lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 4 66666666 1 222 4444444444444444444444444444444444444444 222 1 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111 1 444444 11 1 1111 11 1 1 777777777777777
lowQualScore : 5 0 6 6 00000000 4 5 0 6 1 0 111 1 3 7777777777777777777777777777777777777777 333 5 77 77 5 5 6666 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 6 6 5 2 2 333 4 5 444444 88 2 6 6 6 44 5 77 7777 00 4 5 6 3 0 666666666666666
lowQualScore : . . . . ........ . . . . . . ... . . ........................................ ... . .. .. . . .... .............................................................................................. . . . . . . ... . . ...... .. . . . . .. . .. .... .. . . . . . ...............
lowQualScore : 0 0 0 0 00000000 4 6 7 7 8 3 222 0 8 9999999999999999999999999999999999999999 000 7 99 99 0 6 8888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 7 7 5 5 000 0 0 000000 55 5 0 7 0 77 0 88 8888 22 0 0 0 3 7 777777777777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG-ATAATTAT--ATTTTTATTNTACCTCAATTTAAGTCTCTATGTTNAATTTCCCATACCCGATCAGTCAAT-TATTTTTA---------------ATA-------------TTGACCGGCAAAAT-A--AT--AACACATGCGCGACTTTGATGCGCGTACG--GTTCAAA-------------T---TA-----------AAAC--TCGTTNAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAACGCCAATGTCGTTTTATCTGTCANACGANANTNGTTGGCAAACAAATACTNAATANTAAACGTTTTGCTTCGTTTTCTNGGGAGACACGAATCNGCGCATACATGTTANTGCG---TAAGTTA-CTTTTTTCGGTANAATAAAATAAATATCACGTTCCTGTGAGGGCGCTA-TTGAAAAT-GT--AAACCCTG--AAAACAATA
Reference ( gi|1 ) : TATATAATACTTTATTGCCTGTTTTTACGATACCTCAATGTTATCTTTTGTAAGCATAAGTGGATAGTCATTCACTTTCATTATACCTCAGTTTAAGTCTCTTTGTTAAATTTCCCATAATTGATTAGTCAAT-TATTTTTT---------------ATA-------------TTGACCGGC-AAAT-A--AT--AACACATGCTCGATTTTGATGCGCGTAAA--GTTCAAA-------------T---TA-----------AAAC--TC-TTGGAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGATAATACCAAGGTAATTTTATCTGTCAGACGAGATTTGTTTACAAACAA----TCAATAATAAACGTTTTGCTTCGTTTTCTGGGAAGACACCAACCCACGCATACCTGTTACTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATCACATTCATGTGAGAGCGCTA-TTGAAAGTAGTCAAAACTTTT--AAAACAATA
gi|7 : ATAATTG-ATAATTAT--ATTT--ATTTTCCCTCTGTTTAAGTCTCTATGATAAATTTTCCATAACCAATTGGTC-AT-TATTTTTA---------------ATA-------------TTGGCCAGTAAAAT-A--AT--AATACATGCGCGACTTTGATGCACATACA--GTTCAAA-------------T---
gi|9 : accaggtattttgagatattgcagccagtcaaagtattttggatgactacataTTTTATTTTACCTCAATTTAAGTCACTGTGTTAAATTCCTCGTA-----TTACCCGAT-C------T---------------ATA-------------CTGTACG-----AT-ACTATTGAACACATGCGCGACTTGGATACGCGTAAA--GTTCAAA-------------CAAGTA-----------GTAC--TCATTTAAAAATCCGT---a
gi|13 : aATTGT-CCTCAGTGTAAGTCTCTATGTTGAATTTACCATAACTGATCAgtcacgaaacgctctt
gi|8 : attcagatTTATACCCAAATTAAAGTCGCCATGTTTAATTCTCCATGCCCGATCAGTCAATGTTTTTTTTTTATATTGCCAGGTAATA-------------TTGACCGGCAAAAT-A--AT--AACACA
gi|4 : ATAGCTCAATTTAAGTCTCTATGTTCAATTTCCCATACCTGATCAGTCAAT-AATTTTTA---------------ATACAGCCTGGTAGTTTTGGCTGTCAAAAT-A--AC--AACACATGGGCACCTTTGATGCA-GTATG--GTTCAAACAAGAAGGCATATT---TT-----------AAAC--TTGTTGAAAAATCTGTTTCA-CAAAATGCTCTTTGTGTTTTAGTA-------------TTGAATTGACAATGCCAAGGTCATTTAATCTGTagaagtcgtgttttaaacttgttgaaaaatctgaatcacaaaacgttctttgttcctaacttagtctattgatttgacaaagt
gi|15 : CCTCAATTTAAATCTCTAAGTTAAATAACTCATACCCGATCAGTCAaacagtaattgtctagc
gi|2 : TTTTA---------------ATA-------------TTGACCGGC-AAATTA--AT--AACACATGCGCGATTGTGATGCGCGTACG--GTTCAAA-------------T---TATCCGAATCACGAAACGCTC-TTTG------TGT---T-TTAGT------------------A-------------TAGATTTGATAACGCCTTTGTCGTTTTATCTGTCATAGAAAACTTGTTGGCAAACAAATACTGAATACTAAACGTTTTGCTTCGTTTTCTGGGGAGACACCCATCCGCGCATACATGTTGATGCT---TAAGTTATTTTTTTTCAGTATAATAAAATAAGTATCTCATTCCTGTGAGGGCACTA-TTGAAAATTAT--GAACTATCGAAAAACAATA
gi|6 : ---------------ATA-------------TAGACCGGA-AAAT-A--AA--AACAAATGCGCG-TTTT-ACGTGCGTGAGCGGTTCAAA-------------T---TA-----------AAA---TG-TTGAAAAATTCAT---ATCACG-------------------AAACGCTCTTGTGTTTGATTAGACAATGCCAATGTTATTGTATCTGTCAGACGATAATAGTTGACAAACAA----TTAAT-ATAAACGTTTTGCTTCGTTTTCTTGGGAGACAC
gi|16 : ata---------------ATA-------------TTGACCGGCAAAAT-A--AT--ATCATATACatatccg
gi|3 : gccggtaAGGCACAAATCAGCATATACACGTTACTGCAGCTTAAGTTG-CACTTTTCGGTAAAATAAgc
gi|5 : cataaatatcacgttcctgtgagggcgctatttaaaagtgtcaacctgagaacaatacttttgcccgaggtaccctaaggtaaaaattatcattttttggaacaACACGAATTTACGTATGTGTATTTTTGCG---TAAGTTA-CTTTTattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|10 : aatactatataaacatcacattcctgtgagggcgctattgaacatagtaaacctgaaaataatagtaatgactgcgacaacgccaaagtcGCATATATGTTAGTGCG---TATGTTA-GTTTTTTCGGtaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|5 : tatgtattgacaaaatctatattctatactgcgagggcgttattaaaaaatgtcaacctgagagaaatgatattgaccgcggcgtataagATAAACATCACATTCCTGTGAGGGCGCTA-TTGAACATAGT--AAAC-CTG--AAAATAATAaaggacgtgt
gi|3 : aatactatATAAATATCACGTTCCTGTGAGGGCGCTATTTAAAAGT-GTCAA---CCTG--AGAACAATAgtaatgactgcgacaacgccaaagtcaaaagtaacttacgcaaaaatacacatacgtaaattcgtgttaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): ACATTTCTGTTAGGGTGTTATTTAAAATTGTCAACCTGTGAAAAATAATGTTGACCATGGCAATTGA
Unaligned ( gi|12 ): ATCTGTTTCACGTAACGTTCTTAATGTTTTAGTATTGATTTGACAAAGTCAAGGTAACTT
Unaligned ( gi|14 ): ATATTAATATCACATTCCTTTGAGGGTGATATCAGGAAATGTCAACCTGAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 2 22 1111 111 444444444444444 2222222222222 11111 44444444444444444444444 3333333333333333333333333333333333333333333333333 4444 1 11 111 1 111 111 333
lowQualScore : 3 0 77 88 1 3 1 0000 0 444 111111111111111 7777777777777 1 3 66 1 11111 33333333333333333333333 1 3 7777777777777777777777777777777777777777777777777 2 3 22 2 1 1 1 1 0 4444 1 4 1 11 1 1 444 8 1 2 3 777 444 222
lowQualScore : . . .. .. . . . .... . ... ............... ............. . . .. . ..... ....................... . . ................................................. . . .. . . . . . . .... . . . .. . . ... . . . . ... ... ...
lowQualScore : 0 0 55 11 0 2 0 7777 1 444 999999999999999 5555555555555 4 4 77 7 44444 22222222222222222222222 0 3 8888888888888888888888888888888888888888888888888 0 0 22 5 0 0 0 0 7 3333 0 0 0 22 0 0 000 0 0 8 3 777 777 555
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA----AAACTCGTTGAAAAATCC-----GT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATCACATTCCTGTGAGGGCGCTATT-GAAAA-T-GT--NAA---CCTGAGAACAATA
Reference ( family-2536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTG-ATAATTAT--ATTTTTATTNTACCTCAATTTAAGTCTCTATGTTNAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA----AAACTCGTTNAAAAATCC-----GT---A-CAAG-------------------A-------------TTGATTTGACAACGCCAATGTCGTTTTATCTGTCANACGANANTNGTTGGCAAACAAATACTNAATANTAAACGTTTTGCTTCGTTTTCTNGGGAGACACGAATCNGCGCATACATGTTANTGCG---TAAGTTA-CTTTTTTCGGTANAATAAAATAAATATCACGTTCCTGTGAGGGCGCTATT-GAAAA-T-GT--AAAC--CCTGAAAACAATA
gi|1 : ATAAGTGGATAGTCATTCACTTTCATTATACCTCAGTTTAAGTCTCTTTGTTAAATTTCCCATA---ATTGATTAGTCAAT-TATTTT---------------TTATA-------------TTGACCGGCAAA-TAATAACACATGCTCGATTTTGATGCGCGTA--AAGTTCAAA-------------T---TA----AAACTC-TTGGAAAATCC-----GT---A-CAAG-------------------A-------------TTGATTTGATAATACCAAGGTAATTTTATCTGTCAGACGAGATTTGTTTACAAACAA----TCAATAATAAACGTTTTGCTTCGTTTTCTGGGAAGACACCAACCCACGCATACCTGTTACTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATCACATTCATGTGAGAGCGCTATT-GAAAG-TAGTCAAAAC--TTTTAAAACAATA
gi|10 : tatataatactttattgcctgtttttacgatacctcaatgttatcttttgtaagcCTGCGAGGGCGTTATTAAAAAA-T-GT--CAA---CCTGAGAGAAAT
gi|10 : tatgtattgacaaaatctatattctataACACG--TCCTTGCATATATGTTAGTGCG---TATGTTA-GTTTTTTCGGgatattgaccgcggcgtataagccgaaaaaactaacatacgcactaacatatatgcaaggacgtgt
gi|13 : tatgtattgacaaaatctatattctatactgcgagggcgttattaaaaaatgtcaacctgagagaaatgatattgaccgcggcgtataagTATTGT-CCTCAGTGTAAGTCTCTATGTTGAATTTACCATA---ACTGATCA
gi|14 : attcagaATTAATATCACATTCCTTTGAGGGTGATATCAGGAAA-T-GT--CAA---CCTGAGA
gi|15 : atCCTCAATTTAAATCTCTAAGTTAAATAACTCATA---CCCGATCAGTCA
gi|16 : ---------------TAATA-------------TTGACCGGCAAAATAATATCATATACGC
gi|2 : gccggTTT---------------TAATA-------------TTGACCGGCAAATTAATAACACATGCGCGATTGTGATGCGCGTA--CGGTTCAAA-------------T---TATCCGAATCACG---AAACGCTCTTTGTGT---T-TTAGT------------------A-------------TAGATTTGATAACGCCTTTGTCGTTTTATCTGTCATAGAAAACTTGTTGGCAAACAAATACTGAATACTAAACGTTTTGCTTCGTTTTCTGGGGAGACACCCATCCGCGCATACATGTTGATGCT---TAAGTTATTTTTTTTCAGTATAATAAAATAAGTATCTCATTCCTGTGAGGGCACTATT-GAAAATT-AT--GAACTATCGAAAAACAATA
gi|3 : ATAAATATCACGTTCCTGTGAGGGCGCTATT-TAAAAGT-GT--CAA---CCTGAGAACAATA
gi|3 : cAGGCACAAATCAGCATATACACGTTACTGCAGCTTAAGTTG-CACTTTTCGGTAAAATAActtttgcccgaggtaccctaaggtaaaaattatcattttttggaacattattttaccgaaaagtgcaacttaagctgcagtaacgtgtatatgctgatttgtgcctattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|4 : cataaatatcacgttcctgtgagggcgctatttaaaagtgtcaacctgagaacaatacttttgcccgaggtaccctaaggtaaaaattatcattttttggaacaTAGCTCAATTTAAGTCTCTATGTTCAATTTCCCATA---CCTGATCAGTCAAT-AATTTT---------------TAATACAGCCTGGTAGTTTTGGCTGTCAAAATAACAACACATGGGCACCTTTGATGCA-GTA--TGGTTCAAACAAGAAGGCATATT---TT----AAACTTGTTGAAAAATCT-----GTTTCA-CAAAATGCTCTTTGTGTTTTAGTA-------------TTGAATTGACAATGCCAAGGTCATTTAATCTGT--AACAGTAATTGTattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|5 : aATAAACATCACATTCCTGTGAGGGCGCTATT-GAACA-TAGT--AAA---CCTGAAAATAATActagc
gi|5 : aatactatACACGAATTTACGTATGTGTATTTTTGCG---TAAGTTA-CTTTTgtaatgactgcgacaacgccaaagtcaaaagtaacttacgcaaaaatacacatacgtaaattcgtgttaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|6 : aatactatataaacatcacattcctgtgagggcgctattgaacatagtaaacctgaaaataatagtaatgactgcgacaacgccaaagtc---------------TAATA-------------TAGACCGG-AAAATAAAAACAAATGCGCG--TTTTACGTGCGTGAGCGGTTCAAA-------------T---TA----AAA--TGTTGAAAAATTC-----AT---ATCACG-------------------AAACGCTCTTGTGTTTGATTAGACAATGCCAATGTTATTGTATCTGTCAGACGATAATAGTTGACAAACAA----TTAATA-TAAACGTTTTGCTTCGTTTTCTTGGGAGACACATATCCGtaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|7 : aATAATTG-ATAATTAT--ATTT--ATTTTCCCTCTGTTTAAGTCTCTATGATAAATTTTCCATA---ACCAATTGGTCA-T-TATTTT---------------TAATA-------------TTGGCCAGTAAAATAATAATACATGCGCGACTTTGATGCACATA--CAGTTCAAA-------------T---
gi|8 : accaggtattttgagatattgcagccagtcaaagtattttggatgactacataTTATACCCAAATTAAAGTCGCCATGTTTAATTCTCCATG---CCCGATCAGTCAATGTTTTTTTTTTATATTGCCAGGTAATA-------------TTGACCGGCAAAATAATAACACA------A----GAAGT-CGT-----GTT-----------------T---T-----AAACTTGTTGAAAAATCT-----Ga
gi|9 : TTTTATTTTACCTCAATTTAAGTCACTGTGTTAAATTCCTCGTATTACCCGATC---TA---TACTGTACGA-----------TACTA-------------TTGA--------------ACACATGCGCGACTTGGATACGCGTA--AAGTTCAAA-------------CAAGTA----GTACTCATTTAAAAATCC-----GT---aatcacaaaacgttctttgttcctaacttagtctattgatttgacaaagt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ACATTTCTGTTAGGGTGTTATTTAAAATTGTCAACCTGTGAAAAATAATGTTGACCATGGCAATTGA
Unaligned ( gi|12 ): ATCTGTTTCACGTAACGTTCTTAATGTTTTAGTATTGATTTGACAAAGTCAAGGTAACTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 2222 1111 111 444444444444444 2222222222222 11111 666666666666666666666666666666 333333333333333333333333333333333333333333 2222 2 11 111 1111 1 111 1111111
lowQualScore : 1 5 4444 1 3 0 0000 0 444 111111111111111 7777777777777 1 3 66 1 11111 000000000000000000000000000000 99 5 1 777777777777777777777777777777777777777777 1 0 2 0 1 1 8888 1 6 11 4 1 444 8 1 6 4444 3 777 1 6666666
lowQualScore : . . .... . . . .... . ... ............... ............. . . .. . ..... .............................. .. . . .......................................... . . . . . . .... . . .. . . ... . . . .... . ... . .......
lowQualScore : 0 0 0000 0 2 3 7777 1 444 999999999999999 5555555555555 4 4 77 7 44444 777777777777777777777777777777 22 2 7 555555555555555555555555555555555555555555 0 2 5 2 0 0 3333 0 7 22 6 0 000 0 7 7 2222 3 777 0 0000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAA---C---CTGAGAACAATA
Reference ( family-2536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTNAA---C---CTGAGAACAATA
gi|1 : ATAAGTGGATAGTCATTCACTTTCATTATACCTCAGTTTAAGTCTCTTTGTTAAATTTCCCATA---ATTGATTAGTCAAT-TATTTT---------------TTATA-------------TTGACCGGCAAA-TAATAACACATGCTCGATTTTGATGCGCGTA--AAGTTCAAA-------------T---TA-----------AAAC--TC-TTGGAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGATAATACCAAGGTAATTTTATCTGTCAGACGAGATTTGTTTACAAACAA----TCAATAATAAACGTTTTGCTTCGTTTTCTGGGAAGACACCAACCCACGCATACCTGTTACTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----ATGTGAGAGCGCTATT-GAAAG-TAGTCAAAACT---TTTAAAACAATA
gi|10 : tatataatactttattgcctgtttttacgatacctcaatgttatcttttgtaagcACAAA-ATCTATATTCTATACTGCGAGGGCGTTATTAAAAAA-T-GTCAA---C---CTGAGAGAAAT
gi|10 : tatgtattgACACG--TCCTTGCATATATGTTAGTGCG---TATGTTA-GTTTTTTCGGgatattgaccgcggcgtataagccgaaaaaactaacatacgcactaacatatatgcaaggacgtgt
gi|13 : tatgtattgacaaaatctatattctatactgcgagggcgttattaaaaaatgtcaacctgagagaaatgatattgaccgcggcgtataagTATTGT-CCTCAGTGTAAGTCTCTATGTTGAATTTACCATA---ACTGATCA
gi|14 : attcagaATTAATATC-ACATTC----CTTTGAGGGTGATATCAGGAAA-T-GTCAA---C---CTGAGA
gi|15 : atCCTCAATTTAAATCTCTAAGTTAAATAACTCATA---CCCGATCAGTCA
gi|16 : ---------------TAATA-------------TTGACCGGCAAAATAATATCATATACGC
gi|2 : gccggTTT---------------TAATA-------------TTGACCGGCAAATTAATAACACATGCGCGATTGTGATGCGCGTA--CGGTTCAAA-------------T---TATCCGAATCACGAAACGCTCTTTG-------TGT---T-TTAGT------------------A-------------TAGATTTGATAACGCCTTTGTCGTTTTATCTGTCATAGAAAACTTGTTGGCAAACAAATACTGAATACTAAACGTTTTGCTTCGTTTTCTGGGGAGACACCCATCCGCGCATACATGTTGATGCT---TAAGTTATTTTTTTTCAGTATAATAAAATAAGTATC-TCATTC----CTGTGAGGGCACTATT-GAAAATT-ATGAA---CTATCGAAAAACAATA
gi|3 : ATAAATATC-ACGTTC----CTGTGAGGGCGCTATT-TAAAAGT-GTCAA---C---CTGAGAACAATA
gi|3 : cAGGCACAAATCAGCATATACACGTTACTGCAGCTTAAGTTG-CACTTTTCGGTAAAATAActtttgcccgaggtaccctaaggtaaaaattatcattttttggaacattattttaccgaaaagtgcaacttaagctgcagtaacgtgtatatgctgatttgtgcctattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|4 : cataaatatcacgttcctgtgagggcgctatttaaaagtgtcaacctgagaacaatacttttgcccgaggtaccctaaggtaaaaattatcattttttggaacaTAGCTCAATTTAAGTCTCTATGTTCAATTTCCCATA---CCTGATCAGTCAAT-AATTTT---------------TAATACAGCCTGGTAGTTTTGGCTGTCAAAATAACAACACATGGGCACCTTTGATGCA-GTA--TGGTTCAAACAAGAAGGCATATT---TT-----------AAAC--TTGTTGAAAAATCTGTTTCA-CAAAATGCTCTTTGTGTTTTAGTA-------------TTGAATTGACAATGCCAAGGTCATTTAATCTGT--AACAGTAATTGTattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|5 : aATAAACATC-ACATTC----CTGTGAGGGCGCTATT-GAACA-TAGTAAA---C---CTGAAAATAATActagc
gi|5 : aatactatACACGAATTTACGTATGTGTATTTTTGCG---TAAGTTA-CTTTTgtaatgactgcgacaacgccaaagtcaaaagtaacttacgcaaaaatacacatacgtaaattcgtgttaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|6 : aatactatataaacatcacattcctgtgagggcgctattgaacatagtaaacctgaaaataatagtaatgactgcgacaacgccaaagtc---------------TAATA-------------TAGACCGG-AAAATAAAAACAAATGCGCG--TTTTACGTGCGTGAGCGGTTCAAA-------------T---TA-----------AAA----TGTTGAAAAATTCAT---ATCACG-------------------AAACGCTCTTGTGTTTGATTAGACAATGCCAATGTTATTGTATCTGTCAGACGATAATAGTTGACAAACAA----TTAATA-TAAACGTTTTGCTTCGTTTTCTTGGGAGACACATATCCGtaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|7 : aATAATTG-ATAATTAT--A--TTTATTTTCCCTCTGTTTAAGTCTCTATGATAAATTTTCCATA---ACCAATTGGTCA-T-TATTTT---------------TAATA-------------TTGGCCAGTAAAATAATAATACATGCGCGACTTTGATGCACATA--CAGTTCAAA-------------T---
gi|8 : accaggtattttgagatattgcagccagtcaaagtattttggatgactacataTTATACCCAAATTAAAGTCGCCATGTTTAATTCTCCATG---CCCGATCAGTCAATGTTTTTTTTTTATATTGCCAGGTAATA-------------TTGACCGGCAAAATAATAACACA------A----GAAGT-CGT-----GTT-----------------T---T------------AAAC--TTGTTGAAAAATCTGa
gi|9 : TTTTATTTTACCTCAATTTAAGTCACTGTGTTAAATTCCTCGTATTACCCGATC---TA---TACTGTACGA-----------TACTA-------------TTGA--------------ACACATGCGCGACTTGGATACGCGTA--AAGTTCAAA-------------CAAGTA-----------GTAC--TCATTTAAAAATCCGT---aatcacaaaacgttctttgttcctaacttagtctattgatttgacaaagt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ACATTTCTGTTAGGGTGTTATTTAAAATTGTCAACCTGTGAAAAATAATGTTGACCATGGCAATTGA
Unaligned ( gi|12 ): ATCTGTTTCACGTAACGTTCTTAATGTTTTAGTATTGATTTGACAAAGTCAAGGTAACTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 2222 1111 111 444444444444444 2222222222222 11111 666666666666666666666666666666 333333333333333333333333333333333333333333 2222 2 11 111 1111 222 1111111
lowQualScore : 1 5 4444 1 3 0 0000 0 444 111111111111111 7777777777777 1 3 66 1 11111 000000000000000000000000000000 99 5 1 777777777777777777777777777777777777777777 1 0 2 0 1 1 8888 1 6 11 4 1 444 8 1 5 2222 5 555 2222222 1
lowQualScore : . . .... . . . .... . ... ............... ............. . . .. . ..... .............................. .. . . .......................................... . . . . . . .... . . .. . . ... . . . .... . ... ....... .
lowQualScore : 0 0 0000 0 2 3 7777 1 444 999999999999999 5555555555555 4 4 77 7 44444 777777777777777777777777777777 22 2 7 555555555555555555555555555555555555555555 0 2 5 2 0 0 3333 0 7 22 6 0 000 0 7 7 1111 7 333 3333333 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAA---C---CTGAGAACAATA
Reference ( family-2536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAA---C---CTGAGAACAATA
gi|1 : ATAAGTGGATAGTCATTCACTTTCATTATACCTCAGTTTAAGTCTCTTTGTTAAATTTCCCATA---ATTGATTAGTCAAT-TATTTT---------------TTATA-------------TTGACCGGCAAA-TAATAACACATGCTCGATTTTGATGCGCGTA--AAGTTCAAA-------------T---TA-----------AAAC--TC-TTGGAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGATAATACCAAGGTAATTTTATCTGTCAGACGAGATTTGTTTACAAACAA----TCAATAATAAACGTTTTGCTTCGTTTTCTGGGAAGACACCAACCCACGCATACCTGTTACTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----ATGTGAGAGCGCTATT-GAAAG-TAGTCAAAACT---TTTAAAACAATA
gi|10 : tatataatactttattgcctgtttttacgatacctcaatgttatcttttgtaagcACAAA-ATCTATATTCTATACTGCGAGGGCGTTATT-AAAAAAT-GTCAA---C---CTGAGAGAAAT
gi|10 : tatgtattgACACG--TCCTTGCATATATGTTAGTGCG---TATGTTA-GTTTTTTCGGgatattgaccgcggcgtataagccgaaaaaactaacatacgcactaacatatatgcaaggacgtgt
gi|11 : tatgtattgacaaaatctatattctatactgcgagggcgttattaaaaaatgtcaacctgagagaaatgatattgaccgcggcgtataag-ACATTT----CTGTTAGGGTGTTATT-TAAAA-TTGTCAA---C---CTGTGAAAAATA
gi|13 : TATTGT-CCTCAGTGTAAGTCTCTATGTTGAATTTACCATA---ACTGATCAatgttgaccatggcaattga
gi|14 : attcagaATTAATATC-ACATTC----CTTTGAGGGTGATATCAGGAAA-T-GTCAA---C---CTGAGA
gi|15 : atCCTCAATTTAAATCTCTAAGTTAAATAACTCATA---CCCGATCAGTCA
gi|16 : ---------------TAATA-------------TTGACCGGCAAAATAATATCATATACGC
gi|2 : gccggTTT---------------TAATA-------------TTGACCGGCAAATTAATAACACATGCGCGATTGTGATGCGCGTA--CGGTTCAAA-------------T---TATCCGAATCACGAAACGCTCTTTG-------TGT---T-TTAGT------------------A-------------TAGATTTGATAACGCCTTTGTCGTTTTATCTGTCATAGAAAACTTGTTGGCAAACAAATACTGAATACTAAACGTTTTGCTTCGTTTTCTGGGGAGACACCCATCCGCGCATACATGTTGATGCT---TAAGTTATTTTTTTTCAGTATAATAAAATAAGTATC-TCATTC----CTGTGAGGGCACTATT-GAAAATT-ATGAA---CTATCGAAAAACAATA
gi|3 : ATAAATATC-ACGTTC----CTGTGAGGGCGCTATT-TAAAAGT-GTCAA---C---CTGAGAACAATA
gi|3 : cAGGCACAAATCAGCATATACACGTTACTGCAGCTTAAGTTG-CACTTTTCGGTAAAATAActtttgcccgaggtaccctaaggtaaaaattatcattttttggaacattattttaccgaaaagtgcaacttaagctgcagtaacgtgtatatgctgatttgtgcctattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|4 : cataaatatcacgttcctgtgagggcgctatttaaaagtgtcaacctgagaacaatacttttgcccgaggtaccctaaggtaaaaattatcattttttggaacaTAGCTCAATTTAAGTCTCTATGTTCAATTTCCCATA---CCTGATCAGTCAAT-AATTTT---------------TAATACAGCCTGGTAGTTTTGGCTGTCAAAATAACAACACATGGGCACCTTTGATGCA-GTA--TGGTTCAAACAAGAAGGCATATT---TT-----------AAAC--TTGTTGAAAAATCTGTTTCA-CAAAATGCTCTTTGTGTTTTAGTA-------------TTGAATTGACAATGCCAAGGTCATTTAATCTGT--AACAGTAATTGTattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|5 : aATAAACATC-ACATTC----CTGTGAGGGCGCTATT-GAACA-TAGTAAA---C---CTGAAAATAATActagc
gi|5 : aatactatACACGAATTTACGTATGTGTATTTTTGCG---TAAGTTA-CTTTTgtaatgactgcgacaacgccaaagtcaaaagtaacttacgcaaaaatacacatacgtaaattcgtgttaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|6 : aatactatataaacatcacattcctgtgagggcgctattgaacatagtaaacctgaaaataatagtaatgactgcgacaacgccaaagtc---------------TAATA-------------TAGACCGG-AAAATAAAAACAAATGCGCG--TTTTACGTGCGTGAGCGGTTCAAA-------------T---TA-----------AAA----TGTTGAAAAATTCAT---ATCACG-------------------AAACGCTCTTGTGTTTGATTAGACAATGCCAATGTTATTGTATCTGTCAGACGATAATAGTTGACAAACAA----TTAATA-TAAACGTTTTGCTTCGTTTTCTTGGGAGACACATATCCGtaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|7 : aATAATTG-ATAATTAT--A--TTTATTTTCCCTCTGTTTAAGTCTCTATGATAAATTTTCCATA---ACCAATTGGTCA-T-TATTTT---------------TAATA-------------TTGGCCAGTAAAATAATAATACATGCGCGACTTTGATGCACATA--CAGTTCAAA-------------T---
gi|8 : accaggtattttgagatattgcagccagtcaaagtattttggatgactacataTTATACCCAAATTAAAGTCGCCATGTTTAATTCTCCATG---CCCGATCAGTCAATGTTTTTTTTTTATATTGCCAGGTAATA-------------TTGACCGGCAAAATAATAACACA------A----GAAGT-CGT-----GTT-----------------T---T------------AAAC--TTGTTGAAAAATCTGa
gi|9 : TTTTATTTTACCTCAATTTAAGTCACTGTGTTAAATTCCTCGTATTACCCGATC---TA---TACTGTACGA-----------TACTA-------------TTGA--------------ACACATGCGCGACTTGGATACGCGTA--AAGTTCAAA-------------CAAGTA-----------GTAC--TCATTTAAAAATCCGT---aatcacaaaacgttctttgttcctaacttagtctattgatttgacaaagt
blockSeqs : T . A G A TTAC ATG TTTTATATTGCCAGG CAGCCTGGTAGTT C A AT G GAGCG CAAGAAGGCATATTTT GC T A TTCACAAAATGCTCTTTGTGTTTTAGTA T C A C ATAC G C CC A G GCT T T T TATA A AT CTAT A
blockSeqs : T C A AT ACGA . C T CC A ACG TTATCCGAATCACG . G A ATCACGAAACGCTCTTGTGT G C T A . T . AA A A . . T . . . TT C A
blockSeqs : A A C T . . C A AC G ATG CAAGTA . G A TTTAGTA T . T A GA A C . . T . . . TT C C
blockSeqs : T A C . . . T A AC A ACA TTA . G A AT G T . . C . . . GT C C
blockSeqs : . A . . C A A G AAA TT . A . G . . . . TA C T
blockSeqs : C . . . A . . . . . . T C
blockSeqs : . . . .
blockSeqCons : T** C******
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAAT-TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAA---C---CTGAGAACAATA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTCAT--TATTTT---------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAAC------CTGAGAACAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCTGTTTCACGTAACGTTCTTAATGTTTTAGTATTGATTTGACAAAGTCAAGGTAACTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 2222 1111 44444444444444444 2222222222222 11111 666666666666666666666666666666 333333333333333333333333333333333333333333 2222 2 11 111 1111 222 1111111
lowQualScore : 1 5 4444 1 3 0 0000 0 6 888 55555555555555555 7777777777777 1 3 66 1 11111 000000000000000000000000000000 99 5 1 777777777777777777777777777777777777777777 1 0 2 0 1 1 8888 1 6 11 4 1 444 8 1 5 2222 5 555 2222222 1
lowQualScore : . . .... . . . .... . . ... ................. ............. . . .. . ..... .............................. .. . . .......................................... . . . . . . .... . . .. . . ... . . . .... . ... ....... .
lowQualScore : 0 0 0000 0 2 3 7777 1 7 999 66666666666666666 5555555555555 4 4 77 7 44444 777777777777777777777777777777 22 2 7 555555555555555555555555555555555555555555 0 2 5 2 0 0 3333 0 7 22 6 0 000 0 7 7 1111 7 333 3333333 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTC-A-TTATTTT-----------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAA---C---CTGAGAACAATA
Reference ( family-2536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAANTGGATAGTCATTCACTTTTATTNTACCTCAGTTTAAGTCTCTATGTTAAATTTCCCATA---CCCGATCAGTC-A-TTATTTT-----------------TAATA-------------TTGACCGGCAAAATAATAACACATGCGCGACTTTGATGCGCGTA--CGGTTCAAA-------------T---TA-----------AAAC--TCGTTGAAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGACAATGCCAANGTCATTTTATCTGTCAGACGANANTTGTTGACAAACAA----TNAATA-TAAACGTTTTGCTTCGTTTTCTGGGGAGACACGAATCCGCGCATACGTGTTANTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----CTGTGAGGGCGCTATT-GAAAA-T-GTCAA---C---CTGAGAACAATA
gi|1 : ATAAGTGGATAGTCATTCACTTTCATTATACCTCAGTTTAAGTCTCTTTGTTAAATTTCCCATA---ATTGATTAGTC-AATTATTTT-----------------TTATA-------------TTGACCGGCAAA-TAATAACACATGCTCGATTTTGATGCGCGTA--AAGTTCAAA-------------T---TA-----------AAAC--TC-TTGGAAAATCCGT---A-CAAG-------------------A-------------TTGATTTGATAATACCAAGGTAATTTTATCTGTCAGACGAGATTTGTTTACAAACAA----TCAATAATAAACGTTTTGCTTCGTTTTCTGGGAAGACACCAACCCACGCATACCTGTTACTGCG---TAAGTTA-CTTTTTTCGGTAAAATAAAATAAATATC-ACATTC----ATGTGAGAGCGCTATT-GAAAG-TAGTCAAAACT---TTTAAAACAATA
gi|10 : tatataatactttattgcctgtttttacgatacctcaatgttatcttttgtaagcACAAA-ATCTATATTCTATACTGCGAGGGCGTTATT-AAAAAAT-GTCAA---C---CTGAGAGAAAT
gi|10 : tatgtattgACACG--TCCTTGCATATATGTTAGTGCG---TATGTTA-GTTTTTTCGGgatattgaccgcggcgtataagccgaaaaaactaacatacgcactaacatatatgcaaggacgtgt
gi|11 : tatgtattgacaaaatctatattctatactgcgagggcgttattaaaaaatgtcaacctgagagaaatgatattgaccgcggcgtataag-ACATTT----CTGTTAGGGTGTTATT-TAAAA-TTGTCAA---C---CTGTGAAAAATA
gi|13 : TATTGT-CCTCAGTGTAAGTCTCTATGTTGAATTTACCATA---ACTGATCAatgttgaccatggcaattga
gi|14 : attcagaATTAATATC-ACATTC----CTTTGAGGGTGATATCAGGAAA-T-GTCAA---C---CTGAGA
gi|15 : atCCTCAATTTAAATCTCTAAGTTAAATAACTCATA---CCCGATCAGTC-A-
gi|16 : -----------------TAATA-------------TTGACCGGCAAAATAATATCATATACGC
gi|2 : gccggTTT-----------------TAATA-------------TTGACCGGCAAATTAATAACACATGCGCGATTGTGATGCGCGTA--CGGTTCAAA-------------T---TATCCGAATCACGAAACGCTCTTTG-------TGT---T-TTAGT------------------A-------------TAGATTTGATAACGCCTTTGTCGTTTTATCTGTCATAGAAAACTTGTTGGCAAACAAATACTGAATACTAAACGTTTTGCTTCGTTTTCTGGGGAGACACCCATCCGCGCATACATGTTGATGCT---TAAGTTATTTTTTTTCAGTATAATAAAATAAGTATC-TCATTC----CTGTGAGGGCACTATT-GAAAATT-ATGAA---CTATCGAAAAACAATA
gi|3 : ATAAATATC-ACGTTC----CTGTGAGGGCGCTATT-TAAAAGT-GTCAA---C---CTGAGAACAATA
gi|3 : cAGGCACAAATCAGCATATACACGTTACTGCAGCTTAAGTTG-CACTTTTCGGTAAAATAActtttgcccgaggtaccctaaggtaaaaattatcattttttggaacattattttaccgaaaagtgcaacttaagctgcagtaacgtgtatatgctgatttgtgcctattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|4 : cataaatatcacgttcctgtgagggcgctatttaaaagtgtcaacctgagaacaatacttttgcccgaggtaccctaaggtaaaaattatcattttttggaacaTAGCTCAATTTAAGTCTCTATGTTCAATTTCCCATA---CCTGATCAGTCAA-TAATTTT-----------------TAATACAGCCTGGTAGTTTTGGCTGTCAAAATAACAACACATGGGCACCTTTGATGCA-GTA--TGGTTCAAACAAGAAGGCATATT---TT-----------AAAC--TTGTTGAAAAATCTGTTTCA-CAAAATGCTCTTTGTGTTTTAGTA-------------TTGAATTGACAATGCCAAGGTCATTTAATCTGT--AACAGTAATTGTattatttaaagcacatgtttcagccaaatgttattttttttttgtattttgttaacacaattagattatgtattattggaatgaagggtatgtataggaatttacgtgcaaatcatc
gi|5 : aATAAACATC-ACATTC----CTGTGAGGGCGCTATT-GAACA-TAGTAAA---C---CTGAAAATAATActagc
gi|5 : aatactatACACGAATTTACGTATGTGTATTTTTGCG---TAAGTTA-CTTTTgtaatgactgcgacaacgccaaagtcaaaagtaacttacgcaaaaatacacatacgtaaattcgtgttaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|6 : aatactatataaacatcacattcctgtgagggcgctattgaacatagtaaacctgaaaataatagtaatgactgcgacaacgccaaagtc-----------------TAATA-------------TAGACCGG-AAAATAAAAACAAATGCGCG--TTTTACGTGCGTGAGCGGTTCAAA-------------T---TA-----------AAA----TGTTGAAAAATTCAT---ATCACG-------------------AAACGCTCTTGTGTTTGATTAGACAATGCCAATGTTATTGTATCTGTCAGACGATAATAGTTGACAAACAA----TTAATA-TAAACGTTTTGCTTCGTTTTCTTGGGAGACACATATCCGtaactgtttggggcgcttgttttaacttggttcacccaaatttgttgtattttgtcacaaaaattagattttgtattagtaaaaatacttaaattgaatgatc
gi|7 : aATAATTG-ATAATTAT--A--TTTATTTTCCCTCTGTTTAAGTCTCTATGATAAATTTTCCATA---ACCAATTGGTC-A-TTATTTT-----------------TAATA-------------TTGGCCAGTAAAATAATAATACATGCGCGACTTTGATGCACATA--CAGTTCAAA-------------T---
gi|8 : accaggtattttgagatattgcagccagtcaaagtattttggatgactacataTTATACCCAAATTAAAGTCGCCATGTTTAATTCTCCATG---CCCGATCAGTC-A-ATGTTTTTTTTTTATATTGCCAGGTAATA-------------TTGACCGGCAAAATAATAACACA------A----GAAGT-CGT-----GTT-----------------T---T------------AAAC--TTGTTGAAAAATCTGa
gi|9 : TTTTATTTTACCTCAATTTAAGTCACTGTGTTAAATTCCTCGTATTACCCGATC---T-A-T-ACTGTACGA-------------TACTA-------------TTGA--------------ACACATGCGCGACTTGGATACGCGTA--AAGTTCAAA-------------CAAGTA-----------GTAC--TCATTTAAAAATCCGT---aatcacaaaacgttctttgttcctaacttagtctattgatttgacaaagt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATCTGTTTCACGTAACGTTCTTAATGTTTTAGTATTGATTTGACAAAGTCAAGGTAACTT