lowQualScore : 111111 111 22222222 11 1 222 1111111 33333333333 111111111111 11111111 111111111111 333333333333333 222 111 3333333333 22222 11 1 1 22222222 55555555555555555555555555555555 2222 1 1 11 1
lowQualScore : 777 444444 000 2 666 66666666 1 66 5 333 2 2 5555555 1 33 77777777777 2 33 2 666666666666 00000000 333333333333 1 333333333333333 5 5 2 3 33 2 777 3 444 2222222222 3 3 7 33333 11 55 4 777 0 1 0 6 3 7 3 44 22222222 55 22222222222222222222222222222222 0000 8 1 5 6 22 3 1 4
lowQualScore : ... ...... ... . ... ........ . .. . ... . . ....... . .. ........... . .. . ............ ........ ............ . ............... . . . . .. . ... . ... .......... . . . ..... .. .. . ... . . . . . . . .. ........ .. ................................ .... . . . . .. . . .
lowQualScore : 999 888888 444 9 444 99999999 2 99 6 222 5 5 4444444 9 44 99999999999 7 77 7 999999999999 77777777 111111111111 6 111111111111111 9 3 7 3 99 7 888 1 999 4444444444 1 1 9 22222 55 55 8 888 8 2 3 3 7 5 8 66 66666666 00 55555555555555555555555555555555 8888 1 8 1 4 11 7 3 0
consensus : CTTTTTCG--C-T--A-TATAN--TTCAACTGAAATT-CTNTAATTTT-G--GAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAA-TC-CATGCAGGAGACCNA-TNTAGCAGTCT--TTCTGTTTC--N-C---TGTAATGCCA-TCAT--C-A----------TCAT-------CTCG--TTTT------TTCGCTA--------------TATGCA-T-TCGTCCNTTCACTCT-ATCCAAACNNT-CATGAAAANG-CTGGTGGCC--G-AGGTN-C-GT-TCAAGTNGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAATATTGGA--GGAA--T--T--ACAGCCAA------TATAAACATA-A--------------CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACT-ATTTCNGCACACNACGACCTCT
Reference ( gi|4 ) : CTTTTTCG--C-T--A-TATAT--TTCAACTGAAATT-CTATAATTTT-G--GTGTTCTGTCACAAGTTTAAAAACGTTTTCACACATAAAGCACAAGTTAA-TC-CATGCAGGAGACCTA-TATAGCAGTCT--TTCTGTGTC--T-C---TGTAATGCCA-TCAT--C-A----------TTAT-------TTCG--TTTT------TTCACTT--------------TATGCA-T-TCGTCCCTTCACTCT-ATCCAAAAAGT-CATGAAAATG-CTGGTGGCC--T-AGTTT-C-AT-TCAAGTTGTCTCTACCGCCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGATGAATAGTATTGGA--GGGA--A--T--ACAGCCAA------TGTAAACATA-AC-------------CACAAACGATATGCAAAGTTTTTATTTTAAATGGGACT-CTTTCTGCACACAACGACCTCT
gi|9 : CTTTTTCG--CCT--A-TATAT--TTCAACTGAAATT-CTATAATTTT-G--GGATTCTGTCATAAGTTTAAAAACGTTGCCACACATATAGCACAAGTTAA-TC-CATGCAGGAGACCTT-TTAAGCAGTCT--TTCTGTTTC--T-C---TGTATTGCCA-TCAT--A-A----------TAAT-------CTCG--TTTT------TTCGTTA--------------TATGCA-T-TCGTCCCTTCACTCT-ATCCAAACTGT-CATGAAAATG-CTGGTGGCT--G-AGTTT-C-AT-TCAAGTTGTCTCTATAATCCTACAATCTGACAAAAGAG-CTCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGGTGCATAATATTGAA--
gi|8 : cagtcaCTTTTTCG--CCT--A-TATAC--TTCAACTGAAATT-CTATAATTCT-G--GTGTTCTGTCACAAGTTTAAAAACGTTTCCACACATAAAGCACAAGTTAA-TT-CATGCAGGAGACCTA-TTTAGCAGTCT--TTCTGTGTC--T-C---TGTAATGCCA-TCAT--C-A----------TAAT-------CTCG--TTTT------TTCACT-------------------------------------CT-ATCCAAAAAGT-CATGAAAATA-CTGGTGGCC--G-AGTTT-C-AT-TCAAGTTGTCTCTATCGTCataaacaatatatagttaaataaactt
gi|14 : gaccagtcaCTTTTTCT--C-A--AGTATAA--TTCAACCGAAAGT-CGCAAATTTC-G--AAGGGATGTCACAAGTTTAAAAGCGTTGTCGCATATA-----C--TTTAT-TC-CTTGTAGGAGACCAA-TATTG---TCC--TTTTTTG-----------GAAATGTAA-TCG---C-A----------CCAC-------CTTGA-TTTT------TTTGCTA--------------TACCCA-T-TTGTTTATTCTCTCT-ATCCAAAaaatacagtaaataaagacttaaactttcacatgggttgagtaatattggaggaattacagccaatgtaaacataaacataaatgaaatgcaaagtttatattttgaatgggattctttctgcacataacgacgtcttgaacaagaggtcaccggtcttcct
gi|5 : tcagatcgatccTTTTTCA--C-TT-A-TATAT--TTCAACTG---------------T-G--AC--TCTGTCACAAGTTTAAAAGCGTTGCCAAACATGTAACACACTTCAA-TC-CATACAGGAAACCAA-TGT-----------TC-----C--A-C---TGTAATGCCA-TCAT--C-A----------CCAT-------CTCG--TTTTC-----TTCACTA--------------TATGCA-T-TCGTCTCTTCACTCT-ATCCAAACTGT-CATGAAAA-G-CTGGCGGCC----GGTTTAC-AT-TCAAGTTTTCTCTGTCATCCTACACTCTAACAAAATAGTCCCTG-AAAA--ATACAAAT---ATATGCTGTAGCTTTG-AAAT-----TTTAAACTTTCACATGGGGTGATTA-TATTTGA--GGAA--T--T--ACAGCCAA--------TAAACACATGCA------------CACATATGAAATGCCAAGTTTATATTTT-TATCAGACT-ATTTTGGCAT-CTACGACctttgatcaaacatcaaatctgat
gi|7 : actagtaaaTTTTCCG--C-T--AATATAT--TGCAAATGAAATT-CTATAATTTT-G--G------------AGTTTAAAAACGTTGCCACACAAATAGAACACTTTAA-TC-CATACAGAAGTCTAA-TTCGGCAGTAT--TTCTGTCCC--A-C---TGTAATGCCG-TCAT--C-A----------CTAT-------TTCG--TATT------TTTACTG--------------TATGCA-T-TCGTCCAATCACTCT-TTCCAAA---TGCATGAAAAgtgttgaacaagaggtcaccggtcttcc
gi|3 : agacctgtcagTTTTTCCTCC-T--A-GAAAA--TTAAACTAAAATT-GGTTGATTTT-T--CAGTCTTTTCG-AGGTTTAATGACGCGGCCATACAT-----------TAA-AC-CATGGAGGAAAC--A-AAT-----TCTGTTTCTGTTTA--A-A---TGAAATGCCC-TCAT--CGA----------TCAT-------CTCT--ATTT------TTCGTTA--------------TATCAA-T-TTGTCCATTCTCTCT-ATCCAAACACT-GATCAATAAA-CTGGTGACC--A-AGGCG-C-ATAGCCAGC-GCCTCTGTAATCTTAAACTCTGAACAAATAATCCCTG-AAAATTATACAAAA---CTAGTCTGTAACTTTGGAAGTCAAACCTCAGACGTGCACATGGGGTGAACAATATTAGA--T--A--A--TTTACAGCCAA------TCTTCACATT-AT-------------CACAAATGAACTGC-AAGCTTTGATTGTTAATATAACT-ACTTTAGCAC-CTACGGCCTaaatgcacttccataaaatagtccttaaaatactaaaatatcctgtctctaaggaaataaagcctaaaggtttcagatagggtgaataatattggaggaattacagccaatatacacaaatgcaatgcaaagcttatatttttaatcggactattatagcatacaacgacctcttgaacaagaggtcatcggtcttcctcc
gi|15 : gtaTTTTTCG--CCT--A-GTTCA--TTCAACTCTAATT-CTGTGATTTT-TTTATATTCTGTCACACGTTTAAAAACGTTGCCACACGTATAGCACAA-TTAA-ACACATACAGGAGACCCA-TTTAGCAATCT--TTTTG-ATC--CAT---TATAATG--A-TAATGCC-A----------TCAT-------TTCG----------------CTA--------------TATACA---TCGTCCCATCACTCT-ATCCtgtcaaagggacactggttttcatcc
gi|6 : accggtcaaTTCTC---C-T--T-TATAA--TTCATCTGAAATTTCTTTATTGTT-G--A-GTTCTGTCACAAGTTTGAAATCGTTACCACACA-----CAT---TTAA-TC-TAT----------TA-AATAGTA---T--TCCAGTTCC--G-C---TGTAAC-CCAGTCAT--C-A----------CCAT-------CTCA--TGTTGTTGAGTTTGCTG--------------CATGTA-T-TTGTTCCTTCACTAT-ATCCAAACATT-CATGAACAAA-CTGGTGACA--G-AGGTC-C-GT---A---TATTTCT----TCCTACACTCTGACAAAA-AGTCCCT------------AAAA---ATATTCTG-AACGTAGAACATAAAGCTTTAAACTTACAAATTGTATGAATAATATT-GA--GAAA--T--T--ACAGCTGA-------ATAAA------------------------------ATGCCAAATTTATATTTTTAATAGAACT-tg
gi|11 : aggtcggtcaattaTTTTG--C-TTCA-TGTATAACTCATCTGAAAT--CTA----------------CTGTT-----TTTAAA---GTTGCCTTACATATATTACATTTAAA-TC-TATTCATGGGACAAA-TGTTGCAGTAT--GTCTGT-TC--AAC---TGTAACGGTA-TTAT--C-A----------TCAT-------CTCG--ACAT------TTTGCTA--------------TATCCA-T-TGGACCATT-ATTTTCATCCAAACTCT-GATGGAAA-G-CTGGTGGCA--G-AG--G-CAAT-TCAAGTAGTC---ATTG---TA-ACTTTGACAAAATAGTCCCT--AAAC--ATATAAAAAACATATCCTACAATTTAAGAGACAAAGCTTCGAAC-ATCACATGGGGAGAAAAATA----A--GTGATTT--T--ACAGCCAAGC----TTCAAA-AGA-A--------------CACAAAgcccgtactttacccttcgacattttgaacaatgggcaaccagtcttcttcc
gi|13 : aTTTCG--CCT--A-TATGA--TATAACTGGACCT-CTCTAATTTT-C--GAAGTCTGTCACAAGTTTAATAACATTGCTATAAATACAGCAT-ACTTAAGTC-CATGCAGGAGACCTAGTA-ATCAGT-T--TTCCAGGTCAAT-----TGTCTTACCA-TC------------------TGT-------TTA----TTT------TTCACTG--------------TATGCA-TATCAAACCTT-----------------T-CATGAAAACG-TTGGAGACA--G-GGGAT-T-GT-TCAAGTCGTCGCTGTCAGCCTACGTTCTtaaactacgttaccttttga
gi|12 : cagatcggtcaataTCGT-C-T--C-TGTAT--TTCAACTGA------TAT------------------TCACAAGTTTGAAAATGCTGCAACACATACAGCACATTTTGG--C-CATGCAGGAGACTCA-TTAAATAGTCG--TTCTGT-----T-T---TA-AATGCTA-GCAT--T-A----------ACAT-------CTTG--TCGT------TTCGCTA--------------TATATA-T-TCGTCTCTTAACTCT-ATCCAAACTGT-CATGAACAAA-CTGGTGGCG--T-AGGTA-C-GT-TTGAGTCGACTCTGTTATCTTGGGCTCAGACAAAACAATCCC----------TAC-AAA---ATATCCTGTAACTAAGCAAACAAA
gi|1 : --C-T--A-TATAA--TTCAACTGAAATG-CTCTGACTTT-G--AAATTCTG---CAA-----------------CATATATAGCACACTTTAA-TC-CATACAGGACACCCA-TTCAGCCGTCT--TTCTGTTCC--A-C---TGTAATGCCA-CCAT--C-ACCATCTCGATTTATATATTCATTCG--TCCC------TTCACTCAAGGATATATAGTCTATATAAT-TCCTTGCTTCATTTT-ATTCAAACTGT-CATGAAAGT--TTGGTGGCCGATGAG----C-AT-TCAAGTGGTGTCTGTCATTAT-CACTCTGACAAAACAATCCCTG-AAAA--ATAC
gi|18 : --C-T--G-TATAA--TCCAACTGAAATT--TCTAATTTT-G--GAGTTTTGTCACATGTTTAAAA-CGTTGCCACAAATAGAGGACACTTTGA-TA-TATGCAGGGGACCCA-TTTAGCAGTAT--TTTTGTTCC--A-C---TGTttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|2 : CTGAATTT-CTCTGATTTTTG--GAGTTATGTCACCAGTTTAAAAACGTTGCCAAGCGTATAGCAAACTTTAA-TC-CATGCAGGAGACA-A-TTTAGCAGTTT--TTCTGTTCC--A-C---TGTAATGCTT-TCAT--C-A----------ACAT-------CTCGT-TTTT------TTCGCTA--------------TATACA-T-TCGTCAATTTTCTCT-ATCCAAATGTT-CATGAAAAAG-GTAATGGCC--G-AGGTA-A-GT-TCAAGTCATTTCTATCATACTACACTCTGACAAAATGGTCTCTGAAAAA--ATAC-AAA---ACATCCTGTAACTTGGGAAATAAAGCCTTAAACCTTTATATTGGGTCAATGATACTGAA--GAAA--T--T--ATACCCAA------TCTTCCCATA-AA-------------CACAAA-GAAATGCTAAGTTTATGTTTTAA
gi|16 : tcacatgtttcgaataggacaagatgagataatcgtatacagtatcagattttgattgttttctcttAGTTTCAAAACATTACAACACATTTAACACAGACCAA-TC---TGAAGAAGACCCA-GTTTGCAGTCT--TTCTGT-----TACAAATGCAATAGTA-TCAC--C-T----------ACAT-------CTCA--AGTG------TTCGTTA--------------TAT-CATT-TCGCCCATGCTCTCT-ACCCAAAATTT-TAT--CAACGACTGGTGGCC--tagaattaaatccttacgaccttttgaacaaggggtcaccggtcttatt
gi|10 : ttctcctgtaaaagttcactggtttctGTTTTCACACAAGTAGTACACTTAAA-CC-TATACAGGGTACCAACTGT-GCAATCT--TTCTGT-TC--TAC---TGTAAAGACA-TTAT--T-A----------TTAT-------CTCGATTTTT------TTTGCAA--------------TATCCA-T-TCGCCCATTCTCTTT-ATCCAGACGTT-GATGAAAACA--TGGAGGTC--G-AGGCA-C-GT-CCCAGTAGTCTCTGTCATCCTACACTCTGACAAAATAGTTCgaagc
gi|19 : atctttcaaatcgtctttctttggaTGAAACAG-CTGGTGACC----GGACA-C-TT-TTAGATATTTTCTGTCAGCTTGCACGTTGACCAAATAGTCCCTG-AAAA--TCATATAA---TTCTCTT----TTTAATTATCAAA---TGAAACTTTAACATacatgggcagaacaatatgtaagaatttacagccaagcttctcataaacatagattaactgcattgttttaattttccatagaactacttaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|21 : -CTTGTGACC--G-AAGTA-C-AT-TCAAGTGTTCTCTGTCATCCTGCACTCTGGCAAAATAGT
gi|7 : tccactgtacataaaTGCACTTCCATAAAATAGTCCTT---AAA--ATACTAAA---ATATCCTGTCTCTAAGGAAATAAAGCCTAAAGGTTTCAGATAGGGTGAATAATATTGGA--GGAA--T--T--ACAGCCAA------TATA----------------------CACAAATGCAATGCAAAGCTTATATTTTTAATCGGACT-ATTATAGCATACAACGACCTCT
gi|8 : agacctgtcagttttccgctaatatattgcaaatgaaattctataattttggagtttaaaaacgttgccacacaaatagaacactttaatccatacagaagtctaattcggcagtatttctgtcccactgtaatgccgtcatcactatttcgtatttttactgtatgcattcgtccaatcactctttccaaatgcatgaaaaaaaAGTAAATAAAGACTTAAACTTTCACATGGGTTGAGTAATATTGGA--GGAA--T--T--ACAGCCAA------TGTAAACATA-AA-------------CATAAATGAAATGCAAAGTTTATATTTTGAATGGGATT-CTTTCTGCACATAACGACGTCTtgaacaagaggtcatcggtcttcctcc
gi|17 : gaccagtcactttttcgcctatatacttcaactgaaattctataattctggtgttctgtcacaagtttaaaaacgtttccacacataaagcacaagttaattcatgcaggagacctatttagcagtctttctgtgtctctgtaatgccatcatcataatctcgttttttcactctatccaaaaagtcatgaaaatactggtggccgagtttcattcaagttgtctctatcgtcaaatacAGAAAATAAAGACTTACACTTTCACATGGGATGGATAATATTGGA--GAAA--T--T--ACATCCAT------TGTTAACATA-AA-------------CACAAATGAAATGCAAAGTTTATATTTTAAATGGACCT-AATTCTGCACACAACGAACTCTtgaacaagaggtcaccggtcttcct
gi|1 : ACTTAATCTTTCACATGGAATGAATtgaacaagaggtcaccggtcttcct
gi|10 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaatTTCACATGGGCAGAACAATAT--GT--AAGA--ATTT--ACAGCCAAGCTTCTCATAAACATA-G---------------ATTAAC----TGCATTGTTTTAATTTTCCATAGAACTACTTcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|20 : atctttcaaatcgtctttctttggagttttcacacaagtagtacacttaaacctatacagggtaccaactgtgcaatctttctgttctactgtaaagacattattattatctcgattttttttgcaatatccattcgcccattctctttatccagacgttgatgaaaacatggaggtcgaggcacgtcccagtagtctctgtcatcctacactctgacaaaatagTGAATAATATTTTG--GGAA--T--T--GCTGCCAG------TATACGCATG-AA-------------CACAATTGAAATGCCAAGTATATATTTT-AATCGGACT-TTTTaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|1 : AGTATTGGATTAGG------T--ACAGCCAA------TATATACATACACATAAAAAAATAAACACAAATGAGATGCCAAGTTTATATATTTAATCCGACT-ATTTCTTTACCCTACGAACTTTataccccacgtaaaagaggctacatgtctcc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): CAAATGTTATAGAAAGGGAAACTAATTTCCCTTTACGGTGT
Alignments
lowQualScore : 11111111 1111111111111111 111111 1111111111 44444444444444444444444444444444444
lowQualScore : 444 66666666 1 2 0 777 11 0 33 2 1 2 777 0 1 444 0 666 33 2 6666666666666666 777777 222222 66666 4 3333333333 2 0 2 44 888 1 0 2 33 99 55 3 777 2 0 2 77777 0 77 3 44444444444444444444444444444444444 4 7 1 1 9 1
lowQualScore : ... ........ . . . ... .. . .. . . . ... . . ... . ... .. . ................ ...... ...... ..... . .......... . . . .. ... . . . .. .. .. . ... . . . ..... . .. . ................................... . . . . . .
lowQualScore : 888 44444444 0 0 6 999 66 6 00 2 0 4 999 7 4 111 2 999 44 5 2222222222222222 777777 222222 22222 9 4444444444 8 6 5 66 666 0 9 9 99 55 00 4 000 2 5 9 44444 7 33 1 66666666666666666666666666666666666 2 5 0 0 9 0
consensus : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNA-TTTAGCAGTCTTTCTGTTCC-ACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTG----GAGGAA--T-TACAGCCAA------TATANACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
Reference ( family-2754 ) : CTTTTTCG--C-T----A-TATANTTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNA-TNTAGCAGTCTTTCTGTTTC-NCTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTNGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTG----GAGGAA--T-TACAGCCAA------TATAAACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
gi|1 : --C-T----A-TATAATTCAACTGAAATGCTCTGACTTT---GAAATTCTG---CAA-----------------CATATATAGCACACTTTAATCCATACAGGACACCCA-TTCAGCCGTCTTTCTGTTCC-ACTGTAATGCCACCATCAC--C-ATCTCGATTTATATATTCAT-TCG--T---CCC------TTCACTCAAGGATATATAGTCTATATAATTCCTTGCTTCATTTT-ATTCAAACTGTCATGAAAGT--TTGGTGGCCGATGAGCAT-TCAAGTGGTGTCTGTCATTAT-CACTCTGACAAAACAATCCCTG-AAAA--ATAC
gi|1 : CTTAATCTTTCACATGGAATGAATCA-TAttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|1 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaataATAAGTATTG----GATTAG--G-TACAGCCAA------TATATACA-T-ACACATAAAAAAATAAA-CACAAATGAGATGCCAAGTTTATATATTTAATCCGACTATTTCTTTACCCTACGAACTTTatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|10 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaatacttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagGTTTTCACACAAGTAGTACACTTAAACCTATACAGGGTACCAACTGT-GCAATCTTTCTGTTCT-ACTGTAAAGACA---TTAT--T-AT---------------TATCTCGATT---TTT------TTTGCA-----ATATCCA----------TTCGCCCATTCTCTTT-ATCCAGACGTTGATGAAAACA--TGGAGGTCGAGGCACGT-CCCAGTAGTCTCTGTCATCCTACACTCTGACAAAATAGTTCggaacaataagtcact
gi|10 : atctttcaaatcgtctttctttggaTTCACATGGGCAGAACAA-TA-TG----TAAGAAT-T-TACAGCCAAGCTTCTCATAAACA-T----------------------AGATTAACTGCATTGTTTTAATTTTCCATAGAACTACTTAAGCAacatgggcagaacaatatgtaagaatttacagccaagcttctcataaacatagattaactgcattgttttaattttccatagaactacttaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|11 : atctttcaaatcgtctttctttggagttttcacacaagtagtacacttaaacctatacagggtaccaactgtgcaatctttctgttctactgtaaagacattattattatctcgattttttttgcaatatccattcgcccattctctttatccagacgttgatgaaaacatggaggtcgaggcacgtcccagtagtctctgtcatcctacactctgacaaaatagTTTTG--C-TTCATG-TATAACTCATCTGAAAT-CTA----------------CTGTT-----TTTAAA---GTTGCCTTACATATATTACATTTAAATCTATTCATGGGACAAA-TGTTGCAGTATGTCTGTTCA-ACTGTAACGGTA---TTAT--C-AT---------------CATCTCG--A---CAT------TTTGCT-----ATATCCA----------TTGGACCATT-ATTTTCATCCAAACTCTGATGGAAA-G-CTGGTGGCAGAGGCA-AT-TCAAGTA------GTCATTGTA-ACTTTGACAAAATAGTCCCT--AAAC--ATATAAAAAACATATCCTACAATTTAAGAGACAAAGCTTCGAAC-ATCACATGGGGAGAAAAA-TA--------AGTGATTT-TACAGCCAAGC----TTCAAA-A-G-A---------------A-CACAAATAAACTACG----TTACCTTTTGAtcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|12 : aTCACAAGTTTGAAAATGCTGCAACACATACAGCACATTTTGG-CCATGCAGGAGACTCA-TTAAATAGTCGTTCTGTTTT-A----AATGCTA---GCAT--T-AA---------------CATCTTG--T---CGT------TTCGCT-----ATATATA----------TTCGTCTCTTAACTCT-ATCCAAACTGTCATGAACAAA-CTGGTGGCGTAGGTACGT-TTGAGTCGACTCTGTTATCTTGGGCTCAGACAAAACAATCCC----------TAC-AAA---ATATCCTGTAACTAAGCAAACAAA
gi|13 : tcgtctctgtatttcaactgatatTTTCG--CCT----A-TATGATATAACTGGACCTCTCTAATTTT---CGAAGTCTGTCACAAGTTTAATAACATTGCTATAAATACAGCATACTTAAGTCCATGCAGGAGACCTA-GTAATCAGTTTTCCAGGTCA-ATTGT----C--------T--T-AC---------------CATCT-G--TTTATTT------TTCACT-----GTATGCA-------------------------T-ATCAAACCTTTCATGAAAACG-TTGGAGACAGGGGATTGT-TCAAGTCGTCGCTGTCAGCCTACGTTCT
gi|14 : cagatcggtcaataCTTTTTCT--C-A----AGTATAATTCAACCGAAAGTCGCAAATTTC---GAAGGGATGTCACAAGTTTAAAAGCGTTGTCGCATAT-------ACTTTATTCCTTGTAGGAGACCAA-TAT---TGTCCTT---TTTT-G--GAAATGTAA---TCG---C-AC---------------CACCTTGA-T---TTT------TTTGCT-----ATACCCA----------TTTGTTTATTCTCTCT-ATCCAAACTTTGATCAAA
gi|15 : tcagatcgatccTTTTTCG--CCT----A-GTTCATTCAACTCTAATTCTGTGATTTTTTTATA-TTCTGTCACACGTTTAAAAACGTTGCCACACGTATAGCACAATTAAACACATACAGGAGACCCA-TTTAGCAATCTTTTTGATCC-ATTATAATG--A---TAATGCC-AT---------------CA-------------T------TTCGCT-----ATATACA-----------TCGTCCCATCACTCT-ATCCcatcaaatctgat
gi|16 : accggtcaaAGTTTCAAAACATTACAACACATTTAACACAGACCAATC--TGAAGAAGACCCA-GTTTGCAGTCTTTCTGTTACAAATGCAATAGTA---TCAC--C-TA---------------CATCTCA--A---GTG------TTCGTT-----ATAT-CAT---------TTCGCCCATGCTCTCT-ACCCAAAATTTTAT--CAACGACTGGTGGCCGAAGtg
gi|17 : ttctcctgtaaaagttcactggtttctAGAAAATAAAGACTTACACTTTCACATGGGATGGATAA-TATTG----GAGAAA--T-TACATCCAT------TGTTAACA-TAA---------------A-CACAAATGAAATGCAAAGTTTATATTTTAAATGGACCTAATTCTGCACACAACGAACTCTc
gi|18 : --C-T----G-TATAATCCAACTGAAATT-TCTAATTTT---GGAGTTTTGTCACATGTTTAAAA-CGTTGCCACAAATAGAGGACACTTTGATATATGCAGGGGACCCA-TTTAGCAGTATTTTTGTTCC-ACTGTtgaacaagaggtcaccggtcttcct
gi|19 : TGAAACAG-CTGGTGACCG-GACACTT-TTAGATATTTTCTGTCAGCTTGCACGTTGACCAAATAGTCCCTG-AAAA--TCATATAA---TTCTCTTTTTAATTATCAAATGAAACTTTAA
gi|2 : CTGAATTTCTCTGATTTTT--GGAGTTATGTCACCAGTTTAAAAACGTTGCCAAGCGTATAGCAAACTTTAATCCATGCAGGAGAC-AA-TTTAGCAGTTTTTCTGTTCC-ACTGTAATGCTT---TCAT--C-AA---------------CATCTCG--T---TTTT-----TTCGCT-----ATATACA----------TTCGTCAATTTTCTCT-ATCCAAATGTTCATGAAAAAG-GTAATGGCCGAGGTAAGT-TCAAGTCATTTCTATCATACTACACTCTGACAAAATGGTCTCTGAAAAA--ATAC-AAA---ACATCCTGTAACTTGGGAAATAAAGCCTTAAACCTTTATATTGGGTCAATGA-TACTG----AAGAAA--T-TATACCCAA------TCTTCCCA-TAA---------------A-CACAAA-GAAATGCTAAGTTTATGTTTT-AATAGAATTAAATCC-----TTACGACCTTTcat
gi|20 : tcacatgtttcgaataggacaagatgagataatcgtatacagtatcagattttgattgttttctcttTGAATAA-TATTT----TGGGAA--T-TGCTGCCAG------TATACGCA-TGA---------------A-CACAATTGAAATGCCAAGTATATATTTT-AATCGGAC--TTTTTATACCCCACGtgaacaaggggtcaccggtcttatt
gi|21 : AAA-CTTGTGACCGAAGTACAT-TCAAGTGTTCTCTGTCATCCTGCACTCTGGCAAAATAGTtaaaagaggctacatgtctcc
gi|3 : tccactgtacatTTTTTCCTCC-T----A-GAAAATTAAACTAAAATTGGTTGATTTT---TCAGTCTTTTCG-AGGTTTAATGACGCGGCCATACAT-----------TAAACCATGGAGGAAACAAA-TTC-----TGTTTCTGTTTA-AATGAAATGCCC---TCAT--CGAT---------------CATCTCT--A---TTT------TTCGTT-----ATATCAA----------TTTGTCCATTCTCTCT-ATCCAAACACTGATCAATAAA-CTGGTGACCAAGGCGCATAGCCAG-CGCCTCTGTAATCTTAAACTCTGAACAAATAATCCCTG-AAAATTATACAAAA---CTAGTCTGTAACTTTGGAAGTCAAACCTCAGACGTGCACATGGGGTGAACAA-TATTA----GATAAT--T-TACAGCCAA------TCTTCACATT-A---------------T-CACAAATGAACTGC-AAGCTTTGATTGTTAATATAACTACTTTAGCAC-CTACGGCCT
gi|4 : gtaCTTTTTCG--C-T----A-TATATTTCAACTGAAATTCTATAATTTT---GGTGTTCTGTCACAAGTTTAAAAACGTTTTCACACATAAAGCACAAGTTAATCCATGCAGGAGACCTA-TATAGCAGTCTTTCTGTGTC-TCTGTAATGCCA---TCAT--C-AT---------------TATTTCG--T---TTT------TTCACT-----TTATGCA----------TTCGTCCCTTCACTCT-ATCCAAAAAGTCATGAAAATG-CTGGTGGCCTAGTTTCAT-TCAAGTTGTCTCTACCGCCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGATGAATAG-TATTG----GAGGGA--A-TACAGCCAA------TGTAAACA-T-A---------------ACCACAAACGATATGCAAAGTTTTTATTTTAAATGGGACTCTTTCTGCACACAACGACCTCTtgtcaaagggacactggttttcatcc
gi|5 : TTTTTCA--C-TT---A-TATATTTCAACTG--------------T---GA--CTCTGTCACAAGTTTAAAAGCGTTGCCAAACATGTAACACACTTCAATCCATACAGGAAACCAA-T--------------GTTCC-ACTGTAATGCCA---TCAT--C-AC---------------CATCTCG--T---TTTC-----TTCACT-----ATATGCA----------TTCGTCTCTTCACTCT-ATCCAAACTGTCATGAAAA-G-CTGGCGGCCGGTTTACAT-TCAAGTTTTCTCTGTCATCCTACACTCTAACAAAATAGTCCCTG-AAAA--ATACAAAT---ATATGCTGTAGCTT------TGAAATTTTAAACTTTCACATGGGGTG-ATTA-TATTT----GAGGAA--T-TACAGCCAA------TAAACACA-T-GC--------------A-CACATATGAAATGCCAAGTTTATATTTTT-ATCAGACTATTTTGGCAT-CTACGAC
gi|6 : actagtaaaTTCTC---C-T----T-TATAATTCATCTGAAATTTCTTTATTGT---TGAGTTCTGTCACAAGTTTGAAATCGTTACCACACACA--------TTTAATCTAT----------TA-AATAGTA---TTCCAGTTCC-GCTGTAAC-CCAG--TCAT--C-AC---------------CATCTCA--T---GTTGTTGAGTTTGCT-----GCATGTA----------TTTGTTCCTTCACTAT-ATCCAAACATTCATGAACAAA-CTGGTGACAGAGGTCCGT-ATA-----TTTCT----TCCTACACTCTGACAAAA-AGTCCCT------------AAAA---ATATTCTG-AACGTAGAACATAAAGCTTTAAACTTACAAATTGTATGAATAA-TATT-----GAGAAA--T-TACAGC----------------------------------------TGAATAAAATGCCAAATTTATATTTTTAATAGAACTgtgttgaacaagaggtcaccggtcttcc
gi|7 : aggtcggtcaattaTTTTCCG--C-T----AATATATTGCAAATGAAATTCTATAATTTT---GGAGTT------------TAAAAACGTTGCCACACAAATAGAACACTTTAATCCATACAGAAGTCTAA-TTCGGCAGTATTTCTGTCCC-ACTGTAATGCCG---TCAT--C-AC---------------TATTTCG--T---ATT------TTTACT-----GTATGCA----------TTCGTCCAATCACTCT-TTCCAAATG--CATGAAAAgcccgtactttacccttcgacattttgaacaatgggcaaccagtcttcttcc
gi|7 : agacctgtcagTGCACTTCCATAAAATAGTCCTT---AAA--ATACTAAA---ATATCCTGTCTCTAAGGAAATAAAGCCTAAAGGTTTCAGATAGGGTGAATAA-TATTG----GAGGAA--T-TACAGCCAA------TAT------------------------A-CACAAATGCAATGCAAAGCTTATATTTTTAATCGGACTATTATAGCATACAACGACCTCTaaatgcacttccataaaatagtccttaaaatactaaaatatcctgtctctaaggaaataaagcctaaaggtttcagatagggtgaataatattggaggaattacagccaatatacacaaatgcaatgcaaagcttatatttttaatcggactattatagcatacaacgacctcttgaacaagaggtcatcggtcttcctcc
gi|8 : agacctgtcagttttccgctaatatattgcaaatgaaattctataattttggagtttaaaaacgttgccacacaaatagaacactttaatccatacagaagtctaattcggcagtatttctgtcccactgtaatgccgtcatcactatttcgtatttttactgtatgcattcgtccaatcactctttccaaatgcatgaaaaaaaCTTTTTCG--CCT----A-TATACTTCAACTGAAATTCTATAATTCT---GGTGTTCTGTCACAAGTTTAAAAACGTTTCCACACATAAAGCACAAGTTAATTCATGCAGGAGACCTA-TTTAGCAGTCTTTCTGTGTC-TCTGTAATGCCA---TCAT--C-AT---------------AATCTCG--T---TTT------------------------------------------TTCACTCT-ATCCAAAAAGTCATGAAAATA-CTGGTGGCCGAGTTTCAT-TCAAGTTGTCTCTATCGTCtgaacaagaggtcatcggtcttcctcc
gi|8 : gaccagtcaAGTAAATAAAGACTTAAACTTTCACATGGGTTGAGTAA-TATTG----GAGGAA--T-TACAGCCAA------TGTAAACA-TAA---------------A-CATAAATGAAATGCAAAGTTTATATTTTGAATGGGATTCTTTCTGCACATAACGACGTCTaaatacagtaaataaagacttaaactttcacatgggttgagtaatattggaggaattacagccaatgtaaacataaacataaatgaaatgcaaagtttatattttgaatgggattctttctgcacataacgacgtcttgaacaagaggtcaccggtcttcct
gi|9 : gaccagtcactttttcgcctatatacttcaactgaaattctataattctggtgttctgtcacaagtttaaaaacgtttccacacataaagcacaagttaattcatgcaggagacctatttagcagtctttctgtgtctctgtaatgccatcatcataatctcgttttttcactctatccaaaaagtcatgaaaatactggtggccgagtttcattcaagttgtctctatcgtcaaatacCTTTTTCG--CCT----A-TATATTTCAACTGAAATTCTATAATTTT---GGGATTCTGTCATAAGTTTAAAAACGTTGCCACACATATAGCACAAGTTAATCCATGCAGGAGACCTT-TTAAGCAGTCTTTCTGTTTC-TCTGTATTGCCA---TCAT--A-AT---------------AATCTCG--T---TTT------TTCGTT-----ATATGCA----------TTCGTCCCTTCACTCT-ATCCAAACTGTCATGAAAATG-CTGGTGGCTGAGTTTCAT-TCAAGTTGTCTCTATAATCCTACAATCTGACAAAAGAG-CTCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGGTGCATAA-TATTGAAATAAACAA--TATATAGTTAA-------ATAAACtgaacaagaggtcaccggtcttcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CAAATGTTATAGAAAGGGAAACTAATTTCCCTTTACGGTGT
Alignments
lowQualScore : 11111111 1111111111111111 111111 1111111111 333333333333333333333333
lowQualScore : 444 66666666 0 2 0 777 11 0 33 2 1 2 66 333 2 0 666 33 2 6666666666666666 777777 222222 66666 4 3333333333 2 0 2 44 888 1 0 2 77 99 55 3 777 2 0 2 0 0 77 44 3 888888888888888888888888 3 4 7 1 1 9 1
lowQualScore : ... ........ . . . ... .. . .. . . . .. ... . . ... .. . ................ ...... ...... ..... . .......... . . . .. ... . . . .. .. .. . ... . . . . . .. .. . ........................ . . . . . . .
lowQualScore : 888 44444444 8 0 6 999 66 6 00 2 0 4 22 999 4 2 999 44 5 2222222222222222 777777 222222 22222 9 4444444444 8 6 5 66 666 0 9 9 11 55 00 4 000 2 5 9 8 7 33 22 8 222222222222222222222222 3 2 5 0 0 9 0
consensus : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAA--TNTACACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
Reference ( family-2754 ) : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TTAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAA--TATANACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
gi|1 : --C-T----A-TATAATTCAACTGAAATGCTCTGACTTT---GAAATTCTG---CAA-----------------CATATATAGCACACTTTAATCCATACAGGACACCCAT-TCAGCCGTC--TTTCTGTT-CCACTGTAATGCCACCATCAC--C-ATCTCGATTTATATATTCAT-TCG--T---CCC------TTCACTCAAGGATATATAGTCTATATAATTCCTTGCTTCATTTT-ATTCAAACTGTCATGAAAGT--TTGGTGGCCGATGAGCAT-TCAAGTGGTGTCTGTCATTAT-CACTCTGACAAAACAATCCCTG-AAAA--ATAC
gi|1 : CTTAATCTTTCACATGGAATGAATCA-TAttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|1 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaataATAAGTATTGGATTAG--GTACAGCCAA--TATATACA-T-ACACATAAAAAAATAAA-CACAAATGAGATGCCAAGTTTATATATTTAATCCGACTATTTCTTTACCCTACGAACTTTatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|10 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaatacttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagGTTTTCACACAAGTAGTACACTTAAACCTATACAGGGTACCAAC-TGTGCAATC--TTTCTGTT-CTACTGTAAAGACA---TTAT--T-AT---------------TATCTCGATT---TTT------TTTGCA-----ATATCCA----------TTCGCCCATTCTCTTT-ATCCAGACGTTGATGAAAACA--TGGAGGTCGAGGCACGT-CCCAGTAGTCTCTGTCATCCTACACTCTGACAAAATAGTTCggaacaataagtcact
gi|10 : atctttcaaatcgtctttctttggaTTCACATGGGCAGAACAA-TA-TGTAAGAAT-TTACAGCCAA--GCTTCTCA-TAA---------------A-CATAGATTAACTGCATTGTTTTAATTTTCCATAGAACTACTTAAGCAacatgggcagaacaatatgtaagaatttacagccaagcttctcataaacatagattaactgcattgttttaattttccatagaactacttaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|11 : atctttcaaatcgtctttctttggagttttcacacaagtagtacacttaaacctatacagggtaccaactgtgcaatctttctgttctactgtaaagacattattattatctcgattttttttgcaatatccattcgcccattctctttatccagacgttgatgaaaacatggaggtcgaggcacgtcccagtagtctctgtcatcctacactctgacaaaatagTTTTG--C-TTCATG-TATAACTCATCTGAAAT-CTA----------------CTGTT-----TTTAAA---GTTGCCTTACATATATTACATTTAAATCTATTCATGGGACAAAT-GTTGCAGTA--TGTCTGTT-CAACTGTAACGGTA---TTAT--C-AT---------------CATCTCG--A---CAT------TTTGCT-----ATATCCA----------TTGGACCATT-ATTTTCATCCAAACTCTGATGGAAA-G-CTGGTGGCAGAGGCA-AT-TCAAGTA------GTCATTGTA-ACTTTGACAAAATAGTCCCT--AAAC--ATATAAAAAACATATCCTACAATTTAAGAGACAAAGCTTCGAAC-ATCACATGGGGAGAAAAA-TA----AGTGATTTTACAGCCAAGCTTCAAA-A-G-A---------------A-CACAAATAAACTACG----TTACCTTTTGAtcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|12 : aTCACAAGTTTGAAAATGCTGCAACACATACAGCACATTTTGG-CCATGCAGGAGACTCAT-TAAATAGTC--GTTCTGTT-TTA----AATGCTA---GCAT--T-AA---------------CATCTTG--T---CGT------TTCGCT-----ATATATA----------TTCGTCTCTTAACTCT-ATCCAAACTGTCATGAACAAA-CTGGTGGCGTAGGTACGT-TTGAGTCGACTCTGTTATCTTGGGCTCAGACAAAACAATCCC----------TAC-AAA---ATATCCTGTAACTAAGCAAACAAA
gi|13 : tcgtctctgtatttcaactgatatTTTCG--CCT----A-TATGATATAACTGGACCTCTCTAATTTT---CGAAGTCTGTCACAAGTTTAATAACATTGCTATAAATACAGCATACTTAAGTCCATGCAGGAGACCTAG-TAATCAGTT--TTCCAGGT-CAATTGT----C--------T--T-AC---------------CATCT-G--TTTATTT------TTCACT-----GTATGCA-------------------------T-ATCAAACCTTTCATGAAAACG-TTGGAGACAGGGGATTGT-TCAAGTCGTCGCTGTCAGCCTACGTTCT
gi|14 : cagatcggtcaataCTTTTTCT--C-A----AGTATAATTCAACCGAAAGTCGCAAATTTC---GAAGGGATGTCACAAGTTTAAAAGCGTTGTCGCATAT-------ACTTTATTCCTTGTAGGAGACCAATATT----GTCCTTTTTTG--------GAAATGTAA---TCG---C-AC---------------CACCTTGA-T---TTT------TTTGCT-----ATACCCA----------TTTGTTTATTCTCTCT-ATCCAAACTTTGATCAAA
gi|15 : tcagatcgatccTTTTTCG--CCT----A-GTTCATTCAACTCTAATTCTGTGATTTTTTTATA-TTCTGTCACACGTTTAAAAACGTTGCCACACGTATAGCACAATTAAACACATACAGGAGACCCAT-TTAGCAATC--TTTTTGAT-CCATTATAATG--A---TAATGCC-AT---------------CA-------------T------TTCGCT-----ATATACA-----------TCGTCCCATCACTCT-ATCCcatcaaatctgat
gi|16 : accggtcaaAGTTTCAAAACATTACAACACATTTAACACAGACCAATC--TGAAGAAGACCCAG-TTTGCAGTC--TTTCTGTTACAAATGCAATAGTA---TCAC--C-TA---------------CATCTCA--A---GTG------TTCGTT-----ATAT-CAT---------TTCGCCCATGCTCTCT-ACCCAAAATTTTAT--CAACGACTGGTGGCCGAAGtg
gi|17 : ttctcctgtaaaagttcactggtttctAGAAAATAAAGACTTACACTTTCACATGGGATGGATAA-TATTGGAGAAA--TTACATCCAT--TGTTAACA-TAA---------------A-CACAAATGAAATGCAAAGTTTATATTTTAAATGGACCTAATTCTGCACACAACGAACTCTc
gi|18 : --C-T----G-TATAATCCAACTGAAATT-TCTAATTTT---GGAGTTTTGTCACATGTTTAAAA-CGTTGCCACAAATAGAGGACACTTTGATATATGCAGGGGACCCAT-TTAGCAGTA--TTTTTGTT-CCACTGTtgaacaagaggtcaccggtcttcct
gi|19 : TGAAACAG-CTGGTGACCG-GACACTT-TTAGATATTTTCTGTCAGCTTGCACGTTGACCAAATAGTCCCTG-AAAA--TCATATAA---TTCTCTTTTTAATTATCAAATGAAACTTTAA
gi|2 : CTGAATTTCTCTGATTTTT--GGAGTTATGTCACCAGTTTAAAAACGTTGCCAAGCGTATAGCAAACTTTAATCCATGCAGGAGAC-AAT-TTAGCAGTT--TTTCTGTT-CCACTGTAATGCTT---TCAT--C-AA---------------CATCTCG--T---TTTT-----TTCGCT-----ATATACA----------TTCGTCAATTTTCTCT-ATCCAAATGTTCATGAAAAAG-GTAATGGCCGAGGTAAGT-TCAAGTCATTTCTATCATACTACACTCTGACAAAATGGTCTCTGAAAAA--ATAC-AAA---ACATCCTGTAACTTGGGAAATAAAGCCTTAAACCTTTATATTGGGTCAATGA-TACTGAAGAAA--TTATACCCAA--TCTTCCCA-TAA---------------A-CACAAA-GAAATGCTAAGTTTATGTTTT-AATAGAATTAAATCC-----TTACGACCTTTcat
gi|20 : tcacatgtttcgaataggacaagatgagataatcgtatacagtatcagattttgattgttttctcttTGAATAA-TATTTTGGGAA--TTGCTGCCAG--TATACGCA-TGA---------------A-CACAATTGAAATGCCAAGTATATATTTT-AATCGGAC--TTTTTATACCCCACGtgaacaaggggtcaccggtcttatt
gi|21 : AAA-CTTGTGACCGAAGTACAT-TCAAGTGTTCTCTGTCATCCTGCACTCTGGCAAAATAGTtaaaagaggctacatgtctcc
gi|3 : tccactgtacatTTTTTCCTCC-T----A-GAAAATTAAACTAAAATTGGTTGATTTT---TCAGTCTTTTCG-AGGTTTAATGACGCGGCCATACAT-----------TAAACCATGGAGGAAACAAAT-TC-----TG--TTTCTGTT-TAAATGAAATGCCC---TCAT--CGAT---------------CATCTCT--A---TTT------TTCGTT-----ATATCAA----------TTTGTCCATTCTCTCT-ATCCAAACACTGATCAATAAA-CTGGTGACCAAGGCGCATAGCCAG-CGCCTCTGTAATCTTAAACTCTGAACAAATAATCCCTG-AAAATTATACAAAA---CTAGTCTGTAACTTTGGAAGTCAAACCTCAGACGTGCACATGGGGTGAACAA-TATTAGATAAT--TTACAGCCAA--TCTTCACATT-A---------------T-CACAAATGAACTGC-AAGCTTTGATTGTTAATATAACTACTTTAGCAC-CTACGGCCT
gi|4 : gtaCTTTTTCG--C-T----A-TATATTTCAACTGAAATTCTATAATTTT---GGTGTTCTGTCACAAGTTTAAAAACGTTTTCACACATAAAGCACAAGTTAATCCATGCAGGAGACCTAT-ATAGCAGTC--TTTCTGTG-TCTCTGTAATGCCA---TCAT--C-AT---------------TATTTCG--T---TTT------TTCACT-----TTATGCA----------TTCGTCCCTTCACTCT-ATCCAAAAAGTCATGAAAATG-CTGGTGGCCTAGTTTCAT-TCAAGTTGTCTCTACCGCCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGATGAATAG-TATTGGAGGGA--ATACAGCCAA--TGTAAACA-T-A---------------ACCACAAACGATATGCAAAGTTTTTATTTTAAATGGGACTCTTTCTGCACACAACGACCTCTtgtcaaagggacactggttttcatcc
gi|5 : TTTTTCA--C-TT---A-TATATTTCAACTG--------------T---GA--CTCTGTCACAAGTTTAAAAGCGTTGCCAAACATGTAACACACTTCAATCCATACAGGAAACCAAT-----------------GTT-CCACTGTAATGCCA---TCAT--C-AC---------------CATCTCG--T---TTTC-----TTCACT-----ATATGCA----------TTCGTCTCTTCACTCT-ATCCAAACTGTCATGAAAA-G-CTGGCGGCCGGTTTACAT-TCAAGTTTTCTCTGTCATCCTACACTCTAACAAAATAGTCCCTG-AAAA--ATACAAAT---ATATGCTGTAGCTT------TGAAATTTTAAACTTTCACATGGGGTG-ATTA-TATTTGAGGAA--TTACAGCCAA--TAAACACA-T-GC--------------A-CACATATGAAATGCCAAGTTTATATTTTT-ATCAGACTATTTTGGCAT-CTACGAC
gi|6 : actagtaaaTTCTC---C-T----T-TATAATTCATCTGAAATTTCTTTATTGT---TGAGTTCTGTCACAAGTTTGAAATCGTTACCACACACA--------TTTAAT-------------CTAT-TAAATAGTA--TTCCAGTT-CCGCTGTAAC-CCAG--TCAT--C-AC---------------CATCTCA--T---GTTGTTGAGTTTGCT-----GCATGTA----------TTTGTTCCTTCACTAT-ATCCAAACATTCATGAACAAA-CTGGTGACAGAGGTCCGT-ATA-----TTTCT----TCCTACACTCTGACAAAA-AGTCCCT------------AAAA---ATATTCTG-AACGTAGAACATAAAGCTTTAAACTTACAAATTGTATGAATAA-TATT-GAGAAA--TTACAGC------------------------------------TGAATAAAATGCCAAATTTATATTTTTAATAGAACTgtgttgaacaagaggtcaccggtcttcc
gi|7 : aggtcggtcaattaTTTTCCG--C-T----AATATATTGCAAATGAAATTCTATAATTTT---GGAGTT------------TAAAAACGTTGCCACACAAATAGAACACTTTAATCCATACAGAAGTCTAAT-TCGGCAGTA--TTTCTGTC-CCACTGTAATGCCG---TCAT--C-AC---------------TATTTCG--T---ATT------TTTACT-----GTATGCA----------TTCGTCCAATCACTCT-TTCCAAATG--CATGAAAAgcccgtactttacccttcgacattttgaacaatgggcaaccagtcttcttcc
gi|7 : agacctgtcagTGCACTTCCATAAAATAGTCCTT---AAA--ATACTAAA---ATATCCTGTCTCTAAGGAAATAAAGCCTAAAGGTTTCAGATAGGGTGAATAA-TATTGGAGGAA--TTACAGCCAA--TAT------------------------A-CACAAATGCAATGCAAAGCTTATATTTTTAATCGGACTATTATAGCATACAACGACCTCTaaatgcacttccataaaatagtccttaaaatactaaaatatcctgtctctaaggaaataaagcctaaaggtttcagatagggtgaataatattggaggaattacagccaatatacacaaatgcaatgcaaagcttatatttttaatcggactattatagcatacaacgacctcttgaacaagaggtcatcggtcttcctcc
gi|8 : agacctgtcagttttccgctaatatattgcaaatgaaattctataattttggagtttaaaaacgttgccacacaaatagaacactttaatccatacagaagtctaattcggcagtatttctgtcccactgtaatgccgtcatcactatttcgtatttttactgtatgcattcgtccaatcactctttccaaatgcatgaaaaaaaCTTTTTCG--CCT----A-TATACTTCAACTGAAATTCTATAATTCT---GGTGTTCTGTCACAAGTTTAAAAACGTTTCCACACATAAAGCACAAGTTAATTCATGCAGGAGACCTAT-TTAGCAGTC--TTTCTGTG-TCTCTGTAATGCCA---TCAT--C-AT---------------AATCTCG--T---TTT------------------------------------------TTCACTCT-ATCCAAAAAGTCATGAAAATA-CTGGTGGCCGAGTTTCAT-TCAAGTTGTCTCTATCGTCtgaacaagaggtcatcggtcttcctcc
gi|8 : gaccagtcaAGTAAATAAAGACTTAAACTTTCACATGGGTTGAGTAA-TATTGGAGGAA--TTACAGCCAA--TGTAAACA-TAA---------------A-CATAAATGAAATGCAAAGTTTATATTTTGAATGGGATTCTTTCTGCACATAACGACGTCTaaatacagtaaataaagacttaaactttcacatgggttgagtaatattggaggaattacagccaatgtaaacataaacataaatgaaatgcaaagtttatattttgaatgggattctttctgcacataacgacgtcttgaacaagaggtcaccggtcttcct
gi|9 : gaccagtcactttttcgcctatatacttcaactgaaattctataattctggtgttctgtcacaagtttaaaaacgtttccacacataaagcacaagttaattcatgcaggagacctatttagcagtctttctgtgtctctgtaatgccatcatcataatctcgttttttcactctatccaaaaagtcatgaaaatactggtggccgagtttcattcaagttgtctctatcgtcaaatacCTTTTTCG--CCT----A-TATATTTCAACTGAAATTCTATAATTTT---GGGATTCTGTCATAAGTTTAAAAACGTTGCCACACATATAGCACAAGTTAATCCATGCAGGAGACCTTT-TAAGCAGTC--TTTCTGTT-TCTCTGTATTGCCA---TCAT--A-AT---------------AATCTCG--T---TTT------TTCGTT-----ATATGCA----------TTCGTCCCTTCACTCT-ATCCAAACTGTCATGAAAATG-CTGGTGGCTGAGTTTCAT-TCAAGTTGTCTCTATAATCCTACAATCTGACAAAAGAG-CTCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGGTGCATAA-TATTGAA--------ATAAACAA--TATATAtgaacaagaggtcaccggtcttcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CAAATGTTATAGAAAGGGAAACTAATTTCCCTTTACGGTGT
Alignments
lowQualScore : 11111111 1111111111111111 111111 1111111111 4444444444444444444444444
lowQualScore : 444 66666666 0 2 0 777 11 0 33 2 1 2 55 333 2 0 666 33 2 6666666666666666 777777 222222 66666 4 3333333333 2 0 2 44 888 1 0 2 77 99 55 3 777 2 0 2 0 77 2 2222222222222222222222222 3 4 7 1 1 9 1
lowQualScore : ... ........ . . . ... .. . .. . . . .. ... . . ... .. . ................ ...... ...... ..... . .......... . . . .. ... . . . .. .. .. . ... . . . . .. . ......................... . . . . . . .
lowQualScore : 888 44444444 8 0 6 999 66 6 00 2 0 4 55 999 4 2 999 44 5 2222222222222222 777777 222222 22222 9 4444444444 8 6 5 66 666 0 9 9 11 55 00 4 000 2 5 9 8 99 2 1111111111111111111111111 3 2 5 0 0 9 0
consensus : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNTNC-ACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
Reference ( family-2754 ) : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNTAC-ACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
gi|1 : --C-T----A-TATAATTCAACTGAAATGCTCTGACTTT---GAAATTCTG---CAA-----------------CATATATAGCACACTTTAATCCATACAGGACACCCAT-TCAGCCGTC--TTTCTGTT-CCACTGTAATGCCACCATCAC--C-ATCTCGATTTATATATTCAT-TCG--T---CCC------TTCACTCAAGGATATATAGTCTATATAATTCCTTGCTTCATTTT-ATTCAAACTGTCATGAAAGT--TTGGTGGCCGATGAGCAT-TCAAGTGGTGTCTGTCATTAT-CACTCTGACAAAACAATCCCTG-AAAA--ATAC
gi|1 : CTTAATCTTTCACATGGAATGAATCA-TAttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|1 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaataATAAGTATTGGATTAG--GTACAGCCAATATAT-ACA-T-ACACATAAAAAAATAAA-CACAAATGAGATGCCAAGTTTATATATTTAATCCGACTATTTCTTTACCCTACGAACTTTatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|10 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaatacttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagGTTTTCACACAAGTAGTACACTTAAACCTATACAGGGTACCAAC-TGTGCAATC--TTTCTGTT-CTACTGTAAAGACA---TTAT--T-AT---------------TATCTCGATT---TTT------TTTGCA-----ATATCCA----------TTCGCCCATTCTCTTT-ATCCAGACGTTGATGAAAACA--TGGAGGTCGAGGCACGT-CCCAGTAGTCTCTGTCATCCTACACTCTGACAAAATAGTTCggaacaataagtcact
gi|10 : atctttcaaatcgtctttctttggaTTCACATGGGCAGAACAA-TA-TGTAAGAAT-TTACAGCCAAGCTTC-TCA-TAA---------------A-CATAGATTAACTGCATTGTTTTAATTTTCCATAGAACTACTTAAGCAacatgggcagaacaatatgtaagaatttacagccaagcttctcataaacatagattaactgcattgttttaattttccatagaactacttaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|11 : atctttcaaatcgtctttctttggagttttcacacaagtagtacacttaaacctatacagggtaccaactgtgcaatctttctgttctactgtaaagacattattattatctcgattttttttgcaatatccattcgcccattctctttatccagacgttgatgaaaacatggaggtcgaggcacgtcccagtagtctctgtcatcctacactctgacaaaatagTTTTG--C-TTCATG-TATAACTCATCTGAAAT-CTA----------------CTGTT-----TTTAAA---GTTGCCTTACATATATTACATTTAAATCTATTCATGGGACAAAT-GTTGCAGTA--TGTCTGTT-CAACTGTAACGGTA---TTAT--C-AT---------------CATCTCG--A---CAT------TTTGCT-----ATATCCA----------TTGGACCATT-ATTTTCATCCAAACTCTGATGGAAA-G-CTGGTGGCAGAGGCA-AT-TCAAGTA------GTCATTGTA-ACTTTGACAAAATAGTCCCT--AAAC--ATATAAAAAACATATCCTACAATTTAAGAGACAAAGCTTCGAAC-ATCACATGGGGAGAAAAA-TA----AGTGATTTTACAGCCAAGCTTCAAAA-G-A---------------A-CACAAATAAACTACG----TTACCTTTTGAtcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|12 : aTCACAAGTTTGAAAATGCTGCAACACATACAGCACATTTTGG-CCATGCAGGAGACTCAT-TAAATAGTC--GTTCTGTT-TTA----AATGCTA---GCAT--T-AA---------------CATCTTG--T---CGT------TTCGCT-----ATATATA----------TTCGTCTCTTAACTCT-ATCCAAACTGTCATGAACAAA-CTGGTGGCGTAGGTACGT-TTGAGTCGACTCTGTTATCTTGGGCTCAGACAAAACAATCCC----------TAC-AAA---ATATCCTGTAACTAAGCAAACAAA
gi|13 : tcgtctctgtatttcaactgatatTTTCG--CCT----A-TATGATATAACTGGACCTCTCTAATTTT---CGAAGTCTGTCACAAGTTTAATAACATTGCTATAAATACAGCATACTTAAGTCCATGCAGGAGACCTAG-TAATCAGTT--TTCCAGGT-CAATTGT----C--------T--T-AC---------------CATCT-G--TTTATTT------TTCACT-----GTATGCA-------------------------T-ATCAAACCTTTCATGAAAACG-TTGGAGACAGGGGATTGT-TCAAGTCGTCGCTGTCAGCCTACGTTCT
gi|14 : cagatcggtcaataCTTTTTCT--C-A----AGTATAATTCAACCGAAAGTCGCAAATTTC---GAAGGGATGTCACAAGTTTAAAAGCGTTGTCGCATAT-------ACTTTATTCCTTGTAGGAGACCAATATT----GTCCTTTTTTG--------GAAATGTAA---TCG---C-AC---------------CACCTTGA-T---TTT------TTTGCT-----ATACCCA----------TTTGTTTATTCTCTCT-ATCCAAACTTTGATCAAA
gi|15 : tcagatcgatccTTTTTCG--CCT----A-GTTCATTCAACTCTAATTCTGTGATTTTTTTATA-TTCTGTCACACGTTTAAAAACGTTGCCACACGTATAGCACAATTAAACACATACAGGAGACCCAT-TTAGCAATC--TTTTTGAT-CCATTATAATG--A---TAATGCC-AT---------------CA-------------T------TTCGCT-----ATATACA-----------TCGTCCCATCACTCT-ATCCcatcaaatctgat
gi|16 : accggtcaaAGTTTCAAAACATTACAACACATTTAACACAGACCAATC--TGAAGAAGACCCAG-TTTGCAGTC--TTTCTGTTACAAATGCAATAGTA---TCAC--C-TA---------------CATCTCA--A---GTG------TTCGTT-----ATAT-CAT---------TTCGCCCATGCTCTCT-ACCCAAAATTTTAT--CAACGACTGGTGGCCGAAGtg
gi|17 : ttctcctgtaaaagttcactggtttctAGAAAATAAAGACTTACACTTTCACATGGGATGGATAA-TATTGGAGAAA--TTACATCCATTGTTA-ACA-TAA---------------A-CACAAATGAAATGCAAAGTTTATATTTTAAATGGACCTAATTCTGCACACAACGAACTCTc
gi|18 : --C-T----G-TATAATCCAACTGAAATT-TCTAATTTT---GGAGTTTTGTCACATGTTTAAAA-CGTTGCCACAAATAGAGGACACTTTGATATATGCAGGGGACCCAT-TTAGCAGTA--TTTTTGTT-CCACTGTtgaacaagaggtcaccggtcttcct
gi|19 : TGAAACAG-CTGGTGACCG-GACACTT-TTAGATATTTTCTGTCAGCTTGCACGTTGACCAAATAGTCCCTG-AAAA--TCATATAA---TTCTCTTTTTAATTATCAAATGAAACTTTAA
gi|2 : CTGAATTTCTCTGATTTTT--GGAGTTATGTCACCAGTTTAAAAACGTTGCCAAGCGTATAGCAAACTTTAATCCATGCAGGAGAC-AAT-TTAGCAGTT--TTTCTGTT-CCACTGTAATGCTT---TCAT--C-AA---------------CATCTCG--T---TTTT-----TTCGCT-----ATATACA----------TTCGTCAATTTTCTCT-ATCCAAATGTTCATGAAAAAG-GTAATGGCCGAGGTAAGT-TCAAGTCATTTCTATCATACTACACTCTGACAAAATGGTCTCTGAAAAA--ATAC-AAA---ACATCCTGTAACTTGGGAAATAAAGCCTTAAACCTTTATATTGGGTCAATGA-TACTGAAGAAA--TTATACCCAATCTTC-CCA-TAA---------------A-CACAAA-GAAATGCTAAGTTTATGTTTT-AATAGAATTAAATCC-----TTACGACCTTTcat
gi|20 : tcacatgtttcgaataggacaagatgagataatcgtatacagtatcagattttgattgttttctcttTGAATAA-TATTTTGGGAA--TTGCTGCCAGTATAC-GCA-TGA---------------A-CACAATTGAAATGCCAAGTATATATTTT-AATCGGAC--TTTTTATACCCCACGtgaacaaggggtcaccggtcttatt
gi|21 : AAA-CTTGTGACCGAAGTACAT-TCAAGTGTTCTCTGTCATCCTGCACTCTGGCAAAATAGTtaaaagaggctacatgtctcc
gi|3 : tccactgtacatTTTTTCCTCC-T----A-GAAAATTAAACTAAAATTGGTTGATTTT---TCAGTCTTTTCG-AGGTTTAATGACGCGGCCATACAT-----------TAAACCATGGAGGAAACAAAT-TC-----TG--TTTCTGTT-TAAATGAAATGCCC---TCAT--CGAT---------------CATCTCT--A---TTT------TTCGTT-----ATATCAA----------TTTGTCCATTCTCTCT-ATCCAAACACTGATCAATAAA-CTGGTGACCAAGGCGCATAGCCAG-CGCCTCTGTAATCTTAAACTCTGAACAAATAATCCCTG-AAAATTATACAAAA---CTAGTCTGTAACTTTGGAAGTCAAACCTCAGACGTGCACATGGGGTGAACAA-TATTAGATAAT--TTACAGCCAATCTTC-ACATT-A---------------T-CACAAATGAACTGC-AAGCTTTGATTGTTAATATAACTACTTTAGCAC-CTACGGCCT
gi|4 : gtaCTTTTTCG--C-T----A-TATATTTCAACTGAAATTCTATAATTTT---GGTGTTCTGTCACAAGTTTAAAAACGTTTTCACACATAAAGCACAAGTTAATCCATGCAGGAGACCTAT-ATAGCAGTC--TTTCTGTG-TCTCTGTAATGCCA---TCAT--C-AT---------------TATTTCG--T---TTT------TTCACT-----TTATGCA----------TTCGTCCCTTCACTCT-ATCCAAAAAGTCATGAAAATG-CTGGTGGCCTAGTTTCAT-TCAAGTTGTCTCTACCGCCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGATGAATAG-TATTGGAGGGA--ATACAGCCAATGTAA-ACA-T-A---------------ACCACAAACGATATGCAAAGTTTTTATTTTAAATGGGACTCTTTCTGCACACAACGACCTCTtgtcaaagggacactggttttcatcc
gi|5 : TTTTTCA--C-TT---A-TATATTTCAACTG--------------T---GA--CTCTGTCACAAGTTTAAAAGCGTTGCCAAACATGTAACACACTTCAATCCATACAGGAAACCAAT-----------------GTT-CCACTGTAATGCCA---TCAT--C-AC---------------CATCTCG--T---TTTC-----TTCACT-----ATATGCA----------TTCGTCTCTTCACTCT-ATCCAAACTGTCATGAAAA-G-CTGGCGGCCGGTTTACAT-TCAAGTTTTCTCTGTCATCCTACACTCTAACAAAATAGTCCCTG-AAAA--ATACAAAT---ATATGCTGTAGCTT------TGAAATTTTAAACTTTCACATGGGGTG-ATTA-TATTTGAGGAA--TTACAGCCAATAAAC-ACA-T-GC--------------A-CACATATGAAATGCCAAGTTTATATTTTT-ATCAGACTATTTTGGCAT-CTACGAC
gi|6 : actagtaaaTTCTC---C-T----T-TATAATTCATCTGAAATTTCTTTATTGT---TGAGTTCTGTCACAAGTTTGAAATCGTTACCACACACA--------TTTAAT-------------CTAT-TAAATAGTA--TTCCAGTT-CCGCTGTAAC-CCAG--TCAT--C-AC---------------CATCTCA--T---GTTGTTGAGTTTGCT-----GCATGTA----------TTTGTTCCTTCACTAT-ATCCAAACATTCATGAACAAA-CTGGTGACAGAGGTCCGT-ATA-----TTTCT----TCCTACACTCTGACAAAA-AGTCCCT------------AAAA---ATATTCTG-AACGTAGAACATAAAGCTTTAAACTTACAAATTGTATGAATAA-TATT-GAGAAA--TTACAGC-----------------------------------TGAATAAAATGCCAAATTTATATTTTTAATAGAACTgtgttgaacaagaggtcaccggtcttcc
gi|7 : aggtcggtcaattaTTTTCCG--C-T----AATATATTGCAAATGAAATTCTATAATTTT---GGAGTT------------TAAAAACGTTGCCACACAAATAGAACACTTTAATCCATACAGAAGTCTAAT-TCGGCAGTA--TTTCTGTC-CCACTGTAATGCCG---TCAT--C-AC---------------TATTTCG--T---ATT------TTTACT-----GTATGCA----------TTCGTCCAATCACTCT-TTCCAAATG--CATGAAAAgcccgtactttacccttcgacattttgaacaatgggcaaccagtcttcttcc
gi|7 : agacctgtcagTGCACTTCCATAAAATAGTCCTT---AAA--ATACTAAA---ATATCCTGTCTCTAAGGAAATAAAGCCTAAAGGTTTCAGATAGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATAT-------------------------A-CACAAATGCAATGCAAAGCTTATATTTTTAATCGGACTATTATAGCATACAACGACCTCTaaatgcacttccataaaatagtccttaaaatactaaaatatcctgtctctaaggaaataaagcctaaaggtttcagatagggtgaataatattggaggaattacagccaatatacacaaatgcaatgcaaagcttatatttttaatcggactattatagcatacaacgacctcttgaacaagaggtcatcggtcttcctcc
gi|8 : agacctgtcagttttccgctaatatattgcaaatgaaattctataattttggagtttaaaaacgttgccacacaaatagaacactttaatccatacagaagtctaattcggcagtatttctgtcccactgtaatgccgtcatcactatttcgtatttttactgtatgcattcgtccaatcactctttccaaatgcatgaaaaaaaCTTTTTCG--CCT----A-TATACTTCAACTGAAATTCTATAATTCT---GGTGTTCTGTCACAAGTTTAAAAACGTTTCCACACATAAAGCACAAGTTAATTCATGCAGGAGACCTAT-TTAGCAGTC--TTTCTGTG-TCTCTGTAATGCCA---TCAT--C-AT---------------AATCTCG--T---TTT------------------------------------------TTCACTCT-ATCCAAAAAGTCATGAAAATA-CTGGTGGCCGAGTTTCAT-TCAAGTTGTCTCTATCGTCtgaacaagaggtcatcggtcttcctcc
gi|8 : gaccagtcaAGTAAATAAAGACTTAAACTTTCACATGGGTTGAGTAA-TATTGGAGGAA--TTACAGCCAATGTAA-ACA-TAA---------------A-CATAAATGAAATGCAAAGTTTATATTTTGAATGGGATTCTTTCTGCACATAACGACGTCTaaatacagtaaataaagacttaaactttcacatgggttgagtaatattggaggaattacagccaatgtaaacataaacataaatgaaatgcaaagtttatattttgaatgggattctttctgcacataacgacgtcttgaacaagaggtcaccggtcttcct
gi|9 : gaccagtcactttttcgcctatatacttcaactgaaattctataattctggtgttctgtcacaagtttaaaaacgtttccacacataaagcacaagttaattcatgcaggagacctatttagcagtctttctgtgtctctgtaatgccatcatcataatctcgttttttcactctatccaaaaagtcatgaaaatactggtggccgagtttcattcaagttgtctctatcgtcaaatacCTTTTTCG--CCT----A-TATATTTCAACTGAAATTCTATAATTTT---GGGATTCTGTCATAAGTTTAAAAACGTTGCCACACATATAGCACAAGTTAATCCATGCAGGAGACCTTT-TAAGCAGTC--TTTCTGTT-TCTCTGTATTGCCA---TCAT--A-AT---------------AATCTCG--T---TTT------TTCGTT-----ATATGCA----------TTCGTCCCTTCACTCT-ATCCAAACTGTCATGAAAATG-CTGGTGGCTGAGTTTCAT-TCAAGTTGTCTCTATAATCCTACAATCTGACAAAAGAG-CTCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGGTGCATAA-TATTGAAtgaacaagaggtcaccggtcttcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CAAATGTTATAGAAAGGGAAACTAATTTCCCTTTACGGTGT
Alignments
lowQualScore : 11111111 1111111111111111 111111 1111111111 3333333333333333333333333
lowQualScore : 444 66666666 0 2 0 777 11 0 33 2 1 2 55 333 2 0 666 33 2 6666666666666666 777777 222222 66666 4 3333333333 2 0 2 44 888 1 0 2 77 99 55 3 777 2 0 2 0 77 2 9999999999999999999999999 3 4 7 1 1 9 1
lowQualScore : ... ........ . . . ... .. . .. . . . .. ... . . ... .. . ................ ...... ...... ..... . .......... . . . .. ... . . . .. .. .. . ... . . . . .. . ......................... . . . . . . .
lowQualScore : 888 44444444 8 0 6 999 66 6 00 2 0 4 55 999 4 2 999 44 5 2222222222222222 777777 222222 22222 9 4444444444 8 6 5 66 666 0 9 9 11 55 00 4 000 2 5 9 8 99 2 6666666666666666666666666 3 2 5 0 0 9 0
consensus : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNTNC-ACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
Reference ( family-2754 ) : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNTNC-ACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
gi|1 : --C-T----A-TATAATTCAACTGAAATGCTCTGACTTT---GAAATTCTG---CAA-----------------CATATATAGCACACTTTAATCCATACAGGACACCCAT-TCAGCCGTC--TTTCTGTT-CCACTGTAATGCCACCATCAC--C-ATCTCGATTTATATATTCAT-TCG--T---CCC------TTCACTCAAGGATATATAGTCTATATAATTCCTTGCTTCATTTT-ATTCAAACTGTCATGAAAGT--TTGGTGGCCGATGAGCAT-TCAAGTGGTGTCTGTCATTAT-CACTCTGACAAAACAATCCCTG-AAAA--ATAC
gi|1 : CTTAATCTTTCACATGGAATGAATCA-TAttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|1 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaataATAAGTATTGGATTAG--GTACAGCCAATATAT-ACA-T-ACACATAAAAAAATAAA-CACAAATGAGATGCCAAGTTTATATATTTAATCCGACTATTTCTTTACCCTACGAACTTTatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|10 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaatacttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagGTTTTCACACAAGTAGTACACTTAAACCTATACAGGGTACCAAC-TGTGCAATC--TTTCTGTT-CTACTGTAAAGACA---TTAT--T-AT---------------TATCTCGATT---TTT------TTTGCA-----ATATCCA----------TTCGCCCATTCTCTTT-ATCCAGACGTTGATGAAAACA--TGGAGGTCGAGGCACGT-CCCAGTAGTCTCTGTCATCCTACACTCTGACAAAATAGTTCggaacaataagtcact
gi|10 : atctttcaaatcgtctttctttggaTTCACATGGGCAGAACAA-TA-TGTAAGAAT-TTACAGCCAAGCTTC-TCA-TAA---------------A-CATAGATTAACTGCATTGTTTTAATTTTCCATAGAACTACTTAAGCAacatgggcagaacaatatgtaagaatttacagccaagcttctcataaacatagattaactgcattgttttaattttccatagaactacttaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|11 : atctttcaaatcgtctttctttggagttttcacacaagtagtacacttaaacctatacagggtaccaactgtgcaatctttctgttctactgtaaagacattattattatctcgattttttttgcaatatccattcgcccattctctttatccagacgttgatgaaaacatggaggtcgaggcacgtcccagtagtctctgtcatcctacactctgacaaaatagTTTTG--C-TTCATG-TATAACTCATCTGAAAT-CTA----------------CTGTT-----TTTAAA---GTTGCCTTACATATATTACATTTAAATCTATTCATGGGACAAAT-GTTGCAGTA--TGTCTGTT-CAACTGTAACGGTA---TTAT--C-AT---------------CATCTCG--A---CAT------TTTGCT-----ATATCCA----------TTGGACCATT-ATTTTCATCCAAACTCTGATGGAAA-G-CTGGTGGCAGAGGCA-AT-TCAAGTA------GTCATTGTA-ACTTTGACAAAATAGTCCCT--AAAC--ATATAAAAAACATATCCTACAATTTAAGAGACAAAGCTTCGAAC-ATCACATGGGGAGAAAAA-TA----AGTGATTTTACAGCCAAGCTTCAAAA-G-A---------------A-CACAAATAAACTACG----TTACCTTTTGAtcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|12 : aTCACAAGTTTGAAAATGCTGCAACACATACAGCACATTTTGG-CCATGCAGGAGACTCAT-TAAATAGTC--GTTCTGTT-TTA----AATGCTA---GCAT--T-AA---------------CATCTTG--T---CGT------TTCGCT-----ATATATA----------TTCGTCTCTTAACTCT-ATCCAAACTGTCATGAACAAA-CTGGTGGCGTAGGTACGT-TTGAGTCGACTCTGTTATCTTGGGCTCAGACAAAACAATCCC----------TAC-AAA---ATATCCTGTAACTAAGCAAACAAA
gi|13 : tcgtctctgtatttcaactgatatTTTCG--CCT----A-TATGATATAACTGGACCTCTCTAATTTT---CGAAGTCTGTCACAAGTTTAATAACATTGCTATAAATACAGCATACTTAAGTCCATGCAGGAGACCTAG-TAATCAGTT--TTCCAGGT-CAATTGT----C--------T--T-AC---------------CATCT-G--TTTATTT------TTCACT-----GTATGCA-------------------------T-ATCAAACCTTTCATGAAAACG-TTGGAGACAGGGGATTGT-TCAAGTCGTCGCTGTCAGCCTACGTTCT
gi|14 : cagatcggtcaataCTTTTTCT--C-A----AGTATAATTCAACCGAAAGTCGCAAATTTC---GAAGGGATGTCACAAGTTTAAAAGCGTTGTCGCATAT-------ACTTTATTCCTTGTAGGAGACCAATATT----GTCCTTTTTTG--------GAAATGTAA---TCG---C-AC---------------CACCTTGA-T---TTT------TTTGCT-----ATACCCA----------TTTGTTTATTCTCTCT-ATCCAAACTTTGATCAAA
gi|15 : tcagatcgatccTTTTTCG--CCT----A-GTTCATTCAACTCTAATTCTGTGATTTTTTTATA-TTCTGTCACACGTTTAAAAACGTTGCCACACGTATAGCACAATTAAACACATACAGGAGACCCAT-TTAGCAATC--TTTTTGAT-CCATTATAATG--A---TAATGCC-AT---------------CA-------------T------TTCGCT-----ATATACA-----------TCGTCCCATCACTCT-ATCCcatcaaatctgat
gi|16 : accggtcaaAGTTTCAAAACATTACAACACATTTAACACAGACCAATC--TGAAGAAGACCCAG-TTTGCAGTC--TTTCTGTTACAAATGCAATAGTA---TCAC--C-TA---------------CATCTCA--A---GTG------TTCGTT-----ATAT-CAT---------TTCGCCCATGCTCTCT-ACCCAAAATTTTAT--CAACGACTGGTGGCCGAAGtg
gi|17 : ttctcctgtaaaagttcactggtttctAGAAAATAAAGACTTACACTTTCACATGGGATGGATAA-TATTGGAGAAA--TTACATCCATTGTTA-ACA-TAA---------------A-CACAAATGAAATGCAAAGTTTATATTTTAAATGGACCTAATTCTGCACACAACGAACTCTc
gi|18 : --C-T----G-TATAATCCAACTGAAATT-TCTAATTTT---GGAGTTTTGTCACATGTTTAAAA-CGTTGCCACAAATAGAGGACACTTTGATATATGCAGGGGACCCAT-TTAGCAGTA--TTTTTGTT-CCACTGTtgaacaagaggtcaccggtcttcct
gi|19 : TGAAACAG-CTGGTGACCG-GACACTT-TTAGATATTTTCTGTCAGCTTGCACGTTGACCAAATAGTCCCTG-AAAA--TCATATAA---TTCTCTTTTTAATTATCAAATGAAACTTTAA
gi|2 : CTGAATTTCTCTGATTTTT--GGAGTTATGTCACCAGTTTAAAAACGTTGCCAAGCGTATAGCAAACTTTAATCCATGCAGGAGAC-AAT-TTAGCAGTT--TTTCTGTT-CCACTGTAATGCTT---TCAT--C-AA---------------CATCTCG--T---TTTT-----TTCGCT-----ATATACA----------TTCGTCAATTTTCTCT-ATCCAAATGTTCATGAAAAAG-GTAATGGCCGAGGTAAGT-TCAAGTCATTTCTATCATACTACACTCTGACAAAATGGTCTCTGAAAAA--ATAC-AAA---ACATCCTGTAACTTGGGAAATAAAGCCTTAAACCTTTATATTGGGTCAATGA-TACTGAAGAAA--TTATACCCAATCTTC-CCA-TAA---------------A-CACAAA-GAAATGCTAAGTTTATGTTTT-AATAGAATTAAATCC-----TTACGACCTTTcat
gi|20 : tcacatgtttcgaataggacaagatgagataatcgtatacagtatcagattttgattgttttctcttTGAATAA-TATTTTGGGAA--TTGCTGCCAGTATAC-GCA-TGA---------------A-CACAATTGAAATGCCAAGTATATATTTT-AATCGGAC--TTTTTATACCCCACGtgaacaaggggtcaccggtcttatt
gi|21 : AAA-CTTGTGACCGAAGTACAT-TCAAGTGTTCTCTGTCATCCTGCACTCTGGCAAAATAGTtaaaagaggctacatgtctcc
gi|3 : tccactgtacatTTTTTCCTCC-T----A-GAAAATTAAACTAAAATTGGTTGATTTT---TCAGTCTTTTCG-AGGTTTAATGACGCGGCCATACAT-----------TAAACCATGGAGGAAACAAAT-TC-----TG--TTTCTGTT-TAAATGAAATGCCC---TCAT--CGAT---------------CATCTCT--A---TTT------TTCGTT-----ATATCAA----------TTTGTCCATTCTCTCT-ATCCAAACACTGATCAATAAA-CTGGTGACCAAGGCGCATAGCCAG-CGCCTCTGTAATCTTAAACTCTGAACAAATAATCCCTG-AAAATTATACAAAA---CTAGTCTGTAACTTTGGAAGTCAAACCTCAGACGTGCACATGGGGTGAACAA-TATTAGATAAT--TTACAGCCAATCTTC-ACATT-A---------------T-CACAAATGAACTGC-AAGCTTTGATTGTTAATATAACTACTTTAGCAC-CTACGGCCT
gi|4 : gtaCTTTTTCG--C-T----A-TATATTTCAACTGAAATTCTATAATTTT---GGTGTTCTGTCACAAGTTTAAAAACGTTTTCACACATAAAGCACAAGTTAATCCATGCAGGAGACCTAT-ATAGCAGTC--TTTCTGTG-TCTCTGTAATGCCA---TCAT--C-AT---------------TATTTCG--T---TTT------TTCACT-----TTATGCA----------TTCGTCCCTTCACTCT-ATCCAAAAAGTCATGAAAATG-CTGGTGGCCTAGTTTCAT-TCAAGTTGTCTCTACCGCCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGATGAATAG-TATTGGAGGGA--ATACAGCCAATGTAA-ACA-T-A---------------ACCACAAACGATATGCAAAGTTTTTATTTTAAATGGGACTCTTTCTGCACACAACGACCTCTtgtcaaagggacactggttttcatcc
gi|5 : TTTTTCA--C-TT---A-TATATTTCAACTG--------------T---GA--CTCTGTCACAAGTTTAAAAGCGTTGCCAAACATGTAACACACTTCAATCCATACAGGAAACCAAT-----------------GTT-CCACTGTAATGCCA---TCAT--C-AC---------------CATCTCG--T---TTTC-----TTCACT-----ATATGCA----------TTCGTCTCTTCACTCT-ATCCAAACTGTCATGAAAA-G-CTGGCGGCCGGTTTACAT-TCAAGTTTTCTCTGTCATCCTACACTCTAACAAAATAGTCCCTG-AAAA--ATACAAAT---ATATGCTGTAGCTT------TGAAATTTTAAACTTTCACATGGGGTG-ATTA-TATTTGAGGAA--TTACAGCCAATAAAC-ACA-T-GC--------------A-CACATATGAAATGCCAAGTTTATATTTTT-ATCAGACTATTTTGGCAT-CTACGAC
gi|6 : actagtaaaTTCTC---C-T----T-TATAATTCATCTGAAATTTCTTTATTGT---TGAGTTCTGTCACAAGTTTGAAATCGTTACCACACACA--------TTTAAT-------------CTAT-TAAATAGTA--TTCCAGTT-CCGCTGTAAC-CCAG--TCAT--C-AC---------------CATCTCA--T---GTTGTTGAGTTTGCT-----GCATGTA----------TTTGTTCCTTCACTAT-ATCCAAACATTCATGAACAAA-CTGGTGACAGAGGTCCGT-ATA-----TTTCT----TCCTACACTCTGACAAAA-AGTCCCT------------AAAA---ATATTCTG-AACGTAGAACATAAAGCTTTAAACTTACAAATTGTATGAATAA-TATT-GAGAAA--TTACAGC-----------------------------------TGAATAAAATGCCAAATTTATATTTTTAATAGAACTgtgttgaacaagaggtcaccggtcttcc
gi|7 : aggtcggtcaattaTTTTCCG--C-T----AATATATTGCAAATGAAATTCTATAATTTT---GGAGTT------------TAAAAACGTTGCCACACAAATAGAACACTTTAATCCATACAGAAGTCTAAT-TCGGCAGTA--TTTCTGTC-CCACTGTAATGCCG---TCAT--C-AC---------------TATTTCG--T---ATT------TTTACT-----GTATGCA----------TTCGTCCAATCACTCT-TTCCAAATG--CATGAAAAgcccgtactttacccttcgacattttgaacaatgggcaaccagtcttcttcc
gi|7 : agacctgtcagTGCACTTCCATAAAATAGTCCTT---AAA--ATACTAAA---ATATCCTGTCTCTAAGGAAATAAAGCCTAAAGGTTTCAGATAGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATAT-------------------------A-CACAAATGCAATGCAAAGCTTATATTTTTAATCGGACTATTATAGCATACAACGACCTCTaaatgcacttccataaaatagtccttaaaatactaaaatatcctgtctctaaggaaataaagcctaaaggtttcagatagggtgaataatattggaggaattacagccaatatacacaaatgcaatgcaaagcttatatttttaatcggactattatagcatacaacgacctcttgaacaagaggtcatcggtcttcctcc
gi|8 : agacctgtcagttttccgctaatatattgcaaatgaaattctataattttggagtttaaaaacgttgccacacaaatagaacactttaatccatacagaagtctaattcggcagtatttctgtcccactgtaatgccgtcatcactatttcgtatttttactgtatgcattcgtccaatcactctttccaaatgcatgaaaaaaaCTTTTTCG--CCT----A-TATACTTCAACTGAAATTCTATAATTCT---GGTGTTCTGTCACAAGTTTAAAAACGTTTCCACACATAAAGCACAAGTTAATTCATGCAGGAGACCTAT-TTAGCAGTC--TTTCTGTG-TCTCTGTAATGCCA---TCAT--C-AT---------------AATCTCG--T---TTT------------------------------------------TTCACTCT-ATCCAAAAAGTCATGAAAATA-CTGGTGGCCGAGTTTCAT-TCAAGTTGTCTCTATCGTCtgaacaagaggtcatcggtcttcctcc
gi|8 : gaccagtcaAGTAAATAAAGACTTAAACTTTCACATGGGTTGAGTAA-TATTGGAGGAA--TTACAGCCAATGTAA-ACA-TAA---------------A-CATAAATGAAATGCAAAGTTTATATTTTGAATGGGATTCTTTCTGCACATAACGACGTCTaaatacagtaaataaagacttaaactttcacatgggttgagtaatattggaggaattacagccaatgtaaacataaacataaatgaaatgcaaagtttatattttgaatgggattctttctgcacataacgacgtcttgaacaagaggtcaccggtcttcct
gi|9 : gaccagtcactttttcgcctatatacttcaactgaaattctataattctggtgttctgtcacaagtttaaaaacgtttccacacataaagcacaagttaattcatgcaggagacctatttagcagtctttctgtgtctctgtaatgccatcatcataatctcgttttttcactctatccaaaaagtcatgaaaatactggtggccgagtttcattcaagttgtctctatcgtcaaatacCTTTTTCG--CCT----A-TATATTTCAACTGAAATTCTATAATTTT---GGGATTCTGTCATAAGTTTAAAAACGTTGCCACACATATAGCACAAGTTAATCCATGCAGGAGACCTTT-TAAGCAGTC--TTTCTGTT-TCTCTGTATTGCCA---TCAT--A-AT---------------AATCTCG--T---TTT------TTCGTT-----ATATGCA----------TTCGTCCCTTCACTCT-ATCCAAACTGTCATGAAAATG-CTGGTGGCTGAGTTTCAT-TCAAGTTGTCTCTATAATCCTACAATCTGACAAAAGAG-CTCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGGTGCATAA-TATTGAAtgaacaagaggtcaccggtcttcct
blockSeqs : CTC TTCATG A TTT AA GT C A A GT CCT A G GC G T TTTA GTTGAG . C T A C GT CGA A A AG GA TT A . C G TT C TCTCATAA C A C A A A A
blockSeqs : G CTA C T AG AT T A . TT C . . . . T ATT T . C . A . TC CA A . CG G . A . A . T C TCAAAAGA . G G G T C T
blockSeqs : T AAG C . AG AC T C . AA A . . . . A AT C . A . C . TG AA A . CG G . A . C . . G TAACATAA . A A A C A C
blockSeqs : G CTA G . AG AC C T . AA C . . . . C A . . G . A . TT CG T . AT G . A . G . . C TCCCATAA . T T C T A T
blockSeqs : G TTA C . AG AT C A . TA T . . . . C T . . C . C . TT AG A . CA G . A . G . . A ACGCATGA . C A A A A A
blockSeqs : A TAA C . TG TT A C . TT C . . . . T A . . A . A . TT AG A . GT G . T . T . . C TCACATTA . A T G T . T
blockSeqs : G CTA T . AG AG G C . TA C . . . . A T . . A . A . GT AA A . CG . . A . A . . G ACACATGC . C T C G . A
blockSeqs : G CTA A . AG AT C C . TA A . . . . A A . . C . A . AC AA G . TG . . . . G . . A AAACATAA . C T A A . A
blockSeqs : G TG T . TG AA C A . TA T . . . . T T . . G . C . AG TG T . TT . . . . T . . A AAACATA . A G C T
blockSeqs : . TA A . GA GT A A . AA G . . . . T T . . G . C . TG AA A . TG . . T . . G . . A . G
blockSeqs : TA A . A AT C T . CG C . . . . C T . . G . C . AT TA C . TG . . . . . . . .
blockSeqs : TT A . . AA C A . TA A . . . . C T . . G . A . AG TG T . A .
blockSeqs : . . . AT A T . AA A . . . . C T . . G . C . TG G T . . .
blockSeqs : A A A . T C . . . . T T . . . . . . G G
blockSeqs : . . T . C C . . . . T . . . . . . .
blockSeqs : . . T . . . .
blockSeqCons : CTA***** *** C*************** ***** ********** NG* *** TCACATGA*****************
originalCons : CTTTTTCG--C-T----A-TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AT---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNTNC-ACA-T-A---------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
finalCons : CTTTTTCG--CCTA-----TATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTT-CCACTGTAATGCCA---TCAT--C-AC---------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNTTCACATGA-----------------A-CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CAAATGTTATAGAAAGGGAAACTAATTTCCCTTTACGGTGT
Alignments
lowQualScore : 111111111111 111111 1111111111 111111111 11111111
lowQualScore : 0 2 0 777 11 0 00 2 1 2 55 333 0 8888888 2 33 2 777777777777 777777 222222 66666 4 3333333333 2 0 2 44 888 1 0 2 77 99 55 3 777 2 0 2 0 77 2 888888888 2 22222222 4 7 1 1 9 1
lowQualScore : . . . ... .. . .. . . . .. ... . ....... . .. . ............ ...... ...... ..... . .......... . . . .. ... . . . .. .. .. . ... . . . . .. . ......... . ........ . . . . . .
lowQualScore : 8 0 6 999 66 6 11 2 0 4 55 999 7 0000000 5 44 5 222222222222 777777 222222 22222 9 4444444444 8 6 5 66 666 0 9 9 11 55 00 4 000 2 5 9 8 99 2 222222222 2 11111111 2 5 0 0 9 0
consensus : CTTTTTCGCCTATATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTTCCACTGTAATGCC------A-T--CATC-AC------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNT-----T-CACATAAA--------CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
Reference ( family-2754 ) : CTTTTTCGCCTATATAATTCAACTGAAATTCTNTAATTTT---GGAGTTCTGTCACAAGTTTAAAAACGTTGCCACACATATAGCACACTTTAATCCATGCAGGAGACCNAT-TNAGCAGTC--TTTCTGTTCCACTGTAATGCC------A-T--CATC-AC------------CATCTCG--T---TTT------TTCGCT-----ATATGCA----------TTCGTCCNTTCACTCT-ATCCAAACNNTCATGAAAANG-CTGGTGGCCGAGGTNCGT-TCAAGTCGTCTCTGTCATCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTAACTTAGNAAATAAAGCCTTAAACTTTCACATGGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATNT-----T-CACATGAA--------CACAAATGAAATGCNAAGTTTATATTTTNAATNGGACTATTTCNGCACACNACGACCTCT
gi|1 : CTATATAATTCAACTGAAATGCTCTGACTTT---GAAATTCTG---CAA-----------------CATATATAGCACACTTTAATCCATACAGGACACCCAT-TCAGCCGTC--TTTCTGTTCCACTGTAATGCCACCATCA-C--CATC-TCGATTTATATATTCAT-TCG--T---CCC------TTCACTCAAGGATATATAGTCTATATAATTCCTTGCTTCATTTT-ATTCAAACTGTCATGAAAGT--TTGGTGGCCGATGAGCAT-TCAAGTGGTGTCTGTCATTAT-CACTCTGACAAAACAATCCCTG-AAAA--ATAC
gi|1 : CTTAATCTTTCACATGGAATGAATCA-TAttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|1 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaataATAAGTATTGGATTAG--GTACAGCCAATATATACATACACATAAAAAAATAAACACAAATGAGATGCCAAGTTTATATATTTAATCCGACTATTTCTTTACCCTACGAACTTTatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagataagtattggattaggtacagccaatatatacatacacataaaaaaataaacacaaatgagatgccaagtttatatatttaatccgactatttctttaccctacgaactttggaacaataagtcact
gi|10 : ctatataattcaactgaaatgctctgactttgaaattctgcaacatatatagcacactttaatccatacaggacacccattcagccgtctttctgttccactgtaatgccaccatcaccatctcgatttatatattcattcgtcccttcactcaaggatatatagtctatataattccttgcttcattttattcaaactgtcatgaaagtttggtggccgatgagcattcaagtggtgtctgtcattatcactctgacaaaacaatccctgaaaaatacttaatctttcacatggaatgaatcataatcttacgaacggattgtttgaaatagttgattaattaaaactgcaacgtgtaaaattacagaaagGTTTTCACACAAGTAGTACACTTAAACCTATACAGGGTACCAAC-TGTGCAATC--TTTCTGTTCTACTGTAAAGAC------A-T--TATT-AT------------TATCTCGATT---TTT------TTTGCA-----ATATCCA----------TTCGCCCATTCTCTTT-ATCCAGACGTTGATGAAAACA--TGGAGGTCGAGGCACGT-CCCAGTAGTCTCTGTCATCCTACACTCTGACAAAATAGTTCggaacaataagtcact
gi|10 : atctttcaaatcgtctttctttggaTTCACATGGGCAGAACAA-TA-TGTAAGAAT-TTACAGCCAAGCT-----T-CTCATAAA--------CATAGATTAACTGCATTGTTTTAATTTTCCATAGAACTACTTAAGCAacatgggcagaacaatatgtaagaatttacagccaagcttctcataaacatagattaactgcattgttttaattttccatagaactacttaagcatcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|11 : atctttcaaatcgtctttctttggagttttcacacaagtagtacacttaaacctatacagggtaccaactgtgcaatctttctgttctactgtaaagacattattattatctcgattttttttgcaatatccattcgcccattctctttatccagacgttgatgaaaacatggaggtcgaggcacgtcccagtagtctctgtcatcctacactctgacaaaatagTGTATAACTCATCTGAAAT-CTA----------------CTGTT-----TTTAAA---GTTGCCTTACATATATTACATTTAAATCTATTCATGGGACAAAT-GTTGCAGTA--TGTCTGTTCAACTGTAACGGT------A-T--TATC-AT------------CATCTCG--A---CAT------TTTGCT-----ATATCCA----------TTGGACCATT-ATTTTCATCCAAACTCTGATGGAAA-G-CTGGTGGCAGAGGCA-AT-TCAAGTA------GTCATTGTA-ACTTTGACAAAATAGTCCCT--AAAC--ATATAAAAAACATATCCTACAATTTAAGAGACAAAGCTTCGAAC-ATCACATGGGGAGAAAAA-TA----AGTGATTTTACAGCCAAGCT-----T-CAAAAGAA--------CACAAATAAACTACG----TTACCTTTTGAtcgtaccgccttttgaacacacgggccaccgtttttctttc
gi|12 : attttgcttcaTCACAAGTTTGAAAATGCTGCAACACATACAGCACATTTTGG-CCATGCAGGAGACTCAT-TAAATAGTC--GTTCTGTTTTA----AATGCT------A-G--CATT-AA------------CATCTTG--T---CGT------TTCGCT-----ATATATA----------TTCGTCTCTTAACTCT-ATCCAAACTGTCATGAACAAA-CTGGTGGCGTAGGTACGT-TTGAGTCGACTCTGTTATCTTGGGCTCAGACAAAACAATCCC----------TAC-AAA---ATATCCTGTAACTAAGCAAACAAA
gi|13 : tcgtctctgtatttcaactgatatTTTCGCCTATATGATATAACTGGACCTCTCTAATTTT---CGAAGTCTGTCACAAGTTTAATAACATTGCTATAAATACAGCATACTTAAGTCCATGCAGGAGACCTAG-TAATCAGTT--TTCCAGGTCAATTGT----C--------------TT-AC------------CATCT-G--TTTATTT------TTCACT-----GTATGCA-------------------------T-ATCAAACCTTTCATGAAAACG-TTGGAGACAGGGGATTGT-TCAAGTCGTCGCTGTCAGCCTACGTTCT
gi|14 : cagatcggtcaataCTTTTTCTCAAGTATAATTCAACCGAAAGTCGCAAATTTC---GAAGGGATGTCACAAGTTTAAAAGCGTTGTCGCATAT-------ACTTTATTCCTTGTAGGAGACCAATATT----GTCCTTTTTTG-------GAAATGTA------A-T--CG-C-AC------------CACCTTGA-T---TTT------TTTGCT-----ATACCCA----------TTTGTTTATTCTCTCT-ATCCAAACTTTGATCAAA
gi|15 : tcagatcgatccTTTTTCGCCTAGTTCATTCAACTCTAATTCTGTGATTTTTTTATA-TTCTGTCACACGTTTAAAAACGTTGCCACACGTATAGCACAATTAAACACATACAGGAGACCCAT-TTAGCAATC--TTTTTGATCCATTATAATG--------A-T--AAT--GC------------CATC----------AT------TTCGCT-----ATATACA-----------TCGTCCCATCACTCT-ATCCcatcaaatctgat
gi|16 : accggtcaaAGTTTCAAAACATTACAACACATTTAACACAGACCAATC--TGAAGAAGACCCAG-TTTGCAGTC--TTTCTGTTACA----AATGCA------A-TAGTATC-ACCTA---------CATCTCA--A---GTG------TTCGTT-----ATAT-CAT---------TTCGCCCATGCTCTCT-ACCCAAAATTTTAT--CAACGACTGGTGGCCGAAGtg
gi|17 : ttctcctgtaaaagttcactggtttctAGAAAATAAAGACTTACACTTTCACATGGGATGGATAA-TATTGGAGAAA--TTACATCCATTGT-----T-AACATAAA--------CACAAATGAAATGCAAAGTTTATATTTTAAATGGACCTAATTCTGCACACAACGAACTCTc
gi|18 : CTGTATAATCCAACTGAAATT-TCTAATTTT---GGAGTTTTGTCACATGTTTAAAA-CGTTGCCACAAATAGAGGACACTTTGATATATGCAGGGGACCCAT-TTAGCAGTA--TTTTTGTTCCACTGTtgaacaagaggtcaccggtcttcct
gi|19 : TGAAACAG-CTGGTGACCG-GACACTT-TTAGATATTTTCTGTCAGCTTGCACGTTGACCAAATAGTCCCTG-AAAA--TCATATAA---TTCTCTTTTTAATTATCAAATGAAACTTTAA
gi|2 : CTGAATTTCTCTGATTTTT--GGAGTTATGTCACCAGTTTAAAAACGTTGCCAAGCGTATAGCAAACTTTAATCCATGCAGGAGAC-AAT-TTAGCAGTT--TTTCTGTTCCACTGTAATGCT------T-T--CATC-AA------------CATCTCG--T---TTTT-----TTCGCT-----ATATACA----------TTCGTCAATTTTCTCT-ATCCAAATGTTCATGAAAAAG-GTAATGGCCGAGGTAAGT-TCAAGTCATTTCTATCATACTACACTCTGACAAAATGGTCTCTGAAAAA--ATAC-AAA---ACATCCTGTAACTTGGGAAATAAAGCCTTAAACCTTTATATTGGGTCAATGA-TACTGAAGAAA--TTATACCCAATCT-----T-CCCATAAA--------CACAAA-GAAATGCTAAGTTTATGTTTT-AATAGAATTAAATCC-----TTACGACCTTTcat
gi|20 : tcacatgtttcgaataggacaagatgagataatcgtatacagtatcagattttgattgttttctcttTGAATAA-TATTTTGGGAA--TTGCTGCCAGTAT-----A-CGCATGAA--------CACAATTGAAATGCCAAGTATATATTTT-AATCGGAC--TTTTTATACCCCACGtgaacaaggggtcaccggtcttatt
gi|21 : AAA-CTTGTGACCGAAGTACAT-TCAAGTGTTCTCTGTCATCCTGCACTCTGGCAAAATAGTtaaaagaggctacatgtctcc
gi|3 : tccactgtacatTTTTCCTCCTAGAAAATTAAACTAAAATTGGTTGATTTT---TCAGTCTTTTCG-AGGTTTAATGACGCGGCCATACAT-----------TAAACCATGGAGGAAACAAAT-TC-----TG--TTTCTGTTTAAATGAAATGCC------C-T--CATCGAT------------CATCTCT--A---TTT------TTCGTT-----ATATCAA----------TTTGTCCATTCTCTCT-ATCCAAACACTGATCAATAAA-CTGGTGACCAAGGCGCATAGCCAG-CGCCTCTGTAATCTTAAACTCTGAACAAATAATCCCTG-AAAATTATACAAAA---CTAGTCTGTAACTTTGGAAGTCAAACCTCAGACGTGCACATGGGGTGAACAA-TATTAGATAAT--TTACAGCCAATCT-----T-CACATTAT--------CACAAATGAACTGC-AAGCTTTGATTGTTAATATAACTACTTTAGCAC-CTACGGCCT
gi|4 : gtatCTTTTTCGC-TATATATTTCAACTGAAATTCTATAATTTT---GGTGTTCTGTCACAAGTTTAAAAACGTTTTCACACATAAAGCACAAGTTAATCCATGCAGGAGACCTAT-ATAGCAGTC--TTTCTGTGTCTCTGTAATGCC------A-T--CATC-AT------------TATTTCG--T---TTT------TTCACT-----TTATGCA----------TTCGTCCCTTCACTCT-ATCCAAAAAGTCATGAAAATG-CTGGTGGCCTAGTTTCAT-TCAAGTTGTCTCTACCGCCCTACACTCTGACAAAATAGTCCCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGATGAATAG-TATTGGAGGGA--ATACAGCCAATGT-----A-AACATAAC--------CACAAACGATATGCAAAGTTTTTATTTTAAATGGGACTCTTTCTGCACACAACGACCTCTtgtcaaagggacactggttttcatcc
gi|5 : TTTTTCACTTATATATTTCAACTG--------------T---GA--CTCTGTCACAAGTTTAAAAGCGTTGCCAAACATGTAACACACTTCAATCCATACAGGAAACCAAT-----------------GTTCCACTGTAATGCC------A-T--CATC-AC------------CATCTCG--T---TTTC-----TTCACT-----ATATGCA----------TTCGTCTCTTCACTCT-ATCCAAACTGTCATGAAAA-G-CTGGCGGCCGGTTTACAT-TCAAGTTTTCTCTGTCATCCTACACTCTAACAAAATAGTCCCTG-AAAA--ATACAAAT---ATATGCTGTAGCTT------TGAAATTTTAAACTTTCACATGGGGTG-ATTA-TATTTGAGGAA--TTACAGCCAATAA-----A-CACATGCA--------CACATATGAAATGCCAAGTTTATATTTTT-ATCAGACTATTTTGGCAT-CTACGAC
gi|6 : actagtaaaTTATTCTCCTTTATAATTCATCTGAAATTTCTTTATTGT---TGAGTTCTGTCACAAGTTTGAAATCGTTACCACACACAT--------TTAATC-------------TAT-TAAATAGTA--TTCCAGTTCCGCTGTAAC-CC------AGT--CATC-AC------------CATCTCA--T---GTTGTTGAGTTTGCT-----GCATGTA----------TTTGTTCCTTCACTAT-ATCCAAACATTCATGAACAAA-CTGGTGACAGAGGTCCGT-ATA-----TTTCT----TCCTACACTCTGACAAAA-AGTCCCT------------AAAA---ATATTCTG-AACGTAGAACATAAAGCTTTAAACTTACAAATTGTATGAATAA-TATT-GAGAAA--TTACAGC-----------------TG--------------AATAAAATGCCAAATTTATATTTTTAATAGAACTgtgttgaacaagaggtcaccggtcttcc
gi|7 : aggtcggtcaaTTTTCCGCTAATATATTGCAAATGAAATTCTATAATTTT---GGAGTT------------TAAAAACGTTGCCACACAAATAGAACACTTTAATCCATACAGAAGTCTAAT-TCGGCAGTA--TTTCTGTCCCACTGTAATGCC------G-T--CATC-AC------------TATTTCG--T---ATT------TTTACT-----GTATGCA----------TTCGTCCAATCACTCT-TTCCAAATG--CATGAAAAgcccgtactttacccttcgacattttgaacaatgggcaaccagtcttcttcc
gi|7 : agacctgtcagTGCACTTCCATAAAATAGTCCTT---AAA--ATACTAAA---ATATCCTGTCTCTAAGGAAATAAAGCCTAAAGGTTTCAGATAGGGTGAATAA-TATTGGAGGAA--TTACAGCCAATAT--------------A--------CACAAATGCAATGCAAAGCTTATATTTTTAATCGGACTATTATAGCATACAACGACCTCTaaatgcacttccataaaatagtccttaaaatactaaaatatcctgtctctaaggaaataaagcctaaaggtttcagatagggtgaataatattggaggaattacagccaatatacacaaatgcaatgcaaagcttatatttttaatcggactattatagcatacaacgacctcttgaacaagaggtcatcggtcttcctcc
gi|8 : agacctgtcagttttccgctaatatattgcaaatgaaattctataattttggagtttaaaaacgttgccacacaaatagaacactttaatccatacagaagtctaattcggcagtatttctgtcccactgtaatgccgtcatcactatttcgtatttttactgtatgcattcgtccaatcactctttccaaatgcatgaaaaaaaCTTTTTCGCCTATATACTTCAACTGAAATTCTATAATTCT---GGTGTTCTGTCACAAGTTTAAAAACGTTTCCACACATAAAGCACAAGTTAATTCATGCAGGAGACCTAT-TTAGCAGTC--TTTCTGTGTCTCTGTAATGCC------A-T--CATC-AT------------AATCTCG--T---TTT------------------------------------------TTCACTCT-ATCCAAAAAGTCATGAAAATA-CTGGTGGCCGAGTTTCAT-TCAAGTTGTCTCTATCGTCtgaacaagaggtcatcggtcttcctcc
gi|8 : gaccagtcaAGTAAATAAAGACTTAAACTTTCACATGGGTTGAGTAA-TATTGGAGGAA--TTACAGCCAATGT-----A-AACATAAA--------CATAAATGAAATGCAAAGTTTATATTTTGAATGGGATTCTTTCTGCACATAACGACGTCTaaatacagtaaataaagacttaaactttcacatgggttgagtaatattggaggaattacagccaatgtaaacataaacataaatgaaatgcaaagtttatattttgaatgggattctttctgcacataacgacgtcttgaacaagaggtcaccggtcttcct
gi|9 : gaccagtcactttttcgcctatatacttcaactgaaattctataattctggtgttctgtcacaagtttaaaaacgtttccacacataaagcacaagttaattcatgcaggagacctatttagcagtctttctgtgtctctgtaatgccatcatcataatctcgttttttcactctatccaaaaagtcatgaaaatactggtggccgagtttcattcaagttgtctctatcgtcaaatacCTTTTTCGCCTATATATTTCAACTGAAATTCTATAATTTT---GGGATTCTGTCATAAGTTTAAAAACGTTGCCACACATATAGCACAAGTTAATCCATGCAGGAGACCTTT-TAAGCAGTC--TTTCTGTTTCTCTGTATTGCC------A-T--CATA-AT------------AATCTCG--T---TTT------TTCGTT-----ATATGCA----------TTCGTCCCTTCACTCT-ATCCAAACTGTCATGAAAATG-CTGGTGGCTGAGTTTCAT-TCAAGTTGTCTCTATAATCCTACAATCTGACAAAAGAG-CTCTG-AAAA--ATACAAAA---ATATCCTGTACCTTAGTAAATAAAGACTTAAACTTTCACATGGGGTGCATAA-TATTGAAtgaacaagaggtcaccggtcttcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CAAATGTTATAGAAAGGGAAACTAATTTCCCTTTACGGTGT