATAATCTC-ACAATAGCCAGACACGACTAG
gi|15 : -A-TCGCCAGCGACAACTTGTTTTAATCAC-ACAATAGCGAGACACAGCTAGTGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGTCAGAGT-AA-TAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AATTTCT-AATA----AATAAATTGgg
gi|16 : gAGTTTATTTCGGCAATATGAACATGAATGGTCGTCGCATTGAAATAT----AGGCGGCG-GTTACAACAAACCTGACTAAAACATTGTATA------TAATACCCAG-TACATATCTATTGTTGTCA-AT-TAGAAGTAATTG-TTCAAACGAGT-TAAACAAAG-TCTTTG--TAAAT-GAACT----------------------TGTAtctattaagtactattaa
gi|17 : aatcaCTA--------ACAT-TATATA--AGTGATTC-ATCAAAA-TAAA-----------A--TAGATGCAA-----------------------------GTG----T--------------GT----------GTGT------------------TTAAACAG-----------CAAATGGAT-AA---ATAGAA-GTTCTA---TTG-------GCCC------C-AGAACGTGTATT-AACGA-GTAAT-AATCGCCAGCGACAACTTTTGGT---------AACAGCGAGACACAGCCAGCGGTCA
gi|18 : AGTTTAATTTGGCA-TATGAACAAACATG-------------CATATTTCTAGGCGGCA-GTTAAAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAATTAA--------ACAT---TATATAAGTAATTC-ATCAACA-T
gi|19 : AATCGTTTATCTCGGCA-TATAAACATACATGTTCTTCATCTTGATATATGTATAGGTTGCG-GTAACAAGACATGTGAAAAGAACATGATATGATAAAG----ATACGATTATAAAcactaatttcattgttttcaattat
gi|2 : tattcAATAGTTTATTTCGGCA-TTTGAACATACATGTCCGTCGCCTTGGCATATGTATAGGCGGCG-GTTACAACAAATGTGATAAGAGCATGATATAATCAAGTAATGTATAA-TATAAACCTG--------ACAT-TGTATA-AA-TGATTC-ATCAAAA-TAAATA-AA-TAA--AATTATAT------------------------------TGTGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---TGAGAA-AATCTTCATTTGTATTCATACCCTGGCCCA-AGAAAGTGTATT-GACGA-TCAATAA-TCACCAT------TTTAATGTAATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTGGTAGCAATATAATATCATAGGCCAAAGTAAA-AAAAACAATTTGTTTGAAATTGTTTGAAA-----TTCACTTTTAAAACA-TTTATC----AAATTCT-AAGAAATTAATAAATTG
gi|20 : aatttTATACAG-----------CAAATGGAT-AA---AGAGAA-GTTC-------------ATACCCT-GACCCAAGAAAGTGTATT-GACGAGTTATA-A-TCGCCAGCtctattaagttctattttcattaggtctcttatttgct
gi|21 : AAGTATTGTACAA-TAAAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAACTAAATATAT-TAt
gi|22 : ----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AAAAGAAAAAC-GTTCTACATTTGTATTCATA
gi|3 : ACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTCAA-T-CAACT----------------------TGTANNNN----N--------------NN----------NNNNNNNNNNNNNNNNNNNNNNTTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCTTGGACGC-AGAAAGTGTATT-GACGA-TCACT-AATCGCCAGCGACATCTTATTGTTATCAC-ACAATAGTGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGA-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTAAAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|4 : ACCTT--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAATTAAAT-CAACT----------------------TGTATGTG----T--------------GTATGTGT----GTGT------------------TAATATAG-----------CACATGGAT-AA---GGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-AATCGCCAGCGACAACTTATTGTTATCAT-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTGTAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtactattatcataacgtctcttatttactaaataaatatattatgcaagtttacatattaaatcagcttgtttagagattaacaatgatatgaatttctgttttatgtatgt
gi|5 : AATAGTTTATTTCGGCA-TATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGACA-GTTACAACAAATGTGAGAAGTGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAGTTTGTTAAAT-CAACT----------------------TGTATGCG----T--------------GT----------GTGT------------------TTATACAT-----------CACATGGAT-AA---CGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AAAAAGTGTATT-GACGA-T---------------GACAACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCCGTCAATGCCATTGTTTGTAGCATTATATTATCATAGGCCAGAGT-AT-AAAAAC----------ACATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtactattatcattacgtctcttatttgctaaataaatatattttgcaagtttacatattacaccagcttgttaaaaagtcatcaatgatatgaatatctgttttaatagtatgt
gi|6 : caATCTA--------ACAT-TATATATAATTTATTC-ATCAAAA-TAAATATAA--AATTAATTATAT-CAACT-----------------------GTATGAG----T--------------GT----------GTGT------------------GTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATCTTTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-AATCGCCAGCGACAACTTATTGTTATCAC-ACAATAGCGAGACAAGGCTAGCGGTCAATGCCATTGTTTGCAGCATTATAATATTATAGGCCAGAGT-AT-AAAAAC----------AAATTATTTGAAG-----TTCACATTTATAACA-TTTATC----AGATTCT-AATA----AATAAACTG
gi|7 : AACAGTTTATTTCGGCA-TATGGACATACATGTTTGTCGCCTTGACATATGTATAGGTGGCAAGTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAATCTA--------ACATCTA-ATATAATTGATTC-ATCAAAC-TAAATATAT-CAATAAGTTAAAT-CAACT----------------------TGTATGTG----T--------------AC--------------------------------TTATACAG-----------CACATGGATTAA---AAAAAC-GTTCTACATTTGTATTCATACCCTGGACGC-ATAAAGTGTATT-GACGA-TCACTTA-TCGCCAGCGACAACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCAGTCAATGCCGTTGTTTGTAGCATTATAATATCATAGGCCAGTGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACAtctattaagtacttgtatgattacgtctcttatttgcttaataactacattttgcaagtttcatattacaccagcttgtttagagattaacaat
gi|8 : aattcTTC-ATTACAT-AAAATGTACATACTTA--TAAAA-TAA------------------------TGCATTTGAATAT--------------TT----------ATGT------------------CTACAAAA-----------TACGCGG-T-AA---AGAGATTGTT----ATTT---TTCATTTTTT--AT-T-ACAAGGTGTATCAGA--A-TAA---A-TTG-----GGCAACTAATTGTTATTGGGAGAATGGCGAGACACTGCCAGCGATCAATGTCATTGTTGGTAAGAACATAAAATCAAAGATTAGAGA-AT-AAATAC----------AACTACTTTGAAATTAATTTTAAGTTTATAACG-TTTATC----CAATTCT-GATA----
gi|9 : ttatgACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TCA-TATTT-CCATTAATTAAAT-CAACT----------------------T---------------------------------------TG---------------------------------------ATATGGAT-AA---AGAGAC-GTTCAACATTTGTATTCATACCATGGCCGC-AGAAAATGTATT-G----------------CCAGAGACAACTTATTGTAGTCAC-GCAATGGCGAGACACGACTAGCGGCCAATGTCATTGTTTACAGCAATATAATACCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAT-----TTCACATTTATAACACTTTATC----AAATTCT-AATA----GATACATTGctttctattactagtatcaacaactcttaaatgctaagaaaaaatattttgcaagtttatatattacaccagcttggctagagtttaccaatgaatttctgttttgt
blockSeqs : A G A T TTGTTGTC C A C A G G NNNNNNNNNNNNNNNNNNNNNN AATA NNNNNNNNNNNNNNNNNNNNNNNN . T AAG T T A A G CTAA C T G A . AATTTGTTTG TTAAT C . . AATT
blockSeqs : . G A . . . . . . G . . . GTGTGTATGTATGTGTGTGT . . . . T . . . ATAA T A . . . . . . . . .
blockSeqs : . T . . . . . . . G . . . GTGTGTGTGTTAGTGT . . . . C . . . CTAA C A . . . . . . . . .
blockSeqs : . G . . . . . . . T . . . GTATGTGTGTGT . . . . T . . . ATAA C A . . . . . . . . .
blockSeqs : . G . . . . . . . G . . . GTGTGT . . . . T . . . ATAA C A . . . . . . . . .
blockSeqs : . G . . . . . . . A . . . NNNNNN . . . . T . . . CTAA C T . . . . . . . . .
blockSeqs : . G . . . . . . . G . . . GTGTGT . . . . T . . . CTAA C T . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . GTGTGT . . . . T . . . CTAA C T . . . . . . . . .
blockSeqs : . . . . . . G . . . GTGTGT . . . . T . . . CTTA C T . . . . . . . . .
blockSeqs : . . . . . . A . . . GTGTGT . . . . T . . . CTA C T . . . . . . . . .
blockSeqs : . . . . . G . . . GTGTGT . . . . T . . . TAA A T . . . . .
blockSeqs : . . . . . A . . . TTATGT . . . . . . . . A . A .
blockSeqs : . . . . . . . . . GTGT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AC . . . . . . . . . . . .
blockSeqs : . . . . . . . . . TG . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : *********** CTAA* ****
originalCons : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACT-A-TCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
finalCons : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATT-GACGA-TCACTAA-TCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
Alignments
lowQualScore : 2222222222222222222222 333333333333333333333333333333333333333333333333 11111111111 1111111111
lowQualScore : 4 1 8 0 3 88888888 2 2 2 2 5 2 2222222222222222222222 5555 000000000000000000000000000000000000000000000000 11111111111 2 444 2 2 2 2 6 1 2 2 3 3 4444444444 88888 3 7777 3 7777
lowQualScore : . . . . . ........ . . . . . . ...................... .... ................................................ ........... . ... . . . . . . . . . . .......... ..... . .... . ....
lowQualScore : 4 1 9 3 6 55555555 4 2 2 4 9 5 2222222222222222222222 3333 666666666666666666666666666666666666666666666666 22222222222 4 444 5 6 7 7 7 4 9 7 3 3 6666666666 33333 6 7777 6 7777
consensus : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATTGACGA-TCACTAATCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
Reference ( family-2842 ) : NNAATAGTTTATTTCGGCA-TATGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGCG-GTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATTGACGA-TCACTAATCGCCAGCGACAACTTATTGTNATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|1 : AATAGTTTATTGTGGCC-AATGAACATACAT-TTCGTCTCAATGACATATTTATAGGCGGCG-GTTACAACAAATGTTAGTAGAGCATGATATAATCAAATAATGTACAA-TATAAACCTA--------CCAT-AAT-TATAAGTAATTC-ATCAAAA-TAGATAAAT-TAATTAATTAAAT-TTAAT----------------------TGNNNNNN----N--------------NN----------NNNN------------------NNNNNNNNNNNNNNNNNNNCACATGAAT-AA---AG------TTGTACATTTG------TACCCTGGCCGC-AGAAAGTGT-----C----------TCGCCAGTGACAACTTATTGTAATCAC-ACAAAAGCGAGACATGTCTAGCGAGCAATGCCATT-TTGGAAGCAATATGATGTCATAGGCCAGAGT-ATAAAAAAC----------AATTTGTTTAAAA-----TTAACTTTTAAAACA-TTTATCTGATAAATTATCAATA----AA
gi|10 : cAAGTAATGTACTC-AACAAACCTA--------ACAT-TTTATATAATTGATTC-ATCAAAA-TAAGTATAT-TAATTAGTTAAAT-CAACG----------------------TGTATGTG----TGTGTGTATGTATGTGT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCCTGGGCGC-AGAAAGTGTATTGACGA-TCACTAATCGCCAGCGACAACTTATTGTTATC---------------CATGGCTAGCGGTCAATGTCATTGTTTGTAGCATTATAATATCATATGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGgtactattatcatacgtataatatgtctaagtaaatatattttgtaagtttacatattacaccagcttgtttagaccttaacaat
gi|11 : AATAGTTTATTTCG-CA-TACGAACATACATGTTCGTCGCCTTGACATATGTATAGGCGGTG-GTTACAACAAATGTGAGAACAGCGTAATATAATCAAGTAATGTACAA-TATAAACTTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAC-TAATAAGTGTAAT-CAACT----------------------TGTATGTG----T--------------GTGTGTGTGTTAGTGT------------------TTATACAG-----------AACATGGAC-AA---AGAGAC-GTTCTACATTTGTATTCATATCATGGACGC-AGAAAGTGTATTGACGA-TCAATAATGGCCAGTGACAACTTATTGTAATCAT-CCAAAAGCAAGGCACGGCTAGCGGTCAATGCCATTGTTTATAGCATTATAAtctattaagtactattatcattacgtctctta
gi|12 : ttcACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTA-------------ACCATGGACGC-AGAAAATTTATTGACGA-TCGCTAATCGCCAGCGACAACTTAT------CAC-ACAATAGCGAGACACGGCTAGCGGCCAATGCCATTGTGTGTAGCATTATAATATCATAGGTCAGAGT-AT-AAAAAC----------AATTTGTTGGAAG-----TTTACATTTATAACA-TTCATC----AAATTAT-AATA----AATAAATTG
gi|13 : AATAGTTTATTTCGGCA-AATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGGCAAGTTACAACAAATATGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTATTTAAAT-CAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----N--------------NN----------NNNN------------------TTATACAG-----------CACATGGAT-A
gi|14 : tcACTTA--------ACAT-TATATATAATTGATTC-ATCGAAA-TAAATATAT-TAATTCGTTAAAT-CAACT----------------------TGTATGTG----T--------------GT----------GT---------------------TATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGCATTCATACCCTGGCCGC-AGAAAGAGTATTAACGA-TCACTAATTG-------------ATTATAATCTC-ACAATAGCCAGACACGACTAG
gi|15 : ATCGCCAGCGACAACTTGTTTTAATCAC-ACAATAGCGAGACACAGCTAGTGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGTCAGAGT-AA-TAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AATTTCT-AATA----AATAAATTGgg
gi|16 : gAGTTTATTTCGGCAATATGAACATGAATGGTCGTCGCATTGAAATAT----AGGCGGCG-GTTACAACAAACCTGACTAAAACATTGTATA------TAATACCCAG-TACATATCTATTGTTGTCA-AT-TAGAAGTAATTG-TTCAAACGAGT-TAAACAAAG-TCTTTG--TAAAT-GAACT----------------------TGTAtctattaagtactattaa
gi|17 : aatcaCTA--------ACAT-TATATA--AGTGATTC-ATCAAAA-TAAA-----------A--TAGATGCAA-----------------------------GTG----T--------------GT----------GTGT------------------TTAAACAG-----------CAAATGGAT-AA---ATAGAA-GTTCTA---TTG-------GCCC------C-AGAACGTGTATTAACGA-GTAATAATCGCCAGCGACAACTT-TTG--------GTAACAGCGAGACACAGCCAGCGGTCA
gi|18 : AGTTTAATTTGGCA-TATGAACAAACATG-------------CATATTTCTAGGCGGCA-GTTAAAACAAATGTGAGAAGAGCATGATATAATCAAGTAATGTACAA-TATAAATTAA--------ACAT---TATATAAGTAATTC-ATCAACA-T
gi|19 : AATCGTTTATCTCGGCA-TATAAACATACATGTTCTTCATCTTGATATATGTATAGGTTGCG-GTAACAAGACATGTGAAAAGAACATGATATGATAAAG----ATACGATTATAAAcactaatttcattgttttcaattat
gi|2 : tattcAATAGTTTATTTCGGCA-TTTGAACATACATGTCCGTCGCCTTGGCATATGTATAGGCGGCG-GTTACAACAAATGTGATAAGAGCATGATATAATCAAGTAATGTATAA-TATAAACCTG--------ACAT-TGTATA-AA-TGATTC-ATCAAAA-TAAATA-AA-TAA--AATTATAT------------------------------TGTGTG----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AA---TGAGAA-AATCTTCATTTGTATTCATACCCTGGCCCA-AGAAAGTGTATTGACGA-TCAATAATCACCAT------TTTAATGTAATCAC-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTGGTAGCAATATAATATCATAGGCCAAAGTAAA-AAAAACAATTTGTTTGAAATTGTTTGAAA-----TTCACTTTTAAAACA-TTTATC----AAATTCT-AAGAAATTAATAAATTG
gi|20 : aatttTATACAG-----------CAAATGGAT-AA---AGAGAA-GTTC-------------ATACCCT-GACCCAAGAAAGTGTATTGACGAGTTA-TAATCGCCAGCtctattaagttctattttcattaggtctcttatttgct
gi|21 : AAGTATTGTACAA-TAAAAACCTA--------ACAT-CTTATATAATTGATTC-ATCAAAACTAAATATAT-TAt
gi|22 : ----T--------------GT----------GTGT------------------TTATACAG-----------CACATGGAT-AAAAGAAAAAC-GTTCTACATTTGTATTCATA
gi|3 : ACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAGTCAA-T-CAACT----------------------TGTANNNN----N--------------NN----------NNNNNNNNNNNNNNNNNNNNNNTTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATTTGTATTCATACCTTGGACGC-AGAAAGTGTATTGACGA-TCACTAATCGCCAGCGACATCTTATTGTTATCAC-ACAATAGTGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTATAATATCATAGGCCAGAGA-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTAAAACA-TTCATC----AAATTCT-AATA----AATAAATTG
gi|4 : ACCTT--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAATTAATTAAAT-CAACT----------------------TGTATGTG----T--------------GTATGTGT----GTGT------------------TAATATAG-----------CACATGGAT-AA---GGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AGAAAGTGTATTGACGA-TCACTAATCGCCAGCGACAACTTATTGTTATCAT-ACAATAGCGAGACACGGCTAGCGGTCAATGCCATTGTTTGTAGCATTGTAATATCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtactattatcataacgtctcttatttactaaataaatatattatgcaagtttacatattaaatcagcttgtttagagattaacaatgatatgaatttctgttttatgtatgt
gi|5 : AATAGTTTATTTCGGCA-TATGAACATACATGTTTGTCGCCTTGACATATGTATAGGCGACA-GTTACAACAAATGTGAGAAGTGCATGATATAATCAAGTAATGTACAA-TATAAACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TAAATATAT-TAGTTTGTTAAAT-CAACT----------------------TGTATGCG----T--------------GT----------GTGT------------------TTATACAT-----------CACATGGAT-AA---CGAGAC-GTTCTACATTTGTATTCATACCCTGGACGC-AAAAAGTGTATTGACGA-T--------------GACAACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCCGTCAATGCCATTGTTTGTAGCATTATATTATCATAGGCCAGAGT-AT-AAAAAC----------ACATTGTTTGAAG-----TTCACATTTATAACA-TTCATC----AAATTCT-AATA----AATAAATTGtctattaagtactattatcattacgtctcttatttgctaaataaatatattttgcaagtttacatattacaccagcttgttaaaaagtcatcaatgatatgaatatctgttttaatagtatgt
gi|6 : caATCTA--------ACAT-TATATATAATTTATTC-ATCAAAA-TAAATATAA--AATTAATTATAT-CAACT-----------------------GTATGAG----T--------------GT----------GTGT------------------GTATACAG-----------CACATGGAT-AA---AGAGAC-GTTCTACATCTTTATTCATACCCTGGACGC-AGAAAGTGTATTGACGA-TCACTAATCGCCAGCGACAACTTATTGTTATCAC-ACAATAGCGAGACAAGGCTAGCGGTCAATGCCATTGTTTGCAGCATTATAATATTATAGGCCAGAGT-AT-AAAAAC----------AAATTATTTGAAG-----TTCACATTTATAACA-TTTATC----AGATTCT-AATA----AATAAACTG
gi|7 : AACAGTTTATTTCGGCA-TATGGACATACATGTTTGTCGCCTTGACATATGTATAGGTGGCAAGTTACAACAAATGTGAGAAGAGCATGATATAATCAAGTATTGTACAA-TATAAATCTA--------ACATCTA-ATATAATTGATTC-ATCAAAC-TAAATATAT-CAATAAGTTAAAT-CAACT----------------------TGTATGTG----T--------------AC--------------------------------TTATACAG-----------CACATGGATTAA---AAAAAC-GTTCTACATTTGTATTCATACCCTGGACGC-ATAAAGTGTATTGACGA-TCACTTATCGCCAGCGACAACTTATTGTTATCAC-ACAATAGCGAGACACGGCTAGCAGTCAATGCCGTTGTTTGTAGCATTATAATATCATAGGCCAGTGT-AT-AAAAAC----------AAATTGTTTGAAG-----TTCACAtctattaagtacttgtatgattacgtctcttatttgcttaataactacattttgcaagtttcatattacaccagcttgtttagagattaacaat
gi|8 : aattcTTC-ATTACAT-AAAATGTACATACTTA--TAAAA-TAA------------------------TGCATTTGAATAT--------------TT----------ATGT------------------CTACAAAA-----------TACGCGG-T-AA---AGAGATTGTT----ATTT---TTCATTTTTT--AT-T-ACAAGGTGTATCA--GA-ATA--AATTG-----GGCAACTAATTGTTATTGGGAGAATGGCGAGACACTGCCAGCGATCAATGTCATTGTTGGTAAGAACATAAAATCAAAGATTAGAGA-AT-AAATAC----------AACTACTTTGAAATTAATTTTAAGTTTATAACG-TTTATC----CAATTCT-GATA----
gi|9 : ttatgACCTA--------ACAT-TATATATAATTGATTC-ATCAAAA-TCA-TATTT-CCATTAATTAAAT-CAACT----------------------T---------------------------------------TG---------------------------------------ATATGGAT-AA---AGAGAC-GTTCAACATTTGTATTCATACCATGGCCGC-AGAAAATGTATTG---------------CCAGAGACAACTTATTGTAGTCAC-GCAATGGCGAGACACGACTAGCGGCCAATGTCATTGTTTACAGCAATATAATACCATAGGCCAGAGT-AT-AAAAAC----------AAATTGTTTGAAT-----TTCACATTTATAACACTTTATC----AAATTCT-AATA----GATACATTGctttctattactagtatcaacaactcttaaatgctaagaaaaaatattttgcaagtttatatattacaccagcttggctagagtttaccaatgaatttctgttttgt