lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111111111 1111111111111111111111111111111111111111111111111111 111111111 11111111 111 2222222 2222 5555555555555555 11 55555555555555555 22222 88888888888888888888888888888888888888888888888888888888888888888888 111 11 1 22222 222 11
lowQualScore : 7 1 0 666666666666 0000000000000000000000000000000000000000000000000000 6 7777 333333333 4 3 6 33 66666666 0 555 2 0000000 7 6666 3333333333333333 3 3 4 4 66 888 1 00000000000000000 8 11111 00000000000000000000000000000000000000000000000000000000000000000000 3 888 4 777 22 777 55 0 8 00 0 3 22222 222 0 9 2 55 3
lowQualScore : . . . ............ .................................................... . .... ......... . . . .. ........ . ... . ....... . .... ................ . . . . .. ... . ................. . ..... .................................................................... . ... . ... .. ... .. . . .. . . ..... ... . . . .. .
lowQualScore : 1 6 7 666666666666 0000000000000000000000000000000000000000000000000000 5 1111 333333333 6 6 0 55 55555555 5 888 6 1111111 8 0000 0000000000000000 1 5 5 0 00 777 0 33333333333333333 8 66666 33333333333333333333333333333333333333333333333333333333333333333333 9 000 0 000 66 555 22 8 6 22 2 3 11111 999 7 0 9 22 7
consensus : ATNAACTCTTTCGTGCTCACTTACTTATTT------CA---ATAT---------C----------G-C--------------C--------------AGANCA----AT---------TTCCTAATCCGTAAC----T--TGTTTGCTGAACGATGTCC--GC--CATTTT--CTAGCCAATAAG---AGATT-TG----ATGTATNAAGCGCGCTGATTGGTCC-TAAAATACAC-C-CCC-CGANGNAC-NC-----CCAATCAGCGCGCTTC-N---TACA-A-AGACAATG-----T-TTTNT---GGA-TATTTGGA-ATCTNCAGTCAAATGTAATGG--CGGACATCGTTCAGCAAACA-A---GTTGCGGAGTAGGAAATTG--NTCT-GATCAGCTGTTCTAGATGATATTG-AAATAAG----TAAGTGAGCACGAAAGAGTTNATTTGNTGT
Reference ( gi|1 ) : ATTAATTATTTCGTGCTCACTTACTTATTT------CA---TTAT---------C----------G-C--------------C--------------AGAGCA----AT---------TTTTTACTTCGCAAC----T--TATTTGCAGAACGATGTCA--GC--CATGTT--ACAGCCAATAAA---AAATT-TG----ATGTATCAAGCGTGCTGATTGGTTC-TAAATAACAC-C-CCC-CAAAATAC-CC-----CCAATCAGCGCCCTTC-T---TACA-A-AGACAATG-----T-TTTGT---GGA-TATTTGGATATCTTCAGTCACATGTAATGG--TGGACGTCGTTCAGTTAACA-A---GTTGCGGAGTAGAAAATTG--CTCT-GATCAGCTATTCTAGGCGATAATG-AAATAAG----AAAGAGTGCACGAAATAATCAATTTGATGT
gi|2 : ATTAATTCTTTCGTGCTCACTTACTTATTT-------A---TTAT---------C----------G-CCGAGAACAGCTGATC--------------AGAGCA----AT---------TTTCTACTCTTCAAC----T--TGTTTGCTGAACGATGTCC--AC--CA--TT--ACA
gi|7 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaaATTAATTCTTTTGTACTCACTTACTTATTTT-----CA---TTAT---------C----------G-C--------------CTAGAACAGCTGATCAGAGCA----AT---------TTTCTTCTCTGCAAC----T--TGTTTGCTGAACGATGTCC--AC--CATttgatgttg
gi|4 : cccaatcagcgccattcttacaaagacaatgttttctggatatttggatatcttcagtcaaatgttATGAACTCTTTCATGCTCACTTATTTATTT------CA---AAAT---------C----------A-T--------------CTAAACAGATCATA-AGACCA----AT---------GTTCTAACCCATAATGGGTT--TATT-----AACGATA-CA---CTGCATATTCCATAGTCAATAAGT--AGATT-------ATGTATCAAGCGCGCTGATTGGttgat
gi|3 : agatcataagaccaatgttctaacccataatgggtttattaacgatacactgcatattccatagtcaataagtagattatgtatcaagcgcgctgattggtcctaaaatacacttccccgatgaaggcATGAACTCTTTCATGCTCACTAACTTATTT------CA---ATATAATCTAAAACA---------G-C--------------TCATA----------AGACCA----AT---------TTCCTAATCCATGAT----T--TGTTTATTGACC-ATA-CACTGC--AATTTT--TTAGCCAATAAGT--AGATT-------ATGTATAAAGCGCGCTGATTGGTCC-T--------T-C-CTC-GGGTGTAT-TTTAGGACCAATCAACGCGCTTCATGCATACA-ATAGAAAATGGCAAAC-TTTGTTAAAAA-TATTTGttgctgt
gi|8 : atattatctaaaacagctgttcacaagaccaatttcctaatctgtaaATAAACTCTTTCATGCTCACTTACCTATAT------CAGTTTCAT---------CTTGAACA---G-CTTAT----------C--------------AGATCA----AT---------TTCTTTCTCCACAAC----T--TGTTTGCTGAACGTTGTTT--GC--CTTTTT--GGGG--GGTTAG---ATTTC-TGTATTATGTATGAAGCGCGCTGATTGGTTC-TAttgttg
gi|12 : aaATCAATTATTTCATGCTCACTTACTTATAT------CA---ATAT---------CATCTAGCTCAG-CTGAT----------C--------------AGAGCA----AT---------TT
gi|5 : ctggATGAACTCTTTCATGCTTATTTATTTATATAAAAAACA---GT-T---------C----------A-A--------------G--------------AGACCA----AT---------TACCTAATCCGTAAC----A--AATATGTTGAACAAAGTCT--GC--CATTTT----------TGTACTTGAATTCTGTCTTATGTATGGA-CGCGCTGATTGGTCC-TAAAAAACAC-T-CCCACGACGCAG-GA-----CCAATCTGCGCACTCA-A---TACATA-AGCCA--------T-TTATT---GGC-CA---GGAAAT-----GCCA---------G--TGAA--TC-TTCAGTAAACA-A----TTATGGTTTAGGAACTTG--TTCT-ttgttgt
gi|6 : tcaaTTTCGTGCTGACTTACTTATTT------CA---ATAT---------C----------ATC--------------C--------------AGAACAGCTGATAAGACCAAATACCTACTCCATAAT----T--TGTGTATTGAA-GATTCTAT-GC--CATTTC--CTGGCCAATAGT---AGATT-------ATGAATCAAGCGCACTGATTGGTCC-caag
gi|14 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacgttttatgcatgaagagcgctgattggtcctaaattacacccacccgaggacTTTTATGCTCACTTACTTATTT------CA---aagt
gi|17 : ttggtcttttgagctgttttagatgattcCTCACATACTTATTT------CA---ATAT---------C----------ATC--------------C--------------AGAACgacttcatttgtt
gi|4 : tggtctcatcagccAT---------C----------A-T--------------A--------------AGACCA----AT---------GTTCTAACCCATAATGGGTT--TATT-----AACGATA-CA---CTGCATATTCCATAGTCAATAAGT--AGATT-------ATGTATCAAGCGCGCTGATTGGTCC-TAAAATACACTT-CCC-CGATGAAG-GC-----CCAATCAGCGCGCTTG-A---TAC------ATAATC-----TACTTAT---TGACTA--TGGA-ATATGCAG-----TGTA------------TCGTT-AATAAACC-C---ATTATGGGTTAGAACATTG--GTCT-TATGATCTGTT-TAGATGATTTTG-AAATAAA----TAAGTGAGCATGAAAGAGTTCATTTGCTGTggtttatttgttgtt
gi|3 : agT---------C----------A-C--------------A--------------AGACCA----AT---------TTCCTAATCTGTAAC----AAATATTTTTA--ACAAAGTTT--GC--CATTTT------CTA------------T-TGT---ATGCATGAAGCGCGTTGATTGGTCC-TAAAATACAC-C-CGA-GGAAGGAC-C--------AATCAGCGCGCTTT-A---TACA-T-AATC--TA-----C-TTATT---GGC-TA---AAAAAT-TGCAGT-----GTA------TGG-------TCAATAAACA-A---ATCATGGATTAGGAAATTG--GTCT-TATGAGCTGTTTTAGATTATATTG-AAATAAG----TTAGTGAGCATGAAAGAGTTCATTTGTTG
gi|18 : atattatctaaaacagctgt--------------C--------------AGAACA----AT---------TTTCTACTCCGAAAC----T--TGTTTGCTGAACGATGTCC--GC--CATG
gi|5 : --------------AGAACA----AG---------TTCCTAAACCATAA-----T--TGTTTACTGAA-GAT-TCACTGG--CATTTC--CTGGCCAATAAA---TGGCT-T-----ATGTATTGAGTGCGCAGATTGGTCC-Tat
gi|16 : tcaaatgaactctttcatgcttatttatttatataaaaaacagttcaagagaccaattacctaatccgtaacaaatatgttgaacaaagtctgccatttttgtacttgaattctgtcttatgtatggacgcgctgattggtcctaaaaaacactcccacgacgcGAACGATGTCC--AC--CATGTT--CCAGCCAATAAA---AATAT-TG----ATGTATCAAGCGTGCAGATTGGTCC-caag
gi|2 : tAACGATGTCC--GC--CATGTT--CCAGCCAATAAA---AAGAT-TG----ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCCC-CGCCC-C-----AC-CT-----CCAA
gi|13 : TGTCC--AT--CATTTT--CTAGCCAATAAG---TAGTT-------ATGTACTGAGTGCACTGACTAGaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|6 : TT-TT----ATGCATGAAGAGCGCTGATTGGTCC-TAAATTACAC-C-CAC-CCGAGGACGGA-----CCAATCAGTGCGCTTaaaactgttcaaatggatta
gi|2 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacgAAAATAT-CC-----CCAATCAGCGCCATCC-T---TACA-A-AGACAATG-----T-TTTCT---TGA-TATTTGGATATCTTCGGTCAAATGTAATGG--TGGACATCGTTCAGCAAACA-A---GTTGAAGAGTAGAAAATTG--CTCT-GATCAGCTGTTCTCGGCGATAAT--AAATAAG----TAAGTGAGCACGAAAGAATTAATTTGATGTgattcataatctactattggccaggaaatggcatagaatcttcaatacacaaattatggagtaggtatttggtcttatcagctgttctggatgatattgaaataagtaagtcagcacgaaaaagt
gi|7 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaC-----CCAATCAGCGCCATTC-T---TACA-A-AGACAATG-----T-TTTCT---GGA-TATTTGGATATCTTCAGTCAAATGTTATGG--TGGACATCGTTCAGCAAACA-A---GTTGCAGAGAAGAAAATTG--CTCT-GATCAGCTGTTCTAGGCGATAATGAAAATAAG----TAAGTGAGTACAAAAGAATTAATTTGAtg
gi|8 : -----CCAATCAGCGCGCTTC-A---TACATA-ATACA-------------------GA-AATCTA---ACCCCC---CAAA---AA-GG--CAAACAACGTTCAGCAAACA-A---GTTGTGGAGAAAGAAATTG--ATCT-GATAAGCTGTTCAAGATGAAACTG-ATATAGG----TAAGTGAGCATGAAAGAGTTTATTT
gi|6 : AATGGCATAGA-ATC-TTCAATACACA-A---ATTATGGAGTAGGTATTTG--GTCT-TATCAGCTGTTCTGGATGATATTG-AAATAAG----TAAGTCAGCACGAAAttcta
gi|5 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacgttttatgcatgaagagcgctgattggtcctaaattacacccacccgaggacggaccaatcagtgcgcttgattcataatctactattggccaggaAATGG--CAGACTTTGTTCA----ACATATTTGTTACGGATTAGGTAATTGGTCTCTTGAACTGTT-TTTTAT---ATAAAT-AAATAAGCATGAAAGAGTTCAaagt
gi|18 : tcaaaATGG--CGGACATCGTTCAGCAAACA-A---GTTTCGGAGTAGAAAATTG--TTCT-GATtttgtacttgaattctgtcttatgtatggacgcgctgattggtcctaaaaaacactcccacgacgcaggaccaatctgcgcactcaatacataagccatttattggccaggaaatgccagtgaatcttcagtaaacaattatggtttaggaacttgttctcaag
gi|9 : cAAAA-A---GTTGTTGGGTAAGAAATTG--CTCT-GATTAGCTGTTC
gi|10 : tttgaacaTAGAAATTTG--CTCT-CAGCAACTGTTCTTGATGATATCG-AAATAgatattagttttatacaaggaagtgagcttgaaggagatctattgttgttga
gi|12 : tGGAAATTG--CTCT-GATCAGCTGAGCTAGATGATATTG-ATATAAG----TAAGTGAGCATGAAATAATTGATTTGTTGTcataggtgataatgaacgaattcatttgttgtt
gi|11 : ctAAATTG--GTC--------CCGTTTTAGATGACATTG-AAATAAG----TAAGTAAGCATGAACTATTC-ATTTGA
gi|14 : acaaaatatattatgTTG--GTCT-TTTGAGCTGTTTTAGATGATTCTG-AAATAAG----TAAGTGAGCATAAAAGACTTCATTTG
gi|17 : TG--GTCT-CATCAGCCGTTCTGGATGATATTG-AAATAAG----tt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): CTGTTCTAGGCGAAATTGATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGTT
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 1 1 2222 1111 111111111 33333333333 2222222222222222 444444444444444444444444444444444444444444444
lowQualScore : 1 6 5 7 0 6 1 1 3333 1111 5 3 777777777 5 0 22222222222 1 3 6 77 8888888888888888 2 1 777777777777777777777777777777777777777777777 0 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 33 1 1
lowQualScore : . . . . . . . . .... .... . . ......... . . ........... . . . .. ................ . . ............................................. . .... . . .. . ... . . . .. . ........ . .. . .
lowQualScore : 0 0 0 0 7 7 0 2 8888 9999 0 2 999999999 0 1 99999999999 0 7 7 77 4444444444444444 5 0 222222222222222222222222222222222222222222222 2 2222 1 8 00 0 444 5 1 6 44 7 77777777 3 00 0 0
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTC--T------A-GCCAATAAG-AAGT-TTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCGA---------NGNACGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAG-TTCATTTGTTGT
Reference ( family-2510 ) : ATNAACTCTTTCGTGCTCACTTACTTATTTCAATATCGCCAGANCAATTTCCTAATCCGTAACT--TGTTTGCTGAACGATGT-CCGCCATTTTC--T------A-GCCAATAAG-AGAT-TTG-ATGTATNAAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCGA---------NGNACNCCCAATCAGCGCGCTTCNTACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTNCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGNTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAG-TTNATTTGNTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTA--C------A-GCCAATAAA-AAAT-TTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACAC-CC-CCCAA---------AATACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAA-TCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAA-TTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA--TTCATTTGAt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAA-TTGATTTGTTGT
gi|13 : ctTGT-CCATCATTTTC--T------A-GCCAATAAG-TAGT-T---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGAC-TTCATTTGTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAG-TTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTC--C------A-GCCAATAA--AAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGG-TTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTC--C------A-GCCAATAAA-AAGA-TTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATA----CC-CCCGC---------CCCACCTCCAA
gi|2 : A---------AATATCCCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAA-TTAATTTGATGTaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTC--T------A----------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACAC-CC----GA---------GGAAGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAA-AATTGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAG-TTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCAT------A-GTCAATAAGTAGAT-T---ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCGA---------TGAAGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-ATATGCAG------TGT------------ATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAG-TTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCC--T------G-GCCAATAAA-TGGC-TT--ATGTATTGAGTGCGCAGATTGGTCC-----TGCGT-CG-TGGGAGTGTTTTTTAGGAC---CAATCAGCGCG-TCCATACATAAGACA--------------------GA-AT-TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAG-TTCATTTG
gi|6 : tGT-CTGCCATTTTC--TTTTTGAATGCTG-TACG----T-TTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACAC-CCACCCGA---------GGACGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAG-Tcaag
gi|7 : gtaatgcaaacataacaaacataCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAA-TTAATTTGA
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCT--A-ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAG-TTTATTT
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTA-TTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 111111111111 11 22222222222 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 66 5 555555555555 22 3 6 11 99999999999 0 2 0 666666666666666666666666666666666666666666666 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . ............ .. . . .. ........... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 0 0 99 0 444444444444 22 7 7 88 00000000000 7 5 8 999999999999999999999999999999999999999999999 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTC--TAGCC-AATA--AANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCGA-NG-----AAGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTC--TAGCC-AATA--AGAAGTTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCGA-NG-----NACGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTA--CAGCC-AATA--AAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACAC-CC-CCCAA-AA-----TACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTC--TAGCC-AATA--AGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTC--CAGCC-AATA--AAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTC--CAGCC-AATA--AAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCC-CC-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTC--TA----------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACAC-CC----GA-GG-----AAGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAAAAT-TGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTC-AATA--AGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCGA-TG-----AAGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCC--TGGCC-AATA--AATGGCTT--ATGTATTGAGTGCGCAGATTGGTCC-----TGCGT-CG-TGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA----------GAA-T-----------TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGT-CTGCCATTTTC--TTTTTGAATGCTGTACGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACAC-CCACCCGA-GG-----ACGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacataCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCTA---ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 1 222222222 0 2 0 777777777777777777777777777777777777777777777 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 0 000000000 7 5 8 888888888888888888888888888888888888888888888 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTC--CAGCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTC--TAGCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-ANGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTA--CAGCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACACC-C-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTC--TAGCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTC--CAGCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTC--CAGCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCCC-C-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTC--TA-------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACACC-C----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAA-AATTGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCC--TGGCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA--------------------GA-AT-TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACACC-CACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCT--A-ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 666666666666666666666666666666666666666666666 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 999999999999999999999999999999999999999999999 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACAC-CC-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCC-CC-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACAC-CC----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAAAAT-TGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA----------GAA-T-----------TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACAC-CCACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCTA---ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 777777777777777777777777777777777777777777777 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 888888888888888888888888888888888888888888888 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACACC-C-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCCC-C-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACACC-C----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAA-AATTGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA--------------------GA-AT-TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACACC-CACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCT--A-ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 666666666666666666666666666666666666666666666 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 999999999999999999999999999999999999999999999 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACAC-CC-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCC-CC-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACAC-CC----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAAAAT-TGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA----------GAA-T-----------TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACAC-CCACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCTA---ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 777777777777777777777777777777777777777777777 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 888888888888888888888888888888888888888888888 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACACC-C-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCCC-C-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACACC-C----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAA-AATTGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA--------------------GA-AT-TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACACC-CACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCT--A-ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 666666666666666666666666666666666666666666666 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 999999999999999999999999999999999999999999999 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACAC-CC-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCC-CC-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACAC-CC----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAAAAT-TGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA----------GAA-T-----------TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACAC-CCACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCTA---ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 777777777777777777777777777777777777777777777 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 888888888888888888888888888888888888888888888 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACACC-C-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCCC-C-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACACC-C----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAA-AATTGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA--------------------GA-AT-TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACACC-CACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCT--A-ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
blockSeqs : C T CAAA ACTG A T TA T T GT TG A T AC T GTGTTTTTT A AAGACAATGTTTTCTTGATATTTGGATATCTTCGGTCAAAT T CATA G TT C TTG C C GT A TTTTAATT T
blockSeqs : C C TG ATT . G . A A G CA A . G . . C AAGACAATGTTTTCTGGATATTTGGATATCTTCAGTCAAAT T CG G . G . G C . . . T
blockSeqs : A A T TT . G . A A G CA A . C . . C TAATCTACTTATTGGCTAAAAAATTGCAGT C TG A . C . T G . . . T
blockSeqs : . T . T A T GA T . G . . C ATAATCTACTTATTGACTATGGAATAT A CA A . G . C C . . . T
blockSeqs : . A . T C . CA . . . A TAATACAGAAATCTAACCCCCCAAA T CA A . G . G C . . . T
blockSeqs : . T . . T . TG C TAAGACAGAATTCAAGTACAAA . TG A . T . G C . . . C
blockSeqs : . . GA . TAATCTACTATTGGCCAG . CA G . C . G G . . . T
blockSeqs : . G . G . T G . . . T
blockSeqs : . A . G . T G . . . T
blockSeqs : . . G . C C . . . C
blockSeqs : G . T C . . . C
blockSeqs : G . G A . . . T
blockSeqs : C . G T . . . T
blockSeqs : A . G . . . . .
blockSeqs : C . . .
blockSeqCons :
originalCons : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
finalCons : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACACC-C-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA
Alignments
lowQualScore : 2222 11 11 333333333 555555555555555555555555555555555555555555555
lowQualScore : 0 1 1 1111 8888 5 1 77 3 2 33 22 3 6 33 8 222222222 0 2 0 666666666666666666666666666666666666666666666 2 9999 0 1 55 1 444 2 1 0 33 2 99999999 2 0
lowQualScore : . . . .... .... . . .. . . .. .. . . .. . ......... . . . ............................................. . .... . . .. . ... . . . .. . ........ . .
lowQualScore : 7 0 2 2222 4444 7 0 99 0 8 88 22 7 7 33 0 000000000 7 5 8 999999999999999999999999999999999999999999999 1 2222 1 8 00 9 444 5 1 6 44 7 77777777 3 3
consensus : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGA-ATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
Reference ( family-2510 ) : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCAAGANCAATTTCCTAATCCGTAACN--TGTTTACTGAACGATGT-CCGCCATNTTCCA--GCCAATAAANAGNTTG-ATGTATCGAGCGCGCTGATTGGTCCTAAAATACAC-CC-CCCG-AGGA---------AGGCCCAATCAGCGCGCTTCATACA-AAGACAATGT-TTTNTGGA-TATTTGGATATCTCCAGT-CAAATGTAATGGCG--GACATCGTTCAGCAAACAA--GTTGCGGAGTAGGAAATTGGTC---TGATCAGCTGTTCTAGATGATA--TTG-A--------AATAAGTAAGTGAGCACGAAAGAGTTCATTTGTTGT
gi|1 : ATTAATTATTTCGTGCTCACTTACTTATTTCATTATCGCCAGAGCAATTTTTTACTTCGCAACT--TATTTGCAGAACGATGT-CAGCCATGTTACA--GCCAATAAAAAATTTG-ATGTATCAAGCGTGCTGATTGGTTCTAAATAACAC-CC-CCCA-AAAT---------ACCCCCAATCAGCGCCCTTCTTACA-AAGACAATGT-TTTGTGGA-TATTTGGATATCTTCAGT-CACATGTAATGGTG--GACGTCGTTCAGTTAACAA--GTTGCGGAGTAGAAAATTGCTC---TGATCAGCTATTCTAGGCGATA--ATG-A--------AATAAGAAAGAGTGCACGAAATAATCAATTTGATGT
gi|10 : TAGAAATTTGCTC---TCAGCAACTGTTCTTGATGATA--TCG-A--------AATACATAGGTGATAATGAACGAATTCATTTGTTGT
gi|11 : tTATGAAATTGGTC----------CCGTTTTAGATGACA--TTG-A--------AATAAGTAAGTAAGCATGAACTA-TTCATTTGt
gi|12 : acaaaatatatGGAAATTGCTC---TGATCAGCTGAGCTAGATGATA--TTG-A--------TATAAGTAAGTGAGCATGAAATAATTGATTTGTTGTat
gi|13 : ctTGT-CCATCATTTTCTA--GCCAATAAGTAGTT---ATGTACTGAGTGCACTGACTAG
gi|14 : TTGGTC---TTTTGAGCTGTTTTAGATGATT--CTG-A--------AATAAGTAAGTGAGCATAAAAGACTTCATTTGTTaaaactgttcaaatggatta
gi|15 : CTGTTCTAGGCGAAA--TTG-ATTTTAATTAACAAGCTAGTGAGCATGAACTAGTTCATTTGTTGT
gi|16 : TGAACGATGT-CCACCATGTTCCA--GCCAATAAAAATATTG-ATGTATCAAGCGTGCAGATTGGTCCt
gi|17 : TGGTC---TCATCAGCCGTTCTGGATGATA--TTG-A--------AATAAGTATGTG--------AGGGTTTATTTGTTGT
gi|18 : ATGGCG--GACATCGTTCAGCAAACAA--GTTTCGGAGTAGAAAATTGTTC---TGATt
gi|2 : cAACGATGT-CCGCCATGTTCCA--GCCAATAAAAAGATTG-ATGTATCAAGTGTGCTGATTGGTCCTTAAATACCC-CC-GCC
gi|2 : CCCAATCAGCGCCATCCTTACA-AAGACAATGT-TTTCTTGA-TATTTGGATATCTTCGGT-CAAATGTAATGGTG--GACATCGTTCAGCAAACAA--GTTGAAGAGTAGAAAATTGCTC---TGATCAGCTGTTCTCGGCGATA--AT--A--------AATAAGTAAGTGAGCACGAAAGAATTAATTTGATGTccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatccccaatcagcgccatccttacaaagacaatgttttcttgatatttggatatcttcggtcaaatgtaatggtggacatcgttcagcaaacaagttgaagagtagaaaattgctctgatcagctgttctcggcgataataaataagtaagtgagcacgaaagaattaatttgatgttg
gi|3 : aacgatgtccgccatgttccagccaataaaaagattgatgtatcaagtgtgctgattggtccttaaatacccccgccccacctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatcAATGGCA--AACTTTGTTAA--AAATATTTGTTACAGATTAGGAAATTGGTCTTGTGAACAGCTGTTTTAGATAATA--Ttg
gi|3 : TCACAAGACCAATTTCCTAATCTGTAACAAATATTT--TTAACAAAGT-TTGCCATTTTCTA---------------TTGTATGCATGAAGCGCGTTGATTGGTCCTAAAATACAC-CC----G-AGGA---------AGGACCAATCAGCGCGCTTTATACA-TAATC--TAC-TTATTGGC-TA---AAAAAT-TGCAGT------GTA-TGG------------TCAATAAACAA--ATCATGGATTAGGAAATTGGTC---TTATGAGCTGTTTTAGATTATA--TTG-A--------AATAAGTTAGTGAGCATGAAAGAGTTCATTTGTTGttctattgtatgcatgaagcgcgttgattggtcctaaaatacacccgaggaaggaccaatcagcgcgctttatacataatctacttattggctaaaaaattgcagtgtatggtcaataaacaaatcatggattaggaaattggtcttatgagctgttttagattatattgaaataagttagtgagcatgaaagagttcatttgttg
gi|4 : atattatctaaaacagctgtATCATAAGACCAATGTTCTAACCCATAATG--GGTTTATT-AACGATAC-ACTGCATATTCCATAGTCAATAAGTAGATT--ATGTATCAAGCGCGCTGATTGGTCCTAAAATACACTTC-CCCG-ATGA---------AGGCCCAATCAGCGCGCTTGATAC-----ATAATCTACTTATTGACTA--TGGA-AT-----------ATGCAGTG-------TATCGTT-AATAAACCC--ATTATGGGTTAGAACATTGGTC---TTATGATCTGTT-TAGATGATT--TTG-A--------AATAAATAAGTGAGCATGAAAGAGTTCATTTGCTGT
gi|5 : agAGAACAAGTTCCTAAACCATAA-T--TGTTTACTGAA-GATTCACTGGCATTTCCTG--GCCAATAAATGGCTT--ATGTATTGAGTGCGCAGATTGGTCCTG----------C-GTCGTGGGAGTGTTTTTTAGGACCAATCAGCGCG-TCCATACATAAGACA----------GAA-T-----------TCAAGTACAAA---AATGGCA--GACTTTGTTCAACATATTT--GTTACGGATTAGGTAATTGGTC---TCTTGAACTGTTTT---TTATA--T---A--------AATAAATA----AGCATGAAAGAGTTCATTTG
gi|6 : tGTTTT-ATGCATGAAGAGCGCTGATTGGTCCTAAATTACAC-CCACCCG-AGGA---------CGGACCAATCAGTGCGCTTGATTCA-----TAATCT-ACTAT--------TGG------CCAG-------GAAATGGCATAGA-ATC-TTCAATACACAA--ATTATGGAGTAGGTATTTGGTC---TTATCAGCTGTTCTGGATGATA--TTG-A--------AATAAGTAAGTCAGCACGAAAAAGTcaag
gi|7 : gtaatgcaaacataacaaacatagtctgccattttctttttgaatgctgtacCCCAATCAGCGCCATTCTTACA-AAGACAATGT-TTTCTGGA-TATTTGGATATCTTCAGT-CAAATGTTATGGTG--GACATCGTTCAGCAAACAA--GTTGCAGAGAAGAAAATTGCTC---TGATCAGCTGTTCTAGGCGATA--ATGAA--------AATAAGTAAGTGAGTACAAAAGAATTAATTTG
gi|8 : CCAATCAGCGCGCTTCATACATAATACA-----------GA-AATCTA---ACCCCC----CAAA---AA-GGCA--AACAACGTTCAGCAAACAA--GTTGTGGAGAAAGAAATTGATC---TGATAAGCTGTTCAAGATGAAA--CTG-A--------TATAGGTAAGTGAGCATGAAAGAGTTTATTTat
gi|9 : TTGAACAAAAAA--GTTGTTGGGTAAGAAATTGCTC---TGATTAGCTGTTC--GATATTAGTTTT-A--------TACAAGGAAGTGAGCTTGAAGGAGATCTATTGTTGTttcta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCGCCAGTTTCTATCTTGTATGCATGAAGCTCGTCCAGAATGGCTCTAAA