lowQualScore : 222
lowQualScore : 4 2 7 33 777 1
lowQualScore : . . . .. ... .
lowQualScore : 4 4 5 11 777 6
consensus : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CT-GGG-AATATTCCGAAGACCGGGAAATATTC
Reference ( gi|1 ) : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CT-GTT-AATATTCCGGAGACCGGGAAATATTC
gi|4 : ATTCAAGCCTCCGTAACATGTAAAGCGC-AA-AAAGA-CT-GTT-TATATTCCGGAGACCGGGA
gi|2 : aatgaATTCAAGCCTTCGTAACATGTAAAACGCAAA-AAAAA-CT-GTT-AATATTCCGGAGACAGGGA
gi|10 : aatgcATTGAAGCCTCCGTAACATGTAAAACGC-AA-AAGGA-CT-GTT-AATATTCCGGAG
gi|6 : atgcATTCAAGCCTCCATAACATGTAAAACGC-AA-AAAGA-CC-GGGAAATATTCTGAAAACCAGG
gi|7 : agcATTCAAGCCTCTGTAACATGTAAAACGC-AAGAAAGA-CT-GGGAAATATTCGGCAGAC
gi|15 : aatgcATTCAAGCCTCCGAAACATGTAAAACGC-AA-AAAGACCT-GGA-AATATTCC
gi|3 : ATTCAAGCATCCGTTATATGTAAAACGCAAA-AAAGATCG-GGA-AATATTCCAAAGACTTGGAA
gi|18 : ccATTCAAGCCTCCGCAACATGTAAAATGC-AA-AAAGA-
gi|19 : aatgtATTCAAGCCTCCGTAACATGTAAAAC
gi|16 : gtaaatgcATTGAAGCCTCCGTAACATATAAAACAC-AA-GAAGa
gi|20 : atgcATTCAAGCCTCCATAACATGTAAAATGC-gaaatat
gi|8 : aattcTTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CT-GTT-AATATTCCGGAGACCGG
gi|9 : TTCAAGCCTCCGTAACATGTAAAACGC-AA-AATAA-CTGGGG-AATATTCTAAAGACC
gi|5 : TTAAAGCCTCCGTAATGTGCTAAACGT-AA-AAAGG-CT-GGGAAACATTCCGAAGACTGGGAa
gi|11 : tgcgTTCAAGACT--GTATCATGTAAATTGC-AA-AAAGA-CT-GGGAAATACTACAAAGACTG
gi|13 : TCAAGCCTCTGTAACATGTAAAATGG-AA-TAAGATCG-GGA-AATATTCTGAAGACa
gi|12 : CTCTGTAACATGTAAAACTC-AA-AAAGA-CC-GGGAAATATTCCAAATAC
gi|12 : tCTCTGTAACATGTAAAACTC-AA-AAAGA-C--------------------CGGGAAATATTCttgaa
gi|17 : tGTAAAACGC-AA-AATGA-CC-GTT-AATCTTCCGGAGACCAAGAAAcaaatacttgaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTAAGACTGAAGTTAACATAACATGTAAAACACAAAGACAAGAAATATTC
Alignments
lowQualScore : 11
lowQualScore : 4 2 2 2 88
lowQualScore : . . . . ..
lowQualScore : 4 4 4 5 99
consensus : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CC-GGGAAATATTCCGGAGACCGGGAAATATTC
Reference ( family-2642 ) : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CT-GGG-AATATTCCGAAGACCGGGAAATATTC
gi|1 : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CT-GTT-AATATTCCGGAGACCGGGAAATATTC
gi|10 : ATTGAAGCCTCCGTAACATGTAAAACGC-AA-AAGGA-CT-GTT-AATATTCCGGAG
gi|11 : atgcTTCAAGACT--GTATCATGTAAATTGC-AA-AAAGA-CT-GGGAAATACTACAAAGACTG
gi|12 : CTCTGTAACATGTAAAACTC-AA-AAAGA-CC-GGGAAATATTCCAAATACa
gi|13 : tTCAAGCCTCTGTAACATGTAAAATGG-AA-TAAGA-TC-GGGAAATATTCTGAAGACttgaa
gi|15 : ATTCAAGCCTCCGAAACATGTAAAACGC-AA-AAAGACCT-GGA-AATATTCC
gi|16 : ATTGAAGCCTCCGTAACATATAAAACAC-AA-GAA------GGA-AATAT
gi|17 : atgcGTAAAACGC-AA-AATGA-CC-GTT-AATCTTCCGGAGACCAAGAAA
gi|18 : ATTCAAGCCTCCGCAACATGTAAAATGC-AA-AAAGA-
gi|19 : aatgtATTCAAGCCTCCGTAACATGTAAAAC
gi|2 : gtaaatgcATTCAAGCCTTCGTAACATGTAAAACGCAAA-AAAAA-CT-GTT-AATATTCCGGAGACAGGGAa
gi|20 : aatgcATTCAAGCCTCCATAACATGTAAAATGC-
gi|3 : aattcATTCAAGCATCCGTTATATGTAAAACGCAAA-AAAGA-TC-GGGAAATATTCCAAAGACTTGGAA
gi|4 : ccATTCAAGCCTCCGTAACATGTAAAGCGC-AA-AAAGA-CT-GTT-TATATTCCGGAGACCGGGA
gi|5 : aatgaTTAAAGCCTCCGTAATGTGCTAAACGT-AA-AAAGG-CT-GGGAAACATTCCGAAGACTGGGA
gi|6 : tgcgATTCAAGCCTCCATAACATGTAAAACGC-AA-AAAGA-CC-GGGAAATATTCTGAAAACCAGG
gi|7 : agcATTCAAGCCTCTGTAACATGTAAAACGC-AAGAAAGA-CT-GGGAAATATTCGGCAGAC
gi|8 : aatgcTTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGA-CT-GTT-AATATTCCGGAGACCGG
gi|9 : TTCAAGCCTCCGTAACATGTAAAACGC-AA-AATAA-CTGGGG-AATATTCTAAAGACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTAAGACTGAAGTTAACATAACATGTAAAACACAAAGACAAGAAATATTC
Alignments
lowQualScore : 2 2 8
lowQualScore : . . .
lowQualScore : 2 4 9
consensus : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
Reference ( family-2642 ) : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
gi|1 : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACTGTT-AATATTCCGGAGACCGGGAAATATTC
gi|10 : ATTGAAGCCTCCGTAACATGTAAAACGC-AA-AAGGACTGTT-AATATTCCGGAG
gi|11 : atgcTTCAAGACT--GTATCATGTAAATTGC-AA-AAAGACTGGGAAATACTACAAAGACTG
gi|12 : CTCTGTAACATGTAAAACTC-AA-AAAGACCGGGAAATATTCCAAATACa
gi|13 : tTCAAGCCTCTGTAACATGTAAAATGG-AA-TAAGATCGGGAAATATTCTGAAGACttgaa
gi|15 : ATTCAAGCCTCCGAAACATGTAAAACGC-AA-AAAGACCTGGAAATATTCC
gi|16 : ATTGAAGCCTCCGTAACATATAAAACAC-AA-GAA-----GGAAATAT
gi|17 : atgcGTAAAACGC-AA-AATGACCGTT-AATCTTCCGGAGACCAAGAAA
gi|18 : ATTCAAGCCTCCGCAACATGTAAAATGC-AA-AAAGA
gi|19 : aatgtATTCAAGCCTCCGTAACATGTAAAAC
gi|2 : gtaaatgcATTCAAGCCTTCGTAACATGTAAAACGC-AA-AAAAAACTGTTAATATTCCGGAGACAGGGAa
gi|20 : aatgcATTCAAGCCTCCATAACATGTAAAATGC-
gi|3 : aattcATTCAAGCATCCGTTATATGTAAAACGCAAA-AAAGATCGGGAAATATTCCAAAGACTTGGAA
gi|4 : ccATTCAAGCCTCCGTAACATGTAAAGCGC-AA-AAAGACTGTT-TATATTCCGGAGACCGGGA
gi|5 : aatgaTTAAAGCCTCCGTAATGTGCTAAACGT-AA-AAAGGCTGGGAAACATTCCGAAGACTGGGA
gi|6 : tgcgATTCAAGCCTCCATAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCTGAAAACCAGG
gi|7 : agcATTCAAGCCTCTGTAACATGTAAAACGC-AAGAAAGACTGGGAAATATTCGGCAGAC
gi|8 : aatgcTTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACTGTT-AATATTCCGGAGACCGG
gi|9 : TTCAAGCCTCCGTAACATGTAAAACGC-AA-AATAACTGGGGAATATTCTAAAGACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTAAGACTGAAGTTAACATAACATGTAAAACACAAAGACAAGAAATATTC
Alignments
lowQualScore : 2 2 8
lowQualScore : . . .
lowQualScore : 2 4 9
consensus : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
Reference ( family-2642 ) : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
gi|1 : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACTGTT-AATATTCCGGAGACCGGGAAATATTC
gi|10 : ATTGAAGCCTCCGTAACATGTAAAACGC-AA-AAGGACTGTT-AATATTCCGGAG
gi|11 : atgcTTCAAGACT--GTATCATGTAAATTGC-AA-AAAGACTGGGAAATACTACAAAGACTG
gi|12 : CTCTGTAACATGTAAAACTC-AA-AAAGACCGGGAAATATTCCAAATACa
gi|13 : tTCAAGCCTCTGTAACATGTAAAATGG-AA-TAAGATCGGGAAATATTCTGAAGACttgaa
gi|15 : ATTCAAGCCTCCGAAACATGTAAAACGC-AA-AAAGACCTGGAAATATTCC
gi|16 : ATTGAAGCCTCCGTAACATATAAAACAC-AA-GAA-----GGAAATAT
gi|17 : atgcGTAAAACGC-AA-AATGACCGTT-AATCTTCCGGAGACCAAGAAA
gi|18 : ATTCAAGCCTCCGCAACATGTAAAATGC-AA-AAAGA
gi|19 : aatgtATTCAAGCCTCCGTAACATGTAAAAC
gi|2 : gtaaatgcATTCAAGCCTTCGTAACATGTAAAACGC-AA-AAAAAACTGTTAATATTCCGGAGACAGGGAa
gi|20 : aatgcATTCAAGCCTCCATAACATGTAAAATGC-
gi|3 : aattcATTCAAGCATCCGTTATATGTAAAACGCAAA-AAAGATCGGGAAATATTCCAAAGACTTGGAA
gi|4 : ccATTCAAGCCTCCGTAACATGTAAAGCGC-AA-AAAGACTGTT-TATATTCCGGAGACCGGGA
gi|5 : aatgaTTAAAGCCTCCGTAATGTGCTAAACGT-AA-AAAGGCTGGGAAACATTCCGAAGACTGGGA
gi|6 : tgcgATTCAAGCCTCCATAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCTGAAAACCAGG
gi|7 : agcATTCAAGCCTCTGTAACATGTAAAACGC-AAGAAAGACTGGGAAATATTCGGCAGAC
gi|8 : aatgcTTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACTGTT-AATATTCCGGAGACCGG
gi|9 : TTCAAGCCTCCGTAACATGTAAAACGC-AA-AATAACTGGGGAATATTCTAAAGACC
blockSeqs : A G A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . A
blockSeqs : . . G
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons :
originalCons : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
finalCons : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTAAGACTGAAGTTAACATAACATGTAAAACACAAAGACAAGAAATATTC
Alignments
lowQualScore : 2 2 8
lowQualScore : . . .
lowQualScore : 2 4 9
consensus : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
Reference ( family-2642 ) : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCCGGAGACCGGGAAATATTC
gi|1 : ATTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACTGTT-AATATTCCGGAGACCGGGAAATATTC
gi|10 : ATTGAAGCCTCCGTAACATGTAAAACGC-AA-AAGGACTGTT-AATATTCCGGAG
gi|11 : atgcTTCAAGACT--GTATCATGTAAATTGC-AA-AAAGACTGGGAAATACTACAAAGACTG
gi|12 : CTCTGTAACATGTAAAACTC-AA-AAAGACCGGGAAATATTCCAAATACa
gi|13 : tTCAAGCCTCTGTAACATGTAAAATGG-AA-TAAGATCGGGAAATATTCTGAAGACttgaa
gi|15 : ATTCAAGCCTCCGAAACATGTAAAACGC-AA-AAAGACCTGGAAATATTCC
gi|16 : ATTGAAGCCTCCGTAACATATAAAACAC-AA-GAA-----GGAAATAT
gi|17 : atgcGTAAAACGC-AA-AATGACCGTT-AATCTTCCGGAGACCAAGAAA
gi|18 : ATTCAAGCCTCCGCAACATGTAAAATGC-AA-AAAGA
gi|19 : aatgtATTCAAGCCTCCGTAACATGTAAAAC
gi|2 : gtaaatgcATTCAAGCCTTCGTAACATGTAAAACGC-AA-AAAAAACTGTTAATATTCCGGAGACAGGGAa
gi|20 : aatgcATTCAAGCCTCCATAACATGTAAAATGC-
gi|3 : aattcATTCAAGCATCCGTTATATGTAAAACGCAAA-AAAGATCGGGAAATATTCCAAAGACTTGGAA
gi|4 : ccATTCAAGCCTCCGTAACATGTAAAGCGC-AA-AAAGACTGTT-TATATTCCGGAGACCGGGA
gi|5 : aatgaTTAAAGCCTCCGTAATGTGCTAAACGT-AA-AAAGGCTGGGAAACATTCCGAAGACTGGGA
gi|6 : tgcgATTCAAGCCTCCATAACATGTAAAACGC-AA-AAAGACCGGGAAATATTCTGAAAACCAGG
gi|7 : agcATTCAAGCCTCTGTAACATGTAAAACGC-AAGAAAGACTGGGAAATATTCGGCAGAC
gi|8 : aatgcTTCAAGCCTCCGTAACATGTAAAACGC-AA-AAAGACTGTT-AATATTCCGGAGACCGG
gi|9 : TTCAAGCCTCCGTAACATGTAAAACGC-AA-AATAACTGGGGAATATTCTAAAGACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTAAGACTGAAGTTAACATAACATGTAAAACACAAAGACAAGAAATATTC