lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111 2222 1111111 22222 555555555555555555555 11 1111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 1111111
lowQualScore : 22 1 2 333 0 2 333 2 8 777777 7777777 444444 0 2 2 7 99999999 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 44 555555555 3 1 4 99 55 0 1111 4 4 4444444 1 00000 5 222222222222222222222 6 6 00 77 2222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555 333333 44 3333333 6666 4 4 3
lowQualScore : .. . . ... . . ... . . ...... ....... ...... . . . . ........ ........................................................................................................... .. ......... . . . .. .. . .... . . ....... . ..... . ..................... . . .. .. .... .............................................................................................................................. ... ...... .. ....... .... . . .
lowQualScore : 33 3 1 777 3 0 555 1 0 999999 2222222 666666 1 5 5 3 22222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 66 111111111 3 5 0 44 55 8 1111 0 4 4444444 1 77777 6 111111111111111111111 7 7 00 99 1111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444 111111 22 1111111 5555 5 5 9
consensus : GGCATGCCGAAC-GTTGCAATATTCAATA--TTTT-TAT---ATTT-GTATTCAATCTTCA-T----ACA-------TTT---C--TATTGTA-TAT-TGTTNC------AT-------------------NTGT-G--TTC----------TATA---TT-TG-------CTC---AT--------------------------TT------------GT--AT---A-----TTGTTTC-ATTTGTATTCTATATT-T-CTCATTT--GTATTTAATAACTTN--TGA-TTTGTATTGTATA-------ATTTGTATTT--ATATTCTNTATTTNTATT--ATA--------T-TTAT-ATT-GTATCTCTTA--C----ATTAGTATTGTAAA-NTCNCTTC---CATTT---T--------C--GAA--------A--------A----TATAC--AATACAAAT-GT----AT--A-------------AA--------------T-----------AT---ATAA------AAAT--A-------TTGAATAT---TGCAACGTTTGGCATGCCAT
Reference ( gi|2 ) : GGCATTCCGAAC-GTTGCAATATTCAATA--TTTT-TAT---ATTT-GTATTCAATATTCA-A----ACA-------TTT---C--TATTGTA-TAT-TATTAC------AT-------------------ATAT-G--TTC----------TATA---TC-TG-------CTC---AT--------------------------TT------------GT--AT---A-----TTGTTTC-ATTTGTATTCTATATT-T-CTCATTT--GTATTTAATAATTCG--TGA-TTTATATTGCATA-------ATTTGTATTA--ACATTCTATACTTATATT--ATA--------T-TTAT-ATC-GTATCTCTTA--C----ATTAGTATTGTAAA-ATCCCTTCAG-CATTT---T--------T--GAA--------A--------A----TATAC--AATACAAAT-GT----AT--A-------------GA--------------T-----------AT---ATAA------AAAT--A-------TTGAATAC---TACAACGTTTAGCATGTCATA
gi|3 : GGCATGCCAAAC-GTTGCAATGTTCAAT----------T---ATTT----TTCAATCTTCA-T----ACA-------TTT---C--TATTG--------------------T-------------------ATA--G--TGT----------TA-------------------C---AT--------------------------TT------------GT--AT------------TCTCTATTTGCATTTTATATT-T----ATTTATGTATTCA----TTTG--TAAATCTATATTTCCCA--------TTTGTA-------ATTCTTGATTTCTATT--GTA--------T-ATCTCATCTGTATCTAATAACCGTTGATTTGTATTGTATA-ATTCTTTTTGTTACGT---T--------T--GAAATGAAGTGA--------A----TTTAC--AATACTAAT-GCA---AG--A-------------GA--------------TACA--------AT---ATAA------ACAT--A-------TAGCATAT---TA
gi|7 : atGGCATGTCAAGC-ATTGCAGTATTCAATA--TTTTATAT---ATCT-GCATTCAATCTTTA-T----ACA-------TTT---T--TATTGTA-TAG-TGCTGC------AT-------------------TTGT-A--TTC----------CATA---TT-TG-------CTC---AT--------------------------TT------------GT--ATTTGATAT--TTGTTTT-ATTTATATTATACATTGT-TTCATTT--GTATTataaaaaatatacaatacaaaattaacag
gi|1 : tGGCATGCAAAAC-GTTTCAATATTCAAC---TTTT-T------TTT--------ATCTTCA-T----ACA-------TTT---C--TATTGTA-TGTGTATTTT------AT-------------------ATTT-G--CTC-------------A---TT-T---------TC---AT--------------------------TT-------------C--AT---A-----T--TTTT-ATTTG-ATTctctat
gi|10 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtttcaaatactttttttttctattgcattttgtttcctttcgattctatatcgttcaactgtatttaataatttttcatttatattgtatattgtttcatttgtattctatgtctctcatttgtacttaataactgttgatttgtattgtacaatttctatttatattctatatttatattgtatctcttacattagtattgtaaataaactttattttgattgtaaacaGGCATGCCAAAG-GTTGCAGCATTCAA-A--TTTT-CAT---ATTT-CTATTTAATATTCA-T----ACA-------TTT---C--TATTGTA-TAT-TGTTAC------AT-------------------TTTT-A--TTC----------TAAA---TC-TG-------CCC---AT--------------------------TT------------GTAAAT---AATTTTTTTTTTT-ATTTAAATTGTATatag
gi|11 : tGGCGTGCCAAAC-GTTGCAGTATTCAATA--TTTT-TAT---ATTT-GTATTCAATCTTCA-T----ACA-------T
gi|20 : atctcttacattagtaatgcaaatgtttattaacgatcttaatgaagtgaatttacacgacttGGCATGACGGAC-GTTGCAATATTCAATATTTTTT-TTT---ATTT-GTATTCAATATTCA-T----ACat
gi|12 : tGACATGCCAAAC-ATTGCAATATTCAATA--TTGT-TATATAATTT-GCATTCAGCCTTCA-T----ACA-------TTT---C--TATCGAA-TAT-TGTTTC------AT-------------------GT-T-GA-TTA----------CATA---TT-T--------TTCATTAT--------------------------TT------------GA--AT---A-----ATATTTT-GTT
gi|6 : tGGTATT--GAAC-ATTGCAATATTTAACA--T
gi|18 : cGGCATATCGAAC-GTTGCAATATTCA-----------AT---ATTT-GTTTTCAATCTTCA-G----ACA-------TTG---C--CATTttgtacttgtattcaatcgtcatttttatagcatattattacatttctattcaatctttactaatttgttttttaattactcttgatttatatcgtatattgtttcgtttatattcaatatttgttcatttgtatttaataac
gi|16 : tGGCATGTCAAAT-GTTGCAATATTCAATG--CGTC-AAC---ATTT-GTATTCATTCTTCA-A----GCA--------TT---C--AATTGTA-TAT-TGTtgctcaattgtat
gi|9 : cGCATACCGAAC-GTCGAAATATTCGATA--TTTA-TAT---ATTT-GTATTAAATATTTA-T----ACA-------TTT---C--TATTGTA-TAT-
gi|15 : tatattctatattaatagatatagtatattgtacctcttacattagtattgtaaattcacttctttagatcgggaaaaaacagctGCATGCCAAAC-TTTGCAATATC--AT---TTTT-TAT---ATTT-GTATTAAATCTTCA-A----ACC-------TTT---C--TATTGTA-TAC-TGTTAC------AT-------------------
gi|13 : tataGCATGTCAAAC-TTTGCAATATTCAATA--TTTA-TAC---ATTTAATA-TCAGTATTCA-T----ACA-------TTT---C--TTTTGCATTAT-TAGTGC------A
gi|22 : attGCATGCTAAAC-AATGCAATATTCAATA--CATT-TAT---ATTT-GTATTCAATTTTagcatttttgtt
gi|4 : attCATTGCAAACAGTGGCAATTATCAATT--GTTT-TAT---ATTT-GTATTCGCTCTTCATAGATTACA-------TTT---G--AATTTTA-TAT-TGGCTC------AT-------------------TTGT-A--TTTTAAAAAAATATATA---TT-TA-------CAC---GTGTA-----------------------TT------------GT--AT---A-----TTGTT--------TATTGTATATT-T-CTCATTT--GTATTTAATAATGTA--TGC-TCTATATTGTTTC-------AGTTGT-TTCCTATATTTCTCATTTGTATTTAATACGTTTTGGT-TTAT-ATT-GTTTCAGTTG--C----ATT
gi|21 : tggcatgccaaaCCGAAC-GTTGCAATAGTCAATA--TGTG-TTT---ATTT-GTATTCAATCTTCA-ct
gi|5 : ttgcctgCAAAC-GTTGCAATATTAAACA--TGAT-CAT---ATTT-ACATTCAATTTTCA-T----ACA-------TAT---C--TATTGTA-TAT-TTTTAC------AT-------------------TTGT-A--TTC----------TATA---TTATG-------CTC---GTTTGTTTTTGATTTGATTTGATTTATATT------------GT--AT---A-----TTGTTTC-ATTTGAATTCTACATT-T-TTCATTA--GTATTTGATAACTGT--TGA-TTTGTATTGTATA-------ATTTTTATTT--ATATTCTATA--TCTATT--ATt
gi|6 : tggAAT-ATTGCAATGTTCAATA--CCTT--GT---ACTT-GTATTCAATCGTCA----------------TTT---T--TATAGCA-TAT-TATTAC------ATTTCTATTCAATCTTTACTAATTT-G--TTT----------TTTA---AT-TA-------CTCTTGAT--------------------------TTATATC-------GT--AT---A-----TTGTTTC-GTTTATATTCAATATT-TGTTCATTT--GTATTTAATAAt
gi|19 : catgttaAAC-GTTGCAACATTCAATA--TTTT-TAT---Ac
gi|1 : tttatgtaggtaaaaataaaatactgtctttatagatcTATTCTATA--TTTG-CAT---ATTT-GT--------TTCA-A----ATACTTTTTTTTT---C--TATTGCA-TTT-TGTTTCCTTTCGATTCT----------------ATATCG--TTCAAC-------TGTA---TT-TAATAATTTTTC---AT--------------------------TTATATT-------GT--AT---A-----TTGTTTC-ATTTGTATTCTATGTC-T-CTCATTT--GTACTTAATAACTGT--TGA-TTTGTATTGTACA-------ATTTCTATTT--ATATTC-----------T--ATA--------T-TTAT-ATT-GTATCTCTTA--C----ATTAGTATTGTAAATAAACTTT-----ATTTTGAT--------T--GTA--------A--------A----CAAATCAAATAAAAAT-AT----G---A-------------AA--------------TGA---------AA---ATGAGC----AAAT--A-------TAAAATACACATACAA
gi|4 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacattttATA--TATT-TAC---ACGT-GTATTGTATATT----------G-------TTT-------ATTGTA-TAT-TTCT-C------AT-------------------TTGT-A--TTT----------AATAATGTA-TG-------CTC----------------------------------------------T--AT---A-----TTGTTTC-AGTTGTTTCCTATATT-T-CTCATTT--GTATTTAATACGTTT--TGG-TTTATATTGTTTC-------AGTTGCATTtagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|8 : tggcatgccaaacattgcaaacagtggcaattatcaattgttttatatttgtattcgctcttcatagattacatttgaattttatattggctcatttgtattttaaaaaaatCAATATTCA-AT---AAA-------TTTGTAT--TATTGTA-TAT-TGTTAT------AT-------------------TTGT-A--TTC----------TGTA---TT-TG-------CTC---AT--------------------------TTTTTATCAATATTAT--AT---A-----TTGTTTC-ATTTGTATTCTGTATT-T-CTCA-CT--GTATTTAATGATTCT--TGA-TTCATATTGTATct
gi|7 : atagcatgccaaacgttgTCA-A----GCA-------TTG---CAGTATTCAA-TAT-T-TTAT------AT-------------------ATCT-GCATTC----------AATC---TT-TA-------TAC---AT--------------------------TTTTATT-------GT--AT---A-----GTGCTGC-ATTTGTATTCCATATT-TGCTCATTT--GTATTTGAT-ATTTGTTTTA-TTTATATTATACATTGTTTCATTTGTATT
gi|17 : tggcatgTAAATT-T-TTCATTT--GGATTTAATAACT-G--TTG-TTTGTATTGTATA-------ATTTGTATTT--ATATTCTctctat
gi|14 : --TGA-TTTGTATTGTATA-------ATATTTATTT--ATATTCTTTATTTATAT-----A--------T-TAAT-ATT-GTATATCTTA--C----ATAAGTATTTTGAA-TTCACTTttgttcttgta
gi|3 : t-TTTGTATTGTATA-------TTTTTTATTA--ATATGCTATA-----------TG--------T-TTAT-ATT-GTATCTCTTG--C----ATTAGTATTGTAAA-TTCACTT----CATTT---CAAACGTAAC--AAA--------A--------AGAATTATAC--AATACAAAT-aatt
gi|9 : atggcatgccaaacgttgcaatgttcaattatttttcaatcttcatacatttctattgtatagtgttacatttgtattctctatttgcattttatatttatttatgtattcatttgtaaatctatatttcccatttgtaattcttgatttctattgtatatctcatctgtatctaataaccgttg--ATATTCTATATTAATAG---ATA--------TAGTAT-ATT-GTACCTCTTA--C----ATTAGTATTGTAAA-TTCACTTC-----TTTAGAT--------CGGGAA--------AAAACAGCTA----TATAC--AATAGAAAT-GT----AT--A-------------AA--------------TATTTAATACAAAT---ATAT------AAAT--A-------TCGAATAT---TTCGACGTTCGGTATGattaacag
gi|11 : tATCTCTTA--C----ATTAGTAATGCAAATGTTTATTAAC-GATCT---TAA------T--GAAGTG-----A--------A----TTTAC--ACGACTTAT-GT----ATGAA-------------GA--------------TTGAATACAA--AT---ATAA------AAAT--A-------TTGAATAC---TGCAACGTTTGGCACGCCATc
gi|12 : TCAA-CAT-----------------GAA--------ACA------A----TATTC--GATAGAAAT-GT----AT--G-------------AAGGCTGAATGCAAATT-----------AT---ATAA------CAAT--A-------TTGAATAT---TGCAATGTTTGGCATGTCA
gi|19 : AA--------A--------A-----ATAA--AATAC---T-GTCTTTAT--A-------------GA--------------T-----------CT---ATAA------AAAT--A-------TTGAATGT---TGCAACGTTttacatatttttcattatttgaataatattttgtt
gi|8 : tttatgtaggtA--------A--------A----TACAG--AATACAAAT-AT----AA--C-------------AA--------------T-----------AT---ACAATAATACAAATTTA-------TTGAATAT---TGCAACGTTTGGCATGCTAT
gi|13 : A--------A--------A----TGTATG-AATACTGAT-AT-----T--A-------------AA--------------T-----------GT---ATAA------A--T--A-------TTGAATAT---TGCAAAGTTTGACATGgctcattttttatcaatattatatattgtttcatttgtattctgtatttctcactgtatttaatgattcttgattcatattgtat
gi|10 : attg--------A--------A----TATAC--AATAGAAAT-GT----AT--G-------------AA--------------T-----------ATTAAATAG------AAAT--ATGAAAATTTGAATGC---TGCAACCTTTGGCATGCCActtttgcattattagtgcaagcatttttgtt
gi|20 : --------A--------A----TATTG--AATACAAAT-A---------A-------------AA---------------------------------AA------AAAT--A-------TTGAATAT---TGCAACGTCCGTCATGCCAgttacatttttattctaaatctgcccatttgtaaataatttttttttttatttaaattgtat
gi|3 : ----TATAC--AATAGAAAT-GT----AT--G-------------AA--------------G-----------AT---TGAA------AAAT--AA------TTGAACAT---TGCAACGTTTGGCATGCCATcatac
gi|7 : ----TATAC--AATAAAAAT-GT----AT--AAAGATTGAATGCAGA--------------T-----------AT---ATAA------AA-T--A-------TTGAATAC---TGCAATGCTTGACATGCCAgtgttacatttgtattctctatttgcattttatatttatttatgtattcatttgtaaatctatatttcccatttgtaattcttgatttctattgtatatctcatctgtatctaataaccgttgatttgtattgtataattctttttgttacgtttgaaatgaagtgaatttacaatactaatgcaagagatacaatataaacatatagcatattaataaaaaatatacaatacaaaattaacag
gi|22 : AAATTGA----AT--A-------------CA--------------A-----------AT---ATAA------ATGT--A-------TTGAATAT---TGCATTGTTTAGCATGgtgctgcatttgtattccatatttgctcatttgtatttgatatttgttttatttatattatacattgtttcatttgtattctctat
Alignments
lowQualScore : 11111111111 1111111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111111 111111111 1111 3333333333333333333333333333333333333333333 2222222222 111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 2 00000000000 999999999999 2 333 0 2 55555 2 4 1 1 66 4444444444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 4444444444 3 888888888 444 66 0000 888 66 4 2222222222222222222222222222222222222222222 1 888 1111111111 000 88 1 77 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 2 0
lowQualScore : . ........... ............ . ... . . ..... . . . . .. .......... .............................................................................................. . .......... . ......... ... .. .... ... .. . ........................................... . ... .......... ... .. . .. ............................................................................................... . . . .
lowQualScore : 6 00000000000 333333333333 0 555 3 0 33333 7 8 0 8 77 6666666666 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 6666666666 3 222222222 999 66 6666 888 11 4 9999999999999999999999999999999999999999999 7 888 9999999999 000 77 0 99 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 7 7 4 2
consensus : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACATTTGTA-TTC----------TAT-------------------------ATTTG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TGT-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTTGTATTTAATAACTNTTGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------ATTTGTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT-TCAC--TT--C--CATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----ATAG-A-------T-----------A----T---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
Reference ( family-2733 ) : GGCATGCCGAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTNCATNTGTG-TTC----------TAT-------------------------ATTTG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TGT-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTTGTATTTAATAACTTNTGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------ATTTNTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAN-TCNC--TT--C--CATT--T---T--C--G-AA---A--------ATATAC---AATACAAATGT----ATAA-A-------T-----------A----T---AT-AAAAAT-ATTGAATATTGCAACGTTTGGCATGCCAT
gi|1 : CCAAACGCTGCAA-----------TATTCAAAACATGTA--TCTT-TATAT---CTTTGT-TCAATCTTCA-----TACATTT-TAATGTA-TATTGTTACATTTTTA-TTC----------TAT-------------------------ATTTG-----------CAT---AT------------TT-----GTTTCAAAT---A-----C-------TTT-TTTTTTCTATTGCATTTTGTTTCCTTTCGATTCTATATC-G-TTCAACTGTATTTAATAATTTTTCATTTATATTGTATA------TTGTTTCATT--T-GTATTC-TATGTCTCTCATTTGTAC-TTAATAACTGTTGA--------TTTGTATTGTACAATTTCTATTTATATTCTATATTTATATT---GTA----TCTC--TT--A--CATTAGTA--T--T--G-TA---A--------ATAAACTTTATTTTGATTGTAA--ACAA-A-------TC----------A----A---AT-AAAAAT-ATGAAAT
gi|1 : ctTTCAAA-----TA--CTTT-TTT-T---TTCTAT-TGCATTTTGT-----TTCCTTTCGATTCTA-TATCGTT-CAACTGTA-TTT----------AAT-------------------------AATTT-----------TTC---AT------------TTATATTGT-----AT---A-----T-------TGT-TT----------CA-TTTGT---------ATTCTATGTC-T-CTCATTTGTACTTAATAACTGTTGATTTGTATTGTACA----ATTTCT---ATT--T-ATATTC--------------------T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT-AAAC--TT-----TATT--T---T-----G-AT---T--------GTAAAC---AAATCAAA--T----AAAA-A-------T-----------A----TGAAAT-GAAAATGAGCAAATATgaaaatgagcaaatataaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|1 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtGGCATGCAAAACGTTTCAA-----------TATTCAA------C---TTTT-T---T---TT--------ATCTTCA-----TACATTTCTATTGT-----------ATGTGTA-TTT----------TAT-------------------------ATTTG-----------CTC---AT------------TT-----------------------T-------CAT-TT----------CA-----T---------ATTTT-TATT----TGATTTGTaaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|10 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtttcaaatactttttttttctattgcattttgtttcctttcgattctatatcgttcaactgtatttaataatttttcatttatattgtatattgtttcatttgtattctatgtctctcatttgtacttaataactgttgatttgtattgtacaatttctatttatattctatatttatattgtatctcttacattagtattgtaaataaactttattttgattgtaaGGCATGCCAAAGGTTGCAG-----------CATTCAA-------A--TTTT-CATAT---TTCTAT-TTAATATTCA-----TACATTTCTATTGTA-TATTGTTACATTTTTA-TTC----------TAA-------------------------ATCTG-----------CCC---AT------------TT-----GTAA---AT---AATTTTT-------TTT-TT----------TA-TTTAA---------ATTGTATatag
gi|11 : t---ATCTCT----------TACATTAGTAAT---GCAAATGTTTA--TTAAC--GATC--T---TAAT--G-AAGTGA--------ATTTAC---ACGACTTATGT----ATGA-AGATTGAAT-----------ACAAAT---AT-AAAAAT-ATTGAATACTGCAACGTTTGGCACGCCAT
gi|11 : GGCGTGCCAAACGTTGCAG-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACAT
gi|12 : atctcttacattagtaatgcaaatgtttattaacgatcttaatgaagtgaatttacacgacttGACATGCCAAACATTGCAA-----------TATTCAA------TA--TTGT-TATATAATTTGCAT-TCAGCCTTCA-----TACATTTCTATCGAA-TATTGTTTCATGT-TGATTA----------CAT-------------------------ATTT------------TTCATTAT------------TT-----GA-----AT---A-----A-------TAT-TT----------TG-TTat
gi|13 : tGCATGTCAAACTTTGCAA-----------TATTCAA------TA--TTTA-TACAT---TTA-ATATCAGTATTCA-----TACATTTCTTTTGCATTATTAGTGCA
gi|14 : attTGATTTGTATTGTATA----ATATTT---ATT--T-ATATTC-TTT-------ATTTA----T--AT--------A--------TTAATATTGT---ATATCT----------TACATAAGTATT---TTGAAT-TCAC--TT--agcatttttgtt
gi|15 : tGCATGCCAAACTTTGCAA-----------TATC--A------T---TTTT-TATAT---TTGTAT-TAAATCTTCA-----AACCTTTCTATTGTA-TACTGTTACATaatt
gi|16 : tataGGCATGTCAAATGTTGCAA-----------TATTCAA------TG--CGTC-AACAT---TTGTAT-TCATTCTTCA-----AGCA-TTCAATTGTA-TATTGT
gi|17 : cTAAATT-T-TTCATTTGGATTTAATAACTGTTG-TTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TTT-------GTTCTTGT-
gi|18 : GGCATATCGAACGTTGCAA-----------TATTCA-----------------ATAT---TTGTTT-TCAATCTTCA-----GACATTGCCATTa
gi|19 : t-AA---A--------A-ATAA---AATAC---TGTCTTTATAG-A-------T-----------C----T---AT-AAAAAT-ATTGAATGTTGCAACGTTtgctcaattgtat
gi|2 : tttatgtaggtGGCATTCCGAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATATTCA-----AACATTTCTATTGTA-TATTATTACATATATG-TTC----------TAT-------------------------ATCTG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TGT-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTTGTATTTAATAATTCGTGATTTATATTGCATA----ATTTGT---ATT--A-ACATTC-TAT-------ACTTATAT-T--AT--------A--------TTTATATCGT---ATCTCT----------TACATTAGTATT---GTAAAA-TCCC--TT--CAGCATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----ATAG-A-------T-----------A----T---AT-AAAAAT-ATTGAATACTACAACGTTTAGCATGTCAT
gi|20 : GGCATGACGGACGTTGCAA-----------TATTCAA------TATTTTTT-TTTAT---TTGTAT-TCAATATTCA-----TACa
gi|21 : tGCCTGCCGAACGTTGCAA-----------TAGTCAA------TA--TGTG-TTTAT---TTGTAT-TCAATCTTCA-----T
gi|22 : ttGCATGCTAAACAATGCAA-----------TATTCAA------TA--CATT-TATAT---TTGTAT-TCAATTTT
gi|3 : attGGCATGCCAAACGTTGCAA-----------TGTTCAA------T----------TAT---TT---T-TCAATCTTCA-----TACATTTCTATTGTA-TAGTGTTACATTTGTA-TTC----------TCT-------------------------ATTTG-------------C---AT------------TT------T-----AT---A-----TTTATTTATGTATT----------CA-TTTGTA--------AATCTATATT-T-CCCATTTG-------TAATTCTTGATTTCTATTGTATATCTCATCTGT---ATC--TAATAACCGTTG-------ATTTGTAT-T--GT--------A----------TA-ATTCT---TTTTGT----------TACGTTTGAAATGAAGTGAAT-TTACAATA--C--TAAT------------GCAA---G--------AGATAC---AATATAAACAT----ATAGCA-------T-----------A----TTA-ATAAAAAAT-ATACAATA
gi|4 : atGGCATGCCAAACATTGCAAACAGTGGCAATTAT-CAA------TT--GTTT-TATAT---TTGTAT-TCGCTCTTCATAGATTACATTTGAATTTTA-TATTGGCTCATTTGTA-TTTTAAAAAAATATAT-------------------------ATTTA-----------CAC---GTGTA---------TT-----GT-----AT---A-----T-------TGT-T------------------T---------ATTGTATATT-T-CTCATTTGTATTTAATAATGTATGCTCTATATTGTTTC----AGTTGT----TTCCT-ATATTT-CTC-------ATTTGTAT-TTAAT--------ACGTTTTGGTTTATATTGT---TTCAGT----------TGCATTcaaaattaacag
gi|5 : tTGGCAAACGTTGCAA-----------TATTAAA------CA--TGAT-CATAT---TTACAT-TCAATTTTCA-----TACATATCTATTGTA-TATTTTTACATTTGTA-TTC----------TATATTATGCTCGTTTGTTTTTGATTTGATTTGA----------TTT---ATA-----------TT-----GT-----AT---A-----T-------TGT-TT----------CA-TTTGA---------ATTCTACATT-T-TTCATTAGTATTTGATAACTGTTGATTTGTATTGTATA----ATTTTT---ATT--T-ATATTC-TAT-------A--TCTAT-T--AT--------ct
gi|6 : CATGTTAAATATTGCAA-----------TGTTCAA------TA--CCTT--GTAC---TTGTAT-TCAATCGTCA-----T----TTTTATAGCA-TATTATTACATTTCTA-TTC----------AATCTTTACTA-----------------ATTTGTTTTTTAATTACTCTTGAT------------TTATATCGT-----AT---A-----T-------TGT-TT----------CG-TTTAT---------ATTCAATATT-TGTTCATTTGTATTTAATAACt
gi|7 : GGCATGTCAAGCATTGCAG-----------TATTCAA------TA--TTTTATATAT---CTGCAT-TCAATCTTTA-----TACATTTTTATTGTA-TAGTGCTGCATTTGTA-TTC----------CAT-------------------------ATTTG-----------CTC---AT------------TT-----GT-----ATTTGATAT--T-------TGT-TT----------TA-TTTAT---------ATTATACATTGT-TTCATTTGTATT
gi|8 : tGCATGCCAAACGTTGCAA-----------TATTCAA------TA--------A-AT---TTGTAT------------------------TATTGTA-TATTGTTATATTTGTA-TTC----------TGT-------------------------ATTTG-----------CTC---ATTTTTTATCAATATT-----AT-----AT---A-----T-------TGT-TT----------CA-TTTGT---------ATTCTGTATT-T-CTCA-CTGTATTTAATGATTCTTGATTCATATTGTATctctat
gi|9 : ata--T-ATATTC-TAT-------ATTAATAGAT--AT--------A--------GT-ATATTGT---ACCTCT----------TACATTAGTATT---GTAAAT-TCAC--TT--C----TT--TAGAT--CGGG-AA---AAAACAGCTATATAC---AATAGAAATGT----ATAA-A-------TATTTAATACAAA----T---AT-ATAAAT-ATCGAATATTTCGACGTTCGGTATGC
Alignments
lowQualScore : 11111111111 1111111111 11111111 11111111111 111 444444444444444444444444444444444444444444444 1111111111 111111111 22222222222222222222 1111 333333333333333333333333333333333333333333333 2222222222 111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 00000000000 999999999999 2 333 0 2 55555 2 4 2 4444444444 22222222 3 55555555555 111 666666666666666666666666666666666666666666666 3 3 4444444444 3 0 888888888 0 888 99999999999999999999 2 1 4 0000 888 66 4 444444444444444444444444444444444444444444444 1 888 1111111111 000 77 4 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5 4 0 0 0
lowQualScore : ........... ............ . ... . . ..... . . . .......... ........ . ........... ... ............................................. . . .......... . . ......... . ... .................... . . . .... ... .. . ............................................. . ... .......... ... .. . ...................................................................................... . . . . . .
lowQualScore : 00000000000 333333333333 0 555 3 0 33333 5 6 9 6666666666 11111111 3 88888888888 777 000000000000000000000000000000000000000000000 3 3 6666666666 3 4 222222222 5 555 55555555555555555555 7 0 4 6666 888 11 4 888888888888888888888888888888888888888888888 7 888 9999999999 000 99 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 0 2 7 7
consensus : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------AT--TTGTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C--NATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
Reference ( family-2733 ) : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------AT--TTGTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C--CATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
gi|1 : CCAAACGCTGCAA-----------TATTCAAAACATGTA--TCTT-TATAT---CTTTGT-TCAATCTTCA-----TACATTT-TAATGTA-TATTGTTACAT-TTTTATTC----------TAT--------ATT-TG-----------CAT---AT------------TT-----GTTTCAAAT---A-----C-------TT-T-TTTTTTCTATTGCATTTTGTTTCCTTTCGATTCTATATC-G-TTCAACT--------------------GTATTTAATAATTTT-TCATTTATATTGTATA------TTGTTTCATT--T-GTATTC-TATGTCTCTCAT--TTGTAC-TTAATAACTGTTGA--------TTTGTATTGTACAATTTCTATTTATATTCTATATTTATATT---GTA-----TCTCTT--A--CATTAGTA--T--T--G-TA---A--------ATAAACTTTATTTTGATTGTAA--AC--AA-ATC----------AA---AT-AAAAAT-ATGAAAT
gi|1 : ctTTCAAA-----TA--CTTT-TTT-T---TTCTAT-TGCATTTTGT-----TTCCTTTCGATTCTA-TATCGTT-CAA-CTGTATTT----------AAT--------AAT-TT-----------TTC---AT------------TTATATTGT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATGTC-T-CTCATTT--------------------GTACTTAATAACTGT-TGATTTGTATTGTACA----ATTTCT---ATT--T-ATATTC----------------------T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--AAACTT-----TATT--TTGAT--T--G-TA---A--------ACA------AAT-CAAA--T----AA--AA-AT-----------ATGAAAT-GAAAATGAGCAAATATgaaaatgagcaaatataaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|1 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtGGCATGCAAAACGTTTCAA-----------TATTCAA------C---TTTT-T---T---TT--------ATCTTCA-----TACATTTCTATTGTA-TG-----------TGTATTT----------TAT--------ATT-TG-----------CTC---AT------------TT-----------------------T-------CA-T-TT----------CA-----T---------ATTTT-TATT----TGATTT--------------------GTaaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|10 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtttcaaatactttttttttctattgcattttgtttcctttcgattctatatcgttcaactgtatttaataatttttcatttatattgtatattgtttcatttgtattctatgtctctcatttgtacttaataactgttgatttgtattgtacaatttctatttatattctatatttatattgtatctcttacattagtattgtaaataaactttattttgattgtaaGGCATGCCAAAGGTTGCAG-----------CATTCAA-------A--TTTT-CATAT---TTCTAT-TTAATATTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTTTATTC----------TAA--------ATC-TG-----------CCC---AT------------TT-----GTAA---AT---AATTTTT-------TT-T-TT----------TA-TTTAA---------ATTGTATatag
gi|11 : t---ATCTCT----------TACATTAGTAAT---GCAAATGTTTA-TTAAC--GATC--T---TAAT--G-AAGTGA--------ATTTAC---ACGACTTATGT----ATGAAG-ATTGAATACAA--AT---AT-AAAAAT-ATTGAATACTGCAACGTTTGGCACGCCAT
gi|11 : GGCGTGCCAAACGTTGCAG-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACAT
gi|12 : atctcttacattagtaatgcaaatgtttattaacgatcttaatgaagtgaatttacacgacttGACATGCCAAACATTGCAA-----------TATTCAA------TA--TTGT-TATATAATTTGCAT-TCAGCCTTCA-----TACATTTCTATCGAA-TATTGTTTCATGTTG-ATTA----------CAT--------ATT-T------------TTCATTAT------------TT-----GA-----AT---A-----A-------TA-T-TT----------TG-TTat
gi|13 : tGCATGTCAAACTTTGCAA-----------TATTCAA------TA--TTTA-TACAT---TTA-ATATCAGTATTCA-----TACATTTCTTTTGCATTATTAGTGCA
gi|14 : attT-TGATTTGTATTGTATA----ATATTT---ATT--T-ATATTC-TTT-------AT--TTA----T--AT--------A--------TTAATATTGT---ATATCT----------TACATAAGTATT---TTGAAT--TCACTT--agcatttttgtt
gi|15 : GCATGCCAAACTTTGCAA-----------TATC--A------T---TTTT-TATAT---TTGTAT-TAAATCTTCA-----AACCTTTCTATTGTA-TACTGTTACAT-aatt
gi|16 : tataGGCATGTCAAATGTTGCAA-----------TATTCAA------TG--CGTC-AACAT---TTGTAT-TCATTCTTCA-----AGCA-TTCAATTGTA-TATTGT
gi|17 : cTAAATT-T-TTCATTT--------------------GGATTTAATAACTGT-TG-TTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TTT-------GTTCTTGTA
gi|18 : GGCATATCGAACGTTGCAA-----------TATTCA-----------------ATAT---TTGTTT-TCAATCTTCA-----GACATTGCCAT-------TTGCT-CAA-TTGTAT
gi|19 : t-AA---A--------A-ATAA---AATAC---TGTCTTTAT--AG-AT-----------CT---AT-AAAAAT-ATTGAATGTTGCAACGTT
gi|2 : tttatgtaggtGGCATTCCGAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATATTCA-----AACATTTCTATTGTA-TATTATTACAT-ATATGTTC----------TAT--------ATC-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAATTCG-TGATTTATATTGCATA----ATTTGT---ATT--A-ACATTC-TAT-------AC--TTATAT-T--AT--------A--------TTTATATCGT---ATCTCT----------TACATTAGTATT---GTAAAA--TCCCTT--CAGCATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATTGAATACTACAACGTTTAGCATGTCAT
gi|20 : GGCATGACGGACGTTGCAA-----------TATTCAA------TATTTTTT-TTTAT---TTGTAT-TCAATATTCA-----TACa
gi|21 : tGCCTGCCGAACGTTGCAA-----------TAGTCAA------TA--TGTG-TTTAT---TTGTAT-TCAATCTTCA-----T
gi|22 : ttGCATGCTAAACAATGCAA-----------TATTCAA------TA--CATT-TATAT---TTGTAT-TCAATTTT
gi|3 : attGGCATGCCAAACGTTGCAA-----------TGTTCAA------T----------TAT---TT---T-TCAATCTTCA-----TACATTTCTATTGTA-TAGTGTTACAT-TTGTATTC----------TCT--------ATT-TG-------------C---AT------------TT------T-----AT---A-----TTTATTTATG-TATT----------CA-TTTGTA--------AATCTATATT-T-CCCATTT--------------------G-------TAATTCT-TGATTTCTATTGTATATCTCATCTGT---ATC--TAATAACCGTTG-------AT--TTGTAT-T--GT--------A----------TA-ATTCT---TTTTGT----------TACGTTTGAAATGAAGTGAAT--TTA-----C--AATA--C---TAAT--GCAA---G--------AGATAC---AATATAAACAT----AT--AGCAT-----------ATTA-ATAAAAAAT-ATACAATA
gi|4 : atGGCATGCCAAACATTGCAAACAGTGGCAATTAT-CAA------TT--GTTT-TATAT---TTGTAT-TCGCTCTTCATAGATTACATTTGAATTTTA-TATTGGCTCAT-TTGTATTTTAAAAAAATATAT--------ATT-TA-----------CAC---GTGTA---------TT-----GT-----AT---A-----T-------TG-T-T------------------T---------ATTGTATATT-T-CTCATTT--------------------GTATTTAATAA-TGTATGCTCTATATTGTTTC----AGTTGT----TTCCT-ATATTT-CTC-------AT--TTGTAT-TTAAT--------ACGTTTTGGTTTATATTGT---TTCAGT----------TGCATTcaaaattaacag
gi|5 : tTGGCAAACGTTGCAA-----------TATTAAA------CA--TGAT-CATAT---TTACAT-TCAATTTTCA-----TACATATCTATTGTA-TATTTTTACAT-TTGTATTC----------TAT--------ATTATG-----------CTC---GT------------TT-----GTTTTTGAT---------T-------TGAT-TT----------GA-TTTAT---------ATTGTATATTGT-TTCATTTGAATTCTACATTTTTCATTAGTATTTGATAACTGT-TGATTTGTATTGTATA----ATTTTT---ATT--T-ATATTC-TAT-------AT--C--TAT-T--AT--------ct
gi|6 : CATGTTAAATATTGCAA-----------TGTTCAA------TA--CCTT--GTAC---TTGTAT-TCAATCGTCA-----T----TTTTATAGCA-TATTATTACAT-TTCTATTC----------AATCTTTACTAATT-TGTTTTTTAATTACTCTTGAT------------TTATATCGT-----AT---A-----T-------TG-T-TT----------CG-TTTAT---------ATTCAATATT-TGTTCATTT--------------------GTATTTAATAACt
gi|7 : GGCATGTCAAGCATTGCAG-----------TATTCAA------TA--TTTTATATAT---CTGCAT-TCAATCTTTA-----TACATTTTTATTGTA-TAGTGCTGCAT-TTGTATTC----------CAT--------ATT-TG-----------CTC---AT------------TT-----GT-----ATTTGATAT--T-------TG-T-TT----------TA-TTTAT---------ATTATACATTGT-TTCATTT--------------------GTATT
gi|8 : tGCATGCCAAACGTTGCAA-----------TATTCAA------TA--------A-AT---TTGTAT-T-----------------------ATTGTA-TATTGTTATAT-TTGTATTC----------TGT--------ATT-TG-----------CTC---ATTTTTTATCAATATT-----AT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTGTATT-T-CTCA-CT--------------------GTATTTAATGATTCT-TGATTCATATTGTATctctat
gi|9 : ata--T-ATATTC-TAT-------AT--TAATAGAT--AT--------A--------GT-ATATTGT---ACCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C----TT--TAGAT--CGGG-AA---AAAACAGCTATATAC---AATAGAAATGT----AT--AA-ATATTTAATACAAAT---AT-ATAAAT-ATCGAATATTTCGACGTTCGGTATGC
Alignments
lowQualScore : 11111111111 1111111111 11111111 11111111111 111 444444444444444444444444444444444444444444444 1111111111 111111111 22222222222222222222 1111 333333333333333333333333333333333333333333333 2222222222 111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 00000000000 999999999999 2 333 0 2 55555 2 4 2 4444444444 22222222 3 55555555555 111 666666666666666666666666666666666666666666666 3 3 4444444444 3 0 888888888 0 888 99999999999999999999 2 1 4 0000 888 66 4 444444444444444444444444444444444444444444444 1 888 1111111111 000 77 4 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 5 4 0 0 0
lowQualScore : ........... ............ . ... . . ..... . . . .......... ........ . ........... ... ............................................. . . .......... . . ......... . ... .................... . . . .... ... .. . ............................................. . ... .......... ... .. . ...................................................................................... . . . . . .
lowQualScore : 00000000000 333333333333 0 555 3 0 33333 5 6 9 6666666666 11111111 3 88888888888 777 000000000000000000000000000000000000000000000 3 3 6666666666 3 4 222222222 5 555 55555555555555555555 7 0 4 6666 888 11 4 888888888888888888888888888888888888888888888 7 888 9999999999 000 99 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 7 0 2 7 7
consensus : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------AT--TTGTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C--NATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
Reference ( family-2733 ) : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------AT--TTGTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C--NATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
gi|1 : CCAAACGCTGCAA-----------TATTCAAAACATGTA--TCTT-TATAT---CTTTGT-TCAATCTTCA-----TACATTT-TAATGTA-TATTGTTACAT-TTTTATTC----------TAT--------ATT-TG-----------CAT---AT------------TT-----GTTTCAAAT---A-----C-------TT-T-TTTTTTCTATTGCATTTTGTTTCCTTTCGATTCTATATC-G-TTCAACT--------------------GTATTTAATAATTTT-TCATTTATATTGTATA------TTGTTTCATT--T-GTATTC-TATGTCTCTCAT--TTGTAC-TTAATAACTGTTGA--------TTTGTATTGTACAATTTCTATTTATATTCTATATTTATATT---GTA-----TCTCTT--A--CATTAGTA--T--T--G-TA---A--------ATAAACTTTATTTTGATTGTAA--AC--AA-ATC----------AA---AT-AAAAAT-ATGAAAT
gi|1 : ctTTCAAA-----TA--CTTT-TTT-T---TTCTAT-TGCATTTTGT-----TTCCTTTCGATTCTA-TATCGTT-CAA-CTGTATTT----------AAT--------AAT-TT-----------TTC---AT------------TTATATTGT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATGTC-T-CTCATTT--------------------GTACTTAATAACTGT-TGATTTGTATTGTACA----ATTTCT---ATT--T-ATATTC----------------------T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--AAACTT-----TATT--TTGAT--T--G-TA---A--------ACA------AAT-CAAA--T----AA--AA-AT-----------ATGAAAT-GAAAATGAGCAAATATgaaaatgagcaaatataaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|1 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtGGCATGCAAAACGTTTCAA-----------TATTCAA------C---TTTT-T---T---TT--------ATCTTCA-----TACATTTCTATTGTA-TG-----------TGTATTT----------TAT--------ATT-TG-----------CTC---AT------------TT-----------------------T-------CA-T-TT----------CA-----T---------ATTTT-TATT----TGATTT--------------------GTaaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|10 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtttcaaatactttttttttctattgcattttgtttcctttcgattctatatcgttcaactgtatttaataatttttcatttatattgtatattgtttcatttgtattctatgtctctcatttgtacttaataactgttgatttgtattgtacaatttctatttatattctatatttatattgtatctcttacattagtattgtaaataaactttattttgattgtaaGGCATGCCAAAGGTTGCAG-----------CATTCAA-------A--TTTT-CATAT---TTCTAT-TTAATATTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTTTATTC----------TAA--------ATC-TG-----------CCC---AT------------TT-----GTAA---AT---AATTTTT-------TT-T-TT----------TA-TTTAA---------ATTGTATatag
gi|11 : t---ATCTCT----------TACATTAGTAAT---GCAAATGTTTA-TTAAC--GATC--T---TAAT--G-AAGTGA--------ATTTAC---ACGACTTATGT----ATGAAG-ATTGAATACAA--AT---AT-AAAAAT-ATTGAATACTGCAACGTTTGGCACGCCAT
gi|11 : GGCGTGCCAAACGTTGCAG-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACAT
gi|12 : atctcttacattagtaatgcaaatgtttattaacgatcttaatgaagtgaatttacacgacttGACATGCCAAACATTGCAA-----------TATTCAA------TA--TTGT-TATATAATTTGCAT-TCAGCCTTCA-----TACATTTCTATCGAA-TATTGTTTCATGTTG-ATTA----------CAT--------ATT-T------------TTCATTAT------------TT-----GA-----AT---A-----A-------TA-T-TT----------TG-TTat
gi|13 : tGCATGTCAAACTTTGCAA-----------TATTCAA------TA--TTTA-TACAT---TTA-ATATCAGTATTCA-----TACATTTCTTTTGCATTATTAGTGCA
gi|14 : attT-TGATTTGTATTGTATA----ATATTT---ATT--T-ATATTC-TTT-------AT--TTA----T--AT--------A--------TTAATATTGT---ATATCT----------TACATAAGTATT---TTGAAT--TCACTT-----AATT--agcatttttgtt
gi|15 : GCATGCCAAACTTTGCAA-----------TATC--A------T---TTTT-TATAT---TTGTAT-TAAATCTTCA-----AACCTTTCTATTGTA-TACTGTTACAT-
gi|16 : tataGGCATGTCAAATGTTGCAA-----------TATTCAA------TG--CGTC-AACAT---TTGTAT-TCATTCTTCA-----AGCA-TTCAATTGTA-TATTGT
gi|17 : cTAAATT-T-TTCATTT--------------------GGATTTAATAACTGT-TG-TTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TTT-------GTTCTTGTA
gi|18 : GGCATATCGAACGTTGCAA-----------TATTCA-----------------ATAT---TTGTTT-TCAATCTTCA-----GACATTGCCAT-------TTGCT-CAA-TTGTAT
gi|19 : t-AA---A--------A-ATAA---AATAC---TGTCTTTAT--AG-AT-----------CT---AT-AAAAAT-ATTGAATGTTGCAACGTT
gi|2 : tttatgtaggtGGCATTCCGAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATATTCA-----AACATTTCTATTGTA-TATTATTACAT-ATATGTTC----------TAT--------ATC-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAATTCG-TGATTTATATTGCATA----ATTTGT---ATT--A-ACATTC-TAT-------AC--TTATAT-T--AT--------A--------TTTATATCGT---ATCTCT----------TACATTAGTATT---GTAAAA--TCCCTT--CAGCATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATTGAATACTACAACGTTTAGCATGTCAT
gi|20 : GGCATGACGGACGTTGCAA-----------TATTCAA------TATTTTTT-TTTAT---TTGTAT-TCAATATTCA-----TACa
gi|21 : tGCCTGCCGAACGTTGCAA-----------TAGTCAA------TA--TGTG-TTTAT---TTGTAT-TCAATCTTCA-----T
gi|22 : ttGCATGCTAAACAATGCAA-----------TATTCAA------TA--CATT-TATAT---TTGTAT-TCAATTTT
gi|3 : attGGCATGCCAAACGTTGCAA-----------TGTTCAA------T----------TAT---TT---T-TCAATCTTCA-----TACATTTCTATTGTA-TAGTGTTACAT-TTGTATTC----------TCT--------ATT-TG-------------C---AT------------TT------T-----AT---A-----TTTATTTATG-TATT----------CA-TTTGTA--------AATCTATATT-T-CCCATTT--------------------G-------TAATTCT-TGATTTCTATTGTATATCTCATCTGT---ATC--TAATAACCGTTG-------AT--TTGTAT-T--GT--------A----------TA-ATTCT---TTTTGT----------TACGTTTGAAATGAAGTGAAT--TTA-----C--AATA--C---TAAT--GCAA---G--------AGATAC---AATATAAACAT----AT--AGCAT-----------ATTA-ATAAAAAAT-ATACAATA
gi|4 : atGGCATGCCAAACATTGCAAACAGTGGCAATTAT-CAA------TT--GTTT-TATAT---TTGTAT-TCGCTCTTCATAGATTACATTTGAATTTTA-TATTGGCTCAT-TTGTATTTTAAAAAAATATAT--------ATT-TA-----------CAC---GTGTA---------TT-----GT-----AT---A-----T-------TG-T-T------------------T---------ATTGTATATT-T-CTCATTT--------------------GTATTTAATAA-TGTATGCTCTATATTGTTTC----AGTTGT----TTCCT-ATATTT-CTC-------AT--TTGTAT-TTAAT--------ACGTTTTGGTTTATATTGT---TTCAGT----------TGCATTcaaaattaacag
gi|5 : tTGGCAAACGTTGCAA-----------TATTAAA------CA--TGAT-CATAT---TTACAT-TCAATTTTCA-----TACATATCTATTGTA-TATTTTTACAT-TTGTATTC----------TAT--------ATTATG-----------CTC---GT------------TT-----GTTTTTGAT---------T-------TGAT-TT----------GA-TTTAT---------ATTGTATATTGT-TTCATTTGAATTCTACATTTTTCATTAGTATTTGATAACTGT-TGATTTGTATTGTATA----ATTTTT---ATT--T-ATATTC-TAT-------AT--C--TAT-T--AT--------ct
gi|6 : CATGTTAAATATTGCAA-----------TGTTCAA------TA--CCTT--GTAC---TTGTAT-TCAATCGTCA-----T----TTTTATAGCA-TATTATTACAT-TTCTATTC----------AATCTTTACTAATT-TGTTTTTTAATTACTCTTGAT------------TTATATCGT-----AT---A-----T-------TG-T-TT----------CG-TTTAT---------ATTCAATATT-TGTTCATTT--------------------GTATTTAATAACt
gi|7 : GGCATGTCAAGCATTGCAG-----------TATTCAA------TA--TTTTATATAT---CTGCAT-TCAATCTTTA-----TACATTTTTATTGTA-TAGTGCTGCAT-TTGTATTC----------CAT--------ATT-TG-----------CTC---AT------------TT-----GT-----ATTTGATAT--T-------TG-T-TT----------TA-TTTAT---------ATTATACATTGT-TTCATTT--------------------GTATT
gi|8 : tGCATGCCAAACGTTGCAA-----------TATTCAA------TA--------A-AT---TTGTAT-T-----------------------ATTGTA-TATTGTTATAT-TTGTATTC----------TGT--------ATT-TG-----------CTC---ATTTTTTATCAATATT-----AT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTGTATT-T-CTCA-CT--------------------GTATTTAATGATTCT-TGATTCATATTGTATctctat
gi|9 : ata--T-ATATTC-TAT-------AT--TAATAGAT--AT--------A--------GT-ATATTGT---ACCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C----TT--TAGAT--CGGG-AA---AAAACAGCTATATAC---AATAGAAATGT----AT--AA-ATATTTAATACAAAT---AT-ATAAAT-ATCGAATATTTCGACGTTCGGTATGC
blockSeqs : ACAGTGGCAAT TATTTT A AAT A TAGAT T A G TAAAAAAATA CTTTACTA A TTTTTTAATTA ATT TTTTTATCAATATTATATAT A A . . A GT GAATTCTACATTTTTCATTA C G A TCTC . CC A CTCATTTGTATTTAATACGTTTTGGT T . . GAA GT C CTTTAGATCGGGAAAAAACAGCTATATACAATAGAAATGTATAAATATTTAATACAAAT A G C
blockSeqs : . ATACT . . . . . T . . . . . TTG TTGTAAATAATTTTT . . . . . TG . C G . . . . . TATATTAATAGATATAG A . . . . C AACGATCTTAATGAAGTGAATTTACACGACTTATGTATGAAGATTGAATACAAAT . . T
blockSeqs : . TATT . . . . . G . . . . . . TTTATATTTATTTA . . . . . GT . T C . . . . . TATACTTATATTATAT T . . . . C CAATACTAATGCAAGAGATACAATATAAACATATAGCATATTA . . T
blockSeqs : . TATT . . . . . A . . . . . . TTGTATTTGATATT . . . . . T . T C . . . . . GTTGATTTGTATTGTA T . . . . C CAGCATTTTTGAAAATATACAATACAAATGTATAGATAT . . T
blockSeqs : . TATT . . . . . A . . . . . . TTATATTGTATAT . . . . . T . C G . . . . . TTTATTTATATAT T . . . . . TATTTTGATTGTAAACAAATCAAATAAAAATATGAA . . A
blockSeqs : . TGCG . . . . . A . . . . . . TTATATCGTATAT . . . . . T . C G . . . . . TATAT . . . . . . . . C
blockSeqs : . TATT . . . . . T . . . . . . TTGTTTTTGATT . . . . . T . T C . . . . . . .
blockSeqs : . TATG . . . . . A . . . . . . GTATTGTATAT . . . . . T . . . . .
blockSeqs : . TACA . . . . . A . . . . . . TTGAATAA . . . . . T .
blockSeqs : . TTGT . . . . . G . . . . . . TTGTATAT . . . . . . .
blockSeqs : . CATG . . . . . A . . . . . . TTT . . . .
blockSeqs : . TACC . . . . . . .
blockSeqs : . TATT . . . . . . .
blockSeqs : . CTT . . . . . .
blockSeqs : . ATT . . . . .
blockSeqs : . TTT . . . .
blockSeqs : . TA . . . .
blockSeqs : . T . . . .
blockSeqs : . . . .
blockSeqCons : TATT******** TTGTATTGTATAT******************************** ********** ********* *** TNTATTTGTATTAT******************************* *** **********
originalCons : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---AT------------TT-----GT-----AT---A-----T-------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNT-------AT--TTGTAT-T--AT--------A--------TTTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C--NATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
finalCons : GGCATGCCAAACGTTGCAA-----------TATTCAATATT--------TT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---ATTTGTATTGTATAT--------------------------------TG-T-TT----------CA-TTTGT---------ATTCTATATT-T-CTCATTT--------------------GTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTCTNTATTTGTATTAT-------------------------------TTATATTGT---ATCTCT----------TACATTAGTATT---GTAAAT--TCACTT--C--NATT--T---T--T--G-AA---A--------ATATAC---AATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
Alignments
lowQualScore : 11111111111 1111111111 11111111 11111111111111111 66666666666666666666666666666666 1111 33333333333333333333333 111 1111111 55555555555555555555555555555555555 1111 6666666666666666
lowQualScore : 00000000000 999999999999 2 333 0 2 55555 2 4 2 4444444444 22222222 3 88888888888888888 3 66666666666666666666666666666666 2 3 3 3 66 4 4 2 1 4 0000 888 66 4 4 11 77777777777777777777777 5 77 000 0000000 66666666666666666666666666666666666 5 3 1 4444 99 6 5555555555555555 6 6 2 0 0 0
lowQualScore : ........... ............ . ... . . ..... . . . .......... ........ . ................. . ................................ . . . . .. . . . . . .... ... .. . . .. ....................... . .. ... ....... ................................... . . . .... .. . ................ . . . . . .
lowQualScore : 00000000000 333333333333 0 555 3 0 33333 5 6 9 6666666666 11111111 3 22222222222222222 3 88888888888888888888888888888888 3 3 3 3 00 0 0 7 0 4 6666 888 11 4 4 88 77777777777777777777777 0 99 000 4444444 00000000000000000000000000000000000 7 5 7 2222 22 7 2222222222222222 7 7 2 2 7 7
consensus : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---A-TTT-------G---------------------T--ATTGTATA-T-TGT-TTCATTTGT-ATTCTATATT-T-CTCATTTGTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNTAT--TTGTAT--T------------AT-TTATATT--GTATCTCTTACATTAGTATT---GTAAAT--TCACTT--C--NATTT---TAAT--G-AA---A--------ATATACAATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
Reference ( family-2733 ) : GGCATGCCAAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTGTATTC----------TAT--------ATT-TG-----------CTC---A-TTT-------G---------------------T--ATTGTATA-T-TGT-TTCATTTGT-ATTCTATATT-T-CTCATTTGTATTTAATAACTNT-TGATTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TNTAT--TTGTAT--T------------AT-TTATATT--GTATCTCTTACATTAGTATT---GTAAAT--TCACTT--C--NATTT---T--T--G-AA---A--------ATATACAATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATCGAATATTGCAACGTTCGGCACGCCAT
gi|1 : CCAAACGCTGCAA-----------TATTCAAAACATGTA--TCTT-TATAT---CTTTGT-TCAATCTTCA-----TACATTT-TAATGTA-TATTGTTACAT-TTTTATTC----------TAT--------ATT-TG-----------CAT---A-TTT-------GTTTCAAATACTTTTTTTTTC-T--ATTGCATT-T-TGT-TTCCTTTCG-ATTCTATATC-G-TTCAACTGTATTTAATAATTTT-TCATTTATATTGTATA------TTGTTTCATT--T-GTATTC-TATGT--C--TCT--C------------AT-TTGTACTTAATAACTGTTG-ATTTGTATT---GTACA-----ATTT--C--TATTT---
gi|1 : ctTTCAAA-----TA--CTTT-TTT-T---TTCTAT-TGCATTTTGT-----TTCCTTTCGATTCTA-TATCGTT-CAA-CTGTATTT----------AAT--------AAT-TT-----------TTC---A-TTT-------A---------------------T--ATTGTATA-T-TGT-TTCATTTGT-ATTCTATGTC-T-CTCATTTGTACTTAATAACTGT-TGATTTGTATTGTACA----ATTTCT---ATT--T-ATATTC-TA-------------T------------AT-TTATATT--GTATCTCTTACATTAGTATT---GTAAAT--AAACTT-----TATTTTGAT--T--G-TA---A--------ACA---AAT-CAAA--T----AA--AA-AT-----------ATGAAAT-GAAAATGAGCAAATATatattctatatttatattgtatctcttacattagtattgtaaataaactttattttgattgtaaacaaatcaaataaaaatatgaaatgaaaatgagcaaatataaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|1 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtGGCATGCAAAACGTTTCAA-----------TATTCAA------C---TTTT-T---T---TT--------ATCTTCA-----TACATTTCTATTGTA-TG-----------TGTATTT----------TAT--------ATT-TG-----------CTC---A-TTT-------T---------------------C--ATTTCATA-T---T-TTTATTTG--ATTaaaatacacatacaatagaaatgtatgaagataaaaaaaagttgaatattgaaacgttttgcatgccatag
gi|10 : ctccaaacgctgcaatattcaaaacatgtatctttatatctttgttcaatcttcatacattttaatgtatattgttacatttttattctatatttgcatatttgtttcaaatactttttttttctattgcattttgtttcctttcgattctatatcgttcaactgtatttaataatttttcatttatattgtatattgtttcatttgtattctatgtctctcatttgtacttaataactgttgatttgtattgtacaatttctatttatattctatatttatattgtatctcttacattagtattgtaaataaactttattttgattgtaaacaGGCATGCCAAAGGTTGCAG-----------CATTCAA-------A--TTTT-CATAT---TTCTAT-TTAATATTCA-----TACATTTCTATTGTA-TATTGTTACAT-TTTTATTC----------TAA--------ATC-TG-----------CCC---A-TTT-------G---------------------TAAATAATTTT-T-TTT-TTTATTTAA-ATTGTATatag
gi|11 : tATCTCTTACATTAGTAAT---GCAAATGTTTA-TTAAC--GATCT---TAAT--G-AAGTGA--------ATTTACACGACTTATGT----ATGAAG-ATTGAATACAA--AT---AT-AAAAAT-ATTGAATACTGCAACGTTTGGCACGCCAT
gi|11 : GGCGTGCCAAACGTTGCAG-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATCTTCA-----TACAT
gi|12 : atctcttacattagtaatgcaaatgtttattaacgatcttaatgaagtgaatttacacgacttGACATGCCAAACATTGCAA-----------TATTCAA------TA--TTGT-TATATAATTTGCAT-TCAGCCTTCA-----TACATTTCTATCGAA-TATTGTTTCATGTTG-ATTA----------CAT--------ATT-T------------TTCATTA-TTT-------G---------------------A--ATAATATT-T-TGT-Tat
gi|13 : tGCATGTCAAACTTTGCAA-----------TATTCAA------TA--TTTA-TACAT---TTA-ATATCAGTATTCA-----TACATTTCTTTTGCATTATTAGTGCA
gi|14 : attT-TGATTTGTATTGTATA----ATATTT---ATT--T-ATATTC-TTTAT--TTATA---T------------AT-TAATATT--GTATATCTTACATAAGTATT---TTGAAT--TCACTT-----AATTagcatttttgtt
gi|15 : GCATGCCAAACTTTGCAA-----------TATC--A------T---TTTT-TATAT---TTGTAT-TAAATCTTCA-----AACCTTTCTATTGTA-TACTGTTACAT-
gi|16 : tataGGCATGTCAAATGTTGCAA-----------TATTCAA------TG--CGTC-AACAT---TTGTAT-TCATTCTTCA-----AGCA-TTCAATTGTA-TATTGT
gi|17 : cTAAATT-T-TTCATTTGGATTTAATAACTGT-TG-TTTGTATTGTATA----ATTTGT---ATT--T-ATATTC-TTTGTTCTTGTA
gi|18 : GGCATATCGAACGTTGCAA-----------TATTCA-----------------ATAT---TTGTTT-TCAATCTTCA-----GACATTGCCAT-------TTGCT-CAA-TTGTAT
gi|19 : t-AA---A--------A-ATAAAATAC---TGTCTTTAT--AG-AT-----------CT---AT-AAAAAT-ATTGAATGTTGCAACGTT
gi|2 : tttatgtaggtGGCATTCCGAACGTTGCAA-----------TATTCAA------TA--TTTT-TATAT---TTGTAT-TCAATATTCA-----AACATTTCTATTGTA-TATTATTACAT-ATATGTTC----------TAT--------ATC-TG-----------CTC---A-T-----------------------------------TTGTATA-T-TGT-TTCATTTGT-ATTCTATATT-T-CTCATTTGTATTTAATAATTCG-TGATTTATATTGCATA----ATTTGT---ATT--A-ACATTC-TATAC--TTATATTAT------------AT-TTATATC--GTATCTCTTACATTAGTATT---GTAAAA--TCCCTT--CAGCATTT---T--T--G-AA---A--------ATATACAATACAAATGT----AT--AG-AT-----------AT---AT-AAAAAT-ATTGAATACTACAACGTTTAGCATGTCAT
gi|20 : GGCATGACGGACGTTGCAA-----------TATTCAA------TATTTTTT-TTTAT---TTGTAT-TCAATATTCA-----TACa
gi|21 : tGCCTGCCGAACGTTGCAA-----------TAGTCAA------TA--TGTG-TTTAT---TTGTAT-TCAATCTTCA-----T
gi|22 : ttGCATGCTAAACAATGCAA-----------TATTCAA------TA--CATT-TATAT---TTGTAT-TCAATTTT
gi|3 : attGGCATGCCAAACGTTGCAA-----------TGTTCAA------T----------TAT---TT---T-TCAATCTTCA-----TACATTTCTATTGTA-TAGTGTTACAT-TTGTATTC----------TCT--------ATT-TG-------------C---ATTTT-------A---------------------T--ATT-TATT-TATGTATTCATTTGTAAATCTATATT-T-CCCATTTG-------TAATTCT-TGATTTCTATTGTATATCTCATCTGT---ATC--TAATAACCGTTGAT--TTGTAT--T------------GT-ATA-ATT--CTTTTTGTTACGTTTGAAATGAAGTGAAT--TTA-----C--AATAC---TAAT--GCAA---G--------AGATACAATATAAACAT----AT--AGCAT-----------ATTA-ATAAAAAAT-ATACAATA
gi|4 : atGGCATGCCAAACATTGCAAACAGTGGCAATTAT-CAA------TT--GTTT-TATAT---TTGTAT-TCGCTCTTCATAGATTACATTTGAATTTTA-TATTGGCTCAT-TTGTATTTTAAAAAAATATAT--------ATT-TA-------------C---A-CGT-------G---------------------T--ATTGTATA-T-TGT-T-------T-ATTGTATATT-T-CTCATTTGTATTTAATAA-TGTATGCTCTATATTGTTTC----AGTTGT----TTCCT-ATATTT-CTCAT--TTGTAT--TTAATACGTTTTGGT-TTATATT--GTTTCAGTTGCATTcaaaattaacag
gi|5 : tTGGCAAACGTTGCAA-----------TATTAAA------CA--TGAT-CATAT---TTACAT-TCAATTTTCA-----TACATATCTATTGTA-TATTTTTACAT-TTGTATTC----------TAT--------ATTATG-----------CTC---G-TTT-------GTTTTTGATTTGATTTGATTTAT--ATTGTATA-T-TGT-TTCATTTGA-ATTCTACATT-T-TTCATTAGTATTTGATAACTGT-TGATTTGTATTGTATA----ATTTTT---ATT--T-ATATTC-TATAT--C--TAT--T------------AT-Tct
gi|6 : CATGTTAAATATTGCAA-----------TGTTCAA------TA--CCTT--GTAC---TTGTAT-TCAATCGTCA-----T----TTTTATAGCA-TATTATTACAT-TTCTATTC----------AATCTTTACTAATT-TGTTTTTTAATTACTCTTGA-TTT-------A---------------------T--ATCGTATA-T-TGT-TTCGTTTAT-ATTCAATATT-TGTTCATTTGTATTTAATAAC
gi|7 : GGCATGTCAAGCATTGCAG-----------TATTCAA------TA--TTTTATATAT---CTGCAT-TCAATCTTTA-----TACATTTTTATTGTA-TAGTGCTGCAT-TTGTATTC----------CAT--------ATT-TG-----------CTC---A-TTT-------G---------------------T--ATTTGATATT-TGT-TTTATTTAT-ATTATACATTGT-TTCATTTGTATT
gi|8 : tGCATGCCAAACGTTGCAA-----------TATTCAA------TA--------A-AT---TTGTAT-T-----------------------ATTGTA-TATTGTTATAT-TTGTATTC----------TGT--------ATT-TG-----------CTC---A-TTTTTTATCAA---------------------T--ATTATATA-T-TGT-TTCATTTGT-ATTCTGTATT-T-CTCA-CTGTATTTAATGATTCT-TGATTCATATTGTATctctat
gi|9 : ata--T-ATATTC-TATAT--TAATAGA-T------------ATAGTATATT--GTACCTCTTACATTAGTATT---GTAAAT--TCACTT--C----TTTAGAT--CGGG-AA---AAAACAGCTATATACAATAGAAATGT----AT--AA-ATATTTAATACAAAT---AT-ATAAAT-ATCGAATATTTCGACGTTCGGTATGC