lowQualScore : 6666666666666666 1111111 111 44444444 4444444 2222222 1111 1 222222 1111111111 11111 1111 1111111
lowQualScore : 6 2 2 1111111111111111 6666666 4 000 5 6 6 0 8 55555555 1 7 8 3333333 3 6666666 2 2 8 0 0 5 0 0 0 7777 3 8 0 8 333333 7777777777 777 4 2 33333 1 77 2222 1 5 8888888 99
lowQualScore : . . . ................ ....... . ... . . . . . ........ . . . ....... . ....... . . . . . . . . . .... . . . . ...... .......... ... . . ..... . .. .... . . ....... ..
lowQualScore : 0 5 9 1111111111111111 2222222 3 000 7 0 7 6 0 00000000 0 3 3 3333333 2 0000000 5 2 0 8 8 6 8 8 8 0000 2 0 0 0 000000 5555555555 000 0 6 11111 6 99 1111 7 7 6666666 22
consensus : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAGGAGAGATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCC-----TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCTATAA-------CAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTNTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Reference ( gi|1 ) : GGAAGAGACTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACGTTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCCCCCCCTTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCTTTAA-------CAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|4 : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACTCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTCAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAA
gi|9 : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGACTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccccccccccaccccaccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattgtttctatttatacttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgaaatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatctggtatgaaatatggcttatttatacaaataagacaatcataaagcaaagtttaacttataaactgtttaaaccctatt
gi|11 : GGAAGAGGCTATTTATGAAGAAGGTTCCC-TGTCACTGCGCATTGTCAATATTTT-TTCATATTCGCA------ATATCTCTGCTGCGAATATGAAAAACCAAACCCTCCATTTTTGGAGAGTATTGAACCTCCAACCGTCTTGAC--------GTTTATATTAGATTTTTCTACATTGTGAAGGAGAAATAATAAATTTCTTTT
gi|2 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTTTATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCC--------TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAA-TGCACCCCACCCACAAACAGATCTTTAAAGTTTAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTATTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGTGTTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTTGCTATACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATAa
gi|3 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTTTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTGTA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATAT---AATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCCC----TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCTATAA-------CAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAA-ATGACAGTG-A-----TTGTTTCTATTTATACTTGT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCAATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|5 : AAGTGGCTATTTATCAAGAAGGTTCCCCTGTCACTGTGCATGATCAATATTTTTTTCATATTCGCA------ATATCTCTCCTTCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATgt
gi|18 : AGAGGCTAAATATCAAGAAGGTTCCC-TGTCAATGCGCATGATCAA---CTT-GTAACATTCGGA------ATA-------CG-GAATATGAAAAACCCAAACCTCCATTTTGGGAGAGTATTGA
gi|19 : gtTTCCCTGTGACTGCGCATGATCAATATTTT-TTCATATTCACA------AT--------------TATGAAAAACCCAAACCTCAATTTTTGGAGAGTATTGAACCT-------TC
gi|2 : TTT-TTCATATTCGCAGGAGAGATAT------TGCGAATATGAAAAA
gi|3 : gaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatatTTT-TTCATATTCGCAGGAGAGATAT------TGCGAATATGAAAAAcccaaacctccatttctggagagtattgaaccttcttgacgtttatctgtttatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggagaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgactttaaaatttggttttaccagtgggagtttgttatttttagtttttttatgagtataacaatgtaatcgataacttatataccttcattacaaaaattgttaccccccccccttcccttacacacatacaaacatgtatatggaactgtcattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaatgcaccccacccacaaacagatctttaaagtttaacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattatttgtatttatatttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtgtttttattgtagaaattgtaaatacagaaaagaggtaatactttctttgctatacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgagatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatttggtatgaaatatggcttatttatacaaataagacaatcattaagcaaagtttaacttataaactttttaaaccctatttagtttccattcagtaaggcaaattgaaatgaaaataaagaatattgaaatacttgcatacaatcattcagtctgtatgtcaactatatatata
gi|4 : gaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatatTTT-TTCATATTCGCAGGAGAGATAT------TGCGAATATGAAAAAcccaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattttgaaggaaaaatgatattctcttgacgaatatacattgtatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatataataatgtgactttaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaatcgataacttatataccttcattacaaaaattgttaccccccccccccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaatgacagtgattgtttctatttatacttgttaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgagatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatttggtatgaaatatggcttatttatacaaataagacaatcattaagcaaagtttaacttataaactttttaaacccaatttagtttccattcagtaaggcaaattgaaatgaaaataaagaatattgaaatacttgcatacaatcattcagtctgtatgtcaactatatatatagt
gi|5 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatatTTT-TTCATATTCGAAGGAGAGATAT------TGCGAATATGAAAAActcaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgacttcaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccccccccccaccccaccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattgtttctatttatacttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgaaatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatctggtatgaaatatggcttatttatacaaataagacaatcataaagcaaagtttaacttataaactgtttaaaccctatt
gi|9 : aagtggctatttatcaagaaggttcccctgtcactgtgcatgatcaatattTTT-TTCATATTCGCAGGAGAGATAT------TGCGAATATGAAAAAcccaaacctccatttctggagagtattgaaccttcttgacgtttatctgtttatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggagaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgactttaaaatttggttttaccagtgggagtttgttatttttagttttttatgagtataacaatgtaatcgataacttatataccttcattacaaaaat
gi|11 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatatTTT-TTCATATTCGCAGCAGAGATAT------TGCGAATATGAAAAAcccaaacctccatttctggagagtattgaaccttcttgacgtttatctgtttatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggagaaataacatttagacattgactggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgactttaaaatttggttttaccagtgggagtttgttatt
gi|14 : ggaagaggctatttatgaagaaggttccctgtcactgcgcattgtcaatat-------TCTTGACGTTTATTTGTTTATATTACATGTTTCTGTTTTGTGATGGAAAAATGATA---TTCTCTTGACGAATATATATTATATTTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTccaaaccctccatttttggagagtattgaacctccaaccgtcttgacgtttatattagatttttctacattgtgaaggagaaataataaatttctttta
gi|11 : TCTTGACG--TTTATATTAGA-TTTTTCTACATTGTGAAGGAGAAATAA
gi|17 : ggaagaggctatttatgaagaaggttccctgtcactgcgcattgtcaatattttttcatattcgcaatatctctgctgcgaatatgaaaaaccaaaccctccatttttggagagtattgaacctccaaccgATAGTATATAGATCTTGATTGGTAGGTAGTGTTCGCCCACAATTCTGTAAAATATCAAAATAATGTGAC-TTAAAATTTGGTTTTAT------GAGTCTGTTA-TTTCAATATTTT-ATGCGTAtaaatttctttta
gi|10 : AATCGATAACTTATATACCTTCATTACAAAAATT
gi|4 : CCCCCCCCACCCCACCCCTTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCTATAA-------CAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTCTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTTTTTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAAATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATCTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TAAAGCAAAGTTTAACTTAT-------AAACTGTTTAAACCCTATTaaaggctttcaattgtgcaatgatgtggactttggttaaaatatttggtatgaaatattgcttatttatacaaataagacaatcattaagcaaagtttaacttataaactttttaaaccctatttagtttccattcagtaaggcaaattgaaatgaaaataaagaatattgaaatacttgcatacaatcattcagtctgtatgtcaactatatatata
gi|13 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatattttttcatattcgcaatatctctcctgcgaatatgaaaaactcaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgacttcaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccATGCTGCAGTCTCAACATATGATTACTCTTTGAGAAAAAATGACAGTGTAACTGTTTGTTTGTGTTTATACTAAT-GAAAGAGTGGTTTAA------AAACATTGTTCTGTAACTTCTCAGTGTGTATCAATATTAAATATGT-
gi|12 : TTATGTCAACGGTGGTTT-AAACAC---ATA-TGTTCTGT---T----------TACCGATGTTAA-TAAGG-TTT-TTATTATAGAACTTATTAAAACAAGAAAAAAGGTACAAGTAAAACTTTTCTAGCTTGACACAAAAAGTATATCAGGGAGAAAATCTTTGTAGTATTTAGTAATCCAATATGAATATCACAAACTTTTCCGAG
gi|8 : ATAC-AGAAAAGAG------ATAATATTTT-TTAGCTTGACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAATA----------CAA---GAA-AGTACAAAC-CCTTCTAGGAGTGAGATGTCAGTTCAAGTCTGACCTTTGACAATCTAATAGGCTTCCATTAATTTTTCAT-----------A--TAAAGGATTTTAATTGTGCAATGAAGCAGACTTTTGT-------TTTAG------ATGT----GGCTTATTTATACAAAT---TCAA-CATTTAAGCAAATTTTAAGTTATTTTTTGAAAATCTTCAAAACCTTGTATAATTTCCATTCAGTGAGATGTAGATTCAAATAAAAATATATATTTTTAAAATAATTGCATATAAT
gi|7 : atTACTTTCTTAACTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTATAAACTTATCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATA-------------TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATATATATGGCTTATTTATACAAATAAGACAAATA-TTAAGCAAATTTTAACTTAT-------AAACTTTTTAAACCGTATTTAGTTTCCATTCAATAAG--GCAAATTGAAATAAAAATAAAGAATATTTAAATACTTGCATACAATCATTCATTCTGTATGTCAACTATATATAT
gi|6 : TTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATAc
gi|16 : ACACAGGAAGT-TATCAAAAAGATAGTCTTAATAGTA----------CAA---GAA-AGTACACACTCCTTCTGGGAGT-AGATGTCAGTTCAAGTCTGGCCTATGACAAAATGGTAGACTTCCATCAGTT
gi|15 : tgAAGTCTATC---GAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCTAAGGAGTGAGATGTCAGTTCAACTCTGACCTTTGACAAATTGATAGATTTCCATTA
gi|20 : TAGTA----------TAA---GCA-ATTACGCCCTACTTT--GTAGGTAGACGCCAGTTCAAATCTGGCCatcattgtttcacactt
gi|10 : AATCGATA-ACTTATAT-ACCTT--CAT-----TACAAAAATTAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----TGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Alignments
lowQualScore : 111111
lowQualScore : 000000 1111111 22222 1 33333333 22222 1111 111111 1111111111 1111 1111111
lowQualScore : 1 4 999999 1 4444444 2 888 5 5 6 55555 2 0 3 66666666 0 8 00000 1 6 3 4444 1 6 8 6 999999 5555555555 666 3 1 66 0 66 0000 0 5 6666666 77
lowQualScore : . . ...... . ....... . ... . . . ..... . . . ........ . . ..... . . . .... . . . . ...... .......... ... . . .. . .. .... . . ....... ..
lowQualScore : 1 4 666666 1 4444444 5 888 7 7 7 00000 5 0 2 22222222 8 0 00000 0 7 2 2222 0 7 0 7 222222 9999999999 444 6 5 44 2 99 6666 4 0 2222222 99
consensus : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Reference ( family-2583 ) : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCAGGAGAGATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTNTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|1 : GGAAGAGACTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACGTTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----T---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|10 : AATCGATA-ACTTATAT-ACCTT--CAT-----TACAAAAATTAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----TGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|11 : GGAAGAGGCTATTTATGAAGAAGGTTCCC-TGTCACTGCGCATTGTCAATATTTTTT-CATATTCGCA------ATATCTCTGCTGCGAATATGAAAAACCAAACCCTCCATTTTTGGAGAGTATTGAACCTCCAACCGTCTTGAC--------GTTTATATTAGATTTTTCTACATTGTGAAGGAGAAATAATAAATTTCTTTT
gi|12 : TTATGTCAACGGTGGTTT-AAACAC---ATA-TGTTCTGT---T----------TACCGATGTTAA-TAAGG-TTT-TTATTATAGAACTTATTAAAACAAGAAAAAAGGTACAAGTAAAACTTTTCTAGCTTGACACAAAAAGTATATCAGGGAGAAAATCTTTGTAGTATTTAGTAATCCAATATGAATATCACAAACTTTTCCGAGa
gi|13 : ATGCTGCAGTCTCAACATATGATTACTCTTTGAGAAAAAATGACAGTGTAACTGTTTGTTTGTGTTTATACTAAT-GAAAGAGTGGTTTAA------AAACATTGTTCTGTAACTTCTCAGTGTGTATCAATATTAAATATGT-
gi|14 : -------TCTTGACGTTTATTTGTTTATATTACATGTTTCTGTTTTGTGATGGAAAAATGATA---TTCTCTTGACGAATATATATTATATTTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTT
gi|15 : AAGTCTATC---GAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCTAAGGAGTGAGATGTCAGTTCAACTCTGACCTTTGACAAATTGATAGATTTCCATTA
gi|16 : ACACAGGAAGT-TATCAAAAAGATAGTCTTAATAGTA----------CAA---GAA-AGTACACACTCCTTCTGGGAGT-AGATGTCAGTTCAAGTCTGGCCTATGACAAAATGGTAGACTTCCATCAGTTatcattgtttcacactt
gi|17 : tgATAGTATATAGATCTTGATTGGTAGGTAGTGTTCGCCCACAATTCTGTAAAATATCAAAATAATGTGAC-TTAAAATTTGGTTTTAT------GAGTCTGTTA-TTTCAATATTTT-ATGCGTA
gi|18 : AGAGGCTAAATATCAAGAAGGTTCCC-TGTCAATGCGCATGATCAAC---TTGT-AACATTCG-----GA-ATAC-------G-GAATATGAAAAACCCAAACCTCCATTTTGGGAGAGTATTGA
gi|19 : gtTTCCCTGTGACTGCGCATGATCAATATTTTTT-CATATTCACA--------AT------------TATGAAAAACCCAAACCTCAATTTTTGGAGAGTATTGAACCT-------TC
gi|2 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTTTATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCC----TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAA-TGCACCCCACCCACAAACAGATCTTTAAAGTTTAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTATTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGTGTTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTTGCTATACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|20 : TAGTA----------TAA---GCA-ATTACGCCCTACTTT--GTAGGTAGACGCCAGTTCAAATCTGGCC
gi|3 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTTTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTGTA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATAT---AATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCCCTTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAA-ATGACAGTG-A-----TTGTTTCTATTTATACTTGT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCAATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|4 : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACTCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTCAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAAgt
gi|4 : CCCA-----CCCCACCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTCTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTTTTTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAAATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATCTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TAAAGCAAAGTTTAACTTAT-------AAACTGTTTAAACCCTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccccccccccaccccaccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattgtttctatttatacttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgaaatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatctggtatgaaatatggcttatttatacaaataagacaatcataaagcaaagtttaacttataaactgtttaaaccctatt
gi|5 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatattttttcatattcgcaatatctctcctgcgaatatgaaaaactcaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgacttcaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccccccccAAGTGGCTATTTATCAAGAAGGTTCCCCTGTCACTGTGCATGATCAATATTTTTTTCATATTCGCA------ATATCTCTCCTTCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAAT
gi|6 : TTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|7 : TACTTTCTTAACTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTATAAACTTATCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATA-------------TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATATATATGGCTTATTTATACAAATAAGACAAATA-TTAAGCAAATTTTAACTTAT-------AAACTTTTTAAACCGTATTTAGTTTCCATTCAATAAG--GCAAATTGAAATAAAAATAAAGAATATTTAAATACTTGCATACAATCATTCATTCTGTATGTCAACTATATATAT
gi|8 : ATAC-AGAAAAGAG------ATAATATTTT-TTAGCTTGACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAATA----------CAA---GAA-AGTACAAAC-CCTTCTAGGAGTGAGATGTCAGTTCAAGTCTGACCTTTGACAATCTAATAGGCTTCCATTAATTTTTCAT-----------A--TAAAGGATTTTAATTGTGCAATGAAGCAGACTTTTGT-------TTTAG------ATGT----GGCTTATTTATACAAAT---TCAA-CATTTAAGCAAATTTTAAGTTATTTTTTGAAAATCTTCAAAACCTTGTATAATTTCCATTCAGTGAGATGTAGATTCAAATAAAAATATATATTTTTAAAATAATTGCATATAATc
gi|9 : atGGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTTTT-CATATTCGCA------ATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGACTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATT
Alignments
lowQualScore : 1111111 22222 1 33333333 22222 1111 111111 1111111111 1111 1111111
lowQualScore : 4 4444444 2 888 5 5 6 55555 2 0 3 66666666 0 8 00000 6 3 4444 1 6 8 6 999999 5555555555 666 3 1 66 0 66 0000 0 5 6666666 77
lowQualScore : . ....... . ... . . . ..... . . . ........ . . ..... . . .... . . . . ...... .......... ... . . .. . .. .... . . ....... ..
lowQualScore : 4 4444444 5 888 7 7 7 00000 5 0 2 22222222 8 0 00000 7 2 2222 0 7 0 7 222222 9999999999 444 6 5 44 2 99 6666 4 0 2222222 99
consensus : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Reference ( family-2583 ) : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|1 : GGAAGAGACTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACGTTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----T---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|10 : AATCGATA-ACTTATAT-ACCTT--CAT-----TACAAAAATTAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----TGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|11 : GGAAGAGGCTATTTATGAAGAAGGTTCCC-TGTCACTGCGCATTGTCAATATTTT-TTCATATTCGCAATATCTCTGCTGCGAATATGAAAAACCAAACCCTCCATTTTTGGAGAGTATTGAACCTCCAACCGTCTTGAC--------GTTTATATTAGATTTTTCTACATTGTGAAGGAGAAATAATAAATTTCTTTT
gi|12 : TTATGTCAACGGTGGTTT-AAACAC---ATA-TGTTCTGT---T----------TACCGATGTTAA-TAAGG-TTT-TTATTATAGAACTTATTAAAACAAGAAAAAAGGTACAAGTAAAACTTTTCTAGCTTGACACAAAAAGTATATCAGGGAGAAAATCTTTGTAGTATTTAGTAATCCAATATGAATATCACAAACTTTTCCGAGa
gi|13 : ATGCTGCAGTCTCAACATATGATTACTCTTTGAGAAAAAATGACAGTGTAACTGTTTGTTTGTGTTTATACTAAT-GAAAGAGTGGTTTAA------AAACATTGTTCTGTAACTTCTCAGTGTGTATCAATATTAAATATGT-
gi|14 : -------TCTTGACGTTTATTTGTTTATATTACATGTTTCTGTTTTGTGATGGAAAAATGATA---TTCTCTTGACGAATATATATTATATTTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTT
gi|15 : AAGTCTATC---GAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCTAAGGAGTGAGATGTCAGTTCAACTCTGACCTTTGACAAATTGATAGATTTCCATTA
gi|16 : ACACAGGAAGT-TATCAAAAAGATAGTCTTAATAGTA----------CAA---GAA-AGTACACACTCCTTCTGGGAGT-AGATGTCAGTTCAAGTCTGGCCTATGACAAAATGGTAGACTTCCATCAGTTatcattgtttcacactt
gi|17 : tgATAGTATATAGATCTTGATTGGTAGGTAGTGTTCGCCCACAATTCTGTAAAATATCAAAATAATGTGAC-TTAAAATTTGGTTTTAT------GAGTCTGTTA-TTTCAATATTTT-ATGCGTA
gi|18 : AGAGGCTAAATATCAAGAAGGTT-CCCTGTCAATGCGCATGATCAA---CTT-GTAACATTCGGAATA-------CG-GAATATGAAAAACCCAAACCTCCATTTTGGGAGAGTATTGA
gi|19 : gtTTCCCTGTGACTGCGCATGATCAATATTTT-TTCATATTCACAAT--------------TATGAAAAACCCAAACCTCAATTTTTGGAGAGTATTGAACCT-------TC
gi|2 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTTTATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCC----TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAA-TGCACCCCACCCACAAACAGATCTTTAAAGTTTAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTATTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGTGTTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTTGCTATACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|20 : TAGTA----------TAA---GCA-ATTACGCCCTACTTT--GTAGGTAGACGCCAGTTCAAATCTGGCC
gi|3 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTTTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTGTA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATAT---AATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCCCTTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAA-ATGACAGTG-A-----TTGTTTCTATTTATACTTGT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCAATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|4 : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACTCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTCAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAAgt
gi|4 : CCCA-----CCCCACCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTCTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTTTTTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAAATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATCTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TAAAGCAAAGTTTAACTTAT-------AAACTGTTTAAACCCTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccccccccccaccccaccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattgtttctatttatacttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgaaatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatctggtatgaaatatggcttatttatacaaataagacaatcataaagcaaagtttaacttataaactgtttaaaccctatt
gi|5 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatattttttcatattcgcaatatctctcctgcgaatatgaaaaactcaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgacttcaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccccccccAAGTGGCTATTTATCAAGAAGGTTCCCCTGTCACTGTGCATGATCAATATTTTTTTCATATTCGCAATATCTCTCCTTCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAAT
gi|6 : TTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|7 : TACTTTCTTAACTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTATAAACTTATCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATA-------------TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATATATATGGCTTATTTATACAAATAAGACAAATA-TTAAGCAAATTTTAACTTAT-------AAACTTTTTAAACCGTATTTAGTTTCCATTCAATAAG--GCAAATTGAAATAAAAATAAAGAATATTTAAATACTTGCATACAATCATTCATTCTGTATGTCAACTATATATAT
gi|8 : ATAC-AGAAAAGAG------ATAATATTTT-TTAGCTTGACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAATA----------CAA---GAA-AGTACAAAC-CCTTCTAGGAGTGAGATGTCAGTTCAAGTCTGACCTTTGACAATCTAATAGGCTTCCATTAATTTTTCAT-----------A--TAAAGGATTTTAATTGTGCAATGAAGCAGACTTTTGT-------TTTAG------ATGT----GGCTTATTTATACAAAT---TCAA-CATTTAAGCAAATTTTAAGTTATTTTTTGAAAATCTTCAAAACCTTGTATAATTTCCATTCAGTGAGATGTAGATTCAAATAAAAATATATATTTTTAAAATAATTGCATATAATc
gi|9 : atGGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGACTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATT
Alignments
lowQualScore : 1111111 22222 1 33333333 22222 1111 111111 1111111111 1111 1111111
lowQualScore : 4 4444444 2 888 5 5 6 55555 2 0 3 66666666 0 8 00000 6 3 4444 1 6 8 6 999999 5555555555 666 3 1 66 0 66 0000 0 5 6666666 77
lowQualScore : . ....... . ... . . . ..... . . . ........ . . ..... . . .... . . . . ...... .......... ... . . .. . .. .... . . ....... ..
lowQualScore : 4 4444444 5 888 7 7 7 00000 5 0 2 22222222 8 0 00000 7 2 2222 0 7 0 7 222222 9999999999 444 6 5 44 2 99 6666 4 0 2222222 99
consensus : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Reference ( family-2583 ) : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|1 : GGAAGAGACTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACGTTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----T---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|10 : AATCGATA-ACTTATAT-ACCTT--CAT-----TACAAAAATTAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----TGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|11 : GGAAGAGGCTATTTATGAAGAAGGTTCCC-TGTCACTGCGCATTGTCAATATTTT-TTCATATTCGCAATATCTCTGCTGCGAATATGAAAAACCAAACCCTCCATTTTTGGAGAGTATTGAACCTCCAACCGTCTTGAC--------GTTTATATTAGATTTTTCTACATTGTGAAGGAGAAATAATAAATTTCTTTT
gi|12 : TTATGTCAACGGTGGTTT-AAACAC---ATA-TGTTCTGT---T----------TACCGATGTTAA-TAAGG-TTT-TTATTATAGAACTTATTAAAACAAGAAAAAAGGTACAAGTAAAACTTTTCTAGCTTGACACAAAAAGTATATCAGGGAGAAAATCTTTGTAGTATTTAGTAATCCAATATGAATATCACAAACTTTTCCGAGa
gi|13 : ATGCTGCAGTCTCAACATATGATTACTCTTTGAGAAAAAATGACAGTGTAACTGTTTGTTTGTGTTTATACTAAT-GAAAGAGTGGTTTAA------AAACATTGTTCTGTAACTTCTCAGTGTGTATCAATATTAAATATGT-
gi|14 : -------TCTTGACGTTTATTTGTTTATATTACATGTTTCTGTTTTGTGATGGAAAAATGATA---TTCTCTTGACGAATATATATTATATTTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTT
gi|15 : AAGTCTATC---GAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCTAAGGAGTGAGATGTCAGTTCAACTCTGACCTTTGACAAATTGATAGATTTCCATTA
gi|16 : ACACAGGAAGT-TATCAAAAAGATAGTCTTAATAGTA----------CAA---GAA-AGTACACACTCCTTCTGGGAGT-AGATGTCAGTTCAAGTCTGGCCTATGACAAAATGGTAGACTTCCATCAGTTatcattgtttcacactt
gi|17 : tgATAGTATATAGATCTTGATTGGTAGGTAGTGTTCGCCCACAATTCTGTAAAATATCAAAATAATGTGAC-TTAAAATTTGGTTTTAT------GAGTCTGTTA-TTTCAATATTTT-ATGCGTA
gi|18 : AGAGGCTAAATATCAAGAAGGTT-CCCTGTCAATGCGCATGATCAA---CTT-GTAACATTCGGAATA-------CG-GAATATGAAAAACCCAAACCTCCATTTTGGGAGAGTATTGA
gi|19 : gtTTCCCTGTGACTGCGCATGATCAATATTTT-TTCATATTCACAAT--------------TATGAAAAACCCAAACCTCAATTTTTGGAGAGTATTGAACCT-------TC
gi|2 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTTTATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCC----TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAA-TGCACCCCACCCACAAACAGATCTTTAAAGTTTAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTATTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGTGTTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTTGCTATACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|20 : TAGTA----------TAA---GCA-ATTACGCCCTACTTT--GTAGGTAGACGCCAGTTCAAATCTGGCC
gi|3 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTTTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTGTA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATAT---AATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCCCTTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAA-ATGACAGTG-A-----TTGTTTCTATTTATACTTGT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCAATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|4 : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACTCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTCAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAAgt
gi|4 : CCCA-----CCCCACCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTCTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTTTTTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAAATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATCTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TAAAGCAAAGTTTAACTTAT-------AAACTGTTTAAACCCTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccccccccccaccccaccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattgtttctatttatacttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgaaatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatctggtatgaaatatggcttatttatacaaataagacaatcataaagcaaagtttaacttataaactgtttaaaccctatt
gi|5 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatattttttcatattcgcaatatctctcctgcgaatatgaaaaactcaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgacttcaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccccccccAAGTGGCTATTTATCAAGAAGGTTCCCCTGTCACTGTGCATGATCAATATTTTTTTCATATTCGCAATATCTCTCCTTCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAAT
gi|6 : TTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|7 : TACTTTCTTAACTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTATAAACTTATCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATA-------------TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATATATATGGCTTATTTATACAAATAAGACAAATA-TTAAGCAAATTTTAACTTAT-------AAACTTTTTAAACCGTATTTAGTTTCCATTCAATAAG--GCAAATTGAAATAAAAATAAAGAATATTTAAATACTTGCATACAATCATTCATTCTGTATGTCAACTATATATAT
gi|8 : ATAC-AGAAAAGAG------ATAATATTTT-TTAGCTTGACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAATA----------CAA---GAA-AGTACAAAC-CCTTCTAGGAGTGAGATGTCAGTTCAAGTCTGACCTTTGACAATCTAATAGGCTTCCATTAATTTTTCAT-----------A--TAAAGGATTTTAATTGTGCAATGAAGCAGACTTTTGT-------TTTAG------ATGT----GGCTTATTTATACAAAT---TCAA-CATTTAAGCAAATTTTAAGTTATTTTTTGAAAATCTTCAAAACCTTGTATAATTTCCATTCAGTGAGATGTAGATTCAAATAAAAATATATATTTTTAAAATAATTGCATATAATc
gi|9 : atGGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGACTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATT
blockSeqs : T CCAACCG G AAT T A T . C C A TTAAAGTT T ACTGT G T TCAG A G T A GTACAA TTTAGTAATC TAT T G AA AT ATAT T TTTTTGA AT
blockSeqs : . . G . . . . . C . A A . . . T . G . . . . . . . A AA . . . . .
blockSeqs : . . G . . . . . . . . A . . . T . G . . . . . . . T AA . . . . .
blockSeqs : . . G . . . . . . . . . G . . . . . . . A AA . . . . .
blockSeqs : . . G . . . . . . . . . . . . . . A A . . . . .
blockSeqs : . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . A . . . . .
blockSeqs : . . . . . A
blockSeqs : . . . T
blockSeqs : . . . .
blockSeqCons :
originalCons : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
finalCons : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Alignments
lowQualScore : 1111111 22222 1 33333333 22222 1111 111111 1111111111 1111 1111111
lowQualScore : 4 4444444 2 888 5 5 6 55555 2 0 3 66666666 0 8 00000 6 3 4444 1 6 8 6 999999 5555555555 666 3 1 66 0 66 0000 0 5 6666666 77
lowQualScore : . ....... . ... . . . ..... . . . ........ . . ..... . . .... . . . . ...... .......... ... . . .. . .. .... . . ....... ..
lowQualScore : 4 4444444 5 888 7 7 7 00000 5 0 2 22222222 8 0 00000 7 2 2222 0 7 0 7 222222 9999999999 444 6 5 44 2 99 6666 4 0 2222222 99
consensus : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
Reference ( family-2583 ) : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|1 : GGAAGAGACTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACGTTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCCCCCCCCCCCCCCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----T---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|10 : AATCGATA-ACTTATAT-ACCTT--CAT-----TACAAAAATTAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----TGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|11 : GGAAGAGGCTATTTATGAAGAAGGTTCCC-TGTCACTGCGCATTGTCAATATTTT-TTCATATTCGCAATATCTCTGCTGCGAATATGAAAAACCAAACCCTCCATTTTTGGAGAGTATTGAACCTCCAACCGTCTTGAC--------GTTTATATTAGATTTTTCTACATTGTGAAGGAGAAATAATAAATTTCTTTT
gi|12 : TTATGTCAACGGTGGTTT-AAACAC---ATA-TGTTCTGT---T----------TACCGATGTTAA-TAAGG-TTT-TTATTATAGAACTTATTAAAACAAGAAAAAAGGTACAAGTAAAACTTTTCTAGCTTGACACAAAAAGTATATCAGGGAGAAAATCTTTGTAGTATTTAGTAATCCAATATGAATATCACAAACTTTTCCGAGa
gi|13 : ATGCTGCAGTCTCAACATATGATTACTCTTTGAGAAAAAATGACAGTGTAACTGTTTGTTTGTGTTTATACTAAT-GAAAGAGTGGTTTAA------AAACATTGTTCTGTAACTTCTCAGTGTGTATCAATATTAAATATGT-
gi|14 : -------TCTTGACGTTTATTTGTTTATATTACATGTTTCTGTTTTGTGATGGAAAAATGATA---TTCTCTTGACGAATATATATTATATTTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTT
gi|15 : AAGTCTATC---GAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCTAAGGAGTGAGATGTCAGTTCAACTCTGACCTTTGACAAATTGATAGATTTCCATTA
gi|16 : ACACAGGAAGT-TATCAAAAAGATAGTCTTAATAGTA----------CAA---GAA-AGTACACACTCCTTCTGGGAGT-AGATGTCAGTTCAAGTCTGGCCTATGACAAAATGGTAGACTTCCATCAGTTatcattgtttcacactt
gi|17 : tgATAGTATATAGATCTTGATTGGTAGGTAGTGTTCGCCCACAATTCTGTAAAATATCAAAATAATGTGAC-TTAAAATTTGGTTTTAT------GAGTCTGTTA-TTTCAATATTTT-ATGCGTA
gi|18 : AGAGGCTAAATATCAAGAAGGTT-CCCTGTCAATGCGCATGATCAA---CTT-GTAACATTCGGAATA-------CG-GAATATGAAAAACCCAAACCTCCATTTTGGGAGAGTATTGA
gi|19 : gtTTCCCTGTGACTGCGCATGATCAATATTTT-TTCATATTCACAAT--------------TATGAAAAACCCAAACCTCAATTTTTGGAGAGTATTGAACCT-------TC
gi|2 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTTTATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCC----TTCCCTTACACACATACAAACATGTATATGGAACTGTCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAA-TGCACCCCACCCACAAACAGATCTTTAAAGTTTAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTATTTGTATTTATATTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGTGTTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTTGCTATACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|20 : TAGTA----------TAA---GCA-ATTACGCCCTACTTT--GTAGGTAGACGCCAGTTCAAATCTGGCC
gi|3 : GAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTTTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTGTA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATAT---AATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAATTGTTACCCC-----CCCCCCCCCCTTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAA-ATGACAGTG-A-----TTGTTTCTATTTATACTTGT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTT-TTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCAATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|4 : GGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACTCAAACCTCCATTTTTGGAGAGTATTGAACCT-------TCTTGACGTTTATCT----ATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAAAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTCAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGGTTTTT-ATGAGTATAACAATGTAAgt
gi|4 : CCCA-----CCCCACCCC-TTCCCTTACACACATACAAACATGTATATGGAACTGCCATTATAAGAGTTTAAAAGCAAAAACATCAAAATAATACACCGCATTAAAATGCACCCCACCCACAAACAGATCT----A---TAACAGTATACTGCAGTCTCAACAAACGTTTACTCTTCGAGAAAAAATGACAGTG-A-----TTGTTTCTATTTATACTTAT-TAAAGAGTGGTTTAAAACATTAAATATTGTTCTGTAACTTC----TGTGTATCAATATTAAGTGTGT-TTTTTTATTGTAGAAATTGTAAATAC-AGAAAAGAG------GTAATACTTTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAAATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATCTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TAAAGCAAAGTTTAACTTAT-------AAACTGTTTAAACCCTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccccccccccccccccccaccccaccccttcccttacacacatacaaacatgtatatggaactgccattataagagtttaaaagcaaaaacatcaaaataatacaccgcattaaaatgcaccccacccacaaacagatctataacagtatactgcagtctcaacaaacgtttactcttcgagaaaaaatgacagtgattgtttctatttatacttattaaagagtggtttaaaacattaaatattgttctgtaacttctgtgtatcaatattaagtgtgtttttttattgtagaaattgtaaatacagaaaagaggtaatactttcttagctttacacaggaagtctatcagggagaaagtctttgtagtacaagaaagtacaaactcctccaaggagtgaaatgtcagttcaagtctgaccttggacaaattgatagacttccattactttttcataatgatatataataaaggctttcaattgtgcaatgatgtggactttggttaaaatatctggtatgaaatatggcttatttatacaaataagacaatcataaagcaaagtttaacttataaactgtttaaaccctatt
gi|5 : ggaagaggctatttatcaagaaggttcccctgtcactgcgcatgatcaatattttttcatattcgcaatatctctcctgcgaatatgaaaaactcaaacctccatttttggagagtattgaaccttcttgacgtttatctatattacatttttctgcattgtgaaggaaaaatgatattctcttgacgaatatacattatatttttctacattgtgaaggaaaaataacatttagacattgattggtaggtgtttttcgatcagagttctgtaaatatcataataatgtgacttcaaaatttggttttaccagtgggagtttgttatttttaggtttttatgagtataacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccccccccAAGTGGCTATTTATCAAGAAGGTTCCCCTGTCACTGTGCATGATCAATATTTTTTTCATATTCGCAATATCTCTCCTTCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGATTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATTTTTAGTTTTTT-ATGAGTATAACAATGTAATCGATAACTTATATACCTTCATTACAAAAAT
gi|6 : TTCTTAGCTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTACAAACTCCTCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATAATGATATATAA--TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATAT----GGCTTATTTATACAAATAAGACAATCA-TTAAGCAAAGTTTAACTTAT-------AAACTTTTTAAACCCTATTTAGTTTCCATTCAGTAAG--GCAAATTGAAATGAAAATAAAGAATATTGAAATACTTGCATACAATCATTCAGTCTGTATGTCAACTATATATATA
gi|7 : TACTTTCTTAACTTTACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAGTA----------CAA---GAA-AGTATAAACTTATCCAAGGAGTGAGATGTCAGTTCAAGTCTGACCTTGGACAAATTGATAGACTTCCATTACTTTTTCATA-------------TAAAGGCTTTCAATTGTGCAATGATGTGGACTTTGGTTAAAATATTTGGTATGAAATATATATGGCTTATTTATACAAATAAGACAAATA-TTAAGCAAATTTTAACTTAT-------AAACTTTTTAAACCGTATTTAGTTTCCATTCAATAAG--GCAAATTGAAATAAAAATAAAGAATATTTAAATACTTGCATACAATCATTCATTCTGTATGTCAACTATATATAT
gi|8 : ATAC-AGAAAAGAG------ATAATATTTT-TTAGCTTGACACAGGAAGTCTATCAGGGAGAAAGTCTTTGTAATA----------CAA---GAA-AGTACAAAC-CCTTCTAGGAGTGAGATGTCAGTTCAAGTCTGACCTTTGACAATCTAATAGGCTTCCATTAATTTTTCAT-----------A--TAAAGGATTTTAATTGTGCAATGAAGCAGACTTTTGT-------TTTAG------ATGT----GGCTTATTTATACAAAT---TCAA-CATTTAAGCAAATTTTAAGTTATTTTTTGAAAATCTTCAAAACCTTGTATAATTTCCATTCAGTGAGATGTAGATTCAAATAAAAATATATATTTTTAAAATAATTGCATATAATc
gi|9 : atGGAAGAGGCTATTTATCAAGAAGGTTCCCCTGTCACTGCGCATGATCAATATTTT-TTCATATTCGCAATATCTCTCCTGCGAATATGAAAAACCCAAACCTCCATTTCTGGAGAGTATTGAACCT-------TCTTGACGTTTATCTGTTTATATTACATTTTTCTGCATTGTGAAGGAAAAATGATA---TTCTCTTGACGAATATACATTATA-TTTTTCTACATTGTGAAGGAGAAATAACATTTAGACATTGACTGGTAGGTGTTTTTCGATCAGAGTTCTGT-AAATATCATAATAATGTGACTTTAAAATTTGGTTTTACCAGTGGGAGTTTGTTATT