lowQualScore : 3333333 1 4444444 222222222222 111111 111 1111111111111111 222222222222222222222 222222222 1 222222222222 1111111111111 111 11 11111 2222 1 1
lowQualScore : 5 2 4 55 8888888 2 6 3 8888888 5 66 5 666666666666 5 8888 3 000000 555 3 6666666666666666 2 222222222222222222222 33 33 99999999 99999999 666666666 0 0 55 555555555555 2 7777 2 2 777777 3333333333333 333 444 88 2 555 99999 7 2222 2 4 5 4 88888888 9999999 33 7
lowQualScore : . . . .. ....... . . . ....... . .. . ............ . .... . ...... ... . ................ . ..................... .. .. ........ ........ ......... . . .. ............ . .... . . ...... ............. ... ... .. . ... ..... . .... . . . . ........ ....... .. .
lowQualScore : 2 7 4 44 2222222 7 0 2 4444444 0 99 0 999999999999 1 5555 6 555555 999 1 9999999999999999 9 777777777777777777777 44 44 11111111 11111111 777777777 8 3 11 666666666666 5 8888 5 5 222222 8888888888888 888 444 66 5 666 11111 2 3333 5 0 4 5 77777777 3333333 99 0
consensus : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTCTTT-CAA-AAATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTATTAATTTTAATATAGTTTTTGTG-TTTTG-T--TT-TTT-C------C---TGTATATATCTTTTTAAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAGAG-ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------TTTA-ATT----CCCAAAA-A-TA------GCT-------------ACTTTTCA-TTAACAGTCATTG---ATT-AT-TGTA--TGCA--C--TATATAATTCCCGTTATGAG--NAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATACC
Reference ( gi|3 ) : CAGTTTCCTGAAGACATGCAATCCATTTT-TTT-TTTGTCTTCTTT-AAAGAAATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTGTTCATTTTAATATAGTTTTGGGGATTTTG-T--TT-TTT-C------T---TGTATATATTTTTTTAAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGCGAGAG-ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACATG------------TTTA-ATT----CCCAAAA-A-TA------GCT-------------ACTTTTCA-TAAACAGTCATTG---ATT-TT-TGTA--TGCA--A--TATATAATTCCTGTTATGAG--ATA-TTTTTCAAAAACAATCCCACAGTAATTGA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATTCC
gi|21 : CAGTTTCCTGAAGATATGCGATCCATTTT-TTT-CTTGTCTTCTTT-CAAGAAATTGAAATGATTAATGACAAGC
gi|27 : ccgtcttaCATTTTCCTTAAGATATACAATTTATTTT-TTT-CTTGTCTTCTTT-CATAAAATTGTAATGATTAATGACAAACttataaccgatgagagagagagagagagagagagatg
gi|10 : tcgtattaCAATTACCTGAAGACATGCGATCCATTTT-TTG-TGTGTCTTCTTT----CAAATTATAATGATTAATGACAAA-AAAATttataaccg
gi|25 : attaCAGTAACCTGAAGTCATGCGATCCATTTTATTT-CTTGTTTTCTTT-CAA---ATTATAATGATTAATGACAAACAAAaatacttataactgatatcagagagagagagagagacgacagacattgtttatgattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgattatattaattaatttattattcaattgaattat
gi|26 : atcatatttCAGTTATATGAAGACATGTGATCCATTGC-TTTATTTGTCTTTTTTCAAATAAA----AATGATTAATGACAAACAAAtaatactaataaccgat
gi|32 : tcgtgttaCATTTTTCTGAAGATATGTGATCTACTTT-TTT-CTTGT-TTTTTC-A--------------ATTAATGACAAACtaatacttataaccgata
gi|30 : ctttgttaAGTTGATTAAAGACATGCGATCCATTAG-TTC-TT-GTCTTCTTT-CAA---ATTATAATGATTAATGACAAACttatnnnn
gi|23 : atcctgttgtGTTTCCTGATAATAGGCGATCCATTTT-TTT-CTTGTCTTCTTT-CAAGACATTGTAAg
gi|24 : tactTTACCTGAAGACATGCAATCCATTTT-TTT-CTTGTCTTCTTT---TCAAATTATAATGATTAATGACAAAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggggggaggg
gi|2 : atcgtaccggtattactaATTTATTAATTTTAATATAGTTTTTGTG---TTGAT--TT-TTT-C------C---TGTATTTATCTATTTAAACGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAGAG-ATGTAT------A---------TAATGA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TAAAAAAATATTAAATTGAATTATAAATCATACATG------------TTTA-ATT----CCCAAAA-A-TA------GCT-------------ACTTTTCA-TTAACAGTCATTG---GTT-AT-TGTA--TGCA--C--TATATAATTCCCGTTATGAG--TAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAACTAT-------CTAATTA--CTTTCCAATATTTCATTAGAAATACCctacttataact
gi|8 : tATTTATTAATTTTAATATAGTTTTTGTGATGTTT-T--TTGTTT-T------C---TGTATATATCTTTTTAAAAGTATC----GTCTTGA-GA------GATAGAACGAG--TGAGAG-ATGTAT------A---------TGATTA-TATTCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------TTTA-ATT----TCCAAAA-A-TA------GCT-------------ACTTTTCA-ATAACAGTCATTG---ATT-AG-TGTA--AACA--C--TATATAATTCTCGTTATGAG--AAA-TGTATCAATAACAATCCTGCAGTGATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataacggggcaggatttacatggggccggatattccata
gi|7 : ATTTATTAATTTTAATATAGTTTTTAAGTTGTTG-T--TT-TTTTC------C---TGTATATATATTTT-AAAGGTATC----GTCTCGA-GA------GATAGAACGAGAAAGAGAG-ATGTAT------A---------TAACTA-TATCCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------TTTA-ATT----CCCAAAA-A-TA------GCT-------------ACTTTTCA-ATAACAGCCATTG---GTT-AT-TGTA--AGCA--C--TATATATTTCCCGTTATGAG--AAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCCTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATACCac
gi|11 : tTATTAATTTTAATATAGTTTT---------------T-TTT-C------TGTATATATATATCTTTTTAAAAATATC----GTCTTGA-GA------GATAGAACGGAGGAGAGAG-AT------------------------------TCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACATG------------TTAA-ATT----CCAAAAA-A-TA------GCT-------------ACTTTTCAATAA---GTCATTG---AGT-AT-TGTA--TGCA--C--TATGTAATTCCCGTTATGAG--AAA-TATTTCAATAACAATCCTGCAGTAATTAA------TATGTGTGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATACC
gi|9 : aTTTATTTTAATATAGTTTTTGTG-TTATT-T--TT-TTT-C------C---TGTATATATCTTTTTAAAAGTATC----GTATTGA-GA------GATAGAACGAGTGAGAGAG-ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTAAGATT--AT--ATTA--------AT--------TA------------ATC-AATTATAAATCATACGTG------------TTTA-ATT----CCCAAAAAA-TA------GCT-------------ACTTTTCA-ATAGCAGTCATTG---ATT-AT-TGTA--AGCA--C--TATATAATTCCCGTTATGAG--AAA-TATTTCAAACACATTCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCAATAGAAAT
gi|1 : aATAGTTTTTGTG-TTTTG-T--TT-TTT--------T---TATATCT-TTTTCTTGTAAATATCTTTGATTTTAATGA------GAGAGG--GAGAGCAAGCG-ACGTAT------A---------TAATTA-TATT-AT---------------------TTTCTATAGCC--AT---TC----------T--------TA--------TTAAATTGAATTATAAATCATATGTGTGTTTTGTCCAATTTA-ATC----TCCCAAA-A-CA------GTT-------------AC-TTTCA-TTAACAATCATTG---ATT-AT-TATATGTGTA--C--TATGTAATTCCCGTTACCAGTCAT--TTTTTCAATAACAATCCCGCAGTCATTac
gi|13 : agttaacgttttttaaaaattaaaggtaaacctgattactcgggttgtgcattgtgtaaactgtgctgcattctatttttatcaaagaagtagacaTTTTG-T--TT-TTT-C------T---TGTTTATACTTTTTTAAAAGTATC----GTCTTGA-GA------GGTAGTATGAG---------ATGTAT------A---------TAATTA-TATGCAT---------------------TGTCTATGATT--A-----------------------------------TTAAATTGAATTATAAATTATACGTG------------TTTA-ATT----CCTAAAA-A-TA------GTT-------------ACTTTTCC-TTAACAGTCATTGACTATT-AT-TGTA--TGCA--T--TATATAATTCCCGTT--------TA-TCATT----AACAATCCTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccagatttgcgtggggccggattgtccat
gi|6 : tttgtatTTTG-TGCTT-TTT-TATCAAAT---TGTTCATATCATTTTAACATTATC----GTTTTGA-GAAATACTGATAGAAAGAGGGAGGGATCATGTAC------AATAAATTATTAATTT-TATTTAT---------------------TTTTAATGATT--AA--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCAT---TA------------GTTA-CTT----TTTAAAA-ACTATCCCTCGTTGATTATCAAATGAATTTTTTA-TAAA---TCTTAA---ATTGTT-TCTA-----A--C--TACATAATTTCTGAAATGAG--TGA-CATTCCAATAACAATCCCTCATTGACCAAAAGGCCTATGTCTATTTCAAATCATCCGTTTACTATTAAATATTTCC---ATTTCATTACAAAT
gi|5 : ttacttaatttaaatgTATATATTCTCAAAAGTATC----GTCTTGA-GA------GATATAACGAGGGAGAGAG-ATGTATATAACTA---------TAATCATTGTTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN--NNNN--------NN--------NN--------NNNNATTGAATTATAAATCATAAGTG------------TTTA-ATT----CCCAAAA-A-TA------GTT-------------ACTTTT-A-TAAACAATCAATG---ATT-AT-TATA--TGCA--C--AATATAATTCCCGTTATGAG--TCA-TTTT-CAATAACAATCTCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTCCCAATATTTCATTAaca
gi|14 : gatatacagacaaacggacgggcgaacggacggacggccggccggcaagcagacaggtagacagatattactttataattcaaatatagtttAAAAGTATC----GTCTTGA-GA------GATATAACGAAGGAGAAAG-ATGTAT------A---------TTATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------ATTAACTAATTA--------TTAAACTGAATTATAAATCATACGTG------------TTTA-ATT----CCTAAAA-A-TA------GTT-------------GCTTTTCA-TTAACAGTGATTG---ATT-AT-TGTA--TGCA--T--TATATTATTTC-------AG------TTTTTCAATAAAAATACTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------GTAATAA--CTTTCCAATATCTTATTGGAAATACCtttcattagaaatacca
gi|4 : aGA-GA------GAGAGA--GAGGA-GAGAG-A-GTCT-----------------------T-TTCAT---------------------TTTCTATAGTC--AT---TC----------T--------TA--------TTAAATTTCATTATAAATCATAAGTGTGTTTTGTCCGATTTA-ATC----CCCCAAA-A-CA------GTT-------------AC-TTTCA-TTAACAATCATTG---ATT-AT-TATA--TGTG--AACTATGTAATTCCCGTTACCAG--TCA-TTTT---ATAACAATCCCACAGTAATT
gi|15 : gagaataaggggggGATAG-ATGCAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------ATTAATT-AATTATAAATCATACGTG------------TTAA-ATT----CCCAAAA-A-TA------GCT-------------ACTTTTCA-ATAACATTCATTG---ATT-AT-TGTA--AGCT--C--TATATAATTCCCGTTATGAG--AAA-TATTTCAATAACAATCCCGCAGTAATTA--------ATGTGCATTTCAAATTAT-------CTAATAA--TTTTCCAATATTTCATTACAAATannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccggatttgcgtggggccggatttgcgtggggccagattgtccataac
gi|19 : aAGAT-ATGTAT------A---------TAATTA-CATTAAT---------------------TGTTTATGATTCTATTAATTA--------AT--------TA--------TTAAATTGAATTATAATTCATAAGTG------------TTTA-ATTCCCCCCCAAAA-A-----------T-------------ACTTTTTA-TTAACAATCATTG---ATTATTATATA--TGCACTA--TATATAATTCCCGTTATGAG---TAGTTTTTCAATAACAATCCCGCAGTAATTac
gi|16 : TGTAT------G---------TAATTA-TATTCAT---------------------TGTTAATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------TTTA-ATT----CCCAAAA-A-TA------GCT-------------ACTTTTCA-ATAACAGTTTTTG---ATT-AT-TGTA--AGCA--C--TATATAATTCCCGTTATGAG--AAA-AATTTCAATAACAATCCCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATACCa
gi|17 : AT---------------------TGTTAATGATT--AT--ATTAATTAATTAAT--------TA--------TTAAATTGAATTATAAATCGTAAGTA------------TTTC-ATTC---CCCCAAA-A-T-------GTT-------------ACTTTTCA-TTAACATTCATTG---ATT-AT-TATA--TGCA--C--TATATAACTCCCGTTAAGAG--TAA-GTTTTCAATAACAATCCCCCTGTAATTAA------TAAGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAA
gi|18 : TTTATGATT--AT--ATTA--------AT--------TAATTAATTATTAAATTGAATTATAAATCATAAGTA------------TTTCTATC----TCCCAAA-A-T-------GTT-------------ACTTTTCA-TTAACAATCATT-----------------TGCA--C--TATATAATTCCCGTTAAGAG--TAA-GTTTTCAATAACAATCCCACTGGAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATaacca
gi|28 : TTTTCAATAACAATCCCACTGTAATTAA------TATGTGCATTTCAAATTAT-------CTAATAA--CTTTCCAATATTTCATTAGAAATACCa
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GCACATTGTAATAACAAGTATACGGGTTTTTTAATGTTTAAACAATTAAGTTAACGGTTTTTAAAAATTAAAGGTAAACTTGTTTAATTTTTTATTGTAGTGTTTTGTTTTCCCCTTTATATATATTATTTAATATTGAGGGAAAGACATAGTCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAGGGGCCGGATTTACATGGGGCCGA
Unaligned ( gi|22 ): CAGATTAGAATATATTATCATAAAATGTTTCATTGACAGATGAACGTACGGACGGACGGACGGACGGACAGGCATACAGACAGAGTTTTTCCTTTATGAAACTTAAAAAT
Unaligned ( gi|29 ): ATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATATAT
Unaligned ( gi|31 ): ACTGAAATATATGTGTTAACTATATCAGACAATCAGACGGACGGACGGATGGACGGACGGACGGGCAGACAGGCAGGC
Unaligned ( gi|33 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
Unaligned ( gi|34 ): ACATATGAGCACCTAGGACGGACAGACAGACGAAATAGCAGACAGACAGACTTTTTACCCTTA
Alignments
lowQualScore : 222222222 55555555555555555555555555555555555555555555555555555 1111111111111 111111 1111111111111111 222222222222222222222 222222222 1111111111111111111111111 1111111111
lowQualScore : 1 4 4 4 111111111 1 33333333333333333333333333333333333333333333333333333 5 7777777777777 222222 666 7777 3 999999 33 66 5555555555555555 2 111111111111111111111 33 333 88888888 88888888 666666666 0 9 6666666666666666666666666 2 7777 2 0 2 777 33 3333333333 99999 33 2 666 777777 8888888 33 99999999
lowQualScore : . . . . ......... . ..................................................... . ............. ...... ... .... . ...... .. .. ................ . ..................... .. ... ........ ........ ......... . . ......................... . .... . . . ... .. .......... ..... .. . ... ...... ....... .. ........
lowQualScore : 0 0 0 0 111111111 4 00000000000000000000000000000000000000000000000000000 7 3333333333333 222222 444 7777 3 666666 99 88 2222222222222222 7 222222222222222222222 22 555 55555555 55555555 000000000 2 1 5555555555555555555555555 4 4444 4 2 4 444 22 5555555555 11111 22 6 999 777777 7777777 77 77777777
consensus : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTGA---TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
Reference ( family-250 ) : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTGA---TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|1 : ATAGTTTTTGTG-----TT-TT-G-TTTTTT-T--------TATATCTTTTTCTTGTAAATATCTTTGATTTTAATGA------GA------GAGGGAGAGCAAGCGACGTAT------A---------TAATTA-TATT-AT---------------------TTTCTATAGCC--AT---TC----------T--------TA--------TTAAATTGAATTATAAATCATATGTG------------TGTTTTGTCCAATTTA-ATC----TCCCAAA-ACAGTTACTTT-CATTAACAATC-ATTGA---TTAT--TATATG--------TGT-----AC--TATGTAATTCCCGTTACCAGTCATTTTTTCAATAACAATCCCGCAGTCATTA
gi|10 : agttaacgttttttaaaaattaaaggtaaacctgattactcgggttgtgcattgtgtaaactgtgctgcattctatttttatcaaagaagtagacaCAATTACCTGAAGACATGCGATCCATTTT-TTG-TGTGTCTTC-TTTC----A--A-ATTATAATGATTAATGACAAA-AAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccagatttgcgtggggccggattgtccat
gi|11 : attaTA-TTAATTTTAATATAGTTTTT----------------TTTCTG-T---ATATATATATCTTTTT---AAAAATATC----GTCTTGA-GA------GATAGAACGGAGGAGAG--AG--AT------------------------------TCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACATG------------T------------TAA-ATT----CCAAAAA-ATAGCTACTTTTCAATAA--GTC-ATTGA---GTAT--TGTA----------TGC-----AC--TATGTAATTCCCGTTATGAGAAA-TATTTCAATAACAATCCTGCAGTAATTAA------TATGTGTGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCaatacttataactgatatcagagagagagagagagacgacagacattgtttatgattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgattatattaattaatttattattcaattgaattat
gi|13 : aTTTGTA-----TT-TTTG-TTTTTT-C---TTGTTTATACTTTTTT---AAAAGTATC----GTCTTGA-GA------GGTAGTATGAG------------ATGTAT------A---------TAATTA-TATGCAT---------------------TGTCTATGATT--AT-----------------------------------TAAATTGAATTATAAATTATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTACTTTTCCTTAACAGTC-ATTGACTATTAT--TGTA----------TGC-----AT--TATATAATTCCCGTT-----------TATCATTAACAATCCTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAT
gi|14 : ---AAAAGTATC----GTCTTGA-GA------GATATAACGAAGGAGAA--AG--ATGTAT------A---------TTATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------ATTAACTAATTA--------TTAAACTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTGCTTTTCATTAACAGTG-ATTGA---TTAT--TGTA----------TGC-----AT--TATATTATTTCAGTT-----------TTTCAATAAAAATACTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------GTAATAA--CTTTCCAA--------TATCTTATTGGAAATACC
gi|15 : aAGAT--AG--ATGCAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------ATTAATT-AATTATAAATCATACGTG------------T------------TAA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACATTC-ATTGA---TTAT--TGTA----------AGC-----TC--TATATAATTCCCGTTATGAGAAA-TATTTCAATAACAATCCCGCAGTAATTA--------ATGTGCATTTCAAATTAT-------CTAATAA--TTTTCCAA--------TATTTCATTACAAATAC
gi|16 : TGTAT------G---------TAATTA-TATTCAT---------------------TGTTAATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGTT-TTTGA---TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAA-AATTTCAATAACAATCCCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|17 : AT---------------------TGTTAATGATT--AT--ATTAATTAATTAAT--------TA--------TTAAATTGAATTATAAATCGTAAGTA------------T------------TTC-ATTC---CCCCAAA-AT-GTTACTTTTCATTAACATTC-ATTGA---TTAT--TATA----------TGC-----AC--TATATAACTCCCGTTAAGAGTAA-GTTTTCAATAACAATCCCCCTGTAATTAA------TAAGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAAAACC
gi|18 : TTTATGATT--AT--ATTA--------AT--------TAATTAATTATTAAATTGAATTATAAATCATAAGTA------------T------------TTCTATC----TCCCAAA-AT-GTTACTTTTCATTAACAATC-ATT-------------------------TGC-----AC--TATATAATTCCCGTTAAGAGTAA-GTTTTCAATAACAATCCCACTGGAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAa
gi|19 : AG--AT--ATGTAT------A---------TAATTA-CATTAAT---------------------TGTTTATGATTCTATTAATTA--------AT--------TA--------TTAAATTGAATTATAATTCATAAGTG------------T------------TTA-ATTCCCCCCCAAAA-A----TACTTTTTATTAACAATC-ATTGA---TTATTATATA----------TGC-----ACTATATATAATTCCCGTTATGAGTAG-TTTTTCAATAACAATCCCGCAGTAATTA
gi|2 : ATTTA-TTAATTTTAATATAGTTTTTGTG-----TT----GATTTTTT-C---CTGTATTTATCTATTT---AAACGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATGA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TAAAAAAATATTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTGG---TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGTAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAACTAT-------CTAATTA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|21 : tCAGTTTCCTGAAGATATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-AGA--A-ATTGAAATGATTAATGACAAGCaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataacggggcaggatttacatggggccggatattccata
gi|23 : ccgtcttaGTTTCCTGATAATAGGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-G--ACATTGTAAttataaccgatgagagagagagagagagagagagatg
gi|24 : tactTTACCTGAAGACATGCAATCCATTTT-TTT-CTTGTCTTCTTTTC----A--A-ATTATAATGATTAATGACAAAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggggggaggg
gi|25 : atcgtaccggtattactaCAGTAACCTGAAGTCATGCGATCCATTTTATTT-CTTGTTTTC-TTTCA-A-A-----TTATAATGATTAATGACAAACAAActacttataact
gi|26 : atcatatttCAGTTATATGAAGACATGTGATCCATTGC-TTTATTTGTCTTT-TTTCA-A-ATAA-A----AATGATTAATGACAAACAAAtaatactaataaccgat
gi|27 : tcgtgttaCATTTTCCTTAAGATATACAATTTATTTT-TTT-CTTGTCTTC-TTTCATA-A--A-ATTGTAATGATTAATGACAAACtaatacttataaccgata
gi|28 : tcgtattaGAGTAA-GTTTTCAATAACAATCCCACTGTAATTAA------TATGTGCATTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCttataaccg
gi|3 : aaCAGTTTCCTGAAGACATGCAATCCATTTT-TTT-TTTGTCTTC-TTTAA-AGA--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTG-TTCATTTTAATATAGTTTTGGGGA----TT-TT-G-TTTTTT-C---TTGTATATATTTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGCGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATAAACAGTC-ATTGA---TTTT--TGTA----------TGC-----AA--TATATAATTCCTGTTATGAGATA-TTTTTCAAAAACAATCCCACAGTAATTGA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATTCC
gi|30 : AGTTGATTAAAGACATGCGATCCATTAG-TT--CTTGTCTTC-TTTCA-A-A-----TTATAATGATTAATGACAAAC
gi|32 : atcctgttgtCATTTTTCTGAAGATATGTGATCTACTTT-TTT-CTTG--TTT-TTTCA-----------------ATTAATGACAAACg
gi|4 : ctttgttaGA-GA------GAGAGA--GAGG-AGAG--AG--A-GTCT----------------T--------TTCAT---------------------TTTCTATAGTC--AT---TC----------T--------TA--------TTAAATTTCATTATAAATCATAAGTGTGTTTTGTCCGAT------------TTA-ATC----CCCCAAA-ACAGTTAC-TTTCATTAACAATC-ATTGA---TTAT--TATA----------TGTGA---AC--TATGTAATTCCCGTTACCAGTCA-TTTT---ATAACAATCCCACAGTAATTAttatnnnn
gi|5 : gagaataaggggggTATATATTCTC---AAAAGTATC----GTCTTGA-GA------GATATAACGAGGGAGAG--AG--ATGTATATAACTA---------TAATCATTGTTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN--NNNN--------NN--------NN--------NNNNATTGAATTATAAATCATAAGTG------------T------------TTA-ATT----CCCAAAA-ATAGTTACTTTT-ATAAACAATC-AATGA---TTAT--TATA----------TGC-----AC--AATATAATTCCCGTTATGAGTCA-T-TTTCAATAACAATCTCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTCCCAATATTTCATTATTTCATTAGAAATACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccggatttgcgtggggccggatttgcgtggggccagattgtccataac
gi|6 : gatatacagacaaacggacgggcgaacggacggacggccggccggcaagcagacaggtagacagatattactttataattcaaatatagtttTTACTTAATTTAAATGT-----TTGTG-----CT-TT----TTTAT-CAAATTGTTCATATCATTTT---AACATTATC----GTTTTGA-GAAATACTGATAGAAAGAGGGAGGG--ATC-ATGTAC------AATAAATTATTAATTT-TATTTAT---------------------TTTTAATGATT--AA--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCAT---TA------------G------------TTA-CTT----TTTAAAA-A---CTATCCCTCGTTGATTATCAAATGAAT-TTTT--TATAAATCTTAAATTGTTTCTAAC--TACATAATTTCTGAAATGAGTGA-CATTCCAATAACAATCCCTCATTGACCAAAAGGCCTATGTCTATTTCAAATCATCCGTTTACTATTAAATATTTCC-----------ATTTCATTACAAATACa
gi|7 : ATTTA-TTAATTTTAATATAGTTTTTAAG-----TTGTT-G-TTTTTTTC---CTGTATATATATTTT----AAAGGTATC----GTCTCGA-GA------GATAGAACGAGAAAGAG--AG--ATGTAT------A---------TAACTA-TATCCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGCC-ATTGG---TTAT--TGTA----------AGC-----AC--TATATATTTCCCGTTATGAGAAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCCTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCa
gi|8 : tATTTA-TTAATTTTAATATAGTTTTTGTGATGTTTT-TT-G-TTTT-------CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGTGAGAG--A----TGTAT------A---------TGATTA-TATTCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----TCCAAAA-ATAGCTACTTTTCAATAACAGTC-ATTGA---TTAG--TGTA----------AAC-----AC--TATATAATTCTCGTTATGAGAAA-TGTATCAATAACAATCCTGCAGTGATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAC
gi|9 : A-TTTATTTTAATATAGTTTTTGTG-----TT-AT-T-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTATTGA-GA------GATAGAACGAGTGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTAAGATT--AT--ATTA--------AT--------TA------------ATC-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAAAATAGCTACTTTTCAATAGCAGTC-ATTGA---TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAA-TATTTCAAACACATTCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAATAGAAATAC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GCACATTGTAATAACAAGTATACGGGTTTTTTAATGTTTAAACAATTAAGTTAACGGTTTTTAAAAATTAAAGGTAAACTTGTTTAATTTTTTATTGTAGTGTTTTGTTTTCCCCTTTATATATATTATTTAATATTGAGGGAAAGACATAGTCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAGGGGCCGGATTTACATGGGGCCGA
Unaligned ( gi|22 ): CAGATTAGAATATATTATCATAAAATGTTTCATTGACAGATGAACGTACGGACGGACGGACGGACGGACAGGCATACAGACAGAGTTTTTCCTTTATGAAACTTAAAAAT
Unaligned ( gi|29 ): ATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATATAT
Unaligned ( gi|31 ): ACTGAAATATATGTGTTAACTATATCAGACAATCAGACGGACGGACGGATGGACGGACGGACGGGCAGACAGGCAGGC
Unaligned ( gi|33 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
Unaligned ( gi|34 ): ACATATGAGCACCTAGGACGGACAGACAGACGAAATAGCAGACAGACAGACTTTTTACCCTTA
Alignments
lowQualScore : 222222222 3333333333333333333333333333333333 2222222222222 111111 1111111111111111 222222222222222222222 222222222 1111111111111111111111111 1111111111
lowQualScore : 1 4 4 4 111111111 1 4444444444444444444444444444444444 5 0 3333333333333 0 444444 0 666 7777 3 999999 33 66 5555555555555555 2 111111111111111111111 33 33 88888888 88888888 444444444 0 9 6666666666666666666666666 2 7777 2 0 2 444 33 33 3333333333 99999 33 2 666 777777 8888888 33 99999999
lowQualScore : . . . . ......... . .................................. . . ............. . ...... . ... .... . ...... .. .. ................ . ..................... .. .. ........ ........ ......... . . ......................... . .... . . . ... .. .. .......... ..... .. . ... ...... ....... .. ........
lowQualScore : 0 0 0 0 111111111 4 0000000000000000000000000000000000 0 8 1111111111111 9 000000 7 444 7777 3 666666 99 88 2222222222222222 7 222222222222222222222 22 22 55555555 55555555 666666666 2 1 5555555555555555555555555 4 4444 4 2 4 111 22 22 5555555555 11111 22 6 999 777777 7777777 77 77777777
consensus : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---A--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
Reference ( family-250 ) : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---A--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|1 : ATAGTTTTTGTG-----TT-TT-G-TTTTTT-T--------TATATCTTTTTCTTGTAAATATCTTTGATTTTAATGA------GA------GAGGGAGAGCAAGCGACGTAT------A---------TAATTA-TATT-AT---------------------TTTCTATAGCC--AT---TC----------T--------TA--------TTAAATTGAATTATAAATCATATGTG------------TGTTTTGTCCAATTTA-ATC----TCCCAAA-ACAGTTACTTT-CATTAACAATC-ATTG---A--TTAT--TATATG--------TGT-----AC--TATGTAATTCCCGTTACCAGTCATTTTTTCAATAACAATCCCGCAGTCATTA
gi|10 : agttaacgttttttaaaaattaaaggtaaacctgattactcgggttgtgcattgtgtaaactgtgctgcattctatttttatcaaagaagtagacaCAATTACCTGAAGACATGCGATCCATTTT-TTG-TGTGTCTTC-TTTC----A--A-ATTATAATGATTAATGACAAA-AAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccagatttgcgtggggccggattgtccat
gi|11 : attaTA-TTAATTTTAATATAGTTTTT----------------TTTCTG-T---ATATATATATCTTTTT---AAAAATATC----GTCTTGA-GA------GATAGAACGGAGGAGAG--AG--AT------------------------------TCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACATG------------T------------TAA-ATT----CCAAAAA-ATAGCTACTTTTCAATAA--GTC-ATTG---A--GTAT--TGTA----------TGC-----AC--TATGTAATTCCCGTTATGAGAAA-TATTTCAATAACAATCCTGCAGTAATTAA------TATGTGTGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCaatacttataactgatatcagagagagagagagagacgacagacattgtttatgattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgattatattaattaatttattattcaattgaattat
gi|13 : aTTTGTA-----TT-TTTG-TTTTTT-C---TTGTTTATACTTTTTT---AAAAGTATC----GTCTTGA-GA------GGTAGTATGAG------------ATGTAT------A---------TAATTA-TATGCAT---------------------TGTCTATGATT--A-----------------------------------TTAAATTGAATTATAAATTATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTACTTTTCCTTAACAGTC-ATTGACTA--TTAT--TGTA----------TGC-----AT--TATATAATTCCCGTT-----------TATCATTAACAATCCTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAT
gi|14 : ---AAAAGTATC----GTCTTGA-GA------GATATAACGAAGGAGAA--AG--ATGTAT------A---------TTATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------ATTAACTAATTA--------TTAAACTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTGCTTTTCATTAACAGTG-ATTG---A--TTAT--TGTA----------TGC-----AT--TATATTATTTCAGTT-----------TTTCAATAAAAATACTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------GTAATAA--CTTTCCAA--------TATCTTATTGGAAATACC
gi|15 : aAGAT--AG--ATGCAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------ATTAATT-AATTATAAATCATACGTG------------T------------TAA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACATTC-ATTG---A--TTAT--TGTA----------AGC-----TC--TATATAATTCCCGTTATGAGAAA-TATTTCAATAACAATCCCGCAGTAATTA--------ATGTGCATTTCAAATTAT-------CTAATAA--TTTTCCAA--------TATTTCATTACAAATAC
gi|16 : TGTAT------G---------TAATTA-TATTCAT---------------------TGTTAATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGTT-TTTG---A--TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAA-AATTTCAATAACAATCCCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|17 : AT---------------------TGTTAATGATT--AT--ATTAATTAATTAAT--------TA--------TTAAATTGAATTATAAATCGTAAGTA------------T------------TTC-ATTC---CCCCAAA-AT-GTTACTTTTCATTAACATTC-ATTG---A--TTAT--TATA----------TGC-----AC--TATATAACTCCCGTTAAGAGTAA-GTTTTCAATAACAATCCCCCTGTAATTAA------TAAGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAAAACC
gi|18 : TTTATGATT--AT--ATTA--------AT--------TAATTAATTATTAAATTGAATTATAAATCATAAGTA------------T------------TTCTATC----TCCCAAA-AT-GTTACTTTTCATTAACAATC-ATT---------------------------TGC-----AC--TATATAATTCCCGTTAAGAGTAA-GTTTTCAATAACAATCCCACTGGAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAa
gi|19 : AG--AT--ATGTAT------A---------TAATTA-CATTAAT---------------------TGTTTATGATTCTATTAATTA--------AT--------TA--------TTAAATTGAATTATAATTCATAAGTG------------T------------TTA-ATTCCCCCCCAAAA-A----TACTTTTTATTAACAATC-ATTG---A--TTATTATATA----------TGC-----ACTATATATAATTCCCGTTATGAGTAG-TTTTTCAATAACAATCCCGCAGTAATTA
gi|2 : ATTTA-TTAATTTTAATATAGTTTTTGTG-----TT----GATTTTTT-C---CTGTATTTATCTATTT---AAACGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATGA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TAAAAAAATATTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---G--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGTAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAACTAT-------CTAATTA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|21 : tCAGTTTCCTGAAGATATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-AGA--A-ATTGAAATGATTAATGACAAGCaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataacggggcaggatttacatggggccggatattccata
gi|23 : ccgtcttaGTTTCCTGATAATAGGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-G--ACATTGTAAttataaccgatgagagagagagagagagagagagatg
gi|24 : tactTTACCTGAAGACATGCAATCCATTTT-TTT-CTTGTCTTCTTTTC----A--A-ATTATAATGATTAATGACAAAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggggggaggg
gi|25 : atcgtaccggtattactaCAGTAACCTGAAGTCATGCGATCCATTTTATTT-CTTGTTTTC-TTTCA-A-A-----TTATAATGATTAATGACAAACAAActacttataact
gi|26 : atcatatttCAGTTATATGAAGACATGTGATCCATTGC-TTTATTTGTCTTT-TTTCA-A-ATAA-A----AATGATTAATGACAAACAAAtaatactaataaccgat
gi|27 : tcgtgttaCATTTTCCTTAAGATATACAATTTATTTT-TTT-CTTGTCTTC-TTTCATA-A--A-ATTGTAATGATTAATGACAAACtaatacttataaccgata
gi|28 : tcgtattaGAGTAA-GTTTTCAATAACAATCCCACTGTAATTAA------TATGTGCATTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCttataaccg
gi|3 : aaCAGTTTCCTGAAGACATGCAATCCATTTT-TTT-TTTGTCTTC-TTTAA-AGA--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTG-TTCATTTTAATATAGTTTTGGGGA----TT-TT-G-TTTTTT-C---TTGTATATATTTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGCGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATAAACAGTC-ATTG---A--TTTT--TGTA----------TGC-----AA--TATATAATTCCTGTTATGAGATA-TTTTTCAAAAACAATCCCACAGTAATTGA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATTCC
gi|30 : AGTTGATTAAAGACATGCGATCCATTAG-TT--CTTGTCTTC-TTTCA-A-A-----TTATAATGATTAATGACAAAC
gi|32 : atcctgttgtCATTTTTCTGAAGATATGTGATCTACTTT-TTT-CTTG--TTT-TTTCA-----------------ATTAATGACAAACg
gi|4 : ctttgttaGA-GA------GAGAGA--GAGG-AGAG--AG--A-GTCT----------------T--------TTCAT---------------------TTTCTATAGTC--AT---TC----------T--------TA--------TTAAATTTCATTATAAATCATAAGTGTGTTTTGTCCGAT------------TTA-ATC----CCCCAAA-ACAGTTAC-TTTCATTAACAATC-ATTG---A--TTAT--TATA----------TGTGA---AC--TATGTAATTCCCGTTACCAGTCA-TTTT---ATAACAATCCCACAGTAATTAttatnnnn
gi|5 : gagaataaggggggATATTACTTTA-T-AATTCAAATATAGTTTT--------------------------------ATATAT--TCTC---AAAAGTATC----GTCTTGA-GA------GATATAACGAGGGAGAG--AG--ATGTATATAACTA---------TAATCATTGTTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN--NNNN--------NN--------NN--------NNNNATTGAATTATAAATCATAAGTG------------T------------TTA-ATT----CCCAAAA-ATAGTTACTTTT-ATAAACAATC-AATG---A--TTAT--TATA----------TGC-----AC--AATATAATTCCCGTTATGAGTCA-T-TTTCAATAACAATCTCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTCCCAATATTTCATTATTTCATTAGAAATACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccggatttgcgtggggccggatttgcgtggggccagattgtccataac
gi|6 : gatatacagacaaacggacgggcgaacggacggacggccggccggcaagcagacaggtagacagTTACTTAATTTAAATGT-----TTGTG-----CT-TT----TTTAT-CAAATTGTTCATATCATTTT---AACATTATC----GTTTTGA-GAAATACTGATAGAAAGAGGGAGGG--ATC-ATGTAC------AATAAATTATTAATTT-TATTTAT---------------------TTTTAATGATT--AA--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCAT---TA------------G------------TTA-CTT----TTTAAAA-A---CTATCCCTCGTTGATTATCAAATG---AATTTTT--TATAAATCTTAAATTGTTTCTAAC--TACATAATTTCTGAAATGAGTGA-CATTCCAATAACAATCCCTCATTGACCAAAAGGCCTATGTCTATTTCAAATCATCCGTTTACTATTAAATATTTCC-----------ATTTCATTACAAATACa
gi|7 : ATTTA-TTAATTTTAATATAGTTTTTAAG-----TTGTT-G-TTTTTTTC---CTGTATATATATTTT----AAAGGTATC----GTCTCGA-GA------GATAGAACGAGAAAGAG--AG--ATGTAT------A---------TAACTA-TATCCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGCC-ATTG---G--TTAT--TGTA----------AGC-----AC--TATATATTTCCCGTTATGAGAAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCCTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCa
gi|8 : tATTTA-TTAATTTTAATATAGTTTTTGTGATGTTTT-TT-G-TTTT-------CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGTGAGAG--A----TGTAT------A---------TGATTA-TATTCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----TCCAAAA-ATAGCTACTTTTCAATAACAGTC-ATTG---A--TTAG--TGTA----------AAC-----AC--TATATAATTCTCGTTATGAGAAA-TGTATCAATAACAATCCTGCAGTGATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAC
gi|9 : A-TTTATTTTAATATAGTTTTTGTG-----TT-AT-T-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTATTGA-GA------GATAGAACGAGTGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTAAGATT--AT--ATTA--------AT--------TA------------ATC-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAAAATAGCTACTTTTCAATAGCAGTC-ATTG---A--TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAA-TATTTCAAACACATTCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAATAGAAATAC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GCACATTGTAATAACAAGTATACGGGTTTTTTAATGTTTAAACAATTAAGTTAACGGTTTTTAAAAATTAAAGGTAAACTTGTTTAATTTTTTATTGTAGTGTTTTGTTTTCCCCTTTATATATATTATTTAATATTGAGGGAAAGACATAGTCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAGGGGCCGGATTTACATGGGGCCGA
Unaligned ( gi|22 ): CAGATTAGAATATATTATCATAAAATGTTTCATTGACAGATGAACGTACGGACGGACGGACGGACGGACAGGCATACAGACAGAGTTTTTCCTTTATGAAACTTAAAAAT
Unaligned ( gi|29 ): ATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATATAT
Unaligned ( gi|31 ): ACTGAAATATATGTGTTAACTATATCAGACAATCAGACGGACGGACGGATGGACGGACGGACGGGCAGACAGGCAGGC
Unaligned ( gi|33 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
Unaligned ( gi|34 ): ACATATGAGCACCTAGGACGGACAGACAGACGAAATAGCAGACAGACAGACTTTTTACCCTTA
Alignments
lowQualScore : 222222222 3333333333333333333333333333333333 2222222222222 111111 1111111111111111 222222222222222222222 222222222 1111111111111111111111111 1111111111
lowQualScore : 1 4 4 4 111111111 1 4444444444444444444444444444444444 5 0 3333333333333 0 444444 0 666 7777 3 999999 33 66 5555555555555555 2 111111111111111111111 33 33 88888888 88888888 444444444 0 9 6666666666666666666666666 2 7777 2 0 2 444 33 33 3333333333 99999 33 2 666 777777 8888888 33 99999999
lowQualScore : . . . . ......... . .................................. . . ............. . ...... . ... .... . ...... .. .. ................ . ..................... .. .. ........ ........ ......... . . ......................... . .... . . . ... .. .. .......... ..... .. . ... ...... ....... .. ........
lowQualScore : 0 0 0 0 111111111 4 0000000000000000000000000000000000 0 8 1111111111111 9 000000 7 444 7777 3 666666 99 88 2222222222222222 7 222222222222222222222 22 22 55555555 55555555 666666666 2 1 5555555555555555555555555 4 4444 4 2 4 111 22 22 5555555555 11111 22 6 999 777777 7777777 77 77777777
consensus : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---A--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
Reference ( family-250 ) : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---A--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|1 : ATAGTTTTTGTG-----TT-TT-G-TTTTTT-T--------TATATCTTTTTCTTGTAAATATCTTTGATTTTAATGA------GA------GAGGGAGAGCAAGCGACGTAT------A---------TAATTA-TATT-AT---------------------TTTCTATAGCC--AT---TC----------T--------TA--------TTAAATTGAATTATAAATCATATGTG------------TGTTTTGTCCAATTTA-ATC----TCCCAAA-ACAGTTACTTT-CATTAACAATC-ATTG---A--TTAT--TATATG--------TGT-----AC--TATGTAATTCCCGTTACCAGTCATTTTTTCAATAACAATCCCGCAGTCATTA
gi|10 : agttaacgttttttaaaaattaaaggtaaacctgattactcgggttgtgcattgtgtaaactgtgctgcattctatttttatcaaagaagtagacaCAATTACCTGAAGACATGCGATCCATTTT-TTG-TGTGTCTTC-TTTC----A--A-ATTATAATGATTAATGACAAA-AAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccagatttgcgtggggccggattgtccat
gi|11 : attaTA-TTAATTTTAATATAGTTTTT----------------TTTCTG-T---ATATATATATCTTTTT---AAAAATATC----GTCTTGA-GA------GATAGAACGGAGGAGAG--AG--AT------------------------------TCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACATG------------T------------TAA-ATT----CCAAAAA-ATAGCTACTTTTCAATAA--GTC-ATTG---A--GTAT--TGTA----------TGC-----AC--TATGTAATTCCCGTTATGAGAAA-TATTTCAATAACAATCCTGCAGTAATTAA------TATGTGTGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCaatacttataactgatatcagagagagagagagagacgacagacattgtttatgattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgattatattaattaatttattattcaattgaattat
gi|13 : aTTTGTA-----TT-TTTG-TTTTTT-C---TTGTTTATACTTTTTT---AAAAGTATC----GTCTTGA-GA------GGTAGTATGAG------------ATGTAT------A---------TAATTA-TATGCAT---------------------TGTCTATGATT--A-----------------------------------TTAAATTGAATTATAAATTATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTACTTTTCCTTAACAGTC-ATTGACTA--TTAT--TGTA----------TGC-----AT--TATATAATTCCCGTT-----------TATCATTAACAATCCTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAT
gi|14 : ---AAAAGTATC----GTCTTGA-GA------GATATAACGAAGGAGAA--AG--ATGTAT------A---------TTATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------ATTAACTAATTA--------TTAAACTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTGCTTTTCATTAACAGTG-ATTG---A--TTAT--TGTA----------TGC-----AT--TATATTATTTCAGTT-----------TTTCAATAAAAATACTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------GTAATAA--CTTTCCAA--------TATCTTATTGGAAATACC
gi|15 : aAGAT--AG--ATGCAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------ATTAATT-AATTATAAATCATACGTG------------T------------TAA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACATTC-ATTG---A--TTAT--TGTA----------AGC-----TC--TATATAATTCCCGTTATGAGAAA-TATTTCAATAACAATCCCGCAGTAATTA--------ATGTGCATTTCAAATTAT-------CTAATAA--TTTTCCAA--------TATTTCATTACAAATAC
gi|16 : TGTAT------G---------TAATTA-TATTCAT---------------------TGTTAATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGTT-TTTG---A--TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAA-AATTTCAATAACAATCCCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|17 : AT---------------------TGTTAATGATT--AT--ATTAATTAATTAAT--------TA--------TTAAATTGAATTATAAATCGTAAGTA------------T------------TTC-ATTC---CCCCAAA-AT-GTTACTTTTCATTAACATTC-ATTG---A--TTAT--TATA----------TGC-----AC--TATATAACTCCCGTTAAGAGTAA-GTTTTCAATAACAATCCCCCTGTAATTAA------TAAGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAAAACC
gi|18 : TTTATGATT--AT--ATTA--------AT--------TAATTAATTATTAAATTGAATTATAAATCATAAGTA------------T------------TTCTATC----TCCCAAA-AT-GTTACTTTTCATTAACAATC-ATT---------------------------TGC-----AC--TATATAATTCCCGTTAAGAGTAA-GTTTTCAATAACAATCCCACTGGAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAa
gi|19 : AG--AT--ATGTAT------A---------TAATTA-CATTAAT---------------------TGTTTATGATTCTATTAATTA--------AT--------TA--------TTAAATTGAATTATAATTCATAAGTG------------T------------TTA-ATTCCCCCCCAAAA-A----TACTTTTTATTAACAATC-ATTG---A--TTATTATATA----------TGC-----ACTATATATAATTCCCGTTATGAGTAG-TTTTTCAATAACAATCCCGCAGTAATTA
gi|2 : ATTTA-TTAATTTTAATATAGTTTTTGTG-----TT----GATTTTTT-C---CTGTATTTATCTATTT---AAACGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATGA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TAAAAAAATATTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---G--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGTAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAACTAT-------CTAATTA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|21 : tCAGTTTCCTGAAGATATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-AGA--A-ATTGAAATGATTAATGACAAGCaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataacggggcaggatttacatggggccggatattccata
gi|23 : ccgtcttaGTTTCCTGATAATAGGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-G--ACATTGTAAttataaccgatgagagagagagagagagagagagatg
gi|24 : tactTTACCTGAAGACATGCAATCCATTTT-TTT-CTTGTCTTCTTTTC----A--A-ATTATAATGATTAATGACAAAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggggggaggg
gi|25 : atcgtaccggtattactaCAGTAACCTGAAGTCATGCGATCCATTTTATTT-CTTGTTTTC-TTTCA-A-A-----TTATAATGATTAATGACAAACAAActacttataact
gi|26 : atcatatttCAGTTATATGAAGACATGTGATCCATTGC-TTTATTTGTCTTT-TTTCA-A-ATAA-A----AATGATTAATGACAAACAAAtaatactaataaccgat
gi|27 : tcgtgttaCATTTTCCTTAAGATATACAATTTATTTT-TTT-CTTGTCTTC-TTTCATA-A--A-ATTGTAATGATTAATGACAAACtaatacttataaccgata
gi|28 : tcgtattaGAGTAA-GTTTTCAATAACAATCCCACTGTAATTAA------TATGTGCATTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCttataaccg
gi|3 : aaCAGTTTCCTGAAGACATGCAATCCATTTT-TTT-TTTGTCTTC-TTTAA-AGA--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTG-TTCATTTTAATATAGTTTTGGGGA----TT-TT-G-TTTTTT-C---TTGTATATATTTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGCGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATAAACAGTC-ATTG---A--TTTT--TGTA----------TGC-----AA--TATATAATTCCTGTTATGAGATA-TTTTTCAAAAACAATCCCACAGTAATTGA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATTCC
gi|30 : AGTTGATTAAAGACATGCGATCCATTAG-TT--CTTGTCTTC-TTTCA-A-A-----TTATAATGATTAATGACAAAC
gi|32 : atcctgttgtCATTTTTCTGAAGATATGTGATCTACTTT-TTT-CTTG--TTT-TTTCA-----------------ATTAATGACAAACg
gi|4 : ctttgttaGA-GA------GAGAGA--GAGG-AGAG--AG--A-GTCT----------------T--------TTCAT---------------------TTTCTATAGTC--AT---TC----------T--------TA--------TTAAATTTCATTATAAATCATAAGTGTGTTTTGTCCGAT------------TTA-ATC----CCCCAAA-ACAGTTAC-TTTCATTAACAATC-ATTG---A--TTAT--TATA----------TGTGA---AC--TATGTAATTCCCGTTACCAGTCA-TTTT---ATAACAATCCCACAGTAATTAttatnnnn
gi|5 : gagaataaggggggATATTACTTTA-T-AATTCAAATATAGTTTT--------------------------------ATATAT--TCTC---AAAAGTATC----GTCTTGA-GA------GATATAACGAGGGAGAG--AG--ATGTATATAACTA---------TAATCATTGTTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN--NNNN--------NN--------NN--------NNNNATTGAATTATAAATCATAAGTG------------T------------TTA-ATT----CCCAAAA-ATAGTTACTTTT-ATAAACAATC-AATG---A--TTAT--TATA----------TGC-----AC--AATATAATTCCCGTTATGAGTCA-T-TTTCAATAACAATCTCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTCCCAATATTTCATTATTTCATTAGAAATACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccggatttgcgtggggccggatttgcgtggggccagattgtccataac
gi|6 : gatatacagacaaacggacgggcgaacggacggacggccggccggcaagcagacaggtagacagTTACTTAATTTAAATGT-----TTGTG-----CT-TT----TTTAT-CAAATTGTTCATATCATTTT---AACATTATC----GTTTTGA-GAAATACTGATAGAAAGAGGGAGGG--ATC-ATGTAC------AATAAATTATTAATTT-TATTTAT---------------------TTTTAATGATT--AA--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCAT---TA------------G------------TTA-CTT----TTTAAAA-A---CTATCCCTCGTTGATTATCAAATG---AATTTTT--TATAAATCTTAAATTGTTTCTAAC--TACATAATTTCTGAAATGAGTGA-CATTCCAATAACAATCCCTCATTGACCAAAAGGCCTATGTCTATTTCAAATCATCCGTTTACTATTAAATATTTCC-----------ATTTCATTACAAATACa
gi|7 : ATTTA-TTAATTTTAATATAGTTTTTAAG-----TTGTT-G-TTTTTTTC---CTGTATATATATTTT----AAAGGTATC----GTCTCGA-GA------GATAGAACGAGAAAGAG--AG--ATGTAT------A---------TAACTA-TATCCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGCC-ATTG---G--TTAT--TGTA----------AGC-----AC--TATATATTTCCCGTTATGAGAAA-TATTTCAATAACAATCCCGCAGTAATTAA------TATGTGCCTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCa
gi|8 : tATTTA-TTAATTTTAATATAGTTTTTGTGATGTTTT-TT-G-TTTT-------CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGTGAGAG--A----TGTAT------A---------TGATTA-TATTCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----TCCAAAA-ATAGCTACTTTTCAATAACAGTC-ATTG---A--TTAG--TGTA----------AAC-----AC--TATATAATTCTCGTTATGAGAAA-TGTATCAATAACAATCCTGCAGTGATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAC
gi|9 : A-TTTATTTTAATATAGTTTTTGTG-----TT-AT-T-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTATTGA-GA------GATAGAACGAGTGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTAAGATT--AT--ATTA--------AT--------TA------------ATC-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAAAATAGCTACTTTTCAATAGCAGTC-ATTG---A--TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAA-TATTTCAAACACATTCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAATAGAAATAC
blockSeqs : T A A T AAATAA G C ATGTTTTTTG CAAAT . . . AATACT . C AATAAATTAT T GNNNNNNNNNNNNNNNNNNNN CT TA ATTAATTA TAACTAAT ATTAATTAT G TGTTTTGTCCGAT T CCCC A A ACT AT TA AATCTTAAAT TTCTA TA A TA AAGGCC CCGTTTA AT TATTTCAT
blockSeqs : T . . . AAGAA G . TTTTTG TCC . . . . . . ATAACTA . . . . . . AAAAAATAT G T . C . . . . . . GA . A TA . . . .
blockSeqs : A . . . AAGAC A . ATTTTG TA . . . . . . A . . . . . . T G T . . . . . . . . . . A AA . . . .
blockSeqs : A . . . ATAAA A . TTGTTG CT . . . . . . A . . . . . . T G T . . . . . . . . . . T GT . . . .
blockSeqs : A . . . AAGAA G . TTATT CC . . . . . . A . . . . . . A G T . . . . . . . . . . T GT . . . .
blockSeqs : T . . . AAA G . TTGA CT . . . . . . G . . . . . . T G T . . . . . . . . . . T TT . . . .
blockSeqs : T . . . AAA A . CTTT CC . . . . . . A . . . . . . T G T . . . . . . . . . . T TA . . . .
blockSeqs : G . . . AA . . C . . . . . . A . . . . . . T T T . . . . . . . . . . T GT . . . .
blockSeqs : T . . . A . . . . . . . . . A . . . . . . T G T . . . . . . . . . . A TT . . . .
blockSeqs : . . . . . . A . . . . . . N G T . . . . . . . . . . T TT . . . .
blockSeqs : . . . . A . . . . . . T . T . . . . . . . . . . T CA . . . .
blockSeqs : . . A . . . . . . . . T . . . . . . . . . . T TA . . . .
blockSeqs : . . . . . . . . . . . G . . . . . . . . . . A TG . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . A TA . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . A T
blockSeqs : . . . . . . T . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : AAGAA**** TTTTG******** CC**** *** **** ** ** T************************ ********** TN*
originalCons : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCA-A-A--A-ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---A--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAA-TNTTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
finalCons : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCAAGAA----ATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTGTTTTG--------TTTTTTCC----TGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTGT------------------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTG---A--TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAATN-TTTCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GCACATTGTAATAACAAGTATACGGGTTTTTTAATGTTTAAACAATTAAGTTAACGGTTTTTAAAAATTAAAGGTAAACTTGTTTAATTTTTTATTGTAGTGTTTTGTTTTCCCCTTTATATATATTATTTAATATTGAGGGAAAGACATAGTCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAGGGGCCGGATTTACATGGGGCCGA
Unaligned ( gi|22 ): CAGATTAGAATATATTATCATAAAATGTTTCATTGACAGATGAACGTACGGACGGACGGACGGACGGACAGGCATACAGACAGAGTTTTTCCTTTATGAAACTTAAAAAT
Unaligned ( gi|29 ): ATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATATAT
Unaligned ( gi|31 ): ACTGAAATATATGTGTTAACTATATCAGACAATCAGACGGACGGACGGATGGACGGACGGACGGGCAGACAGGCAGGC
Unaligned ( gi|33 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
Unaligned ( gi|34 ): ACATATGAGCACCTAGGACGGACAGACAGACGAAATAGCAGACAGACAGACTTTTTACCCTTA
Alignments
lowQualScore : 1111 3333333333333333333333333333333333 2222222222222 111111 1111111111111111 222222222222222222222 222222222 1111111111111111111111111 1111111111 11111
lowQualScore : 1 4 4 4 8888 0 1 4444444444444444444444444444444444 5 0 3333333333333 0 444444 0 666 7777 3 999999 33 66 5555555555555555 2 111111111111111111111 33 333 88888888 88888888 666666666 0 9 6666666666666666666666666 2 7777 2 0 2 777 33 0000000000 22222 33 2 4 2 777777 8888888 33 99999999
lowQualScore : . . . . .... . . .................................. . . ............. . ...... . ... .... . ...... .. .. ................ . ..................... .. ... ........ ........ ......... . . ......................... . .... . . . ... .. .......... ..... .. . . . ...... ....... .. ........
lowQualScore : 0 0 0 0 8888 6 4 0000000000000000000000000000000000 0 8 1111111111111 9 000000 7 444 7777 3 666666 99 88 2222222222222222 7 222222222222222222222 22 555 55555555 55555555 000000000 2 1 5555555555555555555555555 4 4444 4 2 4 444 22 3333333333 44444 22 6 7 2 777777 7777777 77 77777777
consensus : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCAAG-AAATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTGA---TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAATNTT-TCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
Reference ( family-250 ) : CAGTTNCCTGAAGACATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCAAG-AAATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTA-TTAATTTTAATATAGTTTTTGTG-----TT-TT-G-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTGA---TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGNAATNTT-TCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|1 : ATAGTTTTTGTG-----TT-TT-G-TTTTTT-T--------TATATCTTTTTCTTGTAAATATCTTTGATTTTAATGA------GA------GAGGGAGAGCAAGCGACGTAT------A---------TAATTA-TATT-AT---------------------TTTCTATAGCC--AT---TC----------T--------TA--------TTAAATTGAATTATAAATCATATGTG------------TGTTTTGTCCAATTTA-ATC----TCCCAAA-ACAGTTACTTT-CATTAACAATC-ATTGA---TTAT--TATA----------TGTGT---AC--TATGTAATTCCCGTTACCAGTCATTTTTTCAATAACAATCCCGCAGTCATTA
gi|10 : agttaacgttttttaaaaattaaaggtaaacctgattactcgggttgtgcattgtgtaaactgtgctgcattctatttttatcaaagaagtagacaCAATTACCTGAAGACATGCGATCCATTTT-TTG-TGTGTCTTC-TTTC----AAATTATAATGATTAATGACAAA-AAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccagatttgcgtggggccggattgtccat
gi|11 : attaTA-TTAATTTTAATATAGTTTTT----------------TTTCTG-T---ATATATATATCTTTTT---AAAAATATC----GTCTTGA-GA------GATAGAACGGAGGAGAG--AG--AT------------------------------TCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACATG------------T------------TAA-ATT----CCAAAAA-ATAGCTACTTTTCAATAA--GTC-ATTGA---GTAT--TGTA----------TGC-----AC--TATGTAATTCCCGTTATGAGAAATATT-TCAATAACAATCCTGCAGTAATTAA------TATGTGTGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCaatacttataactgatatcagagagagagagagagacgacagacattgtttatgattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtgattatattaattaatttattattcaattgaattat
gi|13 : aTTTGTA-----TT-TTTG-TTTTTT-C---TTGTTTATACTTTTTT---AAAAGTATC----GTCTTGA-GA------GGTAGTATGAG------------ATGTAT------A---------TAATTA-TATGCAT---------------------TGTCTATGATT--AT-----------------------------------TAAATTGAATTATAAATTATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTACTTTTCCTTAACAGTC-ATTGACTATTAT--TGTA----------TGC-----AT--TATATAATTCCCGTT----------TA-TCATTAACAATCCTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAT
gi|14 : ---AAAAGTATC----GTCTTGA-GA------GATATAACGAAGGAGAA--AG--ATGTAT------A---------TTATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------ATTAACTAATTA--------TTAAACTGAATTATAAATCATACGTG------------T------------TTA-ATT----CCTAAAA-ATAGTTGCTTTTCATTAACAGTG-ATTGA---TTAT--TGTA----------TGC-----AT--TATATTATTTCAGTT----------TT-TCAATAAAAATACTGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------GTAATAA--CTTTCCAA--------TATCTTATTGGAAATACC
gi|15 : aAGAT--AG--ATGCAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------ATTAATT-AATTATAAATCATACGTG------------T------------TAA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACATTC-ATTGA---TTAT--TGTA----------AGC-----TC--TATATAATTCCCGTTATGAGAAATATT-TCAATAACAATCCCGCAGTAATTA--------ATGTGCATTTCAAATTAT-------CTAATAA--TTTTCCAA--------TATTTCATTACAAATAC
gi|16 : TGTAT------G---------TAATTA-TATTCAT---------------------TGTTAATGATT--AT--ATTA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGTT-TTTGA---TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAAAATT-TCAATAACAATCCCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|17 : AT---------------------TGTTAATGATT--AT--ATTAATTAATTAAT--------TA--------TTAAATTGAATTATAAATCGTAAGTA------------T------------TTC-ATTC---CCCCAAA-AT-GTTACTTTTCATTAACATTC-ATTGA---TTAT--TATA----------TGC-----AC--TATATAACTCCCGTTAAGAGTAAGTTT-TCAATAACAATCCCCCTGTAATTAA------TAAGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAAAACC
gi|18 : TTTATGATT--AT--ATTA--------AT--------TAATTAATTATTAAATTGAATTATAAATCATAAGTA------------T------------TTCTATC----TCCCAAA-AT-GTTACTTTTCATTAACAATC-ATT-------------------------TGC-----AC--TATATAATTCCCGTTAAGAGTAAGTTT-TCAATAACAATCCCACTGGAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAa
gi|19 : AG--AT--ATGTAT------A---------TAATTA-CATTAAT---------------------TGTTTATGATTCTATTAATTA--------AT--------TA--------TTAAATTGAATTATAATTCATAAGTG------------T------------TTA-ATTCCCCCCCAAAA-A----TACTTTTTATTAACAATC-ATTGA---TTATTATATA----------TGC-----ACTATATATAATTCCCGTTATGAGTAGTTTT-TCAATAACAATCCCGCAGTAATTA
gi|2 : ATTTA-TTAATTTTAATATAGTTTTTGTG-----TT----GATTTTTT-C---CTGTATTTATCTATTT---AAACGTATC----GTCTTGA-GA------GATAGAACGAGGGAGAG--AG--ATGTAT------A---------TAATGA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TAAAAAAATATTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATTAACAGTC-ATTGG---TTAT--TGTA----------TGC-----AC--TATATAATTCCCGTTATGAGTAATATT-TCAATAACAATCCCGCAGTAATTAA------TATGTGCGTTTCAAACTAT-------CTAATTA--CTTTCCAA--------TATTTCATTAGAAATACC
gi|21 : tCAGTTTCCTGAAGATATGCGATCCATTTT-TTT-CTTGTCTTC-TTTCAAG-AAATTGAAATGATTAATGACAAGCaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataacggggcaggatttacatggggccggatattccata
gi|23 : ccgtcttaGTTTCCTGATAATAGGCGATCCATTTT-TTT-CTTGTCTTC-TTTCAAG-ACATTGTAAttataaccgatgagagagagagagagagagagagatg
gi|24 : tactTTACCTGAAGACATGCAATCCATTTT-TTT-CTTGTCTTCTTTTC----AAATTATAATGATTAATGACAAAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggggggaggg
gi|25 : atcgtaccggtattactaCAGTAACCTGAAGTCATGCGATCCATTTTATTT-CTTGTTTTC-TTTCAA----ATTATAATGATTAATGACAAACAAActacttataact
gi|26 : atcatatttCAGTTATATGAAGACATGTGATCCATTGC-TTTATTTGTCTTT-TTTCAAATAAA----AATGATTAATGACAAACAAAtaatactaataaccgat
gi|27 : tcgtgttaCATTTTCCTTAAGATATACAATTTATTTT-TTT-CTTGTCTTC-TTTCATA-AAATTGTAATGATTAATGACAAACtaatacttataaccgata
gi|28 : tcgtattaGAGTAAGTTT-TCAATAACAATCCCACTGTAATTAA------TATGTGCATTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCttataaccg
gi|3 : aaCAGTTTCCTGAAGACATGCAATCCATTTT-TTT-TTTGTCTTC-TTTAAAG-AAATTGTAATGATTAATGACAAACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATATATATATATTAATTTG-TTCATTTTAATATAGTTTTGGGGA----TT-TT-G-TTTTTT-C---TTGTATATATTTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGGGCGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTATGATT--AT--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCATACATG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCATAAACAGTC-ATTGA---TTTT--TGTA----------TGC-----AA--TATATAATTCCTGTTATGAGATATTTT-TCAAAAACAATCCCACAGTAATTGA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATTCC
gi|30 : AGTTGATTAAAGACATGCGATCCATTAG-TT--CTTGTCTTC-TTTCAA----ATTATAATGATTAATGACAAAC
gi|32 : atcctgttgtCATTTTTCTGAAGATATGTGATCTACTTT-TTT-CTTG--TTT-TTTCA--------------ATTAATGACAAACg
gi|4 : ctttgttaGA-GA------GAGAGA--GAGG-AGAG--AG--A-GTCT----------------T--------TTCAT---------------------TTTCTATAGTC--AT---TC----------T--------TA--------TTAAATTTCATTATAAATCATAAGTGTGTTTTGTCCGAT------------TTA-ATC----CCCCAAA-ACAGTTAC-TTTCATTAACAATC-ATTGA---TTAT--TATA----------TGTGA---AC--TATGTAATTCCCGTTACCAGTCATTTT----ATAACAATCCCACAGTAATTAttatnnnn
gi|5 : gagaataaggggggATATTACTTTA-T-AATTCAAATATAGTTTT--------------------------------ATATAT--TCTC---AAAAGTATC----GTCTTGA-GA------GATATAACGAGGGAGAG--AG--ATGTATATAACTA---------TAATCATTGTTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN--NNNN--------NN--------NN--------NNNNATTGAATTATAAATCATAAGTG------------T------------TTA-ATT----CCCAAAA-ATAGTTACTTTT-ATAAACAATC-AATGA---TTAT--TATA----------TGC-----AC--AATATAATTCCCGTTATGAGTCAT-TT-TCAATAACAATCTCGCAGTAATTAA------TATGTACGTTTCAAATTAT-------CTAATAA--CTTCCCAATATTTCATTATTTCATTAGAAATACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtagcggggccggatttgcgtggggccggatttgcgtggggccagattgtccataac
gi|6 : gatatacagacaaacggacgggcgaacggacggacggccggccggcaagcagacaggtagacagTTACTTAATTTAAATGT-----TTGTG-----CT-TT----TTTAT-CAAATTGTTCATATCATTTT---AACATTATC----GTTTTGA-GAAATACTGATAGAAAGAGGGAGGG--ATC-ATGTAC------AATAAATTATTAATTT-TATTTAT---------------------TTTTAATGATT--AA--ATTA--------AT--------TA--------TTAAATTGAATTATAAATCAT---TA------------G------------TTA-CTT----TTTAAAA-A---CTATCCCTCGTTGATTATCAAATGAAT-TTTT--TATAAATCTTAAATTGTTTCTAAC--TACATAATTTCTGAAATGAGTGACATT-CCAATAACAATCCCTCATTGACCAAAAGGCCTATGTCTATTTCAAATCATCCGTTTACTATTAAATATTTCC-----------ATTTCATTACAAATACa
gi|7 : ATTTA-TTAATTTTAATATAGTTTTTAAG-----TTGTT-G-TTTTTTTC---CTGTATATATATTTT----AAAGGTATC----GTCTCGA-GA------GATAGAACGAGAAAGAG--AG--ATGTAT------A---------TAACTA-TATCCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAA-ATAGCTACTTTTCAATAACAGCC-ATTGG---TTAT--TGTA----------AGC-----AC--TATATATTTCCCGTTATGAGAAATATT-TCAATAACAATCCCGCAGTAATTAA------TATGTGCCTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATACCa
gi|8 : tATTTA-TTAATTTTAATATAGTTTTTGTGATGTTTT-TT-G-TTTT-------CTGTATATATCTTTTT---AAAAGTATC----GTCTTGA-GA------GATAGAACGAGTGAGAG--A----TGTAT------A---------TGATTA-TATTCAT---------------------TGTTTATGATT--AT--ATCA--------AT--------TA------------ATT-AATTATAAATCATACGTG------------T------------TTA-ATT----TCCAAAA-ATAGCTACTTTTCAATAACAGTC-ATTGA---TTAG--TGTA----------AAC-----AC--TATATAATTCTCGTTATGAGAAATGTA-TCAATAACAATCCTGCAGTGATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCATTAGAAATAC
gi|9 : A-TTTATTTTAATATAGTTTTTGTG-----TT-AT-T-TTTTTT-C---CTGTATATATCTTTTT---AAAAGTATC----GTATTGA-GA------GATAGAACGAGTGAGAG--AG--ATGTAT------A---------TAATTA-TATTCAT---------------------TGTTTAAGATT--AT--ATTA--------AT--------TA------------ATC-AATTATAAATCATACGTG------------T------------TTA-ATT----CCCAAAAAATAGCTACTTTTCAATAGCAGTC-ATTGA---TTAT--TGTA----------AGC-----AC--TATATAATTCCCGTTATGAGAAATATT-TCAAACACATTCCCGCAGTAATTAA------TATGTGCGTTTCAAATTAT-------CTAATAA--CTTTCCAA--------TATTTCAATAGAAATAC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GCACATTGTAATAACAAGTATACGGGTTTTTTAATGTTTAAACAATTAAGTTAACGGTTTTTAAAAATTAAAGGTAAACTTGTTTAATTTTTTATTGTAGTGTTTTGTTTTCCCCTTTATATATATTATTTAATATTGAGGGAAAGACATAGTCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAGGGGCCGGATTTACATGGGGCCGA
Unaligned ( gi|22 ): CAGATTAGAATATATTATCATAAAATGTTTCATTGACAGATGAACGTACGGACGGACGGACGGACGGACAGGCATACAGACAGAGTTTTTCCTTTATGAAACTTAAAAAT
Unaligned ( gi|29 ): ATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATATAT
Unaligned ( gi|31 ): ACTGAAATATATGTGTTAACTATATCAGACAATCAGACGGACGGACGGATGGACGGACGGACGGGCAGACAGGCAGGC
Unaligned ( gi|33 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
Unaligned ( gi|34 ): ACATATGAGCACCTAGGACGGACAGACAGACGAAATAGCAGACAGACAGACTTTTTACCCTTA