lowQualScore : 77777777 11111111 2 2222222 1111 8888888888888888888888888888888888888888 55555555555 1 22222222 11111 555555555555555555 1 22
lowQualScore : 5 6 22222222 33333333 2 3 1 1 7 2 1 9 0 0 8888888 33 0 0000 8888888888888888888888888888888888888888 44444444444 9 0 0 55555555 11111 4 000000000000000000 2 1 0 6 0 22
lowQualScore : . . ........ ........ . . . . . . . . . . ....... .. . .... ........................................ ........... . . . ........ ..... . .................. . . . . . ..
lowQualScore : 4 6 88888888 22222222 5 0 0 3 3 2 4 0 4 3 2222222 99 1 6666 6666666666666666666666666666666666666666 44444444444 4 2 0 00000000 11111 0 111111111111111111 5 0 1 2 5 55
consensus : TGATGATCTAAAACTAAATTAAAATCCGTGTTGAATATAAAAAAATATATACG--AAGA--CAACTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATATA----TA----------TA--------T--------A----------TGCCTCGTAACTCAACT----TA----CTATATGC-TATN---T---CCTT-----CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCG--AATATAGCGATT-A-GTGGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACACAGTAGGAACATAGACGTATGAGCGGGGNTGGGGGGG
Reference ( gi|2 ) : TGATGATCTAAAAATAAATTAAAATCCATGTTGAAAAT-------TATATATA--AAGA--CAACTGGTTAGTTATGAGGTCAAAATTTTAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATAAGTTACTATATAGATACTAATAAACATATAACCCATAGCGTGCTTTCATATA----TA----------TA--------T--------A----------TGCCTCGTAACTCAACT----TG----CTATATGC-TATA---T---CCTT-----CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCGGAAATATAGCGATT-ATGTGGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGCGGGGG-GGGGGGG
gi|1 : TGATGATCTAAAAATAAATTAAAATCCATGTTGAAAAT-------TATATATA--AAAAAACAACTGGTTAGTTATGAGGTCAAAATTTCAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCACAGCGTGCTTTCATATA----TA----------TA--------TGCATATATA----------TGCCTCGTAACTCAATT----T-------ATATGC-TATT---T---CATT-----CTGATACCGACTTGTGGATG-TTTGTTACATACGACAACGTAAGCGGAAATATAGCGATT-ATGCGGTGCATCAATTGTGGGGTCCTGTATAGAGCCCGCTTTCCAAAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
gi|4 : TGATGATCTAAAAATAAATTAAAATCCATGTTGAAAAT-----------TATA--------------------TATAAAGACAA---------TCTGGTTCCTGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATATA----TA----------TA--------TGCATATATA----------TGCCTCGTAACTCAACT----T-------ATATGC-TATT---T---CCTT-----CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCGGAAATACAGTGATT-ATGTGGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGCGGGGT-GG
gi|3 : tTGATGATCTAAAACTAAATTAAAATCCGTGTTGAATATAAAAAAATATATACG--AAGA--CAACTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAAT----TACT-TATAGATACTAGTAAACATATCACCCATAGCGTGCTTTCATATATATATATGCATATAATTA--------T--------A----------TGCCTTGTAACTCAACT-----------TATATAC-TATT---T---CCTT-----CTGAGACCGACCTGTGGATG-TTTGGAACATACGACAACGTAAGCG------TAG--------GTGTTGCAGCAATTGTGGGGTCCTATATAGACTCCGCCTT
gi|7 : tTGATGATCTAAAACTAAATTAAAATCCGTGTTGAATATAAAAAAATATATACG--AAGA--CAACTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAAttatgagagtcccgcaacaaggatttaatatag
gi|5 : gaaaagtaaaacacacgaaatcatgaaaaaaaaatcctcaaattcacctgtgaactcgaaactttccaagcagaaattaacacgcaaactcgcgtcactgaatccaagccccagaggaccttgtcattctcctttttggacaatgcacagtccctctacggattttattTGATGATCTAAAACTGAATTAAAATCCATGTTGAATATAAAAA--TATATATACGAAAA--CAATTGGTAAGTTATGAGGTTGAAATTTCAAACCCTGTTTCGTGGTTTTGCCGAACGCCCCATAA
gi|6 : caaaaattaaaacacacgaaatcatgaaaaagaatcctcaaatttactcgtgaactcgaaaccttccaaacagaaattaacacgcaaactcacgtcactctatccaagccccagaagaccttgtcattctccttttttggacaatgcacagtccctctgtggattttattA--CAACTA-TTATTTAGGA---CAAAATTTCAAACCTAGTCTCGGGTTTTTGCCGAACACTCCATAATTAGGTACTATATAGATAT------ACACATAATCCATATAGTGGTTATATATA----TACGCATA----TA--------T--------A----------TGCCTCGTAACTCAACTGATATA----CTAT-TG--TATA---T---CTTTTCTTTCTGAGACCGACTTGTGGATGGTTTAGTACATACGACAACGTAGGCGTTAATATAGCGATT-AGATAGTGCAGTAATTGCGGGGTCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAAC
gi|8 : AATTTCAAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATA-TAAT-----TATA---------GTGCTTTTA-ATA----TA----------TA--------T--------ACGCATATAATTGCCTCGTAACTCAACT----TAAATACTAT-TGTATATA---TTTTCCTT-----CTGAGACCAACTTGTGGATG-TTTGGTACATACGACAACGTAAGCG------------TT-G-GTGTTGCAGCAATTGTGGGATCCTATATAGACCCCGCCTTggac
gi|9 : AAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATAT------ACATATAACCCATATAGTGCTTTTATATA----TA----------TACGCTTATAT--------A----------TGCCTCGTTACTCAACT-----------TATATAC-TATCTTTT---CCTT-----CTGAGACCGACTTGTGGATG-TTTGGTACAAACGACAACGTAAGCG------TAG--------GTGTTGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatatag
gi|15 : CGAACGCCCTGTAATTAGTTACTATATAGATACTAGTAAATATATAACCCATAGCGTGCTTTC----A----TA----------TA--------T--------A----------TGCCTCGTAACTCAttaagaacgccccgcaacaaggattttata
gi|11 : GTTACTATATAGATAT------ACATATAACTGATAAAGTGCTTTCATATA----TA----------T------------------------------GCTTCGTAACTCAACT----TATATACTAT-TGCATATA---TTTTCTTT-----CTGAGATCGACTTGTGGATG-TTTGGTACACAGGACAACATAAGC---AAT-------------------------TGTGGGGTCCTGTATATACCCCGCCTT
gi|12 : gACTCAA-T----TG----TT-TAT-C-TTT----T---CCTA-----CTCGGACCATCTTGTGAATG-TTTGGTTCATACGACAACATAAGC-TAAATATAGCAATTGATG-GGTGCAGCGCATGTTGGGCACTATGTAGAAGTCGCttaagagcccccataagaaggattt
gi|13 : tATT---T---CCTT-----CTGAGACCGACCTGTGGATG-TTTGGTACATACGACAACGT-----------TAGCG--T-AGGTGTTGCAGCAATTGGTGGGTCATATATAGACCCCGCCTTatcattacagtgtctcacaagaggagtttcatagac
gi|14 : GAGACCGACTTGTGGATA-TTTAGTACATATGACAACGTAGGCGTTAATATAGCGATT-AGATAGTGCAGTAATTGCGGGGGCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAACttatgagagtctcgcaacaaggattttata
gi|17 : TGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTT
gi|16 : tTGCAGCAATTGTTGGGTCCTTTATAGACCCCGCCTTttaag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AACAAAAGTCGGAAAACACGAAATTCACGAAAATATCCTGAAATTCATTCGTGAACTCGAACACCCTCCCAAAAATAAATTCACATGCAAACTCGCGTCACTCTATCAAAGCCCCAGAAGACCTAGTCATTCCCCTTTTTAAACAATGTACAGTCCCTCTGGGGATTTTGATTGATGGTCTGAAATAAATTAAAATACTTGTTGATGTATAT
Alignments
lowQualScore : 1111111 1111111 5555555555555555555555555555555555555 4444444444444444 111 555555555555555555 1
lowQualScore : 7 2 5 1 2222222 5 3 0 0 0 4444444 11 4444444444444444444444444444444444444 4444444444444444 1 0 555 777 1 4 4 3 3 666666666666666666 3 1 0 4
lowQualScore : . . . . ....... . . . . . ....... .. ..................................... ................ . . ... ... . . . . . .................. . . . .
lowQualScore : 9 7 7 9 0000000 7 0 7 4 1 2222222 22 4444444444444444444444444444444444444 2222222222222222 9 9 666 000 0 0 0 6 6 555555555555555555 6 4 4 0
consensus : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TA----CTA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G--AATATAGCGATTA-G-T-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
Reference ( family-2488 ) : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TA----CTA---TATGC---TA---TNT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G--AATATAGCGATTA-G-T-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACACAGTAGGAACATAGACGTATGAGCGGGGNTGGGGGGG
gi|1 : TGATGATCTAAAAATAAATTAAAATCCATGTTGA-AAATTA-----TATATAAAAAAACAA-CTGGTTAGTTATGAGGTCAAAATTTCAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCACAGCGTGCTTTCATATATATATGCATATA--------TA--------------TGCCTCGTAACTCAATT-----------TA---TATGC---TA---TTT-CATT-CTGATACCGACTTGTGGAT-GTTTGTTACATACGACAACGTAAGC-GGAAATATAGCGATTATG-C-GGTGCATCAATTGTGGGGTCCTGTATAGAGCCCGCTTTCCAAAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
gi|10 : TGATGGTCTGAAA-TAAATTAAAATACTTGTTGATGTATA
gi|11 : aacaaaagtcggaaaacacgaaattcacgaaaatatcctgaaattcattcgtgaactcgaacaccctcccaaaaataaattcacatgcaaactcgcgtcactctatcaaagccccagaagacctagtcattcccctttttaaacaatgtacagtccctctggggattttgatGTTACTATATAGATAT------ACATATAACTGATAAAGTGCTTTCATAT--------ATAT--------------------------GCTTCGTAACTCAACT----TATATACTA---T-TGCATATA---TTT-TCTTTCTGAGATCGACTTGTGGAT-GTTTGGTACACAGGACAACATA------------------------------AGCAATTGTGGGGTCCTGTATATACCCCGCCTTt
gi|12 : gACTCAA-T----TG----TT----TAT-C---T----TTT-CCTA-CTCGGACCATCTTGTGAAT-GTTTGGTTCATACGACAACATAAGCTA--AATATAGCAATTG-A-TGGGTGCAGCGCATGTTGGGCACTATGTAGAttaagagcccccataagaaggattt
gi|13 : tA---TTT-CCTT-CTGAGACCGACCTGTGGAT-GTTTGGTACATACGACAACGTTAGC-G------TAG-------G-T-GTTGCAGCAATTGGTGGGTCATATATAGACCCCGCCTTagtcgcatcattacagtgtctcacaagaggagtttcatagac
gi|14 : GAGACCGACTTGTGGAT-ATTTAGTACATATGACAACGTAGGC-GTTAATATAGCGATTA-GAT-AGTGCAGTAATTGCGGGGGCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAACttatgagagtctcgcaacaaggattttata
gi|15 : CGAACGCCCTGTAATTAGTTACTATATAGATACTAGTAAATATATAACCCATAGCGTGCTTTC------------ATATA--------TA--------------TGCCTCGTAACTCA
gi|16 : TGCAGCAATTGTTGGGTCCTTTATAGACCCCGCCTT
gi|17 : TGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatat
gi|2 : tTGATGATCTAAAAATAAATTAAAATCCATGTTGA-AAAT-------TATATATAAAGACAA-CTGGTTAGTTATGAGGTCAAAATTTTAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATAAGTTACTATATAGATACTAATAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TG----CTA---TATGC---TA---TAT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-GGAAATATAGCGATTATG-T-GGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGCGGGGGGGGGGGGttaag
gi|3 : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAATTA----CT-TATAGATACTAGTAAACATATCACCCATAGCGTGCTTTCATAT--------ATATA--------TATGCATATAATTATATGCCTTGTAACTCAACT----TA----------TATAC---TA---TTT-CCTT-CTGAGACCGACCTGTGGAT-GTTTGGAACATACGACAACGTAAGC-G------TAG-------G-T-GTTGCAGCAATTGTGGGGTCCTATATAGACTCCGCCTT
gi|4 : tTGATGATCTAAAAATAAATTAAAATCCATGTTG--------AAAATTATATATAAAGACAATCTGGTT-----------------------CCTGG-------GTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATATATATATGCATATA--------TA--------------TGCCTCGTAACTCAACT-----------TA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-GGAAATACAGTGATTATG-T-GGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGCGGGG-TGGttatgagagtcccgcaacaaggatttaatatag
gi|5 : tTGATGATCTAAAACTGAATTAAAATCCATGTTGA-ATATAAAAATATATATACGAAAACAA-TTGGTAAGTTATGAGGTTGAAATTTCAAACCCTGTTTCGTGGTTTTGCCGAACGCCCCATAA
gi|6 : caaaaattaaaacacacgaaatcatgaaaaagaatcctcaaatttactcgtgaactcgaaaccttccaaacagaaattaacacgcaaactcacgtcactctatccaagccccagaagaccttgtcattctccttttttggacaatgcacagtccctctgtggattttattACAA-CTA-TTATTTAGGA---CAAAATTTCAAACCTAGTCTCGGGTTTTTGCCGAACACTCCATAATTAGGTACTATATAGATAT------ACACATAATCCATATAGTGGTTATATATATACGC--ATATA--------TA--------------TGCCTCGTAACTCAACTGATATA----CTATTGTATAT---CT---TTT-CTTT-CTGAGACCGACTTGTGGATGGTTTAGTACATACGACAACGTAGGC-GTTAATATAGCGATTA-GAT-AGTGCAGTAATTGCGGGGTCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAAC
gi|7 : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAAggac
gi|8 : gaaaagtaaaacacacgaaatcatgaaaaaaaaatcctcaaattcacctgtgaactcgaaactttccaagcagaaattaacacgcaaactcgcgtcactgaatccaagccccagaggaccttgtcattctcctttttggacaatgcacagtccctctacggattttattAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATA-TAAT-----TATA---------GTGCTTTTA-AT--------ATATA--------TACGCATATAAT----TGCCTCGTAACTCAACT----TAAATACTA---T-TGTATATA---TTTTCCTT-CTGAGACCAACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G------------TTG-G-T-GTTGCAGCAATTGTGGGATCCTATATAGACCCCGCCTT
gi|9 : AAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATAT------ACATATAACCCATATAGTGCTTTTATAT--------ATATACGCTTATATA--------------TGCCTCGTTACTCAACT-----------TA---TATAC---TATCTTTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACAAACGACAACGTAAGC-G------TAG-------G-T-GTTGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatatag
Alignments
lowQualScore : 1111111 1111111 5555555555555555555555555555555555555 4444444444444444 111 555555555555555555
lowQualScore : 6 2 5 1 2222222 5 3 0 0 0 4444444 11 4444444444444444444444444444444444444 4444444444444444 1 0 555 777 4 4 3 3 666666666666666666 3 1 0 6
lowQualScore : . . . . ....... . . . . . ....... .. ..................................... ................ . . ... ... . . . . .................. . . . .
lowQualScore : 6 7 7 9 0000000 7 0 7 4 1 2222222 22 4444444444444444444444444444444444444 2222222222222222 9 9 666 000 0 0 6 6 555555555555555555 6 4 4 7
consensus : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TA----CTA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G--AATATAGCGATTA-G-T-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
Reference ( family-2488 ) : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TA----CTA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G--AATATAGCGATTA-G-T-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
gi|1 : TGATGATCTAAAAATAAATTAAAATCCATGTTGA-AAATTA-----TATATAAAAAAACAA-CTGGTTAGTTATGAGGTCAAAATTTCAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCACAGCGTGCTTTCATATATATATGCATATA--------TA--------------TGCCTCGTAACTCAATT-----------TA---TATGC---TA---TTT-CATT-CTGATACCGACTTGTGGAT-GTTTGTTACATACGACAACGTAAGC-GGAAATATAGCGATTATG-C-GGTGCATCAATTGTGGGGTCCTGTATAGAGCCCGCTTTCCAAAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
gi|10 : TGATGGTCTGAAA-TAAATTAAAATACTTGTTGATGTATA
gi|11 : aacaaaagtcggaaaacacgaaattcacgaaaatatcctgaaattcattcgtgaactcgaacaccctcccaaaaataaattcacatgcaaactcgcgtcactctatcaaagccccagaagacctagtcattcccctttttaaacaatgtacagtccctctggggattttgatGTTACTATATAGATAT------ACATATAACTGATAAAGTGCTTTCATAT--------ATAT--------------------------GCTTCGTAACTCAACT----TATATACTA---T-TGCATATA---TTT-TCTTTCTGAGATCGACTTGTGGAT-GTTTGGTACACAGGACAACATA------------------------------AGCAATTGTGGGGTCCTGTATATACCCCGCCTTt
gi|12 : gACTCAA-T----TG----TT----TAT-C---T----TTT-CCTA-CTCGGACCATCTTGTGAAT-GTTTGGTTCATACGACAACATAAGCTA--AATATAGCAATTG-A-TGGGTGCAGCGCATGTTGGGCACTATGTAGAttaagagcccccataagaaggattt
gi|13 : tA---TTT-CCTT-CTGAGACCGACCTGTGGAT-GTTTGGTACATACGACAACGTTAGC-G------TAG-------G-T-GTTGCAGCAATTGGTGGGTCATATATAGACCCCGCCTTagtcgcatcattacagtgtctcacaagaggagtttcatagac
gi|14 : GAGACCGACTTGTGGAT-ATTTAGTACATATGACAACGTAGGC-GTTAATATAGCGATTA-GAT-AGTGCAGTAATTGCGGGGGCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAACttatgagagtctcgcaacaaggattttata
gi|15 : CGAACGCCCTGTAATTAGTTACTATATAGATACTAGTAAATATATAACCCATAGCGTGCTTTC------------ATATA--------TA--------------TGCCTCGTAACTCA
gi|16 : TGCAGCAATTGTTGGGTCCTTTATAGACCCCGCCTT
gi|17 : TGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatat
gi|2 : tTGATGATCTAAAAATAAATTAAAATCCATGTTGA-AAAT-------TATATATAAAGACAA-CTGGTTAGTTATGAGGTCAAAATTTTAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATAAGTTACTATATAGATACTAATAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TG----CTA---TATGC---TA---TAT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-GGAAATATAGCGATTATG-T-GGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGCGGGGGGGGGGGGttaag
gi|3 : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAATTA----CT-TATAGATACTAGTAAACATATCACCCATAGCGTGCTTTCATAT--------ATATA--------TATGCATATAATTATATGCCTTGTAACTCAACT----TA----------TATAC---TA---TTT-CCTT-CTGAGACCGACCTGTGGAT-GTTTGGAACATACGACAACGTAAGC-G------TAG-------G-T-GTTGCAGCAATTGTGGGGTCCTATATAGACTCCGCCTT
gi|4 : tTGATGATCTAAAAATAAATTAAAATCCATGTTG--------AAAATTATATATAAAGACAATCTGGTT-----------------------CCTGG-------GTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATATATATATGCATATA--------TA--------------TGCCTCGTAACTCAACT-----------TA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-GGAAATACAGTGATTATG-T-GGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGC-GGGGTGGttatgagagtcccgcaacaaggatttaatatag
gi|5 : tTGATGATCTAAAACTGAATTAAAATCCATGTTGA-ATATAAAAATATATATACGAAAACAA-TTGGTAAGTTATGAGGTTGAAATTTCAAACCCTGTTTCGTGGTTTTGCCGAACGCCCCATAA
gi|6 : caaaaattaaaacacacgaaatcatgaaaaagaatcctcaaatttactcgtgaactcgaaaccttccaaacagaaattaacacgcaaactcacgtcactctatccaagccccagaagaccttgtcattctccttttttggacaatgcacagtccctctgtggattttattACAA-CTA-TTATTTAGGA---CAAAATTTCAAACCTAGTCTCGGGTTTTTGCCGAACACTCCATAATTAGGTACTATATAGATAT------ACACATAATCCATATAGTGGTTATATATATACGC--ATATA--------TA--------------TGCCTCGTAACTCAACTGATATA----CTATTGTATAT---CT---TTT-CTTT-CTGAGACCGACTTGTGGATGGTTTAGTACATACGACAACGTAGGC-GTTAATATAGCGATTA-GAT-AGTGCAGTAATTGCGGGGTCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAAC
gi|7 : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAAggac
gi|8 : gaaaagtaaaacacacgaaatcatgaaaaaaaaatcctcaaattcacctgtgaactcgaaactttccaagcagaaattaacacgcaaactcgcgtcactgaatccaagccccagaggaccttgtcattctcctttttggacaatgcacagtccctctacggattttattAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATA-TAAT-----TATA---------GTGCTTTTA-AT--------ATATA--------TACGCATATAAT----TGCCTCGTAACTCAACT----TAAATACTA---T-TGTATATA---TTTTCCTT-CTGAGACCAACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G------------TTG-G-T-GTTGCAGCAATTGTGGGATCCTATATAGACCCCGCCTT
gi|9 : AAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATAT------ACATATAACCCATATAGTGCTTTTATAT--------ATATACGCTTATATA--------------TGCCTCGTTACTCAACT-----------TA---TATAC---TATCTTTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACAAACGACAACGTAAGC-G------TAG-------G-T-GTTGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatatag
blockSeqs : A T T T AAAAAAA T T CTAGTAA AA ATATATATGCATATAATTATA GATATACTATTG A ATA TCT T T G T TTAATATAGCGATTAGA G G G
blockSeqs : C A . A AAAAATA . G CTAATAA GC ATATATACGCATATAAT TATATACTA A ATA . . . . . GAAATATAGCGATTATG . T .
blockSeqs : A G . T AAAAAAA . T CTAGTAA GC ATATATGCATATATA TAAATACTA A . . . . . . GAAATACAGTGATTATG . G
blockSeqs : C A . T AAAAT . G CTAGTAA GC ATATACGCTTATATA TGCTA A . . . . . . TTAATATAGCGATTAGA . G
blockSeqs : C A . T . . G TAAT GC ATACGCATATATA TGTT A . . . . . . AATATAGCAATTGA . T
blockSeqs : . G . . . . T TA ATATATA TA A . . . . . . TAGG . G
blockSeqs : T TA ATATATA TA . . . . . . . TAGG . G
blockSeqs : T . ATAT TA . . . . . . . TTGG . T
blockSeqs : . . . . . TAGG . T
blockSeqs : . . . . .
blockSeqCons : AAAAAAA TAATAAGCGATTAGG***
originalCons : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TA----CTA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-G--AATATAGCGATTA-G-T-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
finalCons : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATATA--------TA--------------TGCCTCGTAACTCAACT----TA----CTA---TATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGAT-GTTTGGTACATACGACAACGTAAGC-GTAATAAGCGATTAGG---T-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
Alignments
lowQualScore : 1111111 1111111 5555555555555555555555555555555555555555555 44444444444 111 77777777777777
lowQualScore : 6 2 5 1 2222222 5 3 0 0 0 4444444 11 4444444444444444444444444444444444444444444 33333333333 9999 0 555 777 4 4 3 88888888888888 2 3 1 0 6 7
lowQualScore : . . . . ....... . . . . . ....... .. ........................................... ........... .... . ... ... . . . .............. . . . . . .
lowQualScore : 6 7 7 9 0000000 7 0 7 4 1 2222222 22 4444444444444444444444444444444444444444444 77777777777 7777 9 666 000 0 0 6 11111111111111 1 6 4 4 7 3
consensus : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATA------TA--------TA--------------TGCCTCGTAACTCAACT----TA----CTAT---ATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCG--AA-TATAGCGATTAGGT-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
Reference ( family-2488 ) : TGATGATCTAAAANTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTANGAGGTCAAAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATAT--------ATA------TA--------TA--------------TGCCTCGTAACTCAACT----TA----CTAT---ATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCGT-AA-TA-AGCGATTAGGT-GGTGCAGCAATTGTGGGGTCCTGTATAGACCCCGCCTTCCCGAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
gi|1 : TGATGATCTAAAAATAAATTAAAATCCATGTTGA-AAATTA-----TATATAAAAAAACAA-CTGGTTAGTTATGAGGTCAAAATTTCAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCACAGCGTGCTTTCATATATATATGCATA------TA--------TA--------------TGCCTCGTAACTCAATT-----------TAT---ATGC---TA---TTT-CATT-CTGATACCGACTTGTGGATG-TTTGTTACATACGACAACGTAAGCGGAAA-TATAGCGATTATGC-GGTGCATCAATTGTGGGGTCCTGTATAGAGCCCGCTTTCCAAAAGACATAGTAGGAACATAGACGTATGAGCGGGGGTGGGGGGG
gi|10 : TGATGGTCTGAAA-TAAATTAAAATACTTGTTGATGTATA
gi|11 : aacaaaagtcggaaaacacgaaattcacgaaaatatcctgaaattcattcgtgaactcgaacaccctcccaaaaataaattcacatgcaaactcgcgtcactctatcaaagccccagaagacctagtcattcccctttttaaacaatgtacagtccctctggggattttgatGTTACTATATAGATAT------ACATATAACTGATAAAGTGCTTTCATAT--------ATA------T--------------------------GCTTCGTAACTCAACT----TATATACTAT----TGCATATA---TTT-TCTTTCTGAGATCGACTTGTGGATG-TTTGGTACACAGGACAACATA-----------------------------AGCAATTGTGGGGTCCTGTATATACCCCGCCTTt
gi|12 : gACTCAA-T----TG----TT-T---AT-C---T----TTT-CCTA-CTCGGACCATCTTGTGAATG-TTTGGTTCATACGACAACATAAGCTA-AA-TATAGCAATT-GATGGGTGCAGCGCATGTTGGGCACTATGTAGAttaagagcccccataagaaggattt
gi|13 : tA---TTT-CCTT-CTGAGACCGACCTGTGGATG-TTTGGTACATACGACAACGTTAGCG--------------TAGGT-GTTGCAGCAATTGGTGGGTCATATATAGACCCCGCCTTagtcgcatcattacagtgtctcacaagaggagtttcatagac
gi|14 : GAGACCGACTTGTGGATA-TTTAGTACATATGACAACGTAGGCGTTAA-TATAGCGATTAGAT-AGTGCAGTAATTGCGGGGGCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAACttatgagagtctcgcaacaaggattttata
gi|15 : CGAACGCCCTGTAATTAGTTACTATATAGATACTAGTAAATATATAACCCATAGCGTGCTTTC------------ATA------TA--------TA--------------TGCCTCGTAACTCA
gi|16 : TGCAGCAATTGTTGGGTCCTTTATAGACCCCGCCTT
gi|17 : TGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatat
gi|2 : tTGATGATCTAAAAATAAATTAAAATCCATGTTGA-AAAT-------TATATATAAAGACAA-CTGGTTAGTTATGAGGTCAAAATTTTAAATCTGGTTCCTGGGTTTTGTCGAACGCCCCATAATAAGTTACTATATAGATACTAATAAACATATAACCCATAGCGTGCTTTCATAT--------ATA------TA--------TA--------------TGCCTCGTAACTCAACT----TG----CTAT---ATGC---TA---TAT-CCTT-CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCGG-AAATATAGCGATTATGT-GGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGCGGGGG-GGGGGGGttaag
gi|3 : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAATTA----CT-TATAGATACTAGTAAACATATCACCCATAGCGTGCTTTCATAT--------ATA------TA--------TATGCATATAATTATATGCCTTGTAACTCAACT----TA-------T---ATAC---TA---TTT-CCTT-CTGAGACCGACCTGTGGATG-TTTGGAACATACGACAACGTAAGCG--------------TAGGT-GTTGCAGCAATTGTGGGGTCCTATATAGACTCCGCCTT
gi|4 : tTGATGATCTAAAAATAAATTAAAATCCATGTTG--------AAAATTATATATAAAGACAATCTGGTT-----------------------CCTGG-------GTTTTGCCGAACGCCCCATAATTAGTTACTATATAGATACTAGTAAACATATAACCCATAGCGTGCTTTCATATATATATGCATA------TA--------TA--------------TGCCTCGTAACTCAACT-----------TAT---ATGC---TA---TTT-CCTT-CTGAGACCGACTTGTGGATG-TTTGGTACATACGACAACGTAAGCGGAAA-TACAGTGATTATGT-GGTGCATCAATTGTGGGGTCCTGTATAGAACCCGCTTTCCCAAAGACATAGTAGGAACATAGACGTATGAGC-GGGGTGGttatgagagtcccgcaacaaggatttaatatag
gi|5 : tTGATGATCTAAAACTGAATTAAAATCCATGTTGA-ATATAAAAATATATATACGAAAACAA-TTGGTAAGTTATGAGGTTGAAATTTCAAACCCTGTTTCGTGGTTTTGCCGAACGCCCCATAA
gi|6 : caaaaattaaaacacacgaaatcatgaaaaagaatcctcaaatttactcgtgaactcgaaaccttccaaacagaaattaacacgcaaactcacgtcactctatccaagccccagaagaccttgtcattctccttttttggacaatgcacagtccctctgtggattttattACAA-CTA-TTATTTAGGA---CAAAATTTCAAACCTAGTCTCGGGTTTTTGCCGAACACTCCATAATTAGGTACTATATAGATAT------ACACATAATCCATATAGTGGTTATATAT--------ATACGCATATA--------TA--------------TGCCTCGTAACTCAACTGATATA----CTATTGTATAT---CT---TTT-CTTT-CTGAGACCGACTTGTGGATGGTTTAGTACATACGACAACGTAGGCGTTAA-TATAGCGATTAGAT-AGTGCAGTAATTGCGGGGTCCTGTATAGAACCTGCTTTCCCGAAGACACAGTAGAAAC
gi|7 : TGATGATCTAAAACTAAATTAAAATCCGTGTTGA-ATATAAAAAAATATATACGAAGACAA-CTGGTTAGTTAGGAGGTTAAAAGTTCAAGCCTTGTTTCGGTGTTTTGTCGAACGCCCCATAAggac
gi|8 : gaaaagtaaaacacacgaaatcatgaaaaaaaaatcctcaaattcacctgtgaactcgaaactttccaagcagaaattaacacgcaaactcgcgtcactgaatccaagccccagaggaccttgtcattctcctttttggacaatgcacagtccctctacggattttattAATTTCAAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATA-TAAT-----TATA---------GTGCTTTTA-AT--------ATA------TA--------TACGCATATAAT----TGCCTCGTAACTCAACT----TAAATACTAT----TGTATATA---TTTTCCTT-CTGAGACCAACTTGTGGATG-TTTGGTACATACGACAACGTAAGCGT-------------T-GGT-GTTGCAGCAATTGTGGGATCCTATATAGACCCCGCCTT
gi|9 : AAACCTGGTTCCGGGGTTTTGCCGAACACCCCATACTTAGTTACTATATAGATAT------ACATATAACCCATATAGTGCTTTTATAT--------ATA------TACGCTTATATA--------------TGCCTCGTTACTCAACT-----------TAT---ATAC---TATCTTTT-CCTT-CTGAGACCGACTTGTGGATG-TTTGGTACAAACGACAACGTAAGCG--------------TAGGT-GTTGCAGCAATTGTGGGGTCCTATATAGACCCCGCCTTttatgagcgccccgcaacaaggattttatatag