lowQualScore : 1111111111111111111 11111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 4444444444444444444 2222222222 11 11 444 2222 33 1 55555 1 2 0000000000000000000 1 22 222 4 222 33 22222222222222222222222222 11 222 4444444444444 333333333333 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1
lowQualScore : 8888888888888888888 1111111111 66 11 6 2 555 7777 11 7 55 33333 0 0 6666666666666666666 6 5 11 2 444 0 000 6 6 22 00000000000000000000000000 00 555 1111111111111 4 1 444444444444 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5
lowQualScore : ................... .......... .. .. . . ... .... .. . .. ..... . . ................... . . .. . ... . ... . . .. .......................... .. ... ............. . . ............ . ........................................................................................................... .
lowQualScore : 8888888888888888888 2222222222 88 00 7 5 000 0000 00 0 00 00000 5 0 5555555555555555555 0 0 00 5 000 0 000 0 0 00 77777777777777777777777777 77 333 3333333333333 0 0 555555555555 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAGAACATTCAAGAGTGTTTGTTTGAATATTNAGC--ATCATTTT-ATGCCATCGAGGGC--TAACANACAACC--TTAACATCACCACTCTTTCCTATGTCCCTGNNAGACAGTTANCCAGTTACT--AGACACACNCGGTCCTTTCTCTGCAAGTCACCGGCTNCTTCGCCACATAA-TCAGAGGTGGGAAACTCATGAT--TGCAGAACAGAGTACATACATG-CCAATCGTCATAAAGACTG--TTGTCGGGC-GAGATTCAAACTNACGACCCCTGGATTGATAGTGAGACGCGCTANCGGCTNAGCTAACCANGCCTAGCAGGGATTATACAA-GATNNAGNTATNTCAATGTTNTGNANA--CGGTGTTANAGTTTGTCACATCTCTAAANCACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
Reference ( gi|1 ) : TAAAAATCCATATAATAGGTCTGTCTAACATACCATATCACAGTTTGCATTTATAAGCACACTTTTAAAAAATATGAGTTATCACTGATGTTACACACTCTATGATTTGGTTTATTTAGC---ACAAAACATTAAGGACTGTTTGTTTGAATATCTAGC--ATCATTTT-ATGCCATCGAGGGC--TAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAGA---TTAACCAGT-ACTCAAGA-ACATCGA------TCTCCGCAAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATGAGAATGAGGCACAATGT-TGTACA---CCAATCATCATGGAGACTG--TTGCTGAGCAGAGATTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACCATGCCT-GAAGGAACTATAAAAGGATCGAATCATCTCAA-GTTATGTACATTTGATGTCAA---TTG---C-TCTCTAAACTATGTTCAAAAGTGCATAA-----ACATGTAACCATTTCTTCGTAATAAATGATATATAAAAAGAAG
gi|12 : ATTTAGCTGAATAGAA-ATTCAAGAGTATTTTTTT-AATATCATGC--ATCATTTTTATGCTATCGAGGGC--
gi|14 : AAC---AAAAAACAT---AGA---TTTGTTTGAATATTAAGCTGAT--TTTT-ATGCCATTGAGGGCAATAA-ATATAATCacaac
gi|15 : GAATGTTCATTTGAATATTTAGC--ATCATTTT-ATGTCACAGAGAGA--TAACA
gi|13 : TGTTTGTTTGAATAT----------ATTCT---GCCATCATGGGC--TTACAGACAAC---TTAACATCACCACTCTTTCC-ATG
gi|16 : ataTGTTTGTTTGAATATGTAGC--ATAATTTTAATGCCATCTGGGAC--gat
gi|7 : TTCCT-TGTCTCTGCTAGACAGTTAGCCAGT-ACT---AA-ACATACA------TCTCTGCAAGTCACCAGCTTCTTCCC
gi|2 : agtttttaatgttggttcaataTCCTGGGA-----TTACCTAGTTACT--AGACACACCAGGTCCTTTCTCTGCAAGTCACTGACTACTTTGCCACATAA-TCAGAGGTGGGAAACTCATGAT--TGCAGAACAGAGT-T---CATGGCCAATCGTCATACAGACTG--TAGTCAGGCAAAGATTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTAA--AT-------AGGAAT--------GA-CG-ATTATATCAATGTTTTGTATA--CGATGTTAC---TTGTCAC-TTTC---ACCATGacattcagaagtgggaaactc
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatcttACAAAGTACATACATATCCAATCATCATAAAGATTG--TTTTAGATC-GAGGTACCAAATAACGACCACTGAATcagtttttcaatgactgt
gi|8 : tgctatacatgtcggtgactacttctccatatattgacaggtaggatatttaccagcttataA---CCAAT--TCA--AAGACTGGTTTGGTGGG----GATTCATACTGGTGACCCCTGG
gi|5 : actttattaaaactaattcaaagggtgactcatggctgtagaacaaagatcaagACATGCTACTGGCTGAGCTAACCAAGCCTAGCAGGGA-TATACAA--ATACAGGTATTTTAA-A-TATGAAAA--TGGTGTTAAAGTTTG---CATCTCTAAAATACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TTGTATGCTTTTTTTCTCATTTTTTCAAAACAATACTTCGGTTATTTAACGGTGGTCAGTACACATAATCACCAGTCTGGGAGTCTTAATTAGGTGGTTACCAGACACACTGTACCACTGTGAAGTCGCTG
Unaligned ( gi|6 ): TCAGAGGTTGTAGATTCATTACAGTAGAACAAAGCTCATGGCAATTATCACACAGACTTGGGGGCAGGCGGGGTTTCGGACTTAAGACCATTAAATAACTAGATAGATGGTAAAAAAACTT
Unaligned ( gi|9 ): CACTGTTTCTGGGATTCACCTGCGTACCAAACATACCATGCAAGTCACGGACTGTTTTTCCACATACTTAATGGTG
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA
Unaligned ( gi|11 ): ACCATCATTAAAACAAAGTTCATGGCCGATTGTTACAAGAGACTGTAGGGATTCAGTTTCATGACCCCTCGA
Alignments
lowQualScore : 222 11 1 11 444 11 33333 11 11 6666666666 1 111 33333333 55555555555555555 22222222222222 1111111111 4444444444444444 22 111 555555555555 2222 1 1 22222
lowQualScore : 111 1 0 6 44 2 1 11 99 888 6 3 1 222 3 2 44 11 22 44444 1 44 88 6 7777777777 1 2 1 5 444 2 11111111 3 99999999999999999 55 88 6 99999999999999 6 0 1 2 66 6 1 0 1 0000000000 3 0 4444444444444444 1 22 1 1 1 999 0 888888888888 7 11 0 8888 3 3 66666 2
lowQualScore : ... . . . .. . . .. .. ... . . . ... . . .. .. .. ..... . .. .. . .......... . . . . ... . ........ . ................. .. .. . .............. . . . . .. . . . . .......... . . ................ . .. . . . ... . ............ . .. . .... . . ..... .
lowQualScore : 000 0 7 7 00 8 0 55 22 333 7 2 0 555 0 5 77 33 00 33333 0 77 33 7 3333333333 4 8 0 0 666 8 00000000 3 22222222222222222 88 22 7 22222222222222 7 3 0 2 55 7 0 7 0 0000000000 7 7 3333333333333333 0 77 0 0 0 000 7 333333333333 3 77 7 3333 3 3 55555 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAGANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAGA---TTANCCAGTTACT--AGACACACC-GG-----TCTCTGCAAGTCACCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCATNACTGC--AGAACAAAGT-CA------TGCA-G-CCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAAT-ATA-AA-GAT--AG-TATNTCAA-GTTATGTANA--CGATGTTAA---TTGC--C-TCTCTAAACTACG----TTCTAAA-TG-ATAATTCTCACNTGTAAC
Reference ( family-2818 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAGAACATTCAAGAGTGTTTGTTTGAATATTNAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACANACAACC--TTAACATCACCACTCTTTCCTATGTCCCTGNNAGACAGTTANCCAGTTACT--AGACACACNCGGTCCTTTCTCTGCAAGTCACCGGCTNCTTCGCCACAT-AATCAGAGGTGGGAAACTCATGATTGC--AGAACAGAGTACA------TACATG-CCAATCGTCATAA-AGAC-TG--TTGTCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTGAGACGCGCTANCGGCTNAGCTAACCANGCCTAGCAGGGATTATACAA-GATNNAGNTATNTCAATGTTNTGNANA--CGGTGTTANAGTTTGTCACATCTCTAAANCACG----TTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|1 : ATTTAGC---ACAAAACATTAAGGACTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAGA---TTAACCAG-TACTCAAGA-ACA-TCGA-----TCTCCGCAAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATG-------AGAATGAGGCACAATGTTGTACA---CCAATCATCATGG-AGAC-TG--TTGCTGAGCAGAGA-TTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACCATGCCT-GAAGGAACTATAAAAGGATCGAATCATCTCAA-GTTATGTACATTTGATGTCAA---TTGC----TCTCTAAACTATG----TTCAAAAGTGCATAA-----ACATGTAAC
gi|11 : taaaaatccatataataggtctgtctaacataccatatcacagtttgcatttataagcacacttttaaaaaatatgagttatcactgatgttacacactctatgatttggtttCATCATT----AAAACAAAGTTCA------TG---G-CCGATTGTTACAAGAGAC-TG--T----AGG----GA-TTCAGTTTCATGACCCCTCGAcatttcttcgtaataaatgatatataaaaagaag
gi|12 : acATTTAGCTGAATAGAA-ATTCAAGAGTATTT-TTTTAATATCATGC--ATCATTTTT-ATGCTATCGAGGGC
gi|13 : TGTTTGTTTGAATAT----------A-TTCT---GCCATCATGGGCTTACAGACAAC---TTAACATCACCACTCTTTCC-ATGacaac
gi|14 : ataAAAAAACAT---AGA---TTTGTTTGAATATTAAGCTGAT---TTTT-ATGCCATTGAGGGC-AATAAATAgat
gi|15 : aacGAATGTTCATTTGAATATTTAGC--ATCA-TTTT-ATGTCACAGAGAGATAACAtaatc
gi|16 : TGTTTGTTTGAATATGTAGC--ATAA-TTTTAATGCCATCTGGGAC
gi|2 : TTCCTGGGA-----TTACCTAGTTACT--AGACACACCAGGTCCTTTCTCTGCAAGTCACTGACTACTTTGCCACAT-AATCAGAGGTGGGAAACTCATGATTGC--AGAACAGAGTTCA------TG---G-CCAATCGTCATAC-AGAC-TG--TAGTCAGGCAAAGA-TTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTA---------AATAGGAATGAC-----GAT-----TATATCAATGTTTTGTATA--CGATGTTAC---TTGTCAC-TTTC---ACCATGCAGTTTTTCAA-TG-A
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatctCTATACATGTCGGTGACTACTTCTCCATAT-ATTGACAGGTAGGATATTTACCA--GCTTATAACAAAGTACA------TACATATCCAATCATCATAA-AGAT-TG--TTTTAGATC-GAGG-TACCAAATAACGACCACTGAATctgt
gi|5 : tgACATGCTACTGGCTGAGCTAACCAAGCCTAGCAGGGAT-ATACAA--ATACAGGTATTTTAAA--TATGAAAA--TGGTGTTAAAGTTTG---CATCTCTAAAATACG----TTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|6 : TCAGAGGTTGTAGATTCATTACAGT--AGAACAAAGC---------T-CATG-GCAATTATCACAC-AGACTTG--GGGGCAGGC-GGGGTTTCGGACTTAAGACC
gi|7 : TTCCT-TGTCTCTGCTAGACAGTTAGCCAGT-ACT--AAACATACA--------TCTCTGCAAGTCACCAGCTTCTTC-CCACAT---TCAGAAGTGGGAAACTCattaaataactagatagatggtaaaaaaactt
gi|8 : agtttttaatgttggttcaataGGGTGACTCATGGCTGT--AGAACAAAG---A------T-CAAGACCAAT--TC--AA-AGAC-TGGTTTGGTGGG----GA-TTCATACTGGTGACCCCTGG
gi|9 : actttattaaaactaattcaaaTGCAAGTCACGGACTGTTTTTCCACAT-ACTTAATGGTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTATGCTTTTTTTCTCATTTTTTCAAAACAATACTTCGGTTATTTAACGGTGGTCAGTACACATAATCACCAGTCTGGGAGTCTTAATTAGGTGGTTACCAGACACACTGTACCACTGTGAAGTCGCTG
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA
Alignments
lowQualScore : 222 22 111 11 222 11 4444444444 111 11 4444444444 111111111 444444444444 22222222222222 3333333333 22 11 555555555 1 111 222 1 2222 22222
lowQualScore : 111 1 6 00 111 1 11 99 888 6 3 000 1 1 44 4444444444 1 222 11 5555555555 6 2 3 6 6 1 888888888 999999999999 55 88 6 77777777777777 6 0 1 2 22 6 1111111111 1 00 88 777777777 1 3 7 1 999 333 2 2 4 1111 66666 1
lowQualScore : ... . . .. ... . .. .. ... . . ... . . .. .......... . ... .. .......... . . . . . . ......... ............ .. .. . .............. . . . . .. . .......... . .. .. ......... . . . . ... ... . . . .... ..... .
lowQualScore : 000 0 7 77 888 0 55 22 333 7 2 555 0 0 77 6666666666 0 666 00 2222222222 7 2 8 0 7 0 222222222 777777777777 88 22 7 00000000000000 7 3 0 2 00 7 0000000000 0 77 33 000000000 0 3 3 0 000 333 0 5 0 0000 55555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--NA-CTGTAGAACAAAG-T-CATG-AG--CCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
Reference ( family-2818 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTANCCAGT-TACT--AGACACACCG-G------TCTCTGC-AAGTCACCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--NA-CTGCAGAACAAAG-T-CATGCAG--CCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAACTACGTTCTAAA-TG-ATAATTCTCACNTGTAAC
gi|1 : ATTTAGC---ACAAAACATT-AAGGACTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAG-----A---TTAACCAG--TACTCAAGA-ACATCG-A------TCTCCGC-AAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATGAGA-ATGAGGCACAATG-T-TGTACA---CCAATCATCATGG-AGAC-TG--TTGCTGAGCAGAGA-TTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACCATGCCT-GAAGGAACTATAAAAGGATCGA---ATCATCTCAA-GTTATGTACATTTGATGTCAA---TTG-CTCTCTAAACTATGTTCAAAAGTGCATAA-----ACATGTAAC
gi|11 : taaaaatccatataataggtctgtctaacataccatatcacagtttgcatttataagcacacttttaaaaaatatgagttatcactgatgttacacactctatgatttggtttCAT--CA-TT--AAAACAAAG-TTCATG--G--CCGATTGTTACAAGAGAC-TG--T----AGG----GA-TTCAGTTTCATGACCCCTCGAcatttcttcgtaataaatgatatataaaaagaag
gi|12 : acATTTAGCTGAATAGAA-ATTCAAG-AGTATTT-TTTTAATATCATGC--ATCATTTTT-ATGCTATCGAGGGC
gi|13 : TGTTTGTTTGAATAT----------A-TTCT---GCCATCATGGGCTTACAGACAAC---TTAACATCACCACTCTTTCC-ATGacaac
gi|14 : ataAAAAAACAT---AG-A---TTTGTTTGAATATTAAGCTGAT---TTTT-ATGCCATTGAGGGC-AATAAATAgat
gi|15 : aacG-AATGTTCATTTGAATATTTAGC--ATCA-TTTT-ATGTCACAGAGAGATAACAtaatc
gi|16 : TGTTTGTTTGAATATGTAGC--ATAA-TTTTAATGCCATCTGGGAC
gi|2 : TTCCTGGGA----------TTACCTAGT-TACT--AGACACACCA-GGTCCTTTCTCTGC-AAGTCACTGACTACTTTGCCACAT-AATCAGAGGTGGGAAACTCAT--GA-TTGCAGAACAGAGTT-CATG--G--CCAATCGTCATAC-AGAC-TG--TAGTCAGGCAAAGA-TTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTA---------AATAGGA---ATGAC--GAT-------T-ATATCAATGTTTTGTATA--CGATGTTAC---TTGTCACTTT
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatctCTATAC-ATGTCGGTGACTACTTCTCCATAT-ATTGACAGGTAGGATATTTAC--CAGCT-TATAACAAAG-TACATACATATCCAATCATCATAA-AGAT-TG--TTTTAGATC-GAGG-TACCAAATAACGACCACTGAATcaccatgcagtttttcaatgactgt
gi|4 : tgTCTGGGAGTCTTAA---TTAGGTGGT-TACC--AGACACACTGTA------CCACTGTGAAGTCGCTG
gi|5 : ttgtatgctttttttctcattttttcaaaacaatacttcggttatttaacggtggtcagtacacataatcaccagACATGCTACTGGCTGAGCTAACCAAGCCTAGCAGGGA-TATACA--AAT--ACAGGT-ATTTTAA-AT-ATGAAAA--TGGTGTTAAAGTTTGCATCTCTAAAATACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|6 : TCAGAGGTTGTAGATTCAT--TA-CAGTAGAACAAAGCT-CATG--G---CAATTATCACAC-AGACTTG--GGGGCAGGC-GGGGTTTCGGACTTAAGACC
gi|7 : TTCCT-TGTCTCTGCTAG-----ACAGTTAGCCAGT--ACT--AAACATAC---A------TCTCTGC-AAGTCACCAGCT--TCTTCC-CAC-ATTCAGAAGTGGGAAACTCattaaataactagatagatggtaaaaaaactt
gi|8 : agtttttaatgttggttcaata-ATTCAAAGG---GTGACTCAT--GG-CTGTAGAACAAAGAT-CA---AGA-CCAAT--TC--AA-AGAC-TGGTTTGGTGGG----GA-TTCATACTGGTGACCCCTGG
gi|9 : actttattaaaactaTGTTTCTGGGA----------TTCACCTGCGTACC--AAACATACCA------------TGC-AAGTCACGGACTGTTTTTCCACAT-ACTTAATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA
Alignments
lowQualScore : 222 22 111 11 222 11 4444444444 111 11 3333333333 11111 444444444444 22222222222222 3333333333 22 11 555555555 1 111 222 1 1 1 22222
lowQualScore : 111 1 6 00 111 1 11 99 888 6 3 000 1 1 44 4444444444 1 4 222 11 9999999999 6 0 2 3 6 6 1 44444 000000000000 55 88 6 77777777777777 6 0 1 2 22 6 1111111111 1 00 88 777777777 1 3 7 1 999 333 2 1 1 5 5 66666 1
lowQualScore : ... . . .. ... . .. .. ... . . ... . . .. .......... . . ... .. .......... . . . . . . . ..... ............ .. .. . .............. . . . . .. . .......... . .. .. ......... . . . . ... ... . . . . . ..... .
lowQualScore : 000 0 7 77 888 0 55 22 333 7 2 555 0 0 77 6666666666 4 6 666 00 4444444444 7 7 2 8 0 7 0 00000 222222222222 88 22 7 00000000000000 7 3 0 2 00 7 0000000000 0 77 33 000000000 0 3 3 0 000 333 0 0 0 0 0 55555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
Reference ( family-2818 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--NA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
gi|1 : ATTTAGC---ACAAAACATT-AAGGACTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAG-----A---TTAACCAG--TACTCAAGA-ACATCG-A------TCTCCGC-AAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATGAGA-ATGAGGCACAATG-T-TGTA---CACCAATCATCATGG-AGAC-TG--TTGCTGAGCAGAGA-TTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACCATGCCT-GAAGGAACTATAAAAGGATCGA---ATCATCTCAA-GTTATGTACATTTGATGTCAA---TTG-CTCTCTAAACTATGTTCAAAAGTGCATAA-----ACATGTAAC
gi|11 : taaaaatccatataataggtctgtctaacataccatatcacagtttgcatttataagcacacttttaaaaaatatgagttatcactgatgttacacactctatgatttggtttTAAAACAAAG-TTCATG----GCCGATTGTTACAAGAGAC-TG--T----AGG----GA-TTCAGTTTCATGACCCCTCGAcatttcttcgtaataaatgatatataaaaagaag
gi|12 : accatcatATTTAGCTGAATAGAA-ATTCAAG-AGTATTT-TTTTAATATCATGC--ATCATTTTT-ATGCTATCGAGGGC
gi|13 : TGTTTGTTTGAATAT----------A-TTCT---GCCATCATGGGCTTACAGACAAC---TTAACATCACCACTCTTTCC-ATGacaac
gi|14 : ataAAAAAACAT---AG-A---TTTGTTTGAATATTAAGCTGAT---TTTT-ATGCCATTGAGGGC-AATAAATAgat
gi|15 : aacG-AATGTTCATTTGAATATTTAGC--ATCA-TTTT-ATGTCACAGAGAGATAACAtaatc
gi|16 : TGTTTGTTTGAATATGTAGC--ATAA-TTTTAATGCCATCTGGGAC
gi|2 : TTCCTGGGA----------TTACCTAGT-TACT--AGACACACCA-GGTCCTTTCTCTGC-AAGTCACTGACTACTTTGCCACAT-AATCAGAGGTGGGAAACTCAT--GA-TTGCAGAACAGAGTT-CATG----GCCAATCGTCATAC-AGAC-TG--TAGTCAGGCAAAGA-TTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTA---------AATAGGA---ATGAC--GAT-------T-ATATCAATGTTTTGTATA--CGATGTTAC---TTGTCACTTT
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatctCTATAC-ATGTCGGTGACTACTTCTCCATAT-ATTGACAGGTAGGATATTTAC--CAGCT-TATAACAAAG-TACATACATATCCAATCATCATAA-AGAT-TG--TTTTAGATC-GAGG-TACCAAATAACGACCACTGAATcaccatgcagtttttcaatgactgt
gi|4 : tgTCTGGGAGTCTTAA---TTAGGTGGT-TACC--AGACACACTGTA------CCACTGTGAAGTCGCTG
gi|5 : ttgtatgctttttttctcattttttcaaaacaatacttcggttatttaacggtggtcagtacacataatcaccagACATGCTACTGGCTGAGCTAACCAAGCCTAGCAGGGA-TATACA--AAT--ACAGGT-ATTTTAA-AT-ATGAAAA--TGGTGTTAAAGTTTGCATCTCTAAAATACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|6 : TCAGAGGTTGTAGATTCAT--TA-CAGTAGAACAAAGCT-CATG---G--CAATTATCACAC-AGACTTG--GGGGCAGGC-GGGGTTTCGGACTTAAGACC
gi|7 : TTCCT-TGTCTCTGCTAG-----ACAGTTAGCCAGT--ACT--AAACATAC---A------TCTCTGC-AAGTCACCAGCT--TCTTCC-CAC-ATTCAGAAGTGGGAAACTCattaaataactagatagatggtaaaaaaactt
gi|8 : agtttttaatgttggttcaata-ATTCAAAGG---GTGACTCAT--GG-CTGTAGAACAAAGAT-CAAG---A-CCAAT--TC--AA-AGAC-TGGTTTGGTGGG----GA-TTCATACTGGTGACCCCTGG
gi|9 : actttattaaaactaTGTTTCTGGGA----------TTCACCTGCGTACC--AAACATACCA------------TGC-AAGTCACGGACTGTTTTTCCACAT-ACTTAATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA
Alignments
lowQualScore : 222 22 111 11 222 11 4444444444 111 11 3333333333 11111 444444444444 22222222222222 33333333333 22 11 555555555 111 111 222 1 1 1 22222
lowQualScore : 111 1 6 00 111 1 11 99 888 6 3 000 1 1 44 4444444444 1 4 222 11 9999999999 6 0 2 3 6 6 1 33333 000000000000 55 88 6 77777777777777 6 0 1 2 22 6 11111111111 1 00 88 777777777 1 666 1 999 333 2 1 1 5 5 66666 1
lowQualScore : ... . . .. ... . .. .. ... . . ... . . .. .......... . . ... .. .......... . . . . . . . ..... ............ .. .. . .............. . . . . .. . ........... . .. .. ......... . ... . ... ... . . . . . ..... .
lowQualScore : 000 0 7 77 888 0 55 22 333 7 2 555 0 0 77 6666666666 4 6 666 00 4444444444 7 7 2 8 0 7 0 00000 222222222222 88 22 7 00000000000000 7 3 0 2 00 7 00000000000 0 77 33 000000000 0 000 0 000 333 0 0 0 0 0 55555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACC-A-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
Reference ( family-2818 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACC-A-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
gi|1 : ATTTAGC---ACAAAACATT-AAGGACTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAG-----A---TTAACCAG--TACTCAAGA-ACATCG-A------TCTCCGC-AAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATGAGA-ATGAGGCACAATG-T-TGTA---CACCAATCATCATGG-AGAC-TG--TTGCTGAGCAGAGA-TTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACC-ATGCCT-GAAGGAACTATAAAAGGATCGA---ATCATCTCAA-GTTATGTACATTTGATGTCAA---TTG-CTCTCTAAACTATGTTCAAAAGTGCATAA-----ACATGTAAC
gi|11 : taaaaatccatataataggtctgtctaacataccatatcacagtttgcatttataagcacacttttaaaaaatatgagttatcactgatgttacacactctatgatttggtttTAAAACAAAG-TTCATG----GCCGATTGTTACAAGAGAC-TG--T----AGG----GA-TTCAGTTTCATGACCCCTCGAcatttcttcgtaataaatgatatataaaaagaag
gi|12 : accatcatATTTAGCTGAATAGAA-ATTCAAG-AGTATTT-TTTTAATATCATGC--ATCATTTTT-ATGCTATCGAGGGC
gi|13 : TGTTTGTTTGAATAT----------A-TTCT---GCCATCATGGGCTTACAGACAAC---TTAACATCACCACTCTTTCC-ATGacaac
gi|14 : ataAAAAAACAT---AG-A---TTTGTTTGAATATTAAGCTGAT---TTTT-ATGCCATTGAGGGC-AATAAATAgat
gi|15 : aacG-AATGTTCATTTGAATATTTAGC--ATCA-TTTT-ATGTCACAGAGAGATAACAtaatc
gi|16 : TGTTTGTTTGAATATGTAGC--ATAA-TTTTAATGCCATCTGGGAC
gi|2 : TTCCTGGGA----------TTACCTAGT-TACT--AGACACACCA-GGTCCTTTCTCTGC-AAGTCACTGACTACTTTGCCACAT-AATCAGAGGTGGGAAACTCAT--GA-TTGCAGAACAGAGTT-CATG----GCCAATCGTCATAC-AGAC-TG--TAGTCAGGCAAAGA-TTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTA----------AATAGGA---ATGAC--GAT-------T-ATATCAATGTTTTGTATA--CGATGTTAC---TTGTCACTTT
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatctCTATAC-ATGTCGGTGACTACTTCTCCATAT-ATTGACAGGTAGGATATTTAC--CAGCT-TATAACAAAG-TACATACATATCCAATCATCATAA-AGAT-TG--TTTTAGATC-GAGG-TACCAAATAACGACCACTGAATcaccatgcagtttttcaatgactgt
gi|4 : tgTCTGGGAGTCTTAA---TTAGGTGGT-TACC--AGACACACTGTA------CCACTGTGAAGTCGCTG
gi|5 : ttgtatgctttttttctcattttttcaaaacaatacttcggttatttaacggtggtcagtacacataatcaccagACATGCTACTGGCTGAGCTAACCAA-GCCTAGCAGGGA-TATACA--AAT--ACAGGT-ATTTTAA-A-TATGAAAA--TGGTGTTAAAGTTTGCATCTCTAAAATACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|6 : TCAGAGGTTGTAGATTCAT--TA-CAGTAGAACAAAGCT-CATG---G--CAATTATCACAC-AGACTTG--GGGGCAGGC-GGGGTTTCGGACTTAAGACC
gi|7 : TTCCT-TGTCTCTGCTAG-----ACAGTTAGCCAGT--ACT--AAACATAC---A------TCTCTGC-AAGTCACCAGCT--TCTTCC-CAC-ATTCAGAAGTGGGAAACTCattaaataactagatagatggtaaaaaaactt
gi|8 : agtttttaatgttggttcaata-ATTCAAAGG---GTGACTCAT--GG-CTGTAGAACAAAGAT-CAAG---A-CCAAT--TC--AA-AGAC-TGGTTTGGTGGG----GA-TTCATACTGGTGACCCCTGG
gi|9 : actttattaaaactaTGTTTCTGGGA----------TTCACCTGCGTACC--AAACATACCA------------TGC-AAGTCACGGACTGTTTTTCCACAT-ACTTAATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA
Alignments
lowQualScore : 222 22 111 11 222 11 4444444444 111 11 3333333333 11111 444444444444 22222222222222 33333333333 22 11 555555555 111 111 222 1 1 1 22222
lowQualScore : 111 1 6 00 111 1 11 99 888 6 3 000 1 1 44 4444444444 1 4 222 11 9999999999 6 0 2 3 6 6 1 33333 000000000000 55 88 6 77777777777777 6 0 1 2 22 6 11111111111 1 00 88 777777777 1 666 1 999 333 2 1 1 5 5 66666 1
lowQualScore : ... . . .. ... . .. .. ... . . ... . . .. .......... . . ... .. .......... . . . . . . . ..... ............ .. .. . .............. . . . . .. . ........... . .. .. ......... . ... . ... ... . . . . . ..... .
lowQualScore : 000 0 7 77 888 0 55 22 333 7 2 555 0 0 77 6666666666 4 6 666 00 4444444444 7 7 2 8 0 7 0 00000 222222222222 88 22 7 00000000000000 7 3 0 2 00 7 00000000000 0 77 33 000000000 0 000 0 000 333 0 0 0 0 0 55555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACC-A-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
Reference ( family-2818 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACC-A-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
gi|1 : ATTTAGC---ACAAAACATT-AAGGACTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAG-----A---TTAACCAG--TACTCAAGA-ACATCG-A------TCTCCGC-AAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATGAGA-ATGAGGCACAATG-T-TGTA---CACCAATCATCATGG-AGAC-TG--TTGCTGAGCAGAGA-TTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACC-ATGCCT-GAAGGAACTATAAAAGGATCGA---ATCATCTCAA-GTTATGTACATTTGATGTCAA---TTG-CTCTCTAAACTATGTTCAAAAGTGCATAA-----ACATGTAAC
gi|11 : taaaaatccatataataggtctgtctaacataccatatcacagtttgcatttataagcacacttttaaaaaatatgagttatcactgatgttacacactctatgatttggtttTAAAACAAAG-TTCATG----GCCGATTGTTACAAGAGAC-TG--T----AGG----GA-TTCAGTTTCATGACCCCTCGAcatttcttcgtaataaatgatatataaaaagaag
gi|12 : accatcatATTTAGCTGAATAGAA-ATTCAAG-AGTATTT-TTTTAATATCATGC--ATCATTTTT-ATGCTATCGAGGGC
gi|13 : TGTTTGTTTGAATAT----------A-TTCT---GCCATCATGGGCTTACAGACAAC---TTAACATCACCACTCTTTCC-ATGacaac
gi|14 : ataAAAAAACAT---AG-A---TTTGTTTGAATATTAAGCTGAT---TTTT-ATGCCATTGAGGGC-AATAAATAgat
gi|15 : aacG-AATGTTCATTTGAATATTTAGC--ATCA-TTTT-ATGTCACAGAGAGATAACAtaatc
gi|16 : TGTTTGTTTGAATATGTAGC--ATAA-TTTTAATGCCATCTGGGAC
gi|2 : TTCCTGGGA----------TTACCTAGT-TACT--AGACACACCA-GGTCCTTTCTCTGC-AAGTCACTGACTACTTTGCCACAT-AATCAGAGGTGGGAAACTCAT--GA-TTGCAGAACAGAGTT-CATG----GCCAATCGTCATAC-AGAC-TG--TAGTCAGGCAAAGA-TTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTA----------AATAGGA---ATGAC--GAT-------T-ATATCAATGTTTTGTATA--CGATGTTAC---TTGTCACTTT
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatctCTATAC-ATGTCGGTGACTACTTCTCCATAT-ATTGACAGGTAGGATATTTAC--CAGCT-TATAACAAAG-TACATACATATCCAATCATCATAA-AGAT-TG--TTTTAGATC-GAGG-TACCAAATAACGACCACTGAATcaccatgcagtttttcaatgactgt
gi|4 : tgTCTGGGAGTCTTAA---TTAGGTGGT-TACC--AGACACACTGTA------CCACTGTGAAGTCGCTG
gi|5 : ttgtatgctttttttctcattttttcaaaacaatacttcggttatttaacggtggtcagtacacataatcaccagACATGCTACTGGCTGAGCTAACCAA-GCCTAGCAGGGA-TATACA--AAT--ACAGGT-ATTTTAA-A-TATGAAAA--TGGTGTTAAAGTTTGCATCTCTAAAATACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|6 : TCAGAGGTTGTAGATTCAT--TA-CAGTAGAACAAAGCT-CATG---G--CAATTATCACAC-AGACTTG--GGGGCAGGC-GGGGTTTCGGACTTAAGACC
gi|7 : TTCCT-TGTCTCTGCTAG-----ACAGTTAGCCAGT--ACT--AAACATAC---A------TCTCTGC-AAGTCACCAGCT--TCTTCC-CAC-ATTCAGAAGTGGGAAACTCattaaataactagatagatggtaaaaaaactt
gi|8 : agtttttaatgttggttcaata-ATTCAAAGG---GTGACTCAT--GG-CTGTAGAACAAAGAT-CAAG---A-CCAAT--TC--AA-AGAC-TGGTTTGGTGGG----GA-TTCATACTGGTGACCCCTGG
gi|9 : actttattaaaactaTGTTTCTGGGA----------TTCACCTGCGTACC--AAACATACCA------------TGC-AAGTCACGGACTGTTTTTCCACAT-ACTTAATGGTG
blockSeqs : TGA T C TC AG G CA TG CAT A T . A C A GTCTTAA C A CGT . CAGGTCCTT G T A A . A CAG TACATACATAT TG AG T TAGTCAGGCAAA T C T GA C ACCAAGCCTA T A . ACAGGT A TGT T C AGT T A T . . TTCTC C
blockSeqs : A . . AA G TA . CA . T T GACAG G G TT . TGTA . T A A . T GA TTCATGG CG C . TTTTAGATCGA . C C . A C . . T T A A T . C
blockSeqs : A A TT . AA . . . G A TT . CA . T G A . T TA TTCATGG CA A . GGGGCAGGCGG . A C
blockSeqs : G GT . A . . A T T . A . C . . . T GG CTCATGG TA C . GTTTGGTGGG . T A
blockSeqs : . . . . . . G . C ATCAAGA . A . TAGG . G T
blockSeqCons : GC******** CT* ** CA******** GA*** TGGTTAGGCGGG**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-----A---TTAGCCGGT-TACT--AGACACACCG-A------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TG--TTGNCGGGC-GAGA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACC-A-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAGC--------TTAGCCGGCT-ACT--AGACACACCA--------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCATGA---CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TGTGGTTAGGCGGG--GA-TTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACC-A-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA
Alignments
lowQualScore : 222 22 111 11 222 11 55555555 22 11 333333333333 11111 444444444444 3333333333 22 11 555555555 1 111 222 1 1 1 22222
lowQualScore : 111 1 6 00 111 1 11 99 888 6 3 000 1 1 44 77777777 1 4 44 11 999999999999 6 0 2 3 6 6 1 33333 000000000000 55 88 6 99999999 0 1 1 2 22 6 1111111111 1 00 88 777777777 1 3 7 1 999 333 2 1 1 5 5 66666 1
lowQualScore : ... . . .. ... . .. .. ... . . ... . . .. ........ . . .. .. ............ . . . . . . . ..... ............ .. .. . ........ . . . . .. . .......... . .. .. ......... . . . . ... ... . . . . . ..... .
lowQualScore : 000 0 7 77 888 0 55 22 333 7 2 555 0 0 77 22222222 4 6 44 00 222222222222 7 7 2 8 0 7 0 00000 222222222222 88 22 7 88888888 3 0 0 2 00 7 0000000000 0 77 33 000000000 0 3 3 0 000 333 0 0 0 0 0 55555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-------TTAGCCGGT-TACT--AGACACAC--C-A-------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TGTGGTCGGG-CGGGGATTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
Reference ( family-2818 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGCTGAANAAAACATT-AAG-ANTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAACCAGTTAACNTNACCACTCTTTCCTATGTTTCTGGGAG-C-----TTAGCCGGC-TACT--AGACACAC--C-A-------TCTCTGC-AAGTCGCCGACTACTTTTCCACAT-ANTCAGAGGTGGGAGACTCAT--GA-CTGTAGAACAAAG-T-CATG---AGCCAATCGTCATAA-AGAC-TGTGGTTAGG-CGGGGATTCAAACTNACGACCCCTGGATTGATAGTNNGACGCGCTACCGACTGAGCTAACCA-GCCTAGNAGGAA-TATAAA--GAT--A---GT-ATNTCAA-GTTATGTANA--CGATGTTAA---TTGCCTCTCTAAANTACGTTCNAAAGTGCATAATTCTCACNTGTAAC
gi|1 : ATTTAGC---ACAAAACATT-AAGGACTGTTTGTTTGAATATCTAGC--ATCA-TTTT-ATGCCATCGAGGGCTAACAGACAATCAGTTAATCTAACCACTCTTTCCTATGATTCTGGGAG-A-----TTAACCAG--TACTCAAGA-ACAT--CGA-------TCTCCGC-AAGTAACCGACAACTTTCCCTCTTAAATCAGCGTTGAGAGACAAATGAGA-ATGAGGCACAATG-T-TGTA---CACCAATCATCATGG-AGAC-TGTTGCTGAG-CAGAGATTCAAACTAATGACCCCTGGATTGATAGTCTGACGCGCCGCCGACTGAGCTAACCATGCCT-GAAGGAACTATAAAAGGATCGA---ATCATCTCAA-GTTATGTACATTTGATGTCAA---TTG-CTCTCTAAACTATGTTCAAAAGTGCATAA-----ACATGTAAC
gi|11 : taaaaatccatataataggtctgtctaacataccatatcacagtttgcatttataagcacacttttaaaaaatatgagttatcactgatgttacacactctatgatttggtttTAAAACAAAG-TTCATG----GCCGATTGTTACAAGAGAC-TGTAG---------GGATTCAGTTTCATGACCCCTCGAcatttcttcgtaataaatgatatataaaaagaag
gi|12 : accatcatATTTAGCTGAATAGAA-ATTCAAG-AGTATTT-TTTTAATATCATGC--ATCATTTTT-ATGCTATCGAGGGC
gi|13 : TGTTTGTTTGAATAT----------A-TTCT---GCCATCATGGGCTTACAGACAAC---TTAACATCACCACTCTTTCC-ATGacaac
gi|14 : ataAAAAAACAT---AG-A---TTTGTTTGAATATTAAGCTGAT---TTTT-ATGCCATTGAGGGC-AATAAATAgat
gi|15 : aacG-AATGTTCATTTGAATATTTAGC--ATCA-TTTT-ATGTCACAGAGAGATAACAtaatc
gi|16 : TGTTTGTTTGAATATGTAGC--ATAA-TTTTAATGCCATCTGGGAC
gi|2 : TTCCTGGGA--------TTACCTAGT-TACT--AGACACAC--C-AGGTCCTTTCTCTGC-AAGTCACTGACTACTTTGCCACAT-AATCAGAGGTGGGAAACTCAT--GA-TTGCAGAACAGAGTT-CATG----GCCAATCGTCATAC-AGAC-TGTAGTCAGG-CAAAGATTCAAACTCACGACCCCTGGATTGATAGTGAGATGCA-TAACGACTTAGTTA---------AATAGGA---ATGAC--GAT-------T-ATATCAATGTTTTGTATA--CGATGTTAC---TTGTCACTTT
gi|3 : attttagttattcaacagctgtcagtgcgccttgtcatctCTATAC-ATGTCGGTGACTACTTCTCCATAT-ATTGACAGGTAGGATATTTAC--CAGCT-TATAACAAAG-TACATACATATCCAATCATCATAA-AGAT-TGT-TTTAGATCGAGGTACCAAA-TAACGACCACTGAATcaccatgcagtttttcaatgactgt
gi|4 : tgTCTGGGAG-TCTTAATTAGGTGGT-TACC--AGACACACTGT-A-------CCACTGTGAAGTCGCTG
gi|5 : ttgtatgctttttttctcattttttcaaaacaatacttcggttatttaacggtggtcagtacacataatcaccagACATGCTACTGGCTGAGCTAACCAAGCCTAGCAGGGA-TATACA--AAT--ACAGGT-ATTTTAA-AT-ATGAAAA--TGGTGTTAAAGTTTGCATCTCTAAAATACGTTCTAAA-TG-ATAATTCTCACCTGTAAC
gi|6 : TCAGAGGTTGTAGATTCAT--TA-CAGTAGAACAAAGCT-CATG---G--CAATTATCACAC-AGACTTGGGGGCAGG-CGGGGTTTCGGACTTAAGACC
gi|7 : TTCCT-TGTCTCTGCTAGACAG---TTAGCCAG--TACT--AAACATAC----A-------TCTCTGC-AAGTCACCAGCT--TCTTCC-CAC-ATTCAGAAGTGGGAAACTCattaaataactagatagatggtaaaaaaactt
gi|8 : agtttttaatgttggttcaata-ATTCAAAGG---GTGACTCAT--GG-CTGTAGAACAAAGAT-CAAG---A-CCAAT--TC--AA-AGAC---TGGTTTGG-TGGGGATTCATACTGGTGACCCCTGG
gi|9 : actttattaaaactaTGTTTCTGGGA--------TTCACCTGCGTACC--AAACATAC--C-A-------T----GC-AAGTCACGGACTGTTTTTCCACAT-ACTTAATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTGACGCCTTTTATATCTATTTTTTTAAAACGAAATTTCAGTTATTTGATGGCAGTTAGCACACTTAATCATCA