lowQualScore : 22222222222222222
lowQualScore : 4 1 00000000000000000 11 222 1 222 33333333 66666666666666666666 3333333 1 777 222222 2222 1 777 1 1 1 1
lowQualScore : 0 6 5 6 77777777777777777 88 000 6 5 6 888 6 55555555 44444444444444444444 6 1111111 5 000 0 999999 6 5 7777 666 5 555 000 3 7 0 6 55 3 9 66 4 5
lowQualScore : . . . . ................. .. ... . . . ... . ........ .................... . ....... . ... . ...... . . .... ... . ... ... . . . . .. . . .. . .
lowQualScore : 0 0 0 0 00000000000000000 00 000 0 0 0 777 7 77777777 33333333333333333333 0 0000000 0 000 8 222222 0 3 0000 444 3 444 000 3 3 9 0 00 6 7 11 1 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AAATCATTTACAAATATTGCG-AAAAGA-AG-CAAANA--AAA-----TTTAGTTGAGTTTT--A-GAGAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAG-ATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTA---TATACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAC-TAACAGCCNGCGGCTCGTGATAA--GTAATTTCAAC-AGAAGCAGCAGTCAACCGGCATTGACAGGTTCTAC--TATTTTGCAA
Reference ( gi|1 ) : TAGTTTAAACATATTTTATTTAAAAAAATTATATGAAATGGGATTGGTTCAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATCAAAATCATTGACAAATATCATGGAAAAGAGAGGCAAAAA--AAA-----TTTAGTCGAGTTTTATAAGAAAGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAAT-ATAGAGCAAATGAAGTGCTGCATAACAAAGTTTA---TATAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCCAC-TAACACCCGGTGGCTCGTGATAA--GTAATTTCAAC-AGAAGCAGCAGTCAACCTGCATTGACAGGTTCTAT--TTTTTGGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAAATCATTGACAAA--------AAAAAA----C-AACA--ATA-----TTTAGGTGAGTTTTTTATGAGAAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAG-ATAGAGCGA
gi|2 : GTTTAA--AT---ATAAAATATATTACAAAA----AGTCATTTATAAATATTGTGGAAAAGAGAA--AAAAATCAAG-----TTTAGTTGAGTTTTAGAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAG-ATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAA--TATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCCAC-TAATAGGCAGCGGCATTTGATAA--GT-ATTTCGAC-AGAAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTT
gi|3 : TACAAACCCTATATCATTTACAACTATTACG--AAAGACAGATAAAGA--AAACAATATCTATTTGAGTTTT--------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAG-ACAGAGCGATTTAGTTGCAGCATAACA--GTTTA---TATATAGTTATTTTGATAGCTCACTTC--ATCCCATGTT---TGCCATCTCGTAA-TAACGGCCAGCGGCTCGTGATAACGGTA-TTTCAACCAGAAGCAGCAGTCAA-CGGCATTTGCAAGTTCTAT--AACTTTGCAAaca
gi|17 : AAGAAGAAGAGA-----TACAGCGAATTAATTACAGCATAACTTAGTTTA---TATA
gi|5 : GAAGAAAGA--A-AGAGCGAGTTAGTTGCTGCATAACAAAGTTTA---TATACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAAC-AGGAGCAGCAGTCAACTGGCATTGACAGGTTCTAC--TATTTTGCAAt
gi|12 : GAAGAACGAGAGAGTGAGTTAGTTGCTGCATAACAAAGTTTA---TTTA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCCAC-TAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTA---TATACAGTTATTTTGATTGTTCACA-CTCATC---TGTT---TGGCACCTCCCTC-TAACAGCCAACGGCTCGTGATAA--GTA-TTTCATC-TGAAGCAGATGTCAACCTGCATTGACAGGTTCTAT--TATTTTGCAA
gi|8 : TGCTGCATAACAAAGTTTA---TATACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCACAC-TAACAGCCTGCGGCTCGTGATAA--GTAATTTCAAC-AGAAGCAGCAGTCAACTGACATTGACAGGTTCTAC--TATTTTGCAAac
gi|6 : TGCTGCATACCAAAGTTTA---TATACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCCAA-TAACAGCCTGCGGCTCGTTATAA--GTAATTTCAAC-AGAAGCAGCAATCAACTGGCATTGACAGATTCTAC--TATTTTGCAAactt
gi|18 : gcgagttagtAAGTTTA---TATACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACacta
gi|9 : gAGTTTA---TATACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAC-TAACAGCCTGCGGCTCGTGATAA--GTAATTTCAAC-AGAAACAGCAGTCAACTGGCATTGACAGGTTCTAC--TATTTTGCAA
gi|10 : TTCA---TATACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAC-TAACAGCCAGCGGCTCGTGATAA--GTAATTTGAAC-AGAAGCAGCAGTCAACCGGCATTGACAAGTTCTAT--TATTTTACAAac
gi|13 : tGTTCACTTGTCATC---TGTT---TGGCACCTCACAC-TCACAGCCCGCGGATTGTGATAA--GTAATTTCAAC-AGAAGCAACAGTCAac
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTCAT-AAACAGCCAACGGCTTGTGATAA--GT-ATTTCAAG-AGAAG
gi|11 : TTCTCATC---TGTT---TGGCACCTCCCAC-TAACA----GCGGCTCGTGATAA--GTAATTTCAAC-AGAAGCGGCAGTCAACCTGCATTGACAGGTTCTAT--TATTTTGCAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACTGGCATCATATTTTGCAAA
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG
Alignments
lowQualScore : 1 444444444444 1 22222222 22222 222222222222 2222 11 4444444444 111
lowQualScore : 5 2 555555555555 5 6 6 66666666 3 66 33333 777777777777 55 1 1111 33 5555555555 777 1 7 3 555 555 2 2 44 7 3 3 1
lowQualScore : . . ............ . . . ........ . .. ..... ............ .. . .... .. .......... ... . . . ... ... . . .. . . . .
lowQualScore : 0 5 000000000000 0 7 7 00000000 0 22 88888 222222222222 88 0 5555 88 8888888888 555 4 1 3 000 000 9 1 22 2 1 1 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATAT--TGCGAAA---AGA---A--GNAAANAA---NATTTAGTTGAG--TTTTAT--GAA---AGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
Reference ( family-2507 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTTACAAATAT--TGCGAAA---AGA---A--GCAAANAA---AATTTAGTTGAG--TTTTA---GAG---AGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTACTATTTTGCAA
gi|1 : CAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATC-AA-AATCATTGACAAATATCATG-GAAA---AGA---GAGGCAAAAAA---AATTTAGTCGAG--TTTTATAAGAA---AGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAATATAGAGCAAATGAAGTGCTGCATAACAAAGTTTATA-TAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCC-ACTAACACCCGGTGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCTGCATTGACAGGTTCTATTTTTTGGCAA
gi|10 : tagtttaaacatattttatttaaaaaaattatatgaaatgggattggttTTCATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCAGCGGCTCGTGATAA--GTAATTTGAA-CAG-AAGCAGCAGTCAACCGGCATTGACAAGTTCTATTATTTTACAA
gi|11 : tTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGC----GGCTCGTGATAA--GTAATTTCAA-CAG-AAGCGGCAGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAac
gi|12 : GAAGAACGAGA--GAGTGAGTTAGTTGCTGCATAACAAAGTTTATT-TA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCC-ACTAAactt
gi|13 : GTTCACTTGTCATC---TGTT---TGGCACCTCAC-ACTCACAGCCCGCGGATTGTGATAA--GTAATTTCAA-CAG-AAGCAACAGTCA
gi|14 : CT-ACTGACAGCCAGCGACTGGTGATAG--ATGATTT-AA-CAACAAGCAATAGTTAACTGGCAT---CA--------TATTTTGCAA
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTC-ATAAACAGCCAACGGCTTGTGATAA--GT-ATTTCAA-GAG-AAGa
gi|17 : AAGAAGAA-GAGATACAGCGAATTAATTACAGCATAACTTAGTTTATA-TA
gi|18 : AAGTTTATA-TACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACt
gi|2 : gGTTTAA--AT---ATAAAATATATTACAAAA----A-G-TCATTTATAAATAT--TGTGGAA---AAG---A--GAAAAAAATCAAGTTTAGTTGAG--TTTTA---GAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAGATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAATATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCC-ACTAATAGGCAGCGGCATTTGATAA--GT-ATTTCGA-CAG-AAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTTACA
gi|3 : TACAAACCC-TATA-TCATTTACAACTAT--TACGAAAGACAGATAAA--GAAAACAA---TATCTATTTGAG--TTTT-----------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAGACAGAGCGATTTAGTTGCAGCATAAC--AGTTTATA-TATAGTTATTTTGATAGCTCACT--TCATCCCATGTT---TGCCATCTCGT-AATAACGGCCAGCGGCTCGTGATAACGGT-ATTTCAACCAG-AAGCAGCAGTCAA-CGGCATTTGCAAGTTCTATAACTTTGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAA-A-TCATTGACA-----------AAA---AAA---A--AC-AACAA---TATTTAGGTGAGTTTTTTAT--GAG---AAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAGATAGAGCGA
gi|5 : GAAGAAAGAAA--GAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAA-CAG-GAGCAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAA
gi|6 : GCGAGTTAGTTGCTGCATACCAAAGTTTATA-TACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCC-AATAACAGCCTGCGGCTCGTTATAA--GTAATTTCAA-CAG-AAGCAGCAATCAACTGGCATTGACAGATTCTACTATTTTGCAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTATA-TACAGTTATTTTGATTGTTCAC-ACTCATC---TGTT---TGGCACCTCCC-TCTAACAGCCAACGGCTCGTGATAA--GT-ATTTCAT-CTG-AAGCAGATGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAacta
gi|8 : TGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCAC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACTGACATTGACAGGTTCTACTATTTTGCAAac
gi|9 : AGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAACAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAAactt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG
Alignments
lowQualScore : 1 444444444444 1 22222222 22222 44444444444444 1111 11 3333 111
lowQualScore : 5 1 555555555555 5 6 6 66666666 1 3 33333 00000000000000 1 8888 33 3333 0 777 1 7 3 555 555 2 2 44 7 3 3
lowQualScore : . . ............ . . . ........ . . ..... .............. . .... .. .... . ... . . . ... ... . . .. . . .
lowQualScore : 0 0 000000000000 0 7 7 00000000 0 2 88888 22222222222222 0 5555 88 8888 8 555 4 1 3 000 000 9 1 22 2 1 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATAT--TGCGAAA---AGA---A--GAAAANAAT---ATTTAGTTGAG--TTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
Reference ( family-2507 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATAT--TGCGAAA---AGA---A--GNAAANAAN---ATTTAGTTGAG--TTTTAT--GAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
gi|1 : CAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATC-AA-AATCATTGACAAATATCATG-GAAA---AGA---GAGGCAAAAAAA---ATTTAGTCGAG--TTTTATAAGAAAGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAATATAGAGCAAATGAAGTGCTGCATAACAAAGTTTATA-TAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCC-ACTAACACCCGGTGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCTGCATTGACAGGTTCTATTTTTTGGCAA
gi|10 : tagtttaaacatattttatttaaaaaaattatatgaaatgggattggttTTCATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCAGCGGCTCGTGATAA--GTAATTTGAA-CAG-AAGCAGCAGTCAACCGGCATTGACAAGTTCTATTATTTTACAA
gi|11 : tTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGC----GGCTCGTGATAA--GTAATTTCAA-CAG-AAGCGGCAGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAac
gi|12 : GAAGAACGAGA--GAGTGAGTTAGTTGCTGCATAACAAAGTTTATT-TA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCC-ACTAAactt
gi|13 : GTTCACTTGTCATC---TGTT---TGGCACCTCAC-ACTCACAGCCCGCGGATTGTGATAA--GTAATTTCAA-CAG-AAGCAACAGTCA
gi|14 : CT-ACTGACAGCCAGCGACTGGTGATAG--ATGATTT-AA-CAACAAGCAATAGTTAACTGGCAT---CA--------TATTTTGCAA
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTC-ATAAACAGCCAACGGCTTGTGATAA--GT-ATTTCAA-GAG-AAGa
gi|17 : AAGAAGAA-GAGATACAGCGAATTAATTACAGCATAACTTAGTTTATA-TA
gi|18 : AAGTTTATA-TACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACt
gi|2 : gGTTTAA--AT---ATAAAATATATTACAAAA----A-G-TCATTTATAAATAT--TGTGGAA---AAG---A--GAAAAAAATCAAGTTTAGTTGAG--TTTTAGAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAGATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAATATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCC-ACTAATAGGCAGCGGCATTTGATAA--GT-ATTTCGA-CAG-AAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTTACA
gi|3 : TACAAACCC-TATA-TCATTTACAACTAT--TACGAAAGACAGATAAA--GAAAACAAT---ATCTATTTGAG--TTTT--------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAGACAGAGCGATTTAGTTGCAGCATAAC--AGTTTATA-TATAGTTATTTTGATAGCTCACT--TCATCCCATGTT---TGCCATCTCGT-AATAACGGCCAGCGGCTCGTGATAACGGT-ATTTCAACCAG-AAGCAGCAGTCAA-CGGCATTTGCAAGTTCTATAACTTTGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAA-A-TCATTGACAAA---------AAA---AAA--------CAACAAT---ATTTAGGTGAGTTTTTTAT--GAGAAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAGATAGAGCGA
gi|5 : GAAGAAAGAAA--GAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAA-CAG-GAGCAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAA
gi|6 : GCGAGTTAGTTGCTGCATACCAAAGTTTATA-TACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCC-AATAACAGCCTGCGGCTCGTTATAA--GTAATTTCAA-CAG-AAGCAGCAATCAACTGGCATTGACAGATTCTACTATTTTGCAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTATA-TACAGTTATTTTGATTGTTCAC-ACTCATC---TGTT---TGGCACCTCCC-TCTAACAGCCAACGGCTCGTGATAA--GT-ATTTCAT-CTG-AAGCAGATGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAacta
gi|8 : TGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCAC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACTGACATTGACAGGTTCTACTATTTTGCAAac
gi|9 : AGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAACAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAAactt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG
Alignments
lowQualScore : 1 444444444444 1 22222222 222222222 111 111 1111 111
lowQualScore : 5 1 555555555555 5 6 6 66666666 1 3 3 999 666666666 777 1 777 3333 0 777 1 7 3 555 555 2 2 44 7 3 3
lowQualScore : . . ............ . . . ........ . . . ... ......... ... . ... .... . ... . . . ... ... . . .. . . .
lowQualScore : 0 0 000000000000 0 7 7 00000000 0 2 0 222 555555555 555 0 555 2222 8 555 4 1 3 000 000 9 1 22 2 1 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAA---AAG---AGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
Reference ( family-2507 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTGCGAAA---AGA---AGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
gi|1 : CAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATC-AA-AATCATTGACAAATATCATGGAA---AAG---AGAGGCAAAAAAA---ATTTAGTCGAGTTTTATAAGAAAGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAATATAGAGCAAATGAAGTGCTGCATAACAAAGTTTATA-TAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCC-ACTAACACCCGGTGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCTGCATTGACAGGTTCTATTTTTTGGCAA
gi|10 : tagtttaaacatattttatttaaaaaaattatatgaaatgggattggttTTCATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCAGCGGCTCGTGATAA--GTAATTTGAA-CAG-AAGCAGCAGTCAACCGGCATTGACAAGTTCTATTATTTTACAA
gi|11 : tTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGC----GGCTCGTGATAA--GTAATTTCAA-CAG-AAGCGGCAGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAac
gi|12 : GAAGAACGAGA--GAGTGAGTTAGTTGCTGCATAACAAAGTTTATT-TA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCC-ACTAAactt
gi|13 : GTTCACTTGTCATC---TGTT---TGGCACCTCAC-ACTCACAGCCCGCGGATTGTGATAA--GTAATTTCAA-CAG-AAGCAACAGTCA
gi|14 : CT-ACTGACAGCCAGCGACTGGTGATAG--ATGATTT-AA-CAACAAGCAATAGTTAACTGGCAT---CA--------TATTTTGCAA
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTC-ATAAACAGCCAACGGCTTGTGATAA--GT-ATTTCAA-GAG-AAGa
gi|17 : AAGAAGAA-GAGATACAGCGAATTAATTACAGCATAACTTAGTTTATA-TA
gi|18 : AAGTTTATA-TACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACt
gi|2 : gGTTTAA--AT---ATAAAATATATTACAAAA----A-G-TCATTTATAAATATTGTGGAA---AAG---AGA---AAAAAATCAAGTTTAGTTGAGTTTTAGAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAGATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAATATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCC-ACTAATAGGCAGCGGCATTTGATAA--GT-ATTTCGA-CAG-AAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTTACA
gi|3 : TACAAACCC-TATA-TCATTTACAACTATTACGAAAGACAGATAAAGA---AAACAAT---ATCTATTTGAGTTTT--------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAGACAGAGCGATTTAGTTGCAGCATAAC--AGTTTATA-TATAGTTATTTTGATAGCTCACT--TCATCCCATGTT---TGCCATCTCGT-AATAACGGCCAGCGGCTCGTGATAACGGT-ATTTCAACCAG-AAGCAGCAGTCAA-CGGCATTTGCAAGTTCTATAACTTTGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAA-A-TCATTGAC----------AAA---AAA---AAA---CAACAAT---ATTTAGGTGAGTTTTTTATGAGAAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAGATAGAGCGA
gi|5 : GAAGAAAGAAA--GAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAA-CAG-GAGCAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAA
gi|6 : GCGAGTTAGTTGCTGCATACCAAAGTTTATA-TACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCC-AATAACAGCCTGCGGCTCGTTATAA--GTAATTTCAA-CAG-AAGCAGCAATCAACTGGCATTGACAGATTCTACTATTTTGCAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTATA-TACAGTTATTTTGATTGTTCAC-ACTCATC---TGTT---TGGCACCTCCC-TCTAACAGCCAACGGCTCGTGATAA--GT-ATTTCAT-CTG-AAGCAGATGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAacta
gi|8 : TGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCAC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACTGACATTGACAGGTTCTACTATTTTGCAAac
gi|9 : AGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAACAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAAactt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG
Alignments
lowQualScore : 1 444444444444 1 22222222 222222 111 111 1111 111
lowQualScore : 5 1 555555555555 5 6 6 66666666 1 66 555 0 888888 777 1 777 3333 0 777 1 7 3 555 555 2 2 44 7 3 3
lowQualScore : . . ............ . . . ........ . .. ... . ...... ... . ... .... . ... . . . ... ... . . .. . . .
lowQualScore : 0 0 000000000000 0 7 7 00000000 0 22 888 2 888888 555 0 555 2222 8 555 4 1 3 000 000 9 1 22 2 1 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
Reference ( family-2507 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
gi|1 : CAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATC-AA-AATCATTGACAAATATCATGGAAAA------GAGAGGCAAAAAAA---ATTTAGTCGAGTTTTATAAGAAAGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAATATAGAGCAAATGAAGTGCTGCATAACAAAGTTTATA-TAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCC-ACTAACACCCGGTGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCTGCATTGACAGGTTCTATTTTTTGGCAA
gi|10 : tagtttaaacatattttatttaaaaaaattatatgaaatgggattggttTTCATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCAGCGGCTCGTGATAA--GTAATTTGAA-CAG-AAGCAGCAGTCAACCGGCATTGACAAGTTCTATTATTTTACAA
gi|11 : tTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGC----GGCTCGTGATAA--GTAATTTCAA-CAG-AAGCGGCAGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAac
gi|12 : GAAGAACGAGA--GAGTGAGTTAGTTGCTGCATAACAAAGTTTATT-TA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCC-ACTAAactt
gi|13 : GTTCACTTGTCATC---TGTT---TGGCACCTCAC-ACTCACAGCCCGCGGATTGTGATAA--GTAATTTCAA-CAG-AAGCAACAGTCA
gi|14 : CT-ACTGACAGCCAGCGACTGGTGATAG--ATGATTT-AA-CAACAAGCAATAGTTAACTGGCAT---CA--------TATTTTGCAA
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTC-ATAAACAGCCAACGGCTTGTGATAA--GT-ATTTCAA-GAG-AAGa
gi|17 : AAGAAGAA-GAGATACAGCGAATTAATTACAGCATAACTTAGTTTATA-TA
gi|18 : AAGTTTATA-TACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACt
gi|2 : gGTTTAA--AT---ATAAAATATATTACAAAA----A-G-TCATTTATAAATATTGTGGAAAA------GAGA---AAAAAATCAAGTTTAGTTGAGTTTTAGAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAGATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAATATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCC-ACTAATAGGCAGCGGCATTTGATAA--GT-ATTTCGA-CAG-AAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTTACA
gi|3 : TACAAACCC-TATA-TCATTTACAACTATTACGAAAGACAGATAAAGA---AAACAAT---ATCTATTTGAGTTTT--------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAGACAGAGCGATTTAGTTGCAGCATAAC--AGTTTATA-TATAGTTATTTTGATAGCTCACT--TCATCCCATGTT---TGCCATCTCGT-AATAACGGCCAGCGGCTCGTGATAACGGT-ATTTCAACCAG-AAGCAGCAGTCAA-CGGCATTTGCAAGTTCTATAACTTTGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAA-A-TCATTGACA----------AAAA------AAAA---CAACAAT---ATTTAGGTGAGTTTTTTATGAGAAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAGATAGAGCGA
gi|5 : GAAGAAAGAAA--GAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAA-CAG-GAGCAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAA
gi|6 : GCGAGTTAGTTGCTGCATACCAAAGTTTATA-TACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCC-AATAACAGCCTGCGGCTCGTTATAA--GTAATTTCAA-CAG-AAGCAGCAATCAACTGGCATTGACAGATTCTACTATTTTGCAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTATA-TACAGTTATTTTGATTGTTCAC-ACTCATC---TGTT---TGGCACCTCCC-TCTAACAGCCAACGGCTCGTGATAA--GT-ATTTCAT-CTG-AAGCAGATGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAacta
gi|8 : TGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCAC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACTGACATTGACAGGTTCTACTATTTTGCAAac
gi|9 : AGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAACAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAAactt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG
Alignments
lowQualScore : 1 444444444444 1 22222222 222222 111 111 1111 111
lowQualScore : 5 1 555555555555 5 6 6 66666666 1 66 555 0 888888 777 1 777 3333 0 777 1 7 3 555 555 2 2 44 7 3 3
lowQualScore : . . ............ . . . ........ . .. ... . ...... ... . ... .... . ... . . . ... ... . . .. . . .
lowQualScore : 0 0 000000000000 0 7 7 00000000 0 22 888 2 888888 555 0 555 2222 8 555 4 1 3 000 000 9 1 22 2 1 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
Reference ( family-2507 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
gi|1 : CAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATC-AA-AATCATTGACAAATATCATGGAAAA------GAGAGGCAAAAAAA---ATTTAGTCGAGTTTTATAAGAAAGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAATATAGAGCAAATGAAGTGCTGCATAACAAAGTTTATA-TAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCC-ACTAACACCCGGTGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCTGCATTGACAGGTTCTATTTTTTGGCAA
gi|10 : tagtttaaacatattttatttaaaaaaattatatgaaatgggattggttTTCATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCAGCGGCTCGTGATAA--GTAATTTGAA-CAG-AAGCAGCAGTCAACCGGCATTGACAAGTTCTATTATTTTACAA
gi|11 : tTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGC----GGCTCGTGATAA--GTAATTTCAA-CAG-AAGCGGCAGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAac
gi|12 : GAAGAACGAGA--GAGTGAGTTAGTTGCTGCATAACAAAGTTTATT-TA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCC-ACTAAactt
gi|13 : GTTCACTTGTCATC---TGTT---TGGCACCTCAC-ACTCACAGCCCGCGGATTGTGATAA--GTAATTTCAA-CAG-AAGCAACAGTCA
gi|14 : CT-ACTGACAGCCAGCGACTGGTGATAG--ATGATTT-AA-CAACAAGCAATAGTTAACTGGCAT---CA--------TATTTTGCAA
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTC-ATAAACAGCCAACGGCTTGTGATAA--GT-ATTTCAA-GAG-AAGa
gi|17 : AAGAAGAA-GAGATACAGCGAATTAATTACAGCATAACTTAGTTTATA-TA
gi|18 : AAGTTTATA-TACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACt
gi|2 : gGTTTAA--AT---ATAAAATATATTACAAAA----A-G-TCATTTATAAATATTGTGGAAAA------GAGA---AAAAAATCAAGTTTAGTTGAGTTTTAGAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAGATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAATATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCC-ACTAATAGGCAGCGGCATTTGATAA--GT-ATTTCGA-CAG-AAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTTACA
gi|3 : TACAAACCC-TATA-TCATTTACAACTATTACGAAAGACAGATAAAGA---AAACAAT---ATCTATTTGAGTTTT--------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAGACAGAGCGATTTAGTTGCAGCATAAC--AGTTTATA-TATAGTTATTTTGATAGCTCACT--TCATCCCATGTT---TGCCATCTCGT-AATAACGGCCAGCGGCTCGTGATAACGGT-ATTTCAACCAG-AAGCAGCAGTCAA-CGGCATTTGCAAGTTCTATAACTTTGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAA-A-TCATTGACA----------AAAA------AAAA---CAACAAT---ATTTAGGTGAGTTTTTTATGAGAAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAGATAGAGCGA
gi|5 : GAAGAAAGAAA--GAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAA-CAG-GAGCAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAA
gi|6 : GCGAGTTAGTTGCTGCATACCAAAGTTTATA-TACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCC-AATAACAGCCTGCGGCTCGTTATAA--GTAATTTCAA-CAG-AAGCAGCAATCAACTGGCATTGACAGATTCTACTATTTTGCAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTATA-TACAGTTATTTTGATTGTTCAC-ACTCATC---TGTT---TGGCACCTCCC-TCTAACAGCCAACGGCTCGTGATAA--GT-ATTTCAT-CTG-AAGCAGATGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAacta
gi|8 : TGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCAC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACTGACATTGACAGGTTCTACTATTTTGCAAac
gi|9 : AGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAACAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAAactt
blockSeqs : G C TAGATTCGGCCC C C G CCTATA T AA TGT CAGATA . A CAA AGAA . C T T CCA . A A CG A C C
blockSeqs : . . CTAAAA T AC TAC . . C . TTAT . A T . . . . C . A . .
blockSeqs : AG G . . . . C . . . A C . . . . A . A . .
blockSeqs : A T . . . . A . G . .
blockSeqs : A . . . . . A . A . .
blockSeqs : . . . . . . A . A . .
blockSeqs : . . . . T . A . .
blockSeqs : . . . . T . A . .
blockSeqs : . . . . A . . . .
blockSeqs : . . . . T . . . .
blockSeqs : . . . . T . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : ***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG
Alignments
lowQualScore : 1 444444444444 1 22222222 222222 111 111 1111 111
lowQualScore : 5 1 555555555555 5 6 6 66666666 1 66 555 0 888888 777 1 777 3333 0 777 1 7 3 555 555 2 2 44 7 3 3
lowQualScore : . . ............ . . . ........ . .. ... . ...... ... . ... .... . ... . . . ... ... . . .. . . .
lowQualScore : 0 0 000000000000 0 7 7 00000000 0 22 888 2 888888 555 0 555 2222 8 555 4 1 3 000 000 9 1 22 2 1 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
Reference ( family-2507 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAGCTCTGCNAACTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACC-AA-A-TCATTNACAAATATTACGGAAAA------GAGA---AAANAAT---ATTTAGTTGAGTTTTATAAGAAAGGAAGAGAGAAAG---AGAAGAAGAAGAAAGAGATAGAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCNGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCGGCATTGACAGGTTCTATTATTTTGCAA
gi|1 : CAT-AAGCTCTGCAAACTT------------CTTC-TACAGATTACATAATCGTTTGTTTAACAATGGCACAAACTACATTATAAAATC-AA-AATCATTGACAAATATCATGGAAAA------GAGAGGCAAAAAAA---ATTTAGTCGAGTTTTATAAGAAAGGAAGACAGAAAGTGAAGAAGAAGAAGAAAAATATAGAGCAAATGAAGTGCTGCATAACAAAGTTTATA-TAAAGTTATTTTGATAGTTCACTTCTCATC---TGTTCAGTGGCACCTCCC-ACTAACACCCGGTGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACCTGCATTGACAGGTTCTATTTTTTGGCAA
gi|10 : tagtttaaacatattttatttaaaaaaattatatgaaatgggattggttTTCATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCAGCGGCTCGTGATAA--GTAATTTGAA-CAG-AAGCAGCAGTCAACCGGCATTGACAAGTTCTATTATTTTACAA
gi|11 : tTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGC----GGCTCGTGATAA--GTAATTTCAA-CAG-AAGCGGCAGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAac
gi|12 : GAAGAACGAGA--GAGTGAGTTAGTTGCTGCATAACAAAGTTTATT-TA--GTTATTTTTATAGTTCAATTTTCATC---TGGT---TGGCACCTCCC-ACTAAactt
gi|13 : GTTCACTTGTCATC---TGTT---TGGCACCTCAC-ACTCACAGCCCGCGGATTGTGATAA--GTAATTTCAA-CAG-AAGCAACAGTCA
gi|14 : CT-ACTGACAGCCAGCGACTGGTGATAG--ATGATTT-AA-CAACAAGCAATAGTTAACTGGCAT---CA--------TATTTTGCAA
gi|15 : CACTTCCCATC---TGTT---TGGCACCTTTC-ATAAACAGCCAACGGCTTGTGATAA--GT-ATTTCAA-GAG-AAGa
gi|17 : AAGAAGAA-GAGATACAGCGAATTAATTACAGCATAACTTAGTTTATA-TA
gi|18 : AAGTTTATA-TACAGTTACTTCGATAG-----TTCTCATC---TGTT---TGGCACt
gi|2 : gGTTTAA--AT---ATAAAATATATTACAAAA----A-G-TCATTTATAAATATTGTGGAAAA------GAGA---AAAAAATCAAGTTTAGTTGAGTTTTAGAAGAAAGGAAGAGAGAAAG---AGAAGGAGAAGAAAGAGATAAAGCGAGTTGGTTGTTGCATAACAAAGTTTGTATTATAAATATTTTGATAGTTTGTTTCGCATC---AGTT---TGGCACCTCCC-ACTAATAGGCAGCGGCATTTGATAA--GT-ATTTCGA-CAG-AAGCAGCAGTCAACCGGCATTGATATGTTCTATAATTTTACA
gi|3 : TACAAACCC-TATA-TCATTTACAACTATTACGAAAGACAGATAAAGA---AAACAAT---ATCTATTTGAGTTTT--------GAAAGAGAGAAAG---AGAAGAAGAAGAAAGAGACAGAGCGATTTAGTTGCAGCATAAC--AGTTTATA-TATAGTTATTTTGATAGCTCACT--TCATCCCATGTT---TGCCATCTCGT-AATAACGGCCAGCGGCTCGTGATAACGGT-ATTTCAACCAG-AAGCAGCAGTCAA-CGGCATTTGCAAGTTCTATAACTTTGCAA
gi|4 : CATGAAGTTCTGCCAATTTTAGATTCGGCCCCTTCCTACAGATTACATAATCGTTTGTTTAACAATGGCATAAAATACATTACAAAACTAAA-A-TCATTGACA----------AAAA------AAAA---CAACAAT---ATTTAGGTGAGTTTTTTATGAGAAGAAGGGAGAAAG---AGAAGCAGAAGAAAGAGATAGAGCGA
gi|5 : GAAGAAAGAAA--GAGCGAGTTAGTTGCTGCATAACAAAGTTTATA-TACAGTTATTGTTATAGTTCACTTCTCATC---TGTT---TGGCACCTCCCAAATAACAGCCTGCGGCTTGTGTTAA--GTAATTTCAA-CAG-GAGCAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAA
gi|6 : GCGAGTTAGTTGCTGCATACCAAAGTTTATA-TACAGTTATTTTGACAGTTCACATCTCATC---TGTT---TGGCACCTCCC-AATAACAGCCTGCGGCTCGTTATAA--GTAATTTCAA-CAG-AAGCAGCAATCAACTGGCATTGACAGATTCTACTATTTTGCAAact
gi|7 : AGCGAGTTAGTTGCTGCACAACAAAGTTTATA-TACAGTTATTTTGATTGTTCAC-ACTCATC---TGTT---TGGCACCTCCC-TCTAACAGCCAACGGCTCGTGATAA--GT-ATTTCAT-CTG-AAGCAGATGTCAACCTGCATTGACAGGTTCTATTATTTTGCAAacta
gi|8 : TGCTGCATAACAAAGTTTATA-TACAGTTATTTTGATAGTTCACTTCTTATC---TGTT---TGGCACCTCAC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAGCAGCAGTCAACTGACATTGACAGGTTCTACTATTTTGCAAac
gi|9 : AGTTTATA-TACAGTTATTTTGATAGTTCACTTCTCATC---TGTT---TGGCACCTCCC-ACTAACAGCCTGCGGCTCGTGATAA--GTAATTTCAA-CAG-AAACAGCAGTCAACTGGCATTGACAGGTTCTACTATTTTGCAAactt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCTACTGACAGCCAGCGACTGGTGATAGATGATTTAACAACAAGCAATAGTTAACT
Unaligned ( gi|19 ): ATAAAAAAGTATAAGGAAGGCTCTTTTAATTCGGCGATAG