lowQualScore : 111111111111111111
lowQualScore : 1 2 2 222222222222222222 22222222 55555 11 222 2 2 11 4444 111 2 99999999999999 333 2 5555555555555555 333 1 2 55555 11 2 2 1 1 33333333333333333333 111 3333333333333333333333333 66666666666666666666666666666666666666666666666666
lowQualScore : 6 6 5 0 2 0 3 333333333333333333 3 3 77777777 00000 55 44 000 0 0 88 66 4 6666 111 0 11111111111111 6 2 2 555 0 7777777777777777 3 000 5 0 2 00000 88 0 3 2 0 2 0 55555555555555555555 6 111 44444 22 22 2 1 3333333333333333333333333 2 0 8 555 6 3 3 3 9 44444444444444444444444444444444444444444444444444
lowQualScore : . . . . . . . .................. . . ........ ..... .. .. ... . . .. .. . .... ... . .............. . . . ... . ................ . ... . . . ..... .. . . . . . . .................... . ... ..... .. .. . . ......................... . . . ... . . . . . ..................................................
lowQualScore : 0 0 0 0 5 0 0 000000000000000000 0 0 55555555 00000 00 55 555 0 0 55 00 0 0000 000 0 55555555555555 0 5 5 000 0 0000000000000000 0 555 5 0 5 00000 55 0 0 5 0 3 0 77777777777777777777 7 555 33333 44 55 0 2 6666666666666666666666666 0 2 2 444 2 1 6 1 0 00000000000000000000000000000000000000000000000000
consensus : CTATTGAAAATAAACCGAAAACAACATCAATCGTTGATACAANTTCATTTAAGTNCAAACTTATATCTGATAAGTATATATATTTNCANTTAAAGGGTATTCAGTATGNNACAATGCTNNAATCGACATCATGTTAATGTGGATAACATGTAAATGANNTNCGGTGCGGACATTGANNNGACATGTACAATGTGTCTCGTTATTNCGTGCATNCCATTNACAGTACAGAATNATGATGCGAAAGAGATANACACCNATATATGGAGTGCANATTACCCAGGACTTATTAACAATGANACGGAGCGCGGATAAATCGTTGC-TCA--AC-----AC-CA--T---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTAT--T--GG-GGG----------T----TG-GG-----G-GGAGNGGG---G-G-C-AACCTGAGGAGAGAGTAAAATATTGAGATAGAGGCAAAGTATATGCTGGCTCCTACAACCTAAACAAACCCCC
Reference ( gi|3 ) : CTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA-----------TA--T--ATATATTTTCAATTAAAGGGT-TTC-----GCGACAATGTTGAAATCGACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGTGGT--CATTGAAATAACATG-ACAAT-TG----------ACGTGCGTCCCATTGA---TAC-GAATT-CGGTATTAA-----TAAATA--AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-CA--T---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTAT--T--GG-GGG----------T----TG-GG-----G-GGAGTGGG---G-G-C-AGCCTGAGGAGATAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCCCCCCGGG
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAGT-CATTTAAGTACAAA-----------TA--TATATATATTTTCAATTAAAGGGT-TTC-----GCGACAATGTTATAATCGACATTATATTA-TATAGATA-CATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TG----------CCGTGCATCCCATTGA---TAC-GAATTATAATACGAA-----TAAATA--CATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-CA--T---G-CAT---C
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGT--ATATATTTGTACTT-----GTATTCAGTATGATACAATGCTTAAA---ATATCATGTTAATGTGAATAACATG--AATGAGGTACGATGCA--TATTGATCAGACATGTACAATGTGTCTCGTTATTACGTATATACCATTTACAGTACAGAATA-TGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAACT--TGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTAT--T--GT-GTG----------TG---TGTGT-----G-AGAGTG
gi|30 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctacTATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTAT--tgtggaggggggggggggggggggggagggggggggggagagacagcaaactgagtagaaattaaaatatttgggggccaaagtaaatgctggcccctccaacata
gi|5 : GC-TTA--A------AC-CA--CTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTAT--G--GG-GGG----------T--------------G-GTGGTGGGGCTG-G-C-AACCTCAGGAGATAAT
gi|28 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgA--AC-----ATGCA--T---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA------AG-GGG----------T----TG-GG-----GTGGAGg
gi|31 : A--T---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA---T--GG-GGG----------T----TG-GG-----G-gg
gi|21 : AT---CATGGGCATAGGAGCGTTTCAATTTTTTTTT--T--GG-GGG----------------G-GG-----G-GGGGGGGG---G-G-at
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTAT--T--Ggggggggggggggggggggggggggggatag
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTAT--T--GG-GGG----------------G-GG-----G-GGGGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|13 : g---CATGGGTATAGAAGCGTTTCAA-----TTAT--T--------------------------GG-----G-GGAGCGGG---GTG-C-AACATGAGGAG
gi|20 : ---CATGGGCGTAAGAGCGTTTCAA-----TTAG--TCCGG-GGG----------G----TG-GG-----G-tgtttgaggacgtatatgctgcccccctcccccccccccccccccccccccctgcatacctgaacatttg
gi|14 : ttgccatggataaaaacatattatgaaca---CATGGGCGAAAGAGCGTTTCAA-----TAATGGC--GG-GGG----------A----GG-GG-----G-GGGGGGGG---G-G-taaagtacaaacctg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATAT--T--GG------------------------------------GCG---A-C-C-AACCTGAGGAGAGAGTgggggaggggggggggggggaaaatgttgggggggggggggggtatatgtttggtactccaacctgaaa
gi|1 : agATGGGCGTAAGAGCGTTTCAA-----TTAT--T--GG-GGG----------T----TG-GG-----G-GAAGTGGG---G-A-C-AGCCTGAGGAGATAGTAAAATATTGAGATAGAGGCAAAGTATATGCTGGCTCCTACAACCTAAACAAACCCCCat
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTA---T--GG-GGG----------G----TG---------------GGG---G-G-C-AACCTGAGGAGAGAGTacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|16 : ATGGGCGTGAGAGCGTTTCAA-----TTAT--T--Gaaaatatttgagtgggcaaagtatatgatggcccctccaacccc
gi|7 : ATGGGCGTAGGGGCATTTCAA-----TTAT--T--GA------------------------------------GAA---G-G-CAAACCTGAGGAGAGAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|17 : ATGGGTGTAGGAGCATTT-AA-------AT--T--GGTGGG----------T-------AG-----G-AGAGGGGG---GTG-T-AACCTGAAGAGAatatggggatgattgagaaagtttatgctggacccccaacctgaacatctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|26 : ATGGGCGTATGGGCGTTTCAA-----TTAA--T--GG-GGGGGCAAAAACCTG---TG-GA-----G-GGAGTGgtaaaatagtgtgggggtgcgaggaatttactggcccctccaacctgaac
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTAT--T--GG-G-----------------TG-GG-----T-GGAG-GGG---G-G-G-AGCCtgagaggga
gi|33 : TGGGCGGAGGAGCGTTTCAA-----TTAT--C--GG-GG----------------TG-GG-----G-Gcatctcgcctgaaggaggttg
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTAT--T--GG-GTG----------C-------GG-----T-GGAGGGGG---G-G-C-AAACTGGGGAGAGAGT
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTAT--T--GG-G--------------------------------GTAGG---G-GCC-AACCTCAGGAGAGAGTgcatgaggatgtatgataaagagtatactgcacccccacccccacacacactcacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
gi|15 : aGGTGTATGAGCGTTTCAA-----TTAT--G--GG-GGG----------TGGGGTG-GGGCTGTG-GGAGAGGG---G-C-C-AACCTTAGGAGAGAGTgtataatgatgtatttccaggccagatagtatatgctgaacctgaatatcctgaatattggtatatagttttggccccgtccaagctccctg
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AATACTTGATACAATTTAATTGAAATCTAAGCTTACATTGTACCTAAATCAATATTCAATATGAATCAATGCTTAATGCTTAAAATGTCTTGTTAATGTTAATAATATGAATGTGGTACAATGCATGTTAATCAGACGTACAAAATGGGTTCGTTATTACGTTCATAATATGATGTTAAAGAGAAACACGCCAATGT
Unaligned ( gi|9 ): GGGGGGGAGGGGGGGAAGCCTGATGAGAGAGGGTAATGGTGTAATGAGGATGTATGAGAAAGTTTATGCTGGCCCCACAACCAGAACATTGAAGGGAACAGCCCCCCCCCCCTTTTTCCAATCTACTGGACCCCGGCTCCAACGCCTATG
Unaligned ( gi|11 ): GGGGGGGGGGGGCAACCTGAGGAGAGAGTAAGATATGGGGGATAAAGCATATGCTGGCCCCTCCAACCTGAGCCTTGGATAGGGCGGCCCCCTACCCCCACCCTCGGCTCTTACGCCTAGCGTTGTATACATTTCT
Unaligned ( gi|12 ): GTGAATAATATGAATTTTGTACTATGAATGGTGATCAGACGTGTATAATGTGTTTCGTTATTAAGTACATGCCATTAACAGAACAGAAGATGATGTTAAAGAGATACACGCCGATGTTGAAATAC
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA
Unaligned ( gi|25 ): TAACGTATTTTTGTTATTACGTACATGTTAACGAAGTCAGGATATTAAACAGTTACACGCCGAGGCTG
Alignments
lowQualScore : 111111111111111
lowQualScore : 1 000000000000000 111 11111111 33333 11 33333333 22 11 222 1 1 22222222222 3333333 111 11 1 1 44444 2 22 11 2222222222222222 111 22222222222222222222222222222222222 2222222222222222222222 555555555555555555555555555555
lowQualScore : 3 5 777 2 1 000000000000000 555 44 1 77777777 11111 22 11 11111111 66 1 11 55 333 1 11 666 333 3 0 88888888888 1 8 3 2222222 888 22 7777 1 88 5 2 9 1 0 22222 7 0 3 1 6 0 44 44 8 99 1111111111111111 5 111 44444 22 55555555555555555555555555555555555 1 66666 0 1 0000000000000000000000 2 33 5555 333333333333333333333333333333 555 7 88 1
lowQualScore : . . ... . . ............... ... .. . ........ ..... .. .. ........ .. . .. .. ... . .. ... ... . . ........... . . . ....... ... .. .... . .. . . . . . ..... . . . . . . .. .. . .. ................ . ... ..... .. ................................... . ..... . . ...................... . .. .... .............................. ... . .. .
lowQualScore : 0 5 555 0 0 000000000000000 555 88 0 22222222 00000 00 88 00000000 55 4 66 88 444 0 00 444 000 6 0 44444444444 4 8 8 6666666 222 88 0000 0 88 5 0 0 0 7 33333 3 7 3 0 7 7 00 88 0 22 0000000000000000 7 555 33333 55 99999999999999999999999999999999999 9 44444 1 8 6666666666666666666666 7 99 2222 222222222222222222222222222222 222 9 55 0
consensus : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC------GTATATATATTTTCAATTAAAGGGTATTCAGTATGCGACAATGCTNNAAT-C----GACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-TCGTTATTACGTGCATNCCATTGACAGTACAGAATTATGATGTTAAAGAGATACACGCCAATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGA--GTAA-AATA-T--TGA-GATG----GG-G--G-CAA---AGTATATGCTG-G-CCCCTCCAACCTGAACAAACCCCC
Reference ( family-2827 ) : CTATTGAAAATAAACCGAAAACAACATCAATCGTTGATACAANTTCATTTAAGTNCAAACTTATATCTGATAAGTATATATATTTNCANTTAAAGGGTATTCAGTATGNNACAATGCTNNAAT-C----GACATCATGTTAATGTGGATAACATGTAAATGANNTNCGGTGCGGACATTGANNNGACATGTACAATGTGTCTCGTTATTNCGTGCATNCCATTNACAGTACAGAATNATGATGCGAAAGAGATANACACCNATATATGGAGTGCANATTACCCAGGACTTATTAACAATGANACGGAGCGCGGATAAATCGTTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGNGGGG-G--------------------CAA-CCTGAGGAGAGA--GTAA-AATA-T--TGA-GATA----GA-G--G-CAA---AGTATATGCTG-G-CTCCTACAACCTAAACAAACCCCC
gi|1 : ATGGGCGTAAGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GAAGTGGGG-A--------------------CAG-CCTGAGGAGATA--GTAA-AATA-T--TGA-GATA----GA-G--G-CAA---AGTATATGCTG-G-CTCCTACAACCTAAACAAACCCCC
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTATT---------------------------G-GGGT-------------------AGGGG-C--------------------CAA-CCTCAGGAGAGA--GT-G-TATA-A--TGA-TGTATTTCCA-G--G-CCAGATAGTATATGCTG----------AACCTGAATAacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|11 : aGG-----GGGGGGGGG-G--------------------CAA-CCTGAGGAGAGA--GTAA-GATA-T--GG----------GG-G--A-TAA---AGCATATGCTG-G-CCCCTCCAACCTGAGCtcctgaatattggtatatagttttggccccgtccaagctccctg
gi|12 : GTGAATAATATG--AATTTTGTAC--TATGAATGGTGATCAGACGTGTATAATGTGTTTCGTTATTAAGTACATGCCATTAACAGAACAGAA-GATGATGTTAAAGAGATACACGCCGATGT-TGAAATACcttggatagggcggccccctacccccaccctcggctcttacgcctagcgttgtatacatttct
gi|13 : ---CATGGGTATAGAAGCGTTTCAA-----TTATT--G------------------------G-GGG------------------AGCGGGGTG--------------------CAA-CATGAGGAGTG----------T--T--TGA-G----------G--A-C------GTATATGCTG-C-CCCC
gi|15 : GGTGTATGAGCGTTTCAA-----TTATG--G------------------------G-GGGTGGGGTG-GGGCTGTGGGAGAGGGG-C--------------------CAA-CCTTAGGAGAGA--GTAA-AATA-G--GGG-G-------GG-G--G-GGG---AGTATATGCTG-G-CCGCTCCAACCTGctcccccccccccccccccccccccctgcatacctgaacatttg
gi|16 : ttATGGGCGTGAGAGCGTTTCAA-----TTATT--G------------------------
gi|17 : ATGGGTGTAGGAGCATTT-AA-------ATT--G------------------------GTGGGT-------AGG-----AGAGGGGGGTG--------------------TAA-CCTGA--AGAGA--GTAA-AATA-G--TG----TG----GG-GGTG-CGA---GGAATTTACTG-G-CCCCTCCAACCTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTATG--G------------------------G-GGGT-------------------GGGGG-G--------------------CAA-CCTGAGGAGAGA--GTAA-AATATT--TGA-G-T------G-G--G-CAA---AGTATATGATG-G-CCCCTCCAACC
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGTATATAT--TTGTACTT-----GTATTCAGTATGATACAATGCTTAAA--------ATATCATGTTAATGTGAATAACATG--AATGAGGTACGATGC--ATATTGATCAGACATGTACAATGTGTCTCGTTATTACGTATATACCATTTACAGTACAGAAT-ATGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAAC--TTGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTATT--GTGTGTGTGTGTGAGAGTGTGTGGAG-GGGG----GG-GGG-----GGGGGGGGG-GAGGGGGGGGGGGAGAGACAGCAA-ACTGAGTAGAAA--TTAA-AATA-T--T-----TG----GG-G--GCCAA---AGTAAATGCTG-G-CCCCTCCAACATAcc
gi|20 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctac---CATGGGCGTAAGAGCGTTTCAA-----TTAGTCCG------------------------G-GGGG----TG-GGG-----
gi|21 : ttgccatggataaaaacatattatgaacaAT---CATGGGCATAGGAGCGTTTCAATTTTTTTTTT--G------------------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------taaagtacaaacctg
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTATT--G------------------------G-G-------TG-GGT-----GGAGGGGGG-G--------------------gggggggggggggggggggggggggggatag
gi|26 : ATGGGCGTATGGGCGTTTCAA-----TTAAT--G------------------------G----------G-GGG-----GCAAA---------------------------AA-CCTGTGGAGGGA--GTagcccatctcgcctgaaggaggttg
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTATT--G------------------------gtgagaggga
gi|28 : A--AC-----ATGC--AT---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA----A------------------------G-GGGT----TG-GGGT----GGAGGGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATATT--G------------------------G-------------------------GCGA-C--------------------CAA-CCTGAGGAGAGA--GTA
gi|3 : agCTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA---------------TATATATATTTTCAATTAAAGGGT-TTC-----GCGACAATGTTGAAAT-C----GACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGTG--GTCATTGAAATAACATG-ACAAT-TG----------ACGTGCGTCCCATTGA---TAC-GAATT-CGGTATTAA-----TAAATA--AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGTGGGG-G--------------------CAG-CCTGAGGAGATA--GTNN-NNNN-N--NNN-NNNN----NN-N--N-NNN---NNNNNNNNNNN-N-NNNNNNNNNNNNNNNNCAACCCCCt
gi|30 : TATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTATccggg
gi|31 : --AT---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA-T--G------------------------G-GGGT----TG-GGG-----
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGG------G-GGG-----GGGGat
gi|33 : gTGGGCGGAGGAGCGTTTCAA-----TTATC--G------------------------G-GG------TG-GGG-----G
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAG-TCATTTAAGTACAAA--TA-----------TATATATATTTTCAATTAAAGGGT-TTC-----GCGACAATGTTATAAT-C----GACATTATATT-ATATAGAT-ACATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TG----------CCGTGCATCCCATTGA---TAC-GAATTATAATACGA-----ATAAATAC--ATATATAAAGT-TACATTATC-----CTTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-C--AT---G-CAT---C
gi|5 : GC-TTA--A------AC-C--ACTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTA-T--G------------------------G-GGGG----TG-GTG-----GTGGGGCTG-G--------------------CAA-CCTCAGGAGA
gi|6 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgTTGATACAATTTAATTGAAATCTAAGCTTACATT------GTACCTA-------AATCAA----TATTCAATATGAATCAATGCT-TAATGCTTAAAATGTCTTGTTAATGTTAATAATATG--AATGTGGTACAATGC--ATGTTAATCAGACGTACAAAATGGGT-TCGTTATTACGTTCAT----------------AAT-ATGATGTTAAAGAGAAACACGCCAATGTtaatg
gi|7 : aatacATGGGCGTAGGGGCATTTCAA-----TTATT--G-------------------------------------------------AGAAG-G--------------------CAAACCTGAGGAGAGA--GT----ATA-T--GGG-GATGATT-GA-G-----AA---AGTTTATGCTG-GACCCC--CAACCTGAACA
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTATT--G------------------------G-G-------TGCGGT-----GGAGGGGGG-G--------------------CAA-ACTGGGGAGAGA--GTGC-A-------TGAGGATG----TATG--A-TAA---AGAGTATACTGCA-CCCCCAC-CCCCACACACACTCtctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|9 : G-GGG-----GGAGGGGGG-G--------------------AAG-CCTGATGAGAGAGGGTAATGGTG-TAATGAGGATGTAT-GA-G-----AA---AGTTTATGCTG-G-C-CCCACAACCAGAACAacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CATGGGCGAAAGAGCGTTTCAATAATGGCGGGGGAGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGAAAATGTTGGGGGGGGGGGGGGGTATATGTTTGGTACTCCAACCTGAAA
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA
Unaligned ( gi|25 ): TAACGTATTTTTGTTATTACGTACATGTTAACGAAGTCAGGATATTAAACAGTTACACGCCGAGGCTG
Alignments
lowQualScore : 1 55555555555 11 11111111 44444444444444444 222 22 222 1 1 11111 4444444444444 1 1 33333 1 11 2222222222222222 111 22222222222222222222222222222222222 1111111111111111111111 3333333333333333333333333333333333333
lowQualScore : 1 5 777 1 77777777777 33 3 33 77777777 11111111111111111 22 000 66 1 11 55 22 1 55 666 222 3 0 99999 2 7 1 2222222222222 2 3 1 5 9 6 55555 7 3 44 7 8 99 1111111111111111 5 000 44444 22 66666666666666666666666666666666666 1 66666 0 8888888888888888888888 2 33 8888888888888888888888888888888888888 3 2
lowQualScore : . . ... . ........... .. . .. ........ ................. .. ... .. . .. .. .. . .. ... ... . . ..... . . . ............. . . . . . . ..... . . .. . . .. ................ . ... ..... .. ................................... . ..... . ...................... . .. ..................................... . .
lowQualScore : 0 5 555 0 55555555555 88 2 22 22222222 22222222222222222 00 555 55 4 66 88 00 4 22 444 888 6 0 22222 2 5 0 7777777777777 5 2 0 5 0 7 00000 3 3 00 0 0 22 0000000000000000 7 777 22222 44 22222222222222222222222222222222222 8 11111 3 9999999999999999999999 5 77 2222222222222222222222222222222222222 1 3
consensus : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATTATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-CA--T---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATA-TTGG-GATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
Reference ( family-2827 ) : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNNAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTGCATNCCATTGACAGTACAGAATTATGATGTTAAAGAGATACACGCCAATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-CA--T---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATA-TTGA-GATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
gi|1 : ATGGGCGTAAGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GAAGTGGGG-A--------------------CAG-CCTGAGGAGATAGTAAAATA-TTGA-GATA-------G--AGG--C-------AA--AGTATATGCTG-GCTCCTACAACCTAAACAAACCCCC
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTATT---------------------------G-GGGT-------------------AGGGG-C--------------------CAA-CCTCAGGAGAGAGT---GTA-TAAT-GATGTATTTCCA--GGC--C-------AGATAGTATATGCTG---------AACCTGAATAacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|11 : aGG-----GGGGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAGATA--TG-----G-------G--GGA--T-------AA--AGCATATGCTG-GCCCCTCCAACCTGAGCtcctgaatattggtatatagttttggccccgtccaagctccctg
gi|12 : GTGAATAATATG--AATTTTGTAC--TATGAATGGTGATCAGACGTGTATAATGTGT-TTCGTTATTAAGTACATGCCATTAACAGAACAGAA-GATGATGTTAAAGAGATACACGCCGATGT-TGAAATACcttggatagggcggccccctacccccaccctcggctcttacgcctagcgttgtatacatttct
gi|13 : ---CATGGGTATAGAAGCGTTTCAA-----TTATT--G------------------------G-GGG------------------AGCGGGGTG--------------------CAA-CATGAGGAG---------TG-TT-----TG-------A--GGA--C------------GTATATGCTGCCCCCCTCC
gi|14 : ---CATGGGCGAAAGAGCGTTTCAA-----TAATG--GCGGGGGA-----------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------GGA-GGGGGGGGGGGGGGAAAATG-TTGG-GGGG-------G--GGG--G-------GG--GGTATATGTTT-GGTACTCCAACCTGAAcccccccccccccccccccccctgcatacctgaacatttg
gi|15 : GGTGTATGAGCGTTTCAA-----TTATG--G------------------------G-GGGTGGGGTG-GGGCTGTGGGAGAGGGG-C--------------------CAA-CCTTAGGAGAGAGTAAAATA-GGGG-GGGG-------G--GGG--------------AGTATATGCTG-GCCGCTCCAACCTGAa
gi|16 : ttATGGGCGTGAGAGCGTTTCAA-----TTATT--G------------------------
gi|17 : ATGGGTGTAGGAGCATTT-AA-------ATT--G------------------------GTGGGT-------AGG-----AGAGGGGGGTG--------------------TAA-CCTGA--AGAGAGTAAAATA-GTG----TG-------G--GGGTGC-------GA--GGAATTTACTG-GCCCCTCCAACCTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTATG--G------------------------G-GGGT-------------------GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTTGA-G-T-----------GGG--C-------AA--AGTATATGATG-GCCCCTCCAACC
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGTATATATTTGTACTT-----GTATTCAGTATG---ATAC----AATGCTTAAA---ATATCATGTTAATGTGAATAACATG--AATGAGGTACGATGC--ATATTGATCAGACATGTACAATGTGTCT-CGTTATTACGTATATACCATTTACAGTACAGAAT-ATGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAACT--TGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTATT--GTGTGTGTGTGTGAGAGTGTGTGGAG-GGGG----GG-GGG-----GGGGGGGGG-GAGGGGGGGGGGGAGAGACAGCAA-ACTGAGTAGAAATTAAAATA-TT-----TG-------G--GGGC-C-------AA--AGTAAATGCTG-GCCCCTCCAACcc
gi|20 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctac---CATGGGCGTAAGAGCGTTTCAA-----TTAGTCCG------------------------G-GGGG----TG-GGG-----ata
gi|21 : ttgccatggataaaaacatattatgaacaAT---CATGGGCATAGGAGCGTTTCAATTTTTTTTTT--G------------------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------taaagtacaaacctg
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTATT--G------------------------G-G-------TG-GGT-----GGAGGGGGG-G--------------------gggggggggggggggggggggggggggatag
gi|25 : T-T-TGTTATTACGTACATGTTAACGA-AGT-CAG------GATATTAAACAGTTACACGCCGAagcccatctcgcctgaaggaggttg
gi|26 : taacgtattATGGGCGTATGGGCGTTTCAA-----TTAAT--G------------------------G-GG-------G-GGC-----AAA-----------------------------AA-CCTGTGGAGGGAGTggctg
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTATT--G------------------------gtgagaggga
gi|28 : A--AC-----ATGCA--T---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA----A------------------------G-GGGT----TG-GGGT----GGAGGGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATATT---------------------------------------------------GGGCGA-C--------------------CAA-CCTGAGGAGAGAGTA
gi|3 : agCTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA-----------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTGAAATCGACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGTG--GTCATTGAAATAACATG-ACAAT-TG-----------ACGTGCGTCCCATTGA---TAC-GAATT-CGGTATTAA-TAAATA------AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-CA--T---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGTGGGG-G--------------------CAG-CCTGAGGAGATAGTNNNNNN-NNNN-NNNN-------N--NNN--N-------NN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNCAACCCCCt
gi|30 : TATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTATccggg
gi|31 : A--T---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA-T--G------------------------G-GGGT----TG-GGG-----
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGG------G-GGG-----GGGGat
gi|33 : gTGGGCGGAGGAGCGTTTCAA-----TTATC--G------------------------G-GG------TG-GGG-----G
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAG-TCATTTAAGTACAAA--TA-------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTATAATCGACATTATATT-ATATAGAT-ACATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TGC-----------CGTGCATCCCATTGA---TAC-GAATTATAATA-CGAATAAATAC------ATATATAAAGT-TACATTAT-C----CTTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-CA--T---G-CAT---C
gi|5 : GC-TTA--A------AC-CA--CTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTA-T--G------------------------G-GGGG----TG-GTG-----GTGGGGCTG-G--------------------CAA-CCTCAGGAGA
gi|6 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgTTGATACAATTTAATTGAAATCTAAGCTTACATT--GTA--CCTA-------AATCAA----TATTCAATATGAATCAATGCTTAATGCTTAAA---ATGTCTTGTTAATGTTAATAATATG--AATGTGGTACAATGC--ATGTTAATCAGACGTACAAAATGGGT-T-CGTTATTACGTTCAT----------------AA-TATGATGTTAAAGAGAAACACGCCAATGTtaatg
gi|7 : aatacATGGGCGTAGGGGCATTTCAA-----TTATT--G------------------------A-GAA------------------------G-G--------------------CAAACCTGAGGAGAGAGT---ATA-TGGG-GATG-------ATTGAG----------AA--AGTTTATGCTG-GACCC-CCAACCTGAACA
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTATT--G------------------------G-G-------TGCGGT-----GGAGGGGGG-G--------------------CAA-ACTGGGGAGAGAGTGCA-----TGAGGATGT------A--TGA--T-------AA--AGAGTATACT--GCACCCCCACCCtctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|9 : G-GGG-----GGAGGGGGG-G--------------------AAG-CCTGATGAGAGAGGGTAATG-GTGT-AATG-------A--GGA--TGTATGAGAA--AGTTTATGCTG-GCCCC-ACAACCAGAACAccacacacactcacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA
Alignments
lowQualScore : 1 55555555555 11 11111111 44444444444444444 222 22 222 1 1 11111 4444444444444 1 1 33333 1 11 2222222222222222 111 22222222222222222222222222222222222 1111111111111111111111 33333333333333333333333333333333333
lowQualScore : 1 5 777 1 77777777777 33 3 33 77777777 11111111111111111 1 000 66 1 11 55 22 1 55 666 222 3 0 99999 0 7 1 9999999999999 1 3 1 2 5 9 6 55555 7 3 44 77 8 99 1111111111111111 5 000 44444 22 66666666666666666666666666666666666 1 66666 0 8888888888888888888888 2 666 00000000000000000000000000000000000 3 2
lowQualScore : . . ... . ........... .. . .. ........ ................. . ... .. . .. .. .. . .. ... ... . . ..... . . . ............. . . . . . . . ..... . . .. .. . .. ................ . ... ..... .. ................................... . ..... . ...................... . ... ................................... . .
lowQualScore : 0 5 555 0 55555555555 88 2 22 22222222 22222222222222222 0 555 55 4 66 88 00 4 22 444 888 6 0 22222 3 5 0 2222222222222 0 2 0 2 5 0 7 00000 3 3 00 88 0 22 0000000000000000 7 777 22222 44 22222222222222222222222222222222222 8 11111 3 9999999999999999999999 5 555 88888888888888888888888888888888888 1 3
consensus : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAA-TATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
Reference ( family-2827 ) : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATTATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
gi|1 : ATGGGCGTAAGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GAAGTGGGG-A--------------------CAG-CCTGAGGAGATAGTAAAATATTGAGATA-------G--AGG--C-------AA--AGTATATGCTG-GCTCCTACAACCTAAACAAACCCCC
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTATT---------------------------G-GGGT-------------------AGGGG-C--------------------CAA-CCTCAGGAGAGAGT---GTATAATGATGTATTTCCA--GGC--C-------AGATAGTATATGCTG---------AACCTGAATAacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|11 : aGG-----GGGGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAGATA-TG----G-------G--GGA--T-------AA--AGCATATGCTG-GCCCCTCCAACCTGAGCtcctgaatattggtatatagttttggccccgtccaagctccctg
gi|12 : GTGAATAATATG--AATTTTGTAC--TATGAATGGTGATCAGACGTGTATAATGTGT-TTCGTTATTAAGTACATGCCATTAACAGAACAGAAG-ATGATGTTAAAGAGATACACGCCGATGT-TGAAATACcttggatagggcggccccctacccccaccctcggctcttacgcctagcgttgtatacatttct
gi|13 : ---CATGGGTATAGAAGCGTTTCAA-----TTATT--G------------------------G-GGG------------------AGCGGGGTG--------------------CAA-CATGAGGAG---------TGTT----TG-------A--GGA--C------------GTATATGCTGCCCCCCTCC
gi|14 : ---CATGGGCGAAAGAGCGTTTCAA-----TAATG--GCGGGGGA-----------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------GGA-GGGGGGGGGGGGGGAAAATGTTGGGGGG-------G--GGG--G-------GG--GGTATATGTTT-GGTACTCCAACCTGAAcccccccccccccccccccccctgcatacctgaacatttg
gi|15 : GGTGTATGAGCGTTTCAA-----TTATG--G------------------------G-GGGTGGGGTG-GGGCTGTGGGAGAGGGG-C--------------------CAA-CCTTAGGAGAGAGTAAAATAGGGGGGGG-------G--GGG--------------AGTATATGCTG-GCCGCTCCAACCTGAa
gi|16 : ttATGGGCGTGAGAGCGTTTCAA-----TTATT--G------------------------
gi|17 : ATGGGTGTAGGAGCATTT-AA-------ATT--G------------------------GTGGGT-------AGG-----AGAGGGGGGTG--------------------TAA-CCTGA--AGAGAGTAAAATAGTG---TG-------G--GGGTGC-------GA--GGAATTTACTG-GCCCCTCCAACCTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTATG--G------------------------G-GGGT-------------------GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTTGAGT-----------GGG--C-------AA--AGTATATGATG-GCCCCTCCAACC
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGTATATATTTGTACTT-----GTATTCAGTATG---ATAC----AATGCTTAAA---ATATCATGTTAATGTGAATAACATG--AATGAGGTACGATGC--ATATTGATCAGACATGTACAATGTGTCT-CGTTATTACGTATATACCATTTACAGTACAGAA-TATGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAAC--TTGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTATT--GTGTGTGTGTGTGAGAGTGTGTGGAG-GGGG----GG-GGG-----GGGGGGGGG-GAGGGGGGGGGGGAGAGACAGCAA-ACTGAGTAGAAATTAAAATATT----TG-------G--GGGC-C-------AA--AGTAAATGCTG-GCCCCTCCAACcc
gi|20 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctac---CATGGGCGTAAGAGCGTTTCAA-----TTAGTCCG------------------------G-GGGG----TG-GGG-----ata
gi|21 : ttgccatggataaaaacatattatgaacaAT---CATGGGCATAGGAGCGTTTCAATTTTTTTTTT--G------------------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------taaagtacaaacctg
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTATT--G------------------------G-G-------TG-GGT-----GGAGGGGGG-G--------------------gggggggggggggggggggggggggggatag
gi|25 : T-T-TGTTATTACGTACATGTTAACGA-AGT-CAG------GATATTAAACAGTTACACGCCGAagcccatctcgcctgaaggaggttg
gi|26 : taacgtattATGGGCGTATGGGCGTTTCAA-----TTAAT--G------------------------G-GG-------G-GGC-----AAA-----------------------------AA-CCTGTGGAGGGAGTggctg
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTATT--G------------------------gtgagaggga
gi|28 : A--AC-----ATGC--AT---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA----A------------------------G-GGGT----TG-GGGT----GGAGGGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATATT---------------------------------------------------GGGCGA-C--------------------CAA-CCTGAGGAGAGAGTA
gi|3 : agCTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA-----------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTGAAATCGACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGTG--GTCATTGAAATAACATG-ACAAT-TG-----------ACGTGCGTCCCATTGA---TAC-GAATT-CGGTATTAA-TAAATA------AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGTGGGG-G--------------------CAG-CCTGAGGAGATAGTNNNNNNNNNNNNNN-------N--NNN--N-------NN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNCAACCCCCt
gi|30 : TATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTATccggg
gi|31 : --AT---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA-T--G------------------------G-GGGT----TG-GGG-----
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGG------G-GGG-----GGGGat
gi|33 : gTGGGCGGAGGAGCGTTTCAA-----TTATC--G------------------------G-GG------TG-GGG-----G
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAG-TCATTTAAGTACAAA--TA-------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTATAATCGACATTATATT-ATATAGAT-ACATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TGC-----------CGTGCATCCCATTGA---TAC-GAATTATAATA-CGAATAAATAC------ATATATAAAGT-TACATTAT-C----CTTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-C--AT---G-CAT---C
gi|5 : GC-TTA--A------AC-C--ACTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTA-T--G------------------------G-GGGG----TG-GTG-----GTGGGGCTG-G--------------------CAA-CCTCAGGAGA
gi|6 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgTTGATACAATTTAATTGAAATCTAAGCTTACATT--GTA--CCTA-------AATCAA----TATTCAATATGAATCAATGCTTAATGCTTAAA---ATGTCTTGTTAATGTTAATAATATG--AATGTGGTACAATGC--ATGTTAATCAGACGTACAAAATGGGT-T-CGTTATTACGTTCAT-------A-A---------TATGATGTTAAAGAGAAACACGCCAATGTtaatg
gi|7 : aatacATGGGCGTAGGGGCATTTCAA-----TTATT--G------------------------A-GAA------------------------G-G--------------------CAAACCTGAGGAGAGAGT---ATATGGGGATG-------ATTGAG----------AA--AGTTTATGCTG-GACCC-CCAACCTGAACA
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTATT--G------------------------G-G-------TGCGGT-----GGAGGGGGG-G--------------------CAA-ACTGGGGAGAGAGT---GCATGAGGATGT------A--TGA--T-------AA--AGAGTATACT--GCACCCCCACCCtctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|9 : G-GGG-----GGAGGGGGG-G--------------------AAG-CCTGATGAGAGAGGGTAATGGTGTAATG-------A--GGA--TGTATGAGAA--AGTTTATGCTG-GCCCC-ACAACCAGAACAccacacacactcacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA
Alignments
lowQualScore : 1 55555555555 11 11111111 44444444444444444 222 22 222 1 1 11111 22222 1 1 33333 1 11 2222222222222222 111 22222222222222222222222222222222222 1111111111111111111111 33333333333333333333333333333333333
lowQualScore : 1 5 777 1 77777777777 33 3 33 77777777 11111111111111111 1 000 66 1 11 55 22 1 55 666 222 3 0 99999 0 7 1 99999 5 1 3 1 2 5 9 6 55555 7 3 44 77 8 99 1111111111111111 5 000 44444 22 66666666666666666666666666666666666 1 66666 0 8888888888888888888888 2 666 00000000000000000000000000000000000 3 2
lowQualScore : . . ... . ........... .. . .. ........ ................. . ... .. . .. .. .. . .. ... ... . . ..... . . . ..... . . . . . . . . ..... . . .. .. . .. ................ . ... ..... .. ................................... . ..... . ...................... . ... ................................... . .
lowQualScore : 0 5 555 0 55555555555 88 2 22 22222222 22222222222222222 0 555 55 4 66 88 00 4 22 444 888 6 0 22222 3 5 0 77777 7 0 2 0 2 5 0 7 00000 3 3 00 88 0 22 0000000000000000 7 777 22222 44 22222222222222222222222222222222222 8 11111 3 9999999999999999999999 5 555 88888888888888888888888888888888888 1 3
consensus : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
Reference ( family-2827 ) : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
gi|1 : ATGGGCGTAAGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GAAGTGGGG-A--------------------CAG-CCTGAGGAGATAGTAAAATATTGAGATA-------G--AGG--C-------AA--AGTATATGCTG-GCTCCTACAACCTAAACAAACCCCC
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTATT---------------------------G-GGGT-------------------AGGGG-C--------------------CAA-CCTCAGGAGAGAGT---GTATAATGATGTATTTCCA--GGC--C-------AGATAGTATATGCTG---------AACCTGAATAacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|11 : aGG-----GGGGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAGATA-TG----G-------G--GGA--T-------AA--AGCATATGCTG-GCCCCTCCAACCTGAGCtcctgaatattggtatatagttttggccccgtccaagctccctg
gi|12 : GTGAATAATATG--AATTTTGTAC--TATGAATGGTGATCAGACGTGTATAATGTGT-TTCGTTATTAAGTACATGCCATTAACAGAACAGAAGATGATGTTAAAGAGATACACGCCGATGT-TGAAATACcttggatagggcggccccctacccccaccctcggctcttacgcctagcgttgtatacatttct
gi|13 : ---CATGGGTATAGAAGCGTTTCAA-----TTATT--G------------------------G-GGG------------------AGCGGGGTG--------------------CAA-CATGAGGAG---------TGTT----TG-------A--GGA--C------------GTATATGCTGCCCCCCTCC
gi|14 : ---CATGGGCGAAAGAGCGTTTCAA-----TAATG--GCGGGGGA-----------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------GGA-GGGGGGGGGGGGGGAAAATGTTGGGGGG-------G--GGG--G-------GG--GGTATATGTTT-GGTACTCCAACCTGAAcccccccccccccccccccccctgcatacctgaacatttg
gi|15 : GGTGTATGAGCGTTTCAA-----TTATG--G------------------------G-GGGTGGGGTG-GGGCTGTGGGAGAGGGG-C--------------------CAA-CCTTAGGAGAGAGTAAAATAGGGGGGGG-------G--GGG--------------AGTATATGCTG-GCCGCTCCAACCTGAa
gi|16 : ttATGGGCGTGAGAGCGTTTCAA-----TTATT--G------------------------
gi|17 : ATGGGTGTAGGAGCATTT-AA-------ATT--G------------------------GTGGGT-------AGG-----AGAGGGGGGTG--------------------TAA-CCTGA--AGAGAGTAAAATAGTG---TG-------G--GGGTGC-------GA--GGAATTTACTG-GCCCCTCCAACCTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTATG--G------------------------G-GGGT-------------------GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTTGAGT-----------GGG--C-------AA--AGTATATGATG-GCCCCTCCAACC
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGTATATATTTGTACTT-----GTATTCAGTATG---ATAC----AATGCTTAAA---ATATCATGTTAATGTGAATAACATG--AATGAGGTACGATGC--ATATTGATCAGACATGTACAATGTGTCT-CGTTATTACGTATATACCATTTACAGTACAGAATATGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAAC--TTGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTATT--GTGTGTGTGTGTGAGAGTGTGTGGAG-GGGG----GG-GGG-----GGGGGGGGG-GAGGGGGGGGGGGAGAGACAGCAA-ACTGAGTAGAAATTAAAATATT----TG-------G--GGGC-C-------AA--AGTAAATGCTG-GCCCCTCCAACcc
gi|20 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctac---CATGGGCGTAAGAGCGTTTCAA-----TTAGTCCG------------------------G-GGGG----TG-GGG-----ata
gi|21 : ttgccatggataaaaacatattatgaacaAT---CATGGGCATAGGAGCGTTTCAATTTTTTTTTT--G------------------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------taaagtacaaacctg
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTATT--G------------------------G-G-------TG-GGT-----GGAGGGGGG-G--------------------gggggggggggggggggggggggggggatag
gi|25 : T-T-TGTTATTACGTACATGTTAACGA-AGT-CAG-----GATATTAAACAGTTACACGCCGAagcccatctcgcctgaaggaggttg
gi|26 : taacgtattATGGGCGTATGGGCGTTTCAA-----TTAAT--G------------------------G-GG-------G-GGC-----AAA-----------------------------AA-CCTGTGGAGGGAGTggctg
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTATT--G------------------------gtgagaggga
gi|28 : A--AC-----ATGC--AT---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA----A------------------------G-GGGT----TG-GGGT----GGAGGGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATATT---------------------------------------------------GGGCGA-C--------------------CAA-CCTGAGGAGAGAGTA
gi|3 : agCTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA-----------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTGAAATCGACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGTG--GTCATTGAAATAACATG-ACAAT-TG-----------ACGTGCGTCCCATTGA---TAC-GAATTCGGTATTAA-TAAATA------AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGTGGGG-G--------------------CAG-CCTGAGGAGATAGTNNNNNNNNNNNNNN-------N--NNN--N-------NN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNCAACCCCCt
gi|30 : TATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTATccggg
gi|31 : --AT---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA-T--G------------------------G-GGGT----TG-GGG-----
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGG------G-GGG-----GGGGat
gi|33 : gTGGGCGGAGGAGCGTTTCAA-----TTATC--G------------------------G-GG------TG-GGG-----G
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAG-TCATTTAAGTACAAA--TA-------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTATAATCGACATTATATT-ATATAGAT-ACATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TGC-----------CGTGCATCCCATTGA---TACGAATTATAATA-CGAATAAATAC------ATATATAAAGT-TACATTAT-C----CTTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-C--AT---G-CAT---C
gi|5 : GC-TTA--A------AC-C--ACTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTA-T--G------------------------G-GGGG----TG-GTG-----GTGGGGCTG-G--------------------CAA-CCTCAGGAGA
gi|6 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgTTGATACAATTTAATTGAAATCTAAGCTTACATT--GTA--CCTA-------AATCAA----TATTCAATATGAATCAATGCTTAATGCTTAAA---ATGTCTTGTTAATGTTAATAATATG--AATGTGGTACAATGC--ATGTTAATCAGACGTACAAAATGGGT-T-CGTTATTACGTTCAT----------------AATATGATGTTAAAGAGAAACACGCCAATGTtaatg
gi|7 : aatacATGGGCGTAGGGGCATTTCAA-----TTATT--G------------------------A-GAA------------------------G-G--------------------CAAACCTGAGGAGAGAGT---ATATGGGGATG-------ATTGAG----------AA--AGTTTATGCTG-GACCC-CCAACCTGAACA
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTATT--G------------------------G-G-------TGCGGT-----GGAGGGGGG-G--------------------CAA-ACTGGGGAGAGAGT---GCATGAGGATGT------A--TGA--T-------AA--AGAGTATACT--GCACCCCCACCCtctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|9 : G-GGG-----GGAGGGGGG-G--------------------AAG-CCTGATGAGAGAGGGTAATGGTGTAATG-------A--GGA--TGTATGAGAA--AGTTTATGCTG-GCCCC-ACAACCAGAACAccacacacactcacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA
Alignments
lowQualScore : 1 55555555555 11 11111111 44444444444444444 222 22 222 1 1 11111 22222 1 1 33333 1 11 2222222222222222 111 22222222222222222222222222222222222 1111111111111111111111 33333333333333333333333333333333333
lowQualScore : 1 5 777 1 77777777777 33 3 33 77777777 11111111111111111 1 000 66 1 11 55 22 1 55 666 222 3 0 99999 0 7 1 99999 5 1 3 1 2 5 9 6 55555 7 3 44 77 8 99 1111111111111111 5 000 44444 22 66666666666666666666666666666666666 1 66666 0 8888888888888888888888 2 666 00000000000000000000000000000000000 3 2
lowQualScore : . . ... . ........... .. . .. ........ ................. . ... .. . .. .. .. . .. ... ... . . ..... . . . ..... . . . . . . . . ..... . . .. .. . .. ................ . ... ..... .. ................................... . ..... . ...................... . ... ................................... . .
lowQualScore : 0 5 555 0 55555555555 88 2 22 22222222 22222222222222222 0 555 55 4 66 88 00 4 22 444 888 6 0 22222 3 5 0 77777 7 0 2 0 2 5 0 7 00000 3 3 00 88 0 22 0000000000000000 7 777 22222 44 22222222222222222222222222222222222 8 11111 3 9999999999999999999999 5 555 88888888888888888888888888888888888 1 3
consensus : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
Reference ( family-2827 ) : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
gi|1 : ATGGGCGTAAGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GAAGTGGGG-A--------------------CAG-CCTGAGGAGATAGTAAAATATTGAGATA-------G--AGG--C-------AA--AGTATATGCTG-GCTCCTACAACCTAAACAAACCCCC
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTATT---------------------------G-GGGT-------------------AGGGG-C--------------------CAA-CCTCAGGAGAGAGT---GTATAATGATGTATTTCCA--GGC--C-------AGATAGTATATGCTG---------AACCTGAATAacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|11 : aGG-----GGGGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAGATA-TG----G-------G--GGA--T-------AA--AGCATATGCTG-GCCCCTCCAACCTGAGCtcctgaatattggtatatagttttggccccgtccaagctccctg
gi|12 : GTGAATAATATG--AATTTTGTAC--TATGAATGGTGATCAGACGTGTATAATGTGT-TTCGTTATTAAGTACATGCCATTAACAGAACAGAAGATGATGTTAAAGAGATACACGCCGATGT-TGAAATACcttggatagggcggccccctacccccaccctcggctcttacgcctagcgttgtatacatttct
gi|13 : ---CATGGGTATAGAAGCGTTTCAA-----TTATT--G------------------------G-GGG------------------AGCGGGGTG--------------------CAA-CATGAGGAG---------TGTT----TG-------A--GGA--C------------GTATATGCTGCCCCCCTCC
gi|14 : ---CATGGGCGAAAGAGCGTTTCAA-----TAATG--GCGGGGGA-----------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------GGA-GGGGGGGGGGGGGGAAAATGTTGGGGGG-------G--GGG--G-------GG--GGTATATGTTT-GGTACTCCAACCTGAAcccccccccccccccccccccctgcatacctgaacatttg
gi|15 : GGTGTATGAGCGTTTCAA-----TTATG--G------------------------G-GGGTGGGGTG-GGGCTGTGGGAGAGGGG-C--------------------CAA-CCTTAGGAGAGAGTAAAATAGGGGGGGG-------G--GGG--------------AGTATATGCTG-GCCGCTCCAACCTGAa
gi|16 : ttATGGGCGTGAGAGCGTTTCAA-----TTATT--G------------------------
gi|17 : ATGGGTGTAGGAGCATTT-AA-------ATT--G------------------------GTGGGT-------AGG-----AGAGGGGGGTG--------------------TAA-CCTGA--AGAGAGTAAAATAGTG---TG-------G--GGGTGC-------GA--GGAATTTACTG-GCCCCTCCAACCTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTATG--G------------------------G-GGGT-------------------GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTTGAGT-----------GGG--C-------AA--AGTATATGATG-GCCCCTCCAACC
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGTATATATTTGTACTT-----GTATTCAGTATG---ATAC----AATGCTTAAA---ATATCATGTTAATGTGAATAACATG--AATGAGGTACGATGC--ATATTGATCAGACATGTACAATGTGTCT-CGTTATTACGTATATACCATTTACAGTACAGAATATGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAAC--TTGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTATT--GTGTGTGTGTGTGAGAGTGTGTGGAG-GGGG----GG-GGG-----GGGGGGGGG-GAGGGGGGGGGGGAGAGACAGCAA-ACTGAGTAGAAATTAAAATATT----TG-------G--GGGC-C-------AA--AGTAAATGCTG-GCCCCTCCAACcc
gi|20 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctac---CATGGGCGTAAGAGCGTTTCAA-----TTAGTCCG------------------------G-GGGG----TG-GGG-----ata
gi|21 : ttgccatggataaaaacatattatgaacaAT---CATGGGCATAGGAGCGTTTCAATTTTTTTTTT--G------------------------G-GGG------G-GGG-----GGGGGGGGG-G--------------------taaagtacaaacctg
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTATT--G------------------------G-G-------TG-GGT-----GGAGGGGGG-G--------------------gggggggggggggggggggggggggggatag
gi|25 : T-T-TGTTATTACGTACATGTTAACGA-AGT-CAG-----GATATTAAACAGTTACACGCCGAagcccatctcgcctgaaggaggttg
gi|26 : taacgtattATGGGCGTATGGGCGTTTCAA-----TTAAT--G------------------------G-GG-------G-GGC-----AAA-----------------------------AA-CCTGTGGAGGGAGTggctg
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTATT--G------------------------gtgagaggga
gi|28 : A--AC-----ATGC--AT---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA----A------------------------G-GGGT----TG-GGGT----GGAGGGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATATT---------------------------------------------------GGGCGA-C--------------------CAA-CCTGAGGAGAGAGTA
gi|3 : agCTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA-----------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTGAAATCGACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGTG--GTCATTGAAATAACATG-ACAAT-TG-----------ACGTGCGTCCCATTGA---TAC-GAATTCGGTATTAA-TAAATA------AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGTGGGG-G--------------------CAG-CCTGAGGAGATAGTNNNNNNNNNNNNNN-------N--NNN--N-------NN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNCAACCCCCt
gi|30 : TATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTATccggg
gi|31 : --AT---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA-T--G------------------------G-GGGT----TG-GGG-----
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGG------G-GGG-----GGGGat
gi|33 : gTGGGCGGAGGAGCGTTTCAA-----TTATC--G------------------------G-GG------TG-GGG-----G
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAG-TCATTTAAGTACAAA--TA-------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTATAATCGACATTATATT-ATATAGAT-ACATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TGC-----------CGTGCATCCCATTGA---TACGAATTATAATA-CGAATAAATAC------ATATATAAAGT-TACATTAT-C----CTTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-C--AT---G-CAT---C
gi|5 : GC-TTA--A------AC-C--ACTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTA-T--G------------------------G-GGGG----TG-GTG-----GTGGGGCTG-G--------------------CAA-CCTCAGGAGA
gi|6 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgTTGATACAATTTAATTGAAATCTAAGCTTACATT--GTA--CCTA-------AATCAA----TATTCAATATGAATCAATGCTTAATGCTTAAA---ATGTCTTGTTAATGTTAATAATATG--AATGTGGTACAATGC--ATGTTAATCAGACGTACAAAATGGGT-T-CGTTATTACGTTCAT----------------AATATGATGTTAAAGAGAAACACGCCAATGTtaatg
gi|7 : aatacATGGGCGTAGGGGCATTTCAA-----TTATT--G------------------------A-GAA------------------------G-G--------------------CAAACCTGAGGAGAGAGT---ATATGGGGATG-------ATTGAG----------AA--AGTTTATGCTG-GACCC-CCAACCTGAACA
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTATT--G------------------------G-G-------TGCGGT-----GGAGGGGGG-G--------------------CAA-ACTGGGGAGAGAGT---GCATGAGGATGT------A--TGA--T-------AA--AGAGTATACT--GCACCCCCACCCtctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|9 : G-GGG-----GGAGGGGGG-G--------------------AAG-CCTGATGAGAGAGGGTAATGGTGTAATG-------A--GGA--TGTATGAGAA--AGTTTATGCTG-GCCCC-ACAACCAGAACAccacacacactcacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
blockSeqs : A A TTT A CTTACATTG . T TC AAAGGGT AATATGAATCAATGCTT G TCG AA G AA TA AG A GA GGG TCA T G TCTC A T CAGTA A G A A A A G C C T . A TA . GG ACCACTTG . AAC TTTTT CC TGTGTGTGTGTGAGAGTGTGTGGAGGGGGG C CTGTG GAGGGGGGGGGGGAGAGACAG A AAG TAATGATGTATTTCCAGGCCAGAT C T
blockSeqs : . GT A TA . T TC AAAGGGT GCGAC A TCG A A AA TA AT T AG C AAT C G TTT G G AGT A C A G G A . . . T . A CA . . ATGCAT . G . . CGGGGGAGGGG . T TG . AAA GTGTAATGAGGATGTATGAGAA . T
blockSeqs : . GT C . . . . AATA GCGAC T . A A A . AT T AG G AAT . . TTC C G TA G T A G A . . TG . . ACCAT . G . . GGGGTGGGGT . . TG . AAA TGGGGATGATTGAGAA . T
blockSeqs : T A . TG A AA C TCA . . C C G TA . T . . A . . ACCAT . . . . GTGGGT . . C . AAA TGAGGATGTATGATAA . T
blockSeqs : . . . . . G . . . . A . . . . GGGGGT . . G . AAA TTGGGGGGGGGGGGG . T
blockSeqs : . . . . GGGGTT . . G . AAA NNNNNNNNNNNNNNN . T
blockSeqs : . . . GGGGTT . . C . NNN GTGTGGGGGTGCGA . T
blockSeqs : . . . GGGGTT . . G . GTA TTTGAGTGGGCAA . N
blockSeqs : . . . GGGGGT . . G . . GGGGGGGGGGGG . C
blockSeqs : . . . GGGGT . . G . . TTTGGGGGCCAA . .
blockSeqs : . . . GGGGT . . C . . TGGGGGATAA . .
blockSeqs : . . . GGGG . . G . . TTTGAGGAC . .
blockSeqs : . . . GGGG . . G .
blockSeqs : . . GGGG . . G .
blockSeqs : . . GGGT . . G .
blockSeqs : . . AGAA . . G
blockSeqs : . . GGT . . .
blockSeqs : . . GGG . .
blockSeqs : . . GGT . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : A* ** AG C** TTC** GTA** ACCAT*********** TGGGGATGNTGGGAA********************
originalCons : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAGTGCGGACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATTGA-AGTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATTGGGATG-------G--GGG--C-------AA--AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
finalCons : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATA-CATG--AATGATGTACAGTGC--ACGTTGATCAGACGTGTACAATGTGTTC--GTTATTACGTACATNCCATTGAGTA--CAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--ACACCAT-----------G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAGGGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAATATGGGGATGNTGGGAA--------------------AGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA
Alignments
lowQualScore : 1 55555555555 11 11111111 44444444444444444 222 2 22 11 1 1 11111 3333333333 1 1 33333 1 11 2222222222222222 111 22222222222222222222222222222222222 11111111111111111111 1111111111 33333333333333333
lowQualScore : 1 5 777 1 77777777777 33 3 33 77777777 11111111111111111 1 000 66 1 4 22 22 1 11 5 222 3 0 99999 0 7 4444444444 5 1 3 1 2 5 9 6 55555 7 3 44 77 8 99 1111111111111111 5 000 44444 22 99999999999999999999999999999999999 1 66666 0 2 2 88888888888888888888 2 666 2222222222 1 44444444444444444 3 2
lowQualScore : . . ... . ........... .. . .. ........ ................. . ... .. . . .. .. . .. . ... . . ..... . . .......... . . . . . . . . ..... . . .. .. . .. ................ . ... ..... .. ................................... . ..... . . . .................... . ... .......... . ................. . .
lowQualScore : 0 5 555 0 55555555555 88 2 22 22222222 22222222222222222 0 555 55 4 0 00 00 4 00 0 888 6 0 22222 3 5 3333333333 7 0 2 0 2 5 0 7 00000 3 3 00 88 0 22 0000000000000000 7 777 22222 44 88888888888888888888888888888888888 8 11111 3 0 2 11111111111111111111 5 555 5555555555 7 99999999999999999 1 3
consensus : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATAACATGTAAATGATGTACAAT--GNACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATT--G-A--GTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAG-GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAAT------A---TGGGGATG-NT-----GG---GAAAGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
Reference ( family-2827 ) : CTATTGAAAATAAACCGAANACAACATCAATCGTTGATACAANTTCATTTAAATNCAAACTTACATC--GTA--TATATATTTTCAATTAAAGGGTATTCAGTATG---CGAC----AATGCTNAAATCGACATCATGTTAATGTGAATA-CATG--AATGATGTACAGT--GCACGTTGATCAGACGTGTACAATGTGT-T-CGTTATTACGTACATNCCATT--G-A--GTACAGAATATGATGTTAAANAGATACACGCCGATATATGAAGTGCACATTATCC----CTTATTAATAAT-ATACCGAACG-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAG-GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAAT------A---TGGGGATG-NT-----GG---GAAAGTATATGCTG-GCCCCTCCAACCTGAACAAACCCCC
gi|1 : ATGGGCGTAAGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GAAG-TGGGG-A--------------------CAG-CCTGAGGAGATAGTAAAAT------A---TTGAGATA-GA-----GG---CAAAGTATATGCTG-GCTCCTACAACCTAAACAAACCCCC
gi|10 : GGGCGCAGGAGCGTTTCAA-----TTATT---------------------------G-GGGT--------------------AGGGG-C--------------------CAA-CCTCAGGAGAGAGT---GT------A---TAATGATGTATTTCCAGGCCAGATAGTATATGCTG---------AACCTGAATAacccccggcccccgactcctacgtctatgtgtatacatttgaatacaaatatgtagcctgtcaatcttacctttgtaactaatctgctggagtttgcgtcttcagttggcatctgcttctgtcccttggtcataaacgatggcatttcggcttttattccaaggttcgccaacaattctacagcatctcgaaatcccctgtcaactataaatacatcctcgggctgtatgtatgatttaatatcttcaatatttgtcatgagcatgtagtttagtattctagcatcgttgttttttgagtccgatagatatggacctacaattgttacaaaatatcctgtagtcgacaccactaccattggctttacaagtggtctgcccttatgcatactgtatgaccttcgctggaaaaggaaataggattcatcggtcccaaacaatgactgtgctagtgggcgtgtgtgggtatttattaagacttcccttgcaatgtgatgaagtcccaagtgtttgggtacgaatgttttcataaggatctgtcggacagatgtgatggccctccttatactagactttgatataccgaatagtgtccctattaatttgtttgacatccccgacttcagttttaaaaggaatataccaactgtagtacgaatatttctggaaggcgtgttacgtatgt
gi|11 : aGG-----GGGG-GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAGAT------A---TGGGG--G-AT-----------AAAGCATATGCTG-GCCCCTCCAACCTGAGCtcctgaatattggtatatagttttggccccgtccaagctccctg
gi|12 : GTGAATAATATG--AATTTTGTACTAT--GAATGGTGATCAGACGTGTATAATGTGT-TTCGTTATTAAGTACATGCCATT--A-ACAGAACAGAAGATGATGTTAAAGAGATACACGCCGATGT-TGAAATACcttggatagggcggccccctacccccaccctcggctcttacgcctagcgttgtatacatttct
gi|13 : ---CATGGGTATAGAAGCGTTTCAA-----TTATT----------------------------------------GGG-----GGAGCGGGGT-G--------------------CAA-CATGAGGAG---------T------G---T--------TT-----GA---GGACGTATATGCTGCCCCCCTCC
gi|14 : ---CATGGGCGAAAGAGCGTTTCAA-----TAATG--GCGGGGGA-----------------G-GGG------G-GGG-----GGGG-GGGGG-G--------------------GGA-GGGGGGGGGGGGGGAAAAT------G---TTGGGGGG-GG-----GG---GGGGGTATATGTTT-GGTACTCCAACCTGAAcccccccccccccccccccccctgcatacctgaacatttg
gi|15 : GGTGTATGAGCGTTTCAA-----TTATG--G------------------------G-GGGTGGGGTG-GGGCTGTGGGAG-AGGGG-C--------------------CAA-CCTTAGGAGAGAGTAAAAT------A----GGGG--G-GG-----GG---GGGAGTATATGCTG-GCCGCTCCAACCTGAa
gi|16 : ttATGGGCGTGAGAGCGTTTCAA-----TTATT--G------------------------
gi|17 : ATGGGTGTAGGAGCATTT-AA-------ATT--G------------------------GTGGGT-------AGG-----AGAG-GGGGGTG--------------------TAA-CCTGA--AGAGAGTAAAAT------AGTGTGGGGGTG-CG-----AG---GA----ATTTACTG-GCCCCTCCAACCTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgcaacctaaaccggcccctacgcctg
gi|18 : ATGGGCGTAGCAGCGTTTCAA-----TTATG--G------------------------G-GGGT--------------------GGGGG-G--------------------CAA-CCTGAGGAGAGAGTAAAAT------A---TTTGAGTG--------GG---CAAAGTATATGATG-GCCCCTCCAACC
gi|2 : TTGATACAATTTCATTTAAATCTAAACTTATATCTGATAAGTATATATTTGTACTT-----GTATTCAGTATG---ATAC----AATGCTTAAA---ATATCATGTTAATGTGAATAACATG--AATGAGGTACGAT--GCATATTGATCAGACATGTACAATGTGTCT-CGTTATTACGTATATACCATTTAC-A--GTACAGAATATGATGTTAAAGAGATACACACCAATAT-TGGAATGCAAATTACCCAGGACTTA--AACAATGAGATGGAGCGCGAACAAAC--TTGCATTA--ACTCTTGAC-TAAAT---GTCAT---CATGGGTGTAGGAGCGTTTCAA-----TTATT--GTGTGTGTGTGTGAGAGTGTGTGGAG-GGGG----GG-GGG-----GGGG-GGGGG-GAGGGGGGGGGGGAGAGACAGCAA-ACTGAGTAGAAATTAAAAT------ATT-TGGGG--G-CC-----------AAAGTAAATGCTG-GCCCCTCCAACcc
gi|20 : tgacagcttataacataccccggcacataaaatgtcaggtactggagcgaacttccctac---CATGGGCGTAAGAGCGTTTCAA-----TTAGTCCG------------------------G-GGGG----TG-GGG-----ata
gi|21 : ttgccatggataaaaacatattatgaacaAT---CATGGGCATAGGAGCGTTTCAATTTTTTTTTT--G------------------------G-GGG------G-GGG-----GGGG-GGGGG-G--------------------taaagtacaaacctg
gi|24 : TGGGTGTAGGGGCGTTTCAA-----TTATT--G------------------------G-G-------TG-GGT-----GGAG-GGGGG-G--------------------gggggggggggggggggggggggggggatag
gi|25 : T-T-TGTTATTACGTACATGTTAAC--GAA--GT-CAG-----GATATTAAACAGTTACACGCCGAagcccatctcgcctgaaggaggttg
gi|26 : taacgtattATGGGCGTATGGGCGTTTCAA-----TTAAT--G------------------------G-GG-------G-GGC-----AAA------------------------------AA-CCTGTGGAGGGAGTggctg
gi|27 : T---CAAGGTCGTAGAGGCGTTTCAA-----TTATT--G------------------------gtgagaggga
gi|28 : A--AC-----ATGC--AT---G-CATG--CATGGGCGAAGGACCGTTTCAA-----TTA----A------------------------G-GGGT----TG-GGGT----GGAG-GGtgtgtgtgtgtgtgtgtgtgaggtgggggg
gi|29 : ---CGTGGGTGTAGAA-CGTTTCAA-----ATATT---------------------------------------------------G-GGCGA-C--------------------CAA-CCTGAGGAGAGAGTA
gi|3 : agCTATTAAAAATAAACTGAACACAACATCAATCGTTG-TACAAGT-CATTTAAATACAAA-----------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTGAAATCGACATTATATTA-TATAGATA-CATGTAAATGATTTTCAGT--GGTCATTGAAATAACATG-ACAAT-TG-----------ACGTGCGTCCCATT--G-A---TAC-GAATTCGGTATTAA-TAAATA------AATATATAAAGT-TACATTATCC-----TTATTAATAAT-ATACCGAACA-GGATAAATTATTGC-TCA--AC-----AC-C--AT---G-CAT---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGGT----TG-GGG-----GGAG-TGGGG-G--------------------CAG-CCTGAGGAGATAGTNNNNN------N---NNNNNNNN-NN-----NN---NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNCAACCCCCt
gi|30 : TATATCATTGC-TCGGGAC-----A----------G-TTT---CATGGGCGTAGGAGCGTTTCAA-----TTATccggg
gi|31 : --AT---A-CATAACCATGGGCGTAAGAACGTTTCAA-----TTA-T--G------------------------G-GGGT----TG-GGG-----
gi|32 : ---CATGGGCGTAGGAGCGTTTCAA-----TTATT--G------------------------G-GGG------G-GGG-----GGGG-at
gi|33 : gTGGGCGGAGGAGCGTTTCAA-----TTATC--G------------------------G-GG------TG-GGG-----G
gi|4 : CTATTGAAAATAAACCGAAAACAACATCAATCGTTG-TACAAG-TCATTTAAGTACAAA--TA-------TA--TATATATTTTCAATTAAAGGGT-TTC-----G---CGAC----AATGTTATAATCGACATTATATT-ATATAGATA-CATGTAAATAATTTTCAGTGGGGACATTGAAATAACATG-ACAAT-TGC-----------CGTGCATCCCATT--G-A---TACGAATTATAATA-CGAATAAATAC------ATATATAAAGT-TACATTAT-C----CTTATTAATAAT-ATACCGAACA-GGATGAATTGTTGC-TCA--AC-----AC-C--AT---G-CAT---C
gi|5 : GC-TTA--A------AC-C--ACTTGG-TATG--CATGGGCGTAGGGGCGTTTCAA-----TTA-T--G------------------------G-GGGG----TG-GTG-----GTGG-GGCTG-G--------------------CAA-CCTCAGGAGA
gi|6 : tggcggaagcatatattgtgcatgtcgaattgttttgtataaaaaaatatctttcaaattttttctattcatatattttctgtttataatacattatgcattatctcagatgttgctttgttcacgggaacagggggtgaatgttgctgctctatctgTTGATACAATTTAATTGAAATCTAAGCTTACATT--GTA--CCTA-------AATCAA----TATTCAATATGAATCAATGCTTAATGCTTAAA---ATGTCTTGTTAATGTTAATAATATG--AATGTGGTACAAT--GCATGTTAATCAGACGTACAAAATGGGT-T-CGTTATTACGTTCAT-------------------AATATGATGTTAAAGAGAAACACGCCAATGTtaatg
gi|7 : aatacATGGGCGTAGGGGCATTTCAA-----TTATT--G------------------------A-GAA-------------------------G-G--------------------CAAACCTGAGGAGAGAGT---AT------A---TGGGGATGATT-----GA---GAAAGTTTATGCTG-GACCC-CCAACCTGAACA
gi|8 : GGGCGAAGAAGCGTTTCAA-----TTATT--G------------------------G-G-------TGCGGT-----GGAG-GGGGG-G--------------------CAA-ACTGGGGAGAGAGT---GC------A---TGAGGATGTAT-----GA---TAAAGAGTATACT--GCACCCCCACCCtctgggaggaggtttgggcccccctggctccctgccccctggccaatacgcctgtgtataaggttcttggatataccaaataatatag
gi|9 : G-GGG-----GGAG-GGGGG-G--------------------AAG-CCTGATGAGAGAGGGTAATGGTGTAA---TGAGGATGTAT-----GA---GAAAGTTTATGCTG-GCCCC-ACAACCAGAACAccacacacactcacatgaacattgagagggggttgcgtcaaccgtacccctttccttaatgtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAGTATAATGCCGGGTGCCACAACATGAACAAGGCCCCCGACACCTACTCGTATGTCTGTCTGGATTTTATAATATATATCTGTTTAGTTTACCTT
Unaligned ( gi|22 ): AAGGTTTGTGTTAGCCCCCCCGACCTGTACATGGGGGGGGGGGGTCCCCCTGCCTCCCCGATTCCTACGCCTAAGTATAA
Unaligned ( gi|23 ): GGAACCAATATCTGGATACACGACGGTATGGTGTGAACCGGAGAAATCGCTTACACCGTAACTTTTTCTA