lowQualScore : 22222222222 11 1111111 1111 1111 1111111111111111
lowQualScore : 2 3 66666666666 2 2 7777 33 2 55 1 5 5 66 2 3333333 5 444 7777 2 2222 2 33 9999999999999999
lowQualScore : . . ........... . . .... .. . .. . . . .. . ....... . ... .... . .... . .. ................
lowQualScore : 6 1 55555555555 4 5 5555 44 5 88 5 7 5 66 7 7777777 2 777 9999 0 5555 7 77 7777777777777777
consensus : TTTATTTCCGTCTCATCATAAT-ATACAAACA---TACAATAAAATCAATGTACATACGCATG-AA-TA-T--A--GTA-TATT-ATGCCATTCATATTAGAATTATAAGAGACT-CCATA-T-T-----AAAANCA---ATT--ATCCTTA-C--A-T--GTACAAAT-------AN------CGTCCTTCAATG
Reference ( gi|12 ) : TTTATTTCCATCTCATCATAAT-ATACACACA---CACTATAAAATCAATGTACATACGCATG-AA-TA-T--A--GTA-TATT-TTGCCATTCATATCAGAATTATAGGAGACT-TCATA-T-T-----AAAATCA---ATA--ATCTTTA-T--A-T--GTACAAAT-------AC------CGTCCTTCAATG
gi|8 : TTCATTTCCATTGCATCATAATTATACGAACA---TACAATAAAATCAATGTACATACGCATG-AA-TA-T--A--GAAGTAT----GCCATTCAAATTTGAATTATAAGAGACT-CCATA-T-T-----AAAATTA---ATT--ATCTTTA-C--A-A--ATACAAAT-------AA------CGTCCTTTGGTG
gi|10 : tatatcTTTATTTCCATCTCATCATGTT-ATGTAAACA---TACAGTAAAAT----GTACAAACGCATG-AA--A-TGAA--ATA-AAT----GCCATTCATATAAGACATATAAGAGACT-CCATA-T-TTA---AAAAT-----ATT--ATCTTAA-C--A-C--GTACAGTT-------AT------GGTCCTTCAGT
gi|13 : tatatattcTTCATTTTCGTCTCATCATAAT-ATTCAAATA---TAAAATAAAAACAATGTACATACGAATT-AA-TA-T--A--ATG-TGTT-ATGGCATTCGTAATATAATTATAAGA------CACA-T-A-----ACCACCA---ATA--ATCATTA-A--A-T--GTACAAAT-------GA------AGTCCTTCAAag
gi|7 : tcTTTATTTCCGTCTCATCAAAAT-AAACAAAGA---TACAATAAAATCAATGTGCACACGCATG-AA--A-T--AATGTA-TATG-ATGACTTTTATTTTAAAA-TATAAAAGACT-CAATATT-T-----AAAAAAA---ACATTATCCTTA-C--ATT--GTTCAATT-------AT------AGTCTCTCAATGagga
gi|14 : cTTTATTTCCATCGCATTATAAT-ATACA-----------ATAAAATCAATGTACA----CACG-AA-T--T--G--ATA-AATT-TTGTC-----------------AGGA------CATA-T-G-----AAGATTA---ATT--ATCCTTA-C--A-TGCGCACAAAT-------AC------TGTCCTTga
gi|23 : atattcTTTTTTTCCATCTCATCACACT-ATACAAACA---TACAATAAAATCAACGTACATACACATG-Atttaaagagacgttaaaa
gi|19 : agtcTTATTCCC---TC-TCATAAT-ATACAAACA---TACAAAAAAATCAATATACAAACACATGAAA-TA-A--A--ATA-TATT-ACGCCATTCATATGAGAATTATt
gi|9 : taTTATTTCCATCTCCGTATAAT-AAACAAATATTTCA--ATAAAATCAATGTACATGCGCATG-TA-TA-A--A--GTA-TAGTATCG-TATTCATATTAAAATTATAAGAGACT-CCTTA-CAT-----GAA--CG---AGT--ATCTTCAGTGGA-C--GTAAAAAT-------G-----------CTTCAA
gi|3 : tattaTATTCCCGTCCCTTCATGTT-ATACAGACA---AACAATAAAATCAACGTACATACACGTG-AA-TA-T--A--GCA-TAGT-ATGACATTCATATTTGAATTTTAAGAGACC-TCATA-T-T-----AAAAGCA---ATT--ATCTTTT-A--A-A--GTGCAAAT-------AA------CGTTCTTCAATattaa
gi|5 : atattctgTATTTCCGTCTCAT---AAT-ATACAATCA---TACAATAAAATTATTGTAAATACGCATG-AA-TA-C--A--GTA-TAGT-ATGCTATTCTTATCAGAATTATAAGAGACT-CCATA-T-T-----AAAATCG---ACT--ATCCTAA-A--A-T--GTGCAAATAGTAAAAAA------CATCGTTCAATGcgactttgaatatggttatctattttaagacatatcacaaactcacatg
gi|6 : tacagatactgTTTTTGTTTCATCATTAT-ATACATACA-------ATAAAATCTTTTTACTTACGCATG-GA-TA-T--A--GTA-TATT-ATGTCATTCATAACATAATTAAAAGTGAAT-CCATA-T-TT----AAAATCA---A-A--ACCTTTA-C--A-T--GTACAAAT-------AC------CTTCCTTCAATGgacg
gi|21 : tatattccttcacCGTCTCATCCTAAT-ATTCGAACA---TACAATAAAACCAATAGATATACGCATG-AA-TA-A--A--GTA-TACT-aac
gi|1 : tgtTTTCATCATAAT-ATACCAACA---TATAATAAAATCAATGTACATATGCATG-AAATA-A--A--GTT-TATT-ATGCCATTCACATTAGAATTATAAGAGATT-CCATA-T-TAAAAAAAAAACA---ACATTATTCTTA-C--A-T--AGACAGTT-------AT------GATCCTTCAGTat
gi|11 : gTGCATATGCATA-AA-TA-G--A--TTA-TATT-ATATCATTCAACTTTGAATTAAATGATACT-TCATG-T-T-----AAAAGCA---ATT--ATATCTA-C--A-T--ATACAAGT-------ACATACAGCGTCCGTCAATtgactgatttatttatatttgttaaaacatattacatacataaacatgaccagttattgttaatcgtaccaaagtacatgacaacgtgatacagaatactaaaatagaatta
gi|2 : ACGAATA-AA-TA-T--A--GTA-TATT-ATGCCATTCATATTAGAATAGAAAGAGACT-ACTAA-T-C-----AAAAGCA---ATT--ATC-TTA-T--A-T--GTACAAAT-------AA------CGTCGGTCAATtgaaatataatattttataaaaaacatatcaccaactcacttaa
gi|15 : -AA-TG-A--A--ATA-TATT-ATGCCATTCGTATTAGAATTATAAGAGACT-TCATA-T-A-----AAAAACACACATT--ATTCTTA-C--A-T--ATACAGTT-------AT------GATCCATCAATGagacttaatatgtcaatttgttttaaagcatatcacatacaaaaaatatgaaaaatgttattgtttaacgttccatattccataatgtatcacatattgatatagaaatgtttaaaaatgtattgagcata
gi|4 : tga-AA-TAGT--A--GTA-TATT-ATGCCATTCGTATTATAATTATAAGAGACTCTCA-A-T-C-----AAAGTAA---AGT--GTGCTTA-C--G-T--GTAC-AAT-------AA------CG-ACTTCAATGgactt
gi|18 : aCATG-T-T-----AAAAGCA---GTT--ATCTTAA-C--A-T--GCACGAAT-------AA------CGTCCTTCAGTGgacttaaaatcacattctcacaaaaactttggccaattattattaatcgtaccatagtgtttctcaaaatgatatggaacatgtattaagcggaatata
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AAAATAAATAAATTTACTAACAATATTATTAAACATATTAACGTTCTAAAAAAAAAAACCTCATATAATTATCATAATTTAAAGCATCGAATTTCACAATGT
Unaligned ( gi|17 ): CACATACTCACAAAAAATATGACCAGTTATTGTTAATTGTACCACAGTATTTGTGATCGACAGAAATGCCTAAAAGTGAATTAAACGGAATGTA
Unaligned ( gi|20 ): CATATATAGTTATGATCCTTCAATGGACTAATTAATTTATATTTGTTAAAACATATCACATACATTAATATG
Unaligned ( gi|22 ): CACATAATCACATAAAATATGACCAGTTATGTTACTCGTACCATAGTGTTTCACATAATCACATAAAA
Unaligned ( gi|24 ): CTCAGCATGTTATGTGTACAGAAACAGTTACATGTA
Unaligned ( gi|25 ): AAGATTAATCATATCGTGTAGATGATTACGT
Alignments
lowQualScore : 11111
lowQualScore : 0 2 2 2 2 33 33 222 5 11111 1 777 444 2 33 777777 8888888 33
lowQualScore : . . . . . .. .. ... . ..... . ... ... . .. ...... ....... ..
lowQualScore : 4 9 9 2 4 33 22 888 0 66666 0 888 444 5 44 222222 1111111 88
consensus : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
Reference ( family-2610 ) : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
gi|1 : GTTTCATCATAAT-ATACCAACATA-TAATAAAATCAATGTACATATGCATG-AAATA-AA--GTTTATTATGCCATTCACATTAGAATTATAAGAGATT-C-CATA-TTAAAAAAAAAACAAC-ATTATTCT---TACA-T--AGACAG------TT-------ATGATCCTTCAGT
gi|10 : TTTATTTCCATCTCATCATGTT-ATGTAAACATA-CAGTAAAAT----GTACAAACGCATG-AA--A-TG--AAATAA-ATGCCATTCATATAAGACATATAAGAGACT-C-CATATTT-----AAAAAT----ATTATCTT---AACA-C--GTACAG------TT-------ATGGTCCTTCAGTtgactgatttatttatatttgttaaaacatattacatacataaacatgaccagttattgttaatcgtaccaaagtacatgacaacgtgatacagaatactaaaatagaatta
gi|11 : tatatattcTGCATATGCATA-AA-TA-GA--TTATATTATATCATTCAACTTTGAATTAAATGATACT-T-CATG-TT-----AAAAGCA---ATTATATC---TACA-T--ATACAAGTACATAC-------AGCGTCCGTCAATag
gi|12 : TTTATTTCCATCTCATCATAAT-ATACACACACA-CTATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTTTGCCATTCATATCAGAATTATAGGAGACT-T-CATA-TT-----AAAATCA---ATAATCTT---TATA-T--GTACAA------AT-------ACCGTCCTTCAATGtgaaatataatattttataaaaaacatatcaccaactcacttaa
gi|13 : TTCATTTTCGTCTCATCATAAT-ATTCAAATATA-AAATAAAAACAATGTACATACGAATT-AA-TA-TA--ATGTGTTATGGCATTCGTAATATAATTATAAGA-------CACA-TA-----ACCACCA---ATAATCAT---TAAA-T--GTACAA------AT-------GAAGTCCTTCAA
gi|14 : tcTTTATTTCCATCGCATTATAAT-ATAC---------AATAAAATCAATGTACA----CACG-AA-T--TG--ATAAATTTTGTCA--------GGA----------------CATA-TG-----AAGATTA---ATTATCCT---TACA-TGCGCACAA------AT-------ACTGTCCTTagga
gi|15 : atattc-AA-TG-AA--ATATATTATGCCATTCGTATTAGAATTATAAGAGACT-T-CATA-TA-----AAAAACACACATTATTCT---TACA-T--ATACAG------TT-------ATGATCCATCAATGtttaaagagacgttaaaa
gi|18 : tga-CATG-TT-----AAAAGCA---GTTATCTT---AACA-T--GCACGA------AT-------AACGTCCTTCAGTGgactt
gi|19 : TTATTCCC---TC-TCATAAT-ATACAAACATA-CAAAAAAATCAATATACAAACACATGAAA-TA-AA--ATATATTACGCCATTCATATGAGAATTATgaataaattgttttacttacagtttaagacatatcacatactcaca
gi|2 : taACGAATA-AA-TA-TA--GTATATTATGCCATTCATATTAGAATAGAAAGAGACTAC-TA-A-TC-----AAAAGCA---ATTAT-CT---TATA-T--GTACAA------AT-------AACGTCGGTCAAT
gi|21 : CGTCTCATCCTAAT-ATTCGAACATA-CAATAAAACCAATAGATATACGCATG-AA-TA-AA--GTATACTATagacttaatatgtcaatttgttttaaagcatatcacatacaaaaaatatgaaaaatgttattgtttaacgttccatattccataatgtatcacatattgatatagaaatgtttaaaaatgtattgagcata
gi|23 : tgtTTTTTTTCCATCTCATCACACT-ATACAAACATA-CAATAAAATCAACGTACATACACATG-A
gi|3 : agtcTATTCCCGTCCCTTCATGTT-ATACAGACAAA-CAATAAAATCAACGTACATACACGTG-AA-TA-TA--GCATAGTATGACATTCATATTTGAATTTTAAGAGACC-T-CATA-TT-----AAAAGCA---ATTATCTT---TTAA-A--GTGCAA------AT-------AACGTTCTTCAATt
gi|4 : atattctg-AA-TAGTA--GTATATTATGCCATTCGTATTATAATTATAAGAGACT-CTCA-A-TC-----AAAGTAA---AGTGTGCT---TACG-T--GTAC-A------AT-------AACG-ACTTCAATGcgactttgaatatggttatctattttaagacatatcacaaactcacatg
gi|5 : aTATTTCCGTCTCAT---AAT-ATACAATCATA-CAATAAAATTATTGTAAATACGCATG-AA-TA-CA--GTATAGTATGCTATTCTTATCAGAATTATAAGAGACT-C-CATA-TT-----AAAATCG---ACTATCCT---AAAA-T--GTGCAA------ATAGTAAAAAACATCGTTCAATGgacttaaaatcacattctcacaaaaactttggccaattattattaatcgtaccatagtgtttctcaaaatgatatggaacatgtattaagcggaatata
gi|6 : tacagatactgTTTTTGTTTCATCATTAT-ATACA----TA-CAATAAAATCTTTTTACTTACGCATG-GA-TA-TA--GTATATTATGTCATTCATAACATAATTAAAAGTGAAT-C-CATATTT-----AAAATCA---A-AACCTT---TACA-T--GTACAA------AT-------ACCTTCCTTCAATGgacg
gi|7 : tatattccttcacTTTATTTCCGTCTCATCAAAAT-AAACAAAGATA-CAATAAAATCAATGTGCACACGCATG-AA--A-TAATGTATATGATGACTTTTATTTTAAAA-TATAAAAGACT-C-AATA-TTTAAA-AAAAAC----ATTATCCT---TACATT--GTTCAA------TT-------ATAGTCTCTCAATGaac
gi|8 : cTTCATTTCCATTGCATCATAATTATACGAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--G-A-AGTATGCCATTCAAATTTGAATTATAAGAGACT-C-CATA-TT-----AAAATTA---ATTATCTT---TACA-A--ATACAA------AT-------AACGTCCTTTGGTGga
gi|9 : tatatcTTATTTCCATCTCCGTATAAT-AAACAAATATTTCAATAAAATCAATGTACATGCGCATG-TA-TA-AA--GTATAGTATCGTATTCATATTAAAATTATAAGAGACT-C-CTTA--C-----ATGAACG---AGTATCTTCAGTGGA-C--GTAAAA------AT-------G-----CTTCAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAATAAATTTACTAACAATATTATTAAACATATTAACGTTCTAAAAAAAAAAACCTCATATAATTATCATAATTTAAAGCATCGAATTTCACAATGT
Unaligned ( gi|17 ): CACATACTCACAAAAAATATGACCAGTTATTGTTAATTGTACCACAGTATTTGTGATCGACAGAAATGCCTAAAAGTGAATTAAACGGAATGTA
Unaligned ( gi|20 ): CATATATAGTTATGATCCTTCAATGGACTAATTAATTTATATTTGTTAAAACATATCACATACATTAATATG
Unaligned ( gi|22 ): CACATAATCACATAAAATATGACCAGTTATGTTACTCGTACCATAGTGTTTCACATAATCACATAAAA
Unaligned ( gi|24 ): CTCAGCATGTTATGTGTACAGAAACAGTTACATGTA
Unaligned ( gi|25 ): AAGATTAATCATATCGTGTAGATGATTACGT
Alignments
lowQualScore : 11111
lowQualScore : 0 2 2 2 2 33 33 222 5 11111 1 777 444 2 33 777777 8888888 33
lowQualScore : . . . . . .. .. ... . ..... . ... ... . .. ...... ....... ..
lowQualScore : 4 9 9 2 4 33 22 888 0 66666 0 888 444 5 44 222222 1111111 88
consensus : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
Reference ( family-2610 ) : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
gi|1 : GTTTCATCATAAT-ATACCAACATA-TAATAAAATCAATGTACATATGCATG-AAATA-AA--GTTTATTATGCCATTCACATTAGAATTATAAGAGATT-C-CATA-TTAAAAAAAAAACAAC-ATTATTCT---TACA-T--AGACAG------TT-------ATGATCCTTCAGT
gi|10 : TTTATTTCCATCTCATCATGTT-ATGTAAACATA-CAGTAAAAT----GTACAAACGCATG-AA--A-TG--AAATAA-ATGCCATTCATATAAGACATATAAGAGACT-C-CATATTT-----AAAAAT----ATTATCTT---AACA-C--GTACAG------TT-------ATGGTCCTTCAGTtgactgatttatttatatttgttaaaacatattacatacataaacatgaccagttattgttaatcgtaccaaagtacatgacaacgtgatacagaatactaaaatagaatta
gi|11 : tatatattcTGCATATGCATA-AA-TA-GA--TTATATTATATCATTCAACTTTGAATTAAATGATACT-T-CATG-TT-----AAAAGCA---ATTATATC---TACA-T--ATACAAGTACATAC-------AGCGTCCGTCAATag
gi|12 : TTTATTTCCATCTCATCATAAT-ATACACACACA-CTATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTTTGCCATTCATATCAGAATTATAGGAGACT-T-CATA-TT-----AAAATCA---ATAATCTT---TATA-T--GTACAA------AT-------ACCGTCCTTCAATGtgaaatataatattttataaaaaacatatcaccaactcacttaa
gi|13 : TTCATTTTCGTCTCATCATAAT-ATTCAAATATA-AAATAAAAACAATGTACATACGAATT-AA-TA-TA--ATGTGTTATGGCATTCGTAATATAATTATAAGA-------CACA-TA-----ACCACCA---ATAATCAT---TAAA-T--GTACAA------AT-------GAAGTCCTTCAA
gi|14 : tcTTTATTTCCATCGCATTATAAT-ATAC---------AATAAAATCAATGTACA----CACG-AA-T--TG--ATAAATTTTGTCA--------GGA----------------CATA-TG-----AAGATTA---ATTATCCT---TACA-TGCGCACAA------AT-------ACTGTCCTTagga
gi|15 : atattc-AA-TG-AA--ATATATTATGCCATTCGTATTAGAATTATAAGAGACT-T-CATA-TA-----AAAAACACACATTATTCT---TACA-T--ATACAG------TT-------ATGATCCATCAATGtttaaagagacgttaaaa
gi|18 : tga-CATG-TT-----AAAAGCA---GTTATCTT---AACA-T--GCACGA------AT-------AACGTCCTTCAGTGgactt
gi|19 : TTATTCCC---TC-TCATAAT-ATACAAACATA-CAAAAAAATCAATATACAAACACATGAAA-TA-AA--ATATATTACGCCATTCATATGAGAATTATgaataaattgttttacttacagtttaagacatatcacatactcaca
gi|2 : taACGAATA-AA-TA-TA--GTATATTATGCCATTCATATTAGAATAGAAAGAGACTAC-TA-A-TC-----AAAAGCA---ATTAT-CT---TATA-T--GTACAA------AT-------AACGTCGGTCAAT
gi|21 : CGTCTCATCCTAAT-ATTCGAACATA-CAATAAAACCAATAGATATACGCATG-AA-TA-AA--GTATACTATagacttaatatgtcaatttgttttaaagcatatcacatacaaaaaatatgaaaaatgttattgtttaacgttccatattccataatgtatcacatattgatatagaaatgtttaaaaatgtattgagcata
gi|23 : tgtTTTTTTTCCATCTCATCACACT-ATACAAACATA-CAATAAAATCAACGTACATACACATG-A
gi|3 : agtcTATTCCCGTCCCTTCATGTT-ATACAGACAAA-CAATAAAATCAACGTACATACACGTG-AA-TA-TA--GCATAGTATGACATTCATATTTGAATTTTAAGAGACC-T-CATA-TT-----AAAAGCA---ATTATCTT---TTAA-A--GTGCAA------AT-------AACGTTCTTCAATt
gi|4 : atattctg-AA-TAGTA--GTATATTATGCCATTCGTATTATAATTATAAGAGACT-CTCA-A-TC-----AAAGTAA---AGTGTGCT---TACG-T--GTAC-A------AT-------AACG-ACTTCAATGcgactttgaatatggttatctattttaagacatatcacaaactcacatg
gi|5 : aTATTTCCGTCTCAT---AAT-ATACAATCATA-CAATAAAATTATTGTAAATACGCATG-AA-TA-CA--GTATAGTATGCTATTCTTATCAGAATTATAAGAGACT-C-CATA-TT-----AAAATCG---ACTATCCT---AAAA-T--GTGCAA------ATAGTAAAAAACATCGTTCAATGgacttaaaatcacattctcacaaaaactttggccaattattattaatcgtaccatagtgtttctcaaaatgatatggaacatgtattaagcggaatata
gi|6 : tacagatactgTTTTTGTTTCATCATTAT-ATACA----TA-CAATAAAATCTTTTTACTTACGCATG-GA-TA-TA--GTATATTATGTCATTCATAACATAATTAAAAGTGAAT-C-CATATTT-----AAAATCA---A-AACCTT---TACA-T--GTACAA------AT-------ACCTTCCTTCAATGgacg
gi|7 : tatattccttcacTTTATTTCCGTCTCATCAAAAT-AAACAAAGATA-CAATAAAATCAATGTGCACACGCATG-AA--A-TAATGTATATGATGACTTTTATTTTAAAA-TATAAAAGACT-C-AATA-TTTAAA-AAAAAC----ATTATCCT---TACATT--GTTCAA------TT-------ATAGTCTCTCAATGaac
gi|8 : cTTCATTTCCATTGCATCATAATTATACGAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--G-A-AGTATGCCATTCAAATTTGAATTATAAGAGACT-C-CATA-TT-----AAAATTA---ATTATCTT---TACA-A--ATACAA------AT-------AACGTCCTTTGGTGga
gi|9 : tatatcTTATTTCCATCTCCGTATAAT-AAACAAATATTTCAATAAAATCAATGTACATGCGCATG-TA-TA-AA--GTATAGTATCGTATTCATATTAAAATTATAAGAGACT-C-CTTA--C-----ATGAACG---AGTATCTTCAGTGGA-C--GTAAAA------AT-------G-----CTTCAA
blockSeqs : T T A . GT AT AC T TAAA A CAC CAG T GC GTACAT AGTAAAA TG
blockSeqs : . . . . T . CT T . G . . . . . . GC
blockSeqs : . . . . G . C . . T . . . . . . CC
blockSeqs : . . . . T . T . . C . . . . . . AA
blockSeqs : . . . . T . T . . T . . . . . . CT
blockSeqs : . . . . T . T . . A . . . . . . TG
blockSeqs : . . . . A . T . . G . . . . . . AC
blockSeqs : . . . . A . C . . G . . . . . . AC
blockSeqs : . . . . T . C . . G . . . . . . AC
blockSeqs : . . . . A . C . . T . . . . . . AC
blockSeqs : . . . . T . C . . T . . . . . . AC
blockSeqs : . . . . C . C . . T . . . . . . CC
blockSeqs : . . . . T . . . . A . . . . . . TA
blockSeqs : . . T . . . . T . . . . . . AC
blockSeqs : . . T . . . A . . . . . . .
blockSeqs : . . A .
blockSeqs : .
blockSeqCons : ***** ***
originalCons : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
finalCons : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAATAAATTTACTAACAATATTATTAAACATATTAACGTTCTAAAAAAAAAAACCTCATATAATTATCATAATTTAAAGCATCGAATTTCACAATGT
Unaligned ( gi|17 ): CACATACTCACAAAAAATATGACCAGTTATTGTTAATTGTACCACAGTATTTGTGATCGACAGAAATGCCTAAAAGTGAATTAAACGGAATGTA
Unaligned ( gi|20 ): CATATATAGTTATGATCCTTCAATGGACTAATTAATTTATATTTGTTAAAACATATCACATACATTAATATG
Unaligned ( gi|22 ): CACATAATCACATAAAATATGACCAGTTATGTTACTCGTACCATAGTGTTTCACATAATCACATAAAA
Unaligned ( gi|24 ): CTCAGCATGTTATGTGTACAGAAACAGTTACATGTA
Unaligned ( gi|25 ): AAGATTAATCATATCGTGTAGATGATTACGT
Alignments
lowQualScore : 11111
lowQualScore : 0 2 2 2 2 33 33 222 5 11111 1 777 444 2 33 777777 8888888 33
lowQualScore : . . . . . .. .. ... . ..... . ... ... . .. ...... ....... ..
lowQualScore : 4 9 9 2 4 33 22 888 0 66666 0 888 444 5 44 222222 1111111 88
consensus : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
Reference ( family-2610 ) : TTTATTTCCGTCTCATCATAAT-ATACAAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTATGCCATTCATATTAGAATTATAAGAGACT-C-CATA-TT-----AAAANCA---ATTATCCT---TACA-T--GTACAA------AT-------ANCGTCCTTCAATG
gi|1 : GTTTCATCATAAT-ATACCAACATA-TAATAAAATCAATGTACATATGCATG-AAATA-AA--GTTTATTATGCCATTCACATTAGAATTATAAGAGATT-C-CATA-TTAAAAAAAAAACAAC-ATTATTCT---TACA-T--AGACAG------TT-------ATGATCCTTCAGT
gi|10 : TTTATTTCCATCTCATCATGTT-ATGTAAACATA-CAGTAAAAT----GTACAAACGCATG-AA--A-TG--AAATAA-ATGCCATTCATATAAGACATATAAGAGACT-C-CATATTT-----AAAAAT----ATTATCTT---AACA-C--GTACAG------TT-------ATGGTCCTTCAGTtgactgatttatttatatttgttaaaacatattacatacataaacatgaccagttattgttaatcgtaccaaagtacatgacaacgtgatacagaatactaaaatagaatta
gi|11 : tatatattcTGCATATGCATA-AA-TA-GA--TTATATTATATCATTCAACTTTGAATTAAATGATACT-T-CATG-TT-----AAAAGCA---ATTATATC---TACA-T--ATACAAGTACATAC-------AGCGTCCGTCAATag
gi|12 : TTTATTTCCATCTCATCATAAT-ATACACACACA-CTATAAAATCAATGTACATACGCATG-AA-TA-TA--GTATATTTTGCCATTCATATCAGAATTATAGGAGACT-T-CATA-TT-----AAAATCA---ATAATCTT---TATA-T--GTACAA------AT-------ACCGTCCTTCAATGtgaaatataatattttataaaaaacatatcaccaactcacttaa
gi|13 : TTCATTTTCGTCTCATCATAAT-ATTCAAATATA-AAATAAAAACAATGTACATACGAATT-AA-TA-TA--ATGTGTTATGGCATTCGTAATATAATTATAAGA-------CACA-TA-----ACCACCA---ATAATCAT---TAAA-T--GTACAA------AT-------GAAGTCCTTCAA
gi|14 : tcTTTATTTCCATCGCATTATAAT-ATAC---------AATAAAATCAATGTACA----CACG-AA-T--TG--ATAAATTTTGTCA--------GGA----------------CATA-TG-----AAGATTA---ATTATCCT---TACA-TGCGCACAA------AT-------ACTGTCCTTagga
gi|15 : atattc-AA-TG-AA--ATATATTATGCCATTCGTATTAGAATTATAAGAGACT-T-CATA-TA-----AAAAACACACATTATTCT---TACA-T--ATACAG------TT-------ATGATCCATCAATGtttaaagagacgttaaaa
gi|18 : tga-CATG-TT-----AAAAGCA---GTTATCTT---AACA-T--GCACGA------AT-------AACGTCCTTCAGTGgactt
gi|19 : TTATTCCC---TC-TCATAAT-ATACAAACATA-CAAAAAAATCAATATACAAACACATGAAA-TA-AA--ATATATTACGCCATTCATATGAGAATTATgaataaattgttttacttacagtttaagacatatcacatactcaca
gi|2 : taACGAATA-AA-TA-TA--GTATATTATGCCATTCATATTAGAATAGAAAGAGACTAC-TA-A-TC-----AAAAGCA---ATTAT-CT---TATA-T--GTACAA------AT-------AACGTCGGTCAAT
gi|21 : CGTCTCATCCTAAT-ATTCGAACATA-CAATAAAACCAATAGATATACGCATG-AA-TA-AA--GTATACTATagacttaatatgtcaatttgttttaaagcatatcacatacaaaaaatatgaaaaatgttattgtttaacgttccatattccataatgtatcacatattgatatagaaatgtttaaaaatgtattgagcata
gi|23 : tgtTTTTTTTCCATCTCATCACACT-ATACAAACATA-CAATAAAATCAACGTACATACACATG-A
gi|3 : agtcTATTCCCGTCCCTTCATGTT-ATACAGACAAA-CAATAAAATCAACGTACATACACGTG-AA-TA-TA--GCATAGTATGACATTCATATTTGAATTTTAAGAGACC-T-CATA-TT-----AAAAGCA---ATTATCTT---TTAA-A--GTGCAA------AT-------AACGTTCTTCAATt
gi|4 : atattctg-AA-TAGTA--GTATATTATGCCATTCGTATTATAATTATAAGAGACT-CTCA-A-TC-----AAAGTAA---AGTGTGCT---TACG-T--GTAC-A------AT-------AACG-ACTTCAATGcgactttgaatatggttatctattttaagacatatcacaaactcacatg
gi|5 : aTATTTCCGTCTCAT---AAT-ATACAATCATA-CAATAAAATTATTGTAAATACGCATG-AA-TA-CA--GTATAGTATGCTATTCTTATCAGAATTATAAGAGACT-C-CATA-TT-----AAAATCG---ACTATCCT---AAAA-T--GTGCAA------ATAGTAAAAAACATCGTTCAATGgacttaaaatcacattctcacaaaaactttggccaattattattaatcgtaccatagtgtttctcaaaatgatatggaacatgtattaagcggaatata
gi|6 : tacagatactgTTTTTGTTTCATCATTAT-ATACA----TA-CAATAAAATCTTTTTACTTACGCATG-GA-TA-TA--GTATATTATGTCATTCATAACATAATTAAAAGTGAAT-C-CATATTT-----AAAATCA---A-AACCTT---TACA-T--GTACAA------AT-------ACCTTCCTTCAATGgacg
gi|7 : tatattccttcacTTTATTTCCGTCTCATCAAAAT-AAACAAAGATA-CAATAAAATCAATGTGCACACGCATG-AA--A-TAATGTATATGATGACTTTTATTTTAAAA-TATAAAAGACT-C-AATA-TTTAAA-AAAAAC----ATTATCCT---TACATT--GTTCAA------TT-------ATAGTCTCTCAATGaac
gi|8 : cTTCATTTCCATTGCATCATAATTATACGAACATA-CAATAAAATCAATGTACATACGCATG-AA-TA-TA--G-A-AGTATGCCATTCAAATTTGAATTATAAGAGACT-C-CATA-TT-----AAAATTA---ATTATCTT---TACA-A--ATACAA------AT-------AACGTCCTTTGGTGga
gi|9 : tatatcTTATTTCCATCTCCGTATAAT-AAACAAATATTTCAATAAAATCAATGTACATGCGCATG-TA-TA-AA--GTATAGTATCGTATTCATATTAAAATTATAAGAGACT-C-CTTA--C-----ATGAACG---AGTATCTTCAGTGGA-C--GTAAAA------AT-------G-----CTTCAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAATAAATTTACTAACAATATTATTAAACATATTAACGTTCTAAAAAAAAAAACCTCATATAATTATCATAATTTAAAGCATCGAATTTCACAATGT
Unaligned ( gi|17 ): CACATACTCACAAAAAATATGACCAGTTATTGTTAATTGTACCACAGTATTTGTGATCGACAGAAATGCCTAAAAGTGAATTAAACGGAATGTA
Unaligned ( gi|20 ): CATATATAGTTATGATCCTTCAATGGACTAATTAATTTATATTTGTTAAAACATATCACATACATTAATATG
Unaligned ( gi|22 ): CACATAATCACATAAAATATGACCAGTTATGTTACTCGTACCATAGTGTTTCACATAATCACATAAAA
Unaligned ( gi|24 ): CTCAGCATGTTATGTGTACAGAAACAGTTACATGTA
Unaligned ( gi|25 ): AAGATTAATCATATCGTGTAGATGATTACGT