lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 1111 7777777 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 111 1111 111 1111 1
lowQualScore : 7 9999 4444444 22 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 2 2 9999 6 888 555 7777 4 4 222 333 5555 3 1 4
lowQualScore : . .... ....... .. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . .... . ... ... .... . . ... ... .... . . .
lowQualScore : 0 0000 0000000 00 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 8 1 4444 7 888 222 8888 0 1 222 000 7777 6 4 1
consensus : ACTATTTGATATCTTTTTCTGATCCACAAGAGGTAATATTTGTAACCTGTAACATTTATACCAANTATT-GACTGNCGTATTCA-TTCCCACACGAGTNAAATCNCGAGAT-CGAAGTGTGACNGCTACCAGAAATNTGACTGGTCGGAAAACNGANNAGCGGGAAGCTCNCATATACTTAAG--ATATGGTA----AGCGTTATGCAGAGATAAAGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGA-----AATGCTCCTT-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATNAATACCATNNTCGGNGATACGGTAAACCACATTCTGTGGGC--ATACNCGGT-ACATTTACNACNTCAATACGCAATANCCAGGNACGCCGCCNATGCTATCATTTCGGCCNNANTTCTCGNCCANTTCGACGTGTNCAACGCTGAAACTT--CA-AC---TT-TTCTACGTGTTTAC-TGAANAAATCGTAC-AT---AGAAT-TTTCGAAA-TG--AAAAATACGGCGNCATTGAATANAATGTGC------ACAT-CCA--ATCTATCAAGTGATAAGCTCGACATTCAATCGCGANTTTCANCATTTCA--ACANGTGTTTG-TTTC-----GTTTCACGTGT---NTCCGGA-CATTTACACAT----C--AGTTAN-TTG-TTA----G----------T---ATA--CA-ATGCTA-------TAGTC---GTAA-AAAACAGCTGATAA-T--TGNGTTTCAATCNA-C--CTTGTTGATNA-AAAT-ATTCCCAATT-TTCGAAAAN-NTCTTATA--ATTTT-AGAGCAATATCCGGTGTACGTTGTAC
Reference ( gi|1 ) : ACTATTTGTTAACCCTTTG-GAAGTATAAAAAATAATAT-----A--T-------TTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAAC--AA--CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACAT---CTT-AGTTATATCATATTATATTCTCATGCAG----AAGG---GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAATTATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGT---ACAGT---T-ATAT-CTGT---T--ATACACGGT-ACAT--ACAATTTCAATAC-----ACCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGTACAC---TCGCTCTGTGTGTCTAATTTAATAAATCGCACCATTT-AGAATGTTCCCAACCTGCCAAAAATAAAACGATACTGAATAAAATATGTCA-AGGACAT-TTA--ATTTGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCA--ACAGGTGCTTG-TTTT-----ATAACACGTGT---ATCCGAA-CATTTACACAT----A--AGTTAC-TTA-TTA----G----------T---AT---CA-AT-----------TAGTC---ATGG-AAAACAGTTTATAA-TAGTATGTTTCGATCAA-C--CTTGATGATCA-AAATCATTTTTGATT-TTCGAAAAA-ATCTTATA--ATTTT-AGTGCAATATCCGGTGTACGTTGTAC
gi|4 : ACTATTTGATATCTTTTTCTGATCCACAAAAGGTAATAT-----A--TGTAACATTTATATTAAATATT----TGC--TATTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAA--ATGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCAT---
gi|2 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggcaATAAGAGGTAATATTTGTAACCT-------TTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGA--------GTGTGACCGCTACC--AAATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATATACTTAAG--ATATGGTA----AGCGTTATGCAGAGATAAAGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGA-----AATGCTCCTT-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGA---ACGGTAAAT-ATAT--TGTGGGTCAATACTCAGT-ACA
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcattttttgctctcaatttccggcccTCAATATTATAGTAAGTGATACAAT---CCACATTCTAT---C--ATTTGTGACCACATTTACAACT---ATAC-----AACTAGGGA-GCCGCCGATGCTATC-TTTCGG-CAAAATTCTCGGCCATTTCGACATGTTCAATGCTAAA---------AC---T--TTCCACGTGTTTACATGAAAATATCGCATGATAA-AGAAT-TTTTGAAAATGCTAAAACTACGGCGACATTGAATGAAATGTGC------ACAT-CC---ACCTATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACACAGGT-TTTG-TTCT-----AT-TCAC--GT---AGCCGAAGCATTGCCACAT----C--AATTAG-TTA-TTC----GTTACGCGAATT---AT---GA-ATGCAA-------CAGTC---GTTA-CGCACAACTGATAA-T--TGAGTTTCGATCTA-T--CTTGTTAATAA-AAA--AAGTCCAATTGTTCG------ATCTC-TA-----------GCGATATCCAGTGTACGCTGT
gi|5 : --ATACCAAGT-ACAT--ATTATATCAA-ACGCAATACCCA-GTACACCATCCATATT--TATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAATTTGGCAAACTTTTTTTTCTTTGTGTC--------TAAATCGTA-CATTTCAGAAT-TTTCGAAATTG-GAAAAAGACAACGTTATTGAATAAAATGTGC------ACATACTA--TTCCATCAAG----AA--------------------TTTCACCATTTTA--ACACGTGTTTGATTCT-----GT-CCACTTGT---TTCATGC-CATTTACGCAT----C--CGTTAG-TTG-TTA----G----------TCAAATA--TA-ATGTTATAACGTGTAGTC---GTAC-AAACCAG----TAGCTAGTAGGGTTAAATCTT-C--CTT--------------ATTCCCAATT-TTCGAAAAT-GTCTTATATCATTTT-AGAGCAGTATCTGGTGTACGTTATACtcca
gi|7 : caCAACGCTGAAACTTTTCACAC---TTGGCCTATTTGTTTATCTGAACAAATCGTAC--------AAT-------AC------AAAATATG-CGTCATTAAATACGGTTTGT----GCATAT-TTCCCATTTATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCA--ATGAATGTTCG-GTTC-----ATTTAACGTGG---TTCGGAG-CATTAACACATCAATA--AGCAACACGA-ATA----G----------T---GT------ATCCTG-------TAGTC---ATAATAAAGCAACTGATA--------GTTTCAACCAA-C--CATGTCGATCA-AAATAATTCCACATT-TTCGAATAT-ATAAT-TA--ATTTT-AGc
gi|8 : tATAACGCGATATTGTGTATAATGTG-CATATGCCAC-CCA---TTTATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCA--TCA-----TTG-TTTTGAGCCATTTCACGTGTTGAA---GAG-CATTTACACAT----C--AGTTAT-TTACTTA----G----------C---ACATACA-AT-----------T
gi|11 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgGAATTTCATTATTTCA--ACATGTGCTTT-GTTC-----ATTCCACTTGT---GGTTGGA-TATTTTCACAT----C--AGTTAG-TTG-TTA----G----------T---tttttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|10 : agacaatgttaatactaaaatattaagaacatatatcttgggA--ACAGGT--TTA-CTTC-----GTATCAAGTA----GTTCGGA---TTTACATATTTG-ATTAGTTAT-TCG-TTACACGA----------T---GTG--CATATGG---------TGGTCGCAATAA-ACAACAG---ATAA-C--TGTGGTTCAATCTA-C--CTTGTTGATAATAAAT-ATTCCAAATT-TCC-AAAAG-TTCTTATC--ATTTT-AGAGCAATATCCGGTGTACATTGTACtacataaatctt
gi|14 : ttttttttaacaaGTTTCAACCAATC--CTTGTTGATTT-AAACTATTCTTGATT-TTCAAAAAA-ATC-------GTTTC-AGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : actggTCAA-CTGCTTGTTGATCA-AATTCATTTCCAATT-TCCGAAAAATCTCTCATC--ATTTTAAGT-CCATATCCGGTGTAC-TTTTAC
gi|17 : tCAA-G--CTTATTGGTAA-ATATAATTCCCAATT-TCCGAAAAT-GCCTTATA--ATTTT-AGGGCAA-----AGTGTGCGTTGTAca
gi|18 : TGATTA-AATTTATTCCCAATT-TTGGAAAAT-GTCCTATATCACTTT-AGATCAATATCCAGTATATGTTGTAtc
gi|8 : tATTTTT--TT-TT--AAAAA-ATCC-ATA---TTTT-AGAGCAATATCCGGTGTACGTTGTACa
gi|19 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaATT-TTT--AAAA-CTCTTATT--TCTTT-AGTGCAATATCCGGTGTACGTTGCAc
gi|9 : aaacacatttaacaaTTTTATC--ATTTT-AGAGCAGTATTCGATGTACCGTGTACtca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TGTGAATTGTGATAAATAAAACTGACTGGTCGGAAAACAGATTCACATTTACATAAAACATGGTAATTTAATGCAGGGTGAATAGAAAACTGTTTCGCACATTTTAAAGCAAACTTAAAGCTTTTAAATCTTTTTTTTTTACTCTGTACAATTAAATCAGCTCTGGGTCAATACCCTTAACATATTTTATTAAATGCAATACTCAGTACACCTTAATTTTCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAATTTGGAACACTTTTTTTTGTGTCTTAATTTGAGTCAATACCAAGTACATAT
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Unaligned ( gi|13 ): CCATGCGTGGCTTATGCACAAACCGGAAACTATTTGCTTTCCATTTCAGGTCGATGAAAAGTAAATATTTATAACATTTATACCAAAT
Unaligned ( gi|16 ): CACAGTTCATCATCTCTGAGTGACCACAGTTACAATATCTAGTACGCTGTTGATGCTGTTTTTTGTCCAATTTATCAGCCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 111 55555555 444444444 1 33333 444444444 111111 1 111 3333333 333333 22 11 222 6666666666666666666666 11 1 2222 666666666666666666666666666666666666666666666666666666666666666666 11 11 2222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 22222 333333333 11 111111 7777777777777777777777777777777777777777777777777777777 111 111 111111 11111 1 1111
lowQualScore : 7 7 33 4 1 0 0 3 000 99999999 1 000000000 3 3 0 1 1 00000 2 1 4 444444444 0 0 1 555555 4 1 7 3 999 3333333 222222 22 4 11 333 4444444444444444444444 55 5 3333 4 1 7 0 22 44 555555555555555555555555555555555555555555555555555555555555555555 1 3 66 44 22 1 7777777 2 444 1 33 1 2 2 2 1 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 00000 222222222 6 1 6666 777 44 1 1 66 77 8 0 6 1 77777 00 5 444444 1 5 6666666666666666666666666666666666666666666666666666666 111 111 999999 4 77777 3 8 1 4 66 4 3 4 3 2 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. . . . . . ... ........ . ......... . . . . . ..... . . . ......... . . . ...... . . . . ... ....... ...... .. . .. ... ...................... .. . .... . . . . .. .. .................................................................. . . .. .. .. . ....... . ... . .. . . . . . . .................................................................................................................. . . .. ..... ......... . . .... ... .. . . .. .. . . . . ..... .. . ...... . . ....................................................... ... ... ...... . ..... . . . . .. . . . . . . . . . . ... . .... .
lowQualScore : 0 7 00 7 0 7 7 3 000 22222222 0 000000000 3 7 7 0 0 00000 5 0 2 000000000 2 2 0 888888 2 0 7 3 000 7777777 777777 77 0 00 333 7777777777777777777777 77 0 5555 0 0 3 7 00 33 999999999999999999999999999999999999999999999999999999999999999999 0 2 00 55 55 0 8888888 0 555 0 00 0 0 0 0 0 4 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 00 00000 444444444 4 0 8888 888 66 0 0 00 55 4 9 2 2 88888 22 0 444444 0 0 9999999999999999999999999999999999999999999999999999999 777 888 222222 0 44444 0 4 0 4 11 0 8 0 4 0 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCNATTTCCGGTCCATAAAAGGTAA-TATTTGTAAC-T---ACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTACCAGAAA-CTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT--ATGCAGAG--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGACAAATCTACGCATTTACCANTCAATACTATACTNAG---TACGGTAAACCATATTCTGTGG-C--A-TACNC--GGT-ACATTTACAATNTCAATACGCAATACCCAGGTACACCGTCGATGTT-TCGTTTCAGCCCTANTTCTCAGCCANTTCAATGTATGCAACGCTGAAACTTGG--CG-----A-----CTT-T-TCTNTGTGT-TTA--C-TGAACA-AAT-C---GCAC---AT---A--GAATTTTCGAAA--T--GC-AAAAAT---------ACG-----GCGATATTGAATAAAAT--GTGC-----ACAT--CCA---ATTTATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACAC-GTG-TTTGNTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAA-NAAACA------GCNGATAAT--TGNGTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGATATCTTTTTCTGATCCACAAGAGGTAA-TATTTGTAACCTGTAACATTTATACCAANTATT-GACTGNCGTATTCA-TTCCCACACGAGTNAAATCNCGAGAT-CGAAGTGTGACNGCTACCAGAAATNTGACTGGTCGGAAAACNGANNAGCGGGAAGCTCNCATAT-ACTTAAG--ATATGGTAAGCGTT--ATGCAGAGATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATNAATACCATNNTCGGNGATACGGTAAACCACATTCTGTGGGC--A-TACNC--GGT-ACATTTACNACNTCAATACGCAATANCCAGGNACGCCGCCNATGCTATCATTTCGGCCNNANTTCTCGNCCANTTCGACGTGTNCAACGCTGAAACTT----CA-----A-----CTT-T-TCTACGTGT-TTA--C-TGAANA-AAT-C---GTAC---AT---A--GAATTTTCGAAA--T--G--AAAAAT---------ACG-----GCGNCATTGAATANAAT--GTGC-----ACAT--CCA---ATCTATCAAGTGATAAGCTCGACATTCAATCGCGANTTTCANCATTTCAACAN-GTG-TTTGTTTCGTTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TANTTG-T-----T----------AG--T---ATAC----------AATGC---TA-------TAGT---CGTAA-AAAACA------GCTGATAAT--TGNGTTTCAATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ATATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACAA----CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC--ATGCAGA------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAG---TACAGT----TATAT-CTGT---T--A-TACAC--GGT-ACAT--ACAATTTCAATAC-----ACCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAA--T----CGTGTACA-----CTCGC-TCTGTGTGT-CTAA-T-TTAATA-AAT-C---GCACC--ATTT-A--GAATGTTCCCAACCT--GCCAAAAAT---------AAA-----ACGATACTGAATAAAAT--ATGTCAAGGACAT--TTA---ATTTGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACAG-GTG-CTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGG-AAAACA------GTTTATAATAGTATGTTTCGATCAA-C--CTTGATGA-TCA-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : actatttgttaaccctttggaagtataaaaaataatAACAG-GT---TTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAA-TAAACA------ACAGATAAC--TGTGGTTCAATCTA-C--CTTGTTGA-TAATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttttttaacaaGAATTTCATTATTTCAACAT-GTGCTTTGTT-CATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGGTCGATGAAAAGTAAATATTTATAAC-------ATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaaAC--TGGGTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGA-TCA-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|17 : tCAA-G--CTTATTGG-TAA-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTAca
gi|18 : TTGA-TTA-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGGCCCATAAGAGGTAA-TATTTGTAACCT-------TTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCA--AATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT--ATGCAGAGATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGA---ACGGTAAA-TATAT--TGTGGGTCAA-TACTC--AGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGTGATAC---AATCCACATTCTAT---C--A-TTTGT--GACCACATTTACAACT---ATAC-----AACTAGGGA-GCCGCCGATGCTATC-TTTCGGC-AAAATTCTCGGCCATTTCGACATGTTCAATGCTAAAACTT-----------------------TCCACGTGT-TTA--CATGAAAA-TAT-C---GCATG--AT---AAAGAATTTTTGAAAA-T--GCTAAAACT---------ACG-----GCGACATTGAATGAAAT--GTGC-----ACAT--CCA----CCTATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACAC-AGG-TTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTA-CGCACA------ACTGATAAT--TGAGTTTCGATCTA-T--CTTGTTAA-TAA-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGATCCACAAAAGGTAA-TAT-----A--TGTAACATTTATATTAAATATT----TGC--TATTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAA--TGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca--A-TACCA--AGT-ACAT--ATTATATCAA-ACGCAATACCCAG-TACACCATCCATATT--TATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAATTTGG--CA-----AACTTTTTT-T-TCTTTGTGT-CT----------A-AAT-C---GTAC---ATTTCA--GAATTTTCGAAA--TTGG--AAAAAG---------ACA-----ACGTTATTGAATAAAAT--GTGC-----ACATA-CTA---TTCCATCAA------------------------GAATTTCACCATTTTAACAC-GTG-TTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTAC-AAACCA------GTAGCTAGT--AGGG-TTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGATAAATA----AAA-CTGACTGGTCGGAAAACAGAT-----------TCACATTT-ACATAAA--ACATGGTAA---TTTAATGCAGGGTGAATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTAc
gi|6 : tgtTAAATCA-GCTCTG-GGTC--AATACCCTTAAC-ATATTT----TATTAA-ATGCAATACTCAG-TACACC-TTAAT--TTTCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAATTTGGAAC------A-----CTT-T-TTTTTGTGTCTTAATT-TGAGTC-AATACCAAGTAC---AT---A--ctctgtacaattaaatcagctctgggtcaatacccttaacatattttattaaatgcaatactcagtacaccttaattttcatttcagccctaataagcagccagtttaatgtatgcattactgaaatttggaacacttttttttgtgtcttaatttgagtcaataccaagtacatat
gi|7 : tgtgaattgtgataaataaaactgactggtcggaaaacagattcacatttacataaaacatggtaatttaatgcagggtgaatagaaaactgtttcgcacattttaaagcaaacttaaagcttttaaatcttttttttttactctgtacaatCAACGCTGAAACTTTT--CAC----A-----CTT-GGCCTATTTGT-TTAT-C-TGAACA-AAT-C---GTAC---A------------------A--T--A--CAAAAT---------ATG------CGTCATTAAATACGGTTTGTGC-----ATATTTCCC---ATTTATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATGA-ATG-TTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCA------ACTGATA-------GTTTCAACCAA-C--CATGTCGA-TCA-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGt
gi|8 : tA--C-TGAACACAAT-T---ACACGAAAA---A--GAATTT----GA--T--G--AACAACTATGGGTTGACGATAACGCGATATTGTGTATAAT--GTGC-----ATATG-CCACCCATTTATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCATTGT--TTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AAT
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACttttttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttATCGTTTAAAAGT-CTG-TTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTAC-TAAACAGTACATGTAGACAG----GAG-----ACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Unaligned ( gi|16 ): CACAGTTCATCATCTCTGAGTGACCACAGTTACAATATCTAGTACGCTGTTGATGCTGTTTTTTGTCCAATTTATCAGCCA
Alignments
lowQualScore : 111 1 5555555555 1 222 1 33333 2222 111111 1 11 333333 55555555555555 11 222 5555555555555555555555 11 2222222222222222 1 11 888888888888888888888888888888888888888888888888888888888888 111 1 2222 7777777777777777777 2222 99999999999999999999999999999999999999 111 11 22222 222222222 11111 11 111111 7777777777777777777777777777777777777777777777777777777 111 22222222 1 1111
lowQualScore : 0 1 44 99 777 55 0 5555555555 3 555 3 1 3 00000 2 0 1 3333 2 0 0 777777 1 3 88 555555 99999999999999 1 0 11 333 9999999999999999999999 33 8888888888888888 2 1 22 333 1 222222222222222222222222222222222222222222222222222222222222 444 2 0 0 6 6666 33 1 0 1 0 8 3333333333333333333 1 3333 3 8 44444444444444444444444444444444444444 5 111 1 1 11 00000 666666666 8 6 1 55 555 44 1 1 77777 1 1 77777 00 5 444444 5 1111111111111111111111111111111111111111111111111111111 111 22 6 1 00000000 3 8 1 4 66 4 3 4 3 2 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. .. ... .. . .......... . ... . . . ..... . . . .... . . . ...... . . .. ...... .............. . . .. ... ...................... .. ................ . . .. ... . ............................................................ ... . . . . .... .. . . . . . ................... . .... . . ...................................... . ... . . .. ..... ......... . . . .. ... .. . . ..... . . ..... .. . ...... . ....................................................... ... .. . . ........ . . . . .. . . . . . . . . . . ... . .... .
lowQualScore : 2 0 55 00 555 00 0 8888888888 3 777 3 0 7 00000 5 2 2 2222 5 2 2 888888 0 3 33 777777 00000000000000 0 7 00 333 3333333333333333333333 00 0000000000000000 0 0 55 888 0 666666666666666666666666666666666666666666666666666666666666 555 5 5 2 5 2222 55 0 2 0 2 0 6666666666666666666 0 0000 2 0 44444444444444444444444444444444444444 6 000 4 0 00 00000 222222222 0 4 0 22 888 66 0 0 44444 0 2 88888 22 0 444444 0 2222222222222222222222222222222222222222222222222222222 777 55 7 0 77777777 0 4 0 4 11 0 8 0 4 0 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGT-AATATTTGTAAC---ATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTACCA-AAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--GA--A-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGTG-C-ATACNCGGT-ACAT-TTACAATTTCAATAC--AATACCCAGGTACACCGTCGATGTT-TCATTTCAGCCCTANTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGN--CA-A-----CTT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACG--ATTT-A--GAATTTT-CGAA-----A--TG---C-AAAAATACGGCGATATTGAATAAAAT--GTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---AC--TGGGTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGCTNTCNATTTCCGG---TCCATAAAAGGT-AATATTTGTAACTACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTACCAGAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--GA--A-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGACAAATCTACGCATTTACCANTCAATACTATACTNAGTACGGTA-AA-CCATATTCTGTGGC-ATACNCGGT-ACAT-TTACAATNTCAATACGCAATACCCAGGTACACCGTCGATGTT-TCGTTTCAGCCCTANTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGG--CG-A-----CTT-T-TCTNTGTGTTTA-C-TGAACA-AATCGCAC---AT---A--GAATTTT-CGAA-----A--TG---C-AAAAATACGGCGATATTGAATAAAAT--GTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGNTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---AT--TGNGTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ACTATTTGTTAACCCTTT--GGAAGT--ATAAAAAAT-AATAT----------ATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACA---ACTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC-ATGCAGA--------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGTACAGT------TATAT-CTGT--T-ATACACGGT-ACAT---ACAATTTCAATAC-----ACCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGT--AC-A-----CTCGC-TCTGTGTGTCTAAT-TTAATA-AATCGCACC--ATTT-A--GAATGTT-CCCA-----ACCTG---CCAAAAATAAAACGATACTGAATAAAAT--ATGTCAAGGACAT--TTA---ATT-TGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACA---G-GTGCTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGGAAAA-CAGTTTATA---ATAGTATGTTTCGATCAA-C--CTTGATGA-TCA-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : TTTTAACAAAAC-AGGTTTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAATAAA-CAACAGATA---AC--TGTGGTTCAATCTA-C--CTTGTTGA-TAATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttGAATTTCATTATTTCAACA---T-GTGCTTTGTTCATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGG---TCGATGAAAAGTAAATATTTATA---ACATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaa---AC--TGGGTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGA-TCA-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|17 : tCAA-G--CTTATTGG-TAA-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTAca
gi|18 : TTGA-TTA-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGG---CCCATAAGAGGT-AATATTTGTAACC---TTTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCA-AATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT-ATGCAGA--GATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGAACGGTA-AA--TATATTGTGGGTCAATACTCAGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGT--GATACAATCCACATTCTAT--C-ATTTGTGACCACAT-TTACAACT---ATAC--AA---CTAGGGA-GCCGCCGATGCTATC-TTTCGGCAA-AATTCTCGGCCATTTCGACATGTTCAATGCTAAAA-CTT-------------------TCCACGTGTTTA-CATGAAAA-TATCGCATG--AT---AAAGAATTTT-TGAA-----AA-TG---CTAAAACTACGGCGACATTGAATGAAAT--GTGC-----ACAT--CCA----CC-TATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACA---C-AGGTTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTACGCA-CAACTGATA---AT--TGAGTTTCGATCTA-T--CTTGTTAA-TAA-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGA---TCCACAAAAGGT-AATATATGTAAC---ATTTATATTAAATATT-TGCTA-----TTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAA-TGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca-ATACCAAGT-ACATATTA---TATCAA-ACGCAATACCCAG-TACACCATCCATATT-T-ATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAA-TTTGG--CA-AACTTTTTT-T-TCTTTGTGTCT---------A-AATCGTAC---ATTTCA--GAATTTT-CGAA-----AT-TG---G-AAAAAGACAACGTTATTGAATAAAAT--GTGC-----ACAT--ACT---ATTCCATCAA------------------------GAATTTCACCATTTTAACA---C-GTGTTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTACAAAC-CAGTAGCTA---GT--AGGG-TTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGATAAATA----AAACTGACTGGTCGGAAAACAGA-----------TTCACATTT-ACATAAA--ACATGGTAA-T-TTAATGCAGGGTGA--ATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTA-C--------TCTGTACAATTA--AATCA--GCT---CTGGGT----------CAATACCCT-TAAC-ATAT---------T-TTA----TTAAATGC--AATACTCA-GTACACC-TTAAT-TT-TCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAA-TTTGGAAC--A-----CTT-T-TTTTTGTGTCTc
gi|7 : tgtCAACGCTGAAA-CTTTT--CACA-----CTT-GGCCTATTTGTTTATC-TGAACA-AATCGTAC---A------------------------A--TA---C-AAAA-TATG-CGTCATTAAATACGGTTTGTGC-----ATATTTCCC---ATT-TATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATG---A-ATGTTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCAACTGATA----------GTTTCAACCAA-C--CATGTCGA-TCA-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGtaatttgagtcaataccaagtacatat
gi|8 : tA-C-TGAACACAATTACACGAAAA---A--GAATTTGATGAACAACTA--TGGGTT-GACGATAACGCGATATTGTGTATAAT--GTGC-----ATATG-CCACCCATT-TATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCA---TTGT-TTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AATTT---T
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACtttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttTGTTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTACTAAA-CAGTACATGTAGAC--AGGA----GACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Unaligned ( gi|16 ): CACAGTTCATCATCTCTGAGTGACCACAGTTACAATATCTAGTACGCTGTTGATGCTGTTTTTTGTCCAATTTATCAGCCA
Alignments
lowQualScore : 111 1 1 222 1 33333 111111 1 11 333333 55555555555555 11 222 5555555555555555555555 11 222222222222222 1 11 666666666666 333333 111111 22222222222 11 3333 55555555555555555 2222 11 666666666666666 22222 222222222 11111 11 111111 7777777777777777777777777777777777777777777777777777777 111 22222222222 1 1111
lowQualScore : 0 1 11 99 777 55 0 9 0 3 555 3 1 3 00000 2 55 2 66 0 0 777777 1 3 88 555555 99999999999999 1 0 11 333 9999999999999999999999 33 555555555555555 2 22 333 1 000000000000 7 111111 888888 33333333333 8 777 55 6 3 5555 6 1 1 0 8 88888888888888888 1 3333 3 8 1 44 1 88 1 222222222222222 1 1 1 1 00000 666666666 8 6 1 55 555 44 1 1 55555 5 0 1 77777 00 5 444444 5 1111111111111111111111111111111111111111111111111111111 111 22 6 1 66666666666 4 1 4 66 4 3 4 3 2 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. .. ... .. . . . . ... . . . ..... . .. . .. . . ...... . . .. ...... .............. . . .. ... ...................... .. ............... . .. ... . ............ . ...... ...... ........... . ... .. . . .... . . . . . ................. . .... . . . .. . .. . ............... . . . . ..... ......... . . . .. ... .. . . ..... . . . ..... .. . ...... . ....................................................... ... .. . . ........... . . . .. . . . . . . . . . . ... . .... .
lowQualScore : 2 0 22 00 555 00 0 8 2 3 777 3 0 7 00000 5 00 5 88 2 2 888888 0 3 33 777777 00000000000000 0 7 00 333 3333333333333333333333 00 333333333333333 0 55 888 0 888888888888 0 888888 444444 55555555555 0 000 88 4 2 4444 0 0 0 2 0 66666666666666666 0 0000 2 0 4 00 0 66 0 222222222222222 4 0 0 0 00000 222222222 0 4 0 22 888 66 0 0 77777 0 2 2 88888 22 0 444444 0 2222222222222222222222222222222222222222222222222222222 777 55 7 0 00000000000 9 0 4 11 0 8 0 4 0 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNNACA-----CTT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-GAAAATACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---CGTG-TTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTACCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGTGC--ATACNCGGT-ACAT-TTACAATTTCAA-TACAATACCCAGGTACACCGTCGATGTT-TCATTTCAGCCCTANTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCA-A-----CTT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATTTAGAATTTT-CGAA-----A--TG---C-AAAAATACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---CGTG-TTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ACTATTTGTTAACCCTTT--GGAAGT--ATAAAAAATAA-TAT-------ATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACAA--CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC-ATGCAGA--------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGTACAGT------TATAT-CTGT-T--ATACACGGT-ACAT---ACAATTTCAA-TACA---CCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGTAC-A-----CTCGC-TCTGTGTGTCTAAT-TTAATA-AATCGCACCATTTAGAATGTT-CCCA-----ACCTG---CCAAAAATAAAACGATACTGAATAAAATATGTCAAGGACAT--TTA---ATT-TGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACA---GGTG-CTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGGAAAA-CAGTTTATA---A-TAGTATGTTTCGATCAA-C--CTTGATGA-TCA-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : TTTTAACAAAACAGG-TTTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAATAAA-CAACAGATA---ACTGT---GGTTCAATCTA-C--CTTGTTGA-TAATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttGAATTTCATTATTTCAACA---TGTG-CTTTGTTCATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGG---TCGATGAAAAGTAAATATTTATAACATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaa---ACTGG---GTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGA-TCA-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|16 : t-TACAATATCTA-GTACGCTGTTGATGCTGT--TTTTTGTCCAATTTATCAGCCAca
gi|17 : cacagttcatcatctctgagtgaccacagtCAA-G--CTTATTGG-TAA-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTA
gi|18 : TTGA-TTA-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGG---CCCATAAGAGGTAA-TATTTGTAACCTTTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCAAATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT-ATGCAGA--GATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGAACGGTA-AA--TATATTGTGGGTCAATACTCAGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGT--GATACAATCCACATTCTAT-C--ATTTGTGACCACAT-TTACAACT---A-TACAA---CTAGGGA-GCCGCCGATGCTATC-TTTCGGCAA-AATTCTCGGCCATTTCGACATGTTCAATGCTAAAA-CTT-----------------TCCACGTGTTTA-CATGAAAA-TATCGCATGATAAAGAATTTT-TGAA-----AA-TG---CTAAAACTACGGCGACATTGAATGAAATGTGC-----ACAT--CCA----CC-TATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACA---CAGG-TTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTACGCA-CAACTGATA---ATTGA---GTTTCGATCTA-T--CTTGTTAA-TAA-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGA---TCCACAAAAGGTAA-TATATGTAACATTTATATTAAATATT-TGCTA-----TTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAATGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca--ATACCAAGT-ACATATTATA---TCAAACGCAATACCCAG-TACACCATCCATATT-T-ATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAA-TTTGGCA-AACTTTTTT-T-TCTTTGTGTCT---------A-AATCGTACATTTCAGAATTTT-CGAA-----AT-TG---G-AAAAAGACAACGTTATTGAATAAAATGTGC-----ACAT--ACT---ATTCCATCAA------------------------GAATTTCACCATTTTAACA---CGTG-TTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTACAAAC-CAGTAGCTA---G-TAG---GGTTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGA---TAAATAAAACTGACTGGTCGGAAAACAGA-----------TTCACATTT-ACATAAA--ACATGGTAA-T-TTAATGCAGGGTG--AATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTA-C--------TCTGTACAATTA--AATCA--GCT---CTGGGT----------CAATACCCTTAAC--ATAT---------T-TTA----TTAAA-TGCAATACTCA-GTACACC-TTAAT-TT-TCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAA-TTTGGAACA-----CTT-T-TTTTTGTGTCTc
gi|7 : tgtCAACGCTGAAA-CTTTTCACA-----CTT-GGCCTATTTGTTTATC-TGAACA-AATCGTACAATACAAAATATG-CGTC-----A--TT-------AAATACGG-----TT--------TGTGC-----ATATTTCCC---ATT-TATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATG---AATG-TTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCAACTGATA-----------GTTTCAACCAA-C--CATGTCGA-TCA-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGtaatttgagtcaataccaagtacatat
gi|8 : tA-C-TGAACACAATTACACGAAAAAGAATTTGATGAACAACTA--TGGGTT-GACGATAACGCGATATTGTGTATAATGTGC-----ATATG-CCACCCATT-TATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCA---T-TGTTTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AATTT---T
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACtttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttTG-TTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTACTAAA-CAGTACATGTAGACAGG---A----GACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Alignments
lowQualScore : 111 1 1 222 1 33333 111111 1 11 333333 55555555555555 11 222 5555555555555555555555 11 222222222222222 1 11 666666666666 222222 111111 22222222222 111 3333 3333333333333333 2222 66666666666666666666666666666 22222 222222222 11111 11 111111 7777777777777777777777777777777777777777777777777777777 111 22222222222 1 1111
lowQualScore : 0 1 11 99 777 55 0 9 0 3 555 3 1 3 00000 2 55 1 66 0 0 777777 1 3 88 555555 99999999999999 1 0 11 333 9999999999999999999999 33 555555555555555 2 22 333 1 000000000000 7 999999 888888 33333333333 8 777 555 6 3 0000 4 1 6 1 0 8 8888888888888888 1 3333 3 8 1 22 11111111111111111111111111111 8 1 1 1 1 00000 666666666 8 6 1 55 555 44 1 1 77777 0 1 77777 00 5 444444 5 1111111111111111111111111111111111111111111111111111111 111 22 6 1 66666666666 4 1 4 66 4 3 4 3 2 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. .. ... .. . . . . ... . . . ..... . .. . .. . . ...... . . .. ...... .............. . . .. ... ...................... .. ............... . .. ... . ............ . ...... ...... ........... . ... ... . . .... . . . . . . ................ . .... . . . .. ............................. . . . . . ..... ......... . . . .. ... .. . . ..... . . ..... .. . ...... . ....................................................... ... .. . . ........... . . . .. . . . . . . . . . . ... . .... .
lowQualScore : 2 0 22 00 555 00 0 8 2 3 777 3 0 7 00000 5 00 0 88 2 2 888888 0 3 33 777777 00000000000000 0 7 00 333 3333333333333333333333 00 333333333333333 0 55 888 0 888888888888 0 222222 444444 22222222222 0 000 888 4 2 4444 6 4 0 0 2 0 2222222222222222 0 0000 2 0 4 44 44444444444444444444444444444 0 4 0 0 0 00000 222222222 0 4 0 22 888 66 0 0 44444 2 2 88888 22 0 444444 0 2222222222222222222222222222222222222222222222222222222 777 55 7 0 00000000000 9 0 4 11 0 8 0 4 0 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNNACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ACTATTTGTTAACCCTTT--GGAAGT--ATAAAAAATAA-TAT-------ATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACAA--CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC-ATGCAGA--------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGTACAGT------TATAT-CTGT-T--ATACACGGT-ACAT---ACAATTTCAA-TACA---CCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGT-ACAC----TCGC-TCTGTGTGTCTAAT-TTAATA-AATCGCACCATTTAGAATGTT-CCCA-----ACCTG---CCA--A--AAA-TAAAACGATACTGAATAAAATATGTCAAGGACAT--TTA---ATT-TGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACA---G-GTGCTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGGAAAA-CAGTTTATA---A-TAGTATGTTTCGATCAA-C--CTTGATGA-TCA-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : TTTTAACAAAAC-AGGTTTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAATAAA-CAACAGATA---ACTGT---GGTTCAATCTA-C--CTTGTTGA-TAATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttGAATTTCATTATTTCAACA---T-GTGCTTTGTTCATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGG---TCGATGAAAAGTAAATATTTATAACATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaa---ACTGG---GTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGA-TCA-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|16 : t-TACAATATCTAG-TACGCTGTTGATGCT-GT-TTTTTGTCCAATTTATCAGCCAca
gi|17 : cacagttcatcatctctgagtgaccacagtCAA-G--CTTATTGG-TAA-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTA
gi|18 : TTGA-TTA-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGG---CCCATAAGAGGTAA-TATTTGTAACCTTTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCAAATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT-ATGCAGA--GATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGAACGGTA-AA--TATATTGTGGGTCAATACTCAGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGT--GATACAATCCACATTCTAT-C--ATTTGTGACCACAT-TTACAACT---A-TACAA---CTAGGGA-GCCGCCGATGCTATC-TTTCGGCAAAATT-CTCGGCCATTTCGACATGTTCAATGCTAAAA-CTT----------------TCCACGTGTTTA-CATGAAAA-TATCGCATGATAAAGAATTTT-TGAA-----AA-TG---C-T--A--AAACTACGGCGACATTGAATGAAATGTGC-----ACAT--CCA----CC-TATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACA---C-AGGTTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTACGCA-CAACTGATA---ATTGA---GTTTCGATCTA-T--CTTGTTAA-TAA-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGA---TCCACAAAAGGTAA-TATATGTAACATTTATATTAAATATT-TGCTA-----TTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAATGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca--ATACCAAGT-ACATATTATA---TCAAACGCAATACCCAG-TACACCATCCATATT-T-ATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAA-TTTGGCAAACTTTTTT-T-TCTTTGTGTCT---------A-AATCGTACATTTCAGAATTTT-CGAA-----AT-TG---G-A--A--AAA-GACAACGTTATTGAATAAAATGTGC-----ACAT--ACT---ATTCCATCAA------------------------GAATTTCACCATTTTAACA---C-GTGTTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTACAAAC-CAGTAGCTA---G-TAG---GGTTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGA---TAAATAAAACTGACTGGTCGGAAAACAGA-----------TTCACATTT-ACATAAA--ACATGGTAA-T-TTAATGCAGGGTG--AATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTA-C--------TCTGTACAATTA--AATCA--GCT---CTGGGT----------CAATACCCTTAAC--ATAT---------T-TTA----TTAAA-TGCAATACTCA-GTACACC-TTAAT-TT-TCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAA-TTTGGAACAC----TT-T-TTTTTGTGTCTc
gi|7 : tgtCAACGCTGAAA-CTTTTCACAC----TT-GGCCTATTTGTTTATC-TGAACA-AATCGTACAATACAAAAT-------------A--TG---C-GTCATTAAA-TACGG-----TT--------TGTGC-----ATATTTCCC---ATT-TATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATG---A-ATGTTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCAACTGATA-----------GTTTCAACCAA-C--CATGTCGA-TCA-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGtaatttgagtcaataccaagtacatat
gi|8 : tA-C-TGAACACAATTACACGAAAAAGAATTTGATGAACAACTA--TGGGTT-G--A--CGA-TAACGCGATATTGTGTATAATGTGC-----ATATG-CCACCCATT-TATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCA---TTGT-TTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AATTT---T
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACtttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttTGTTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTACTAAA-CAGTACATGTAGACAGG---A----GACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Alignments
lowQualScore : 111 1 1 222 1 33333 111111 1 11 333333 55555555555555 11 222 5555555555555555555555 11 222222222222222 1 11 666666666666 222222 111111 22222222222 111 3333 333333333 2222 66666666666666666666666666666 22222 222222222 11111 11 111111 7777777777777777777777777777777777777777777777777777777 111 22222222222 111111111 1111
lowQualScore : 0 1 11 99 777 55 0 9 0 3 555 3 1 3 00000 2 55 1 66 0 0 777777 1 3 88 555555 99999999999999 1 0 11 333 9999999999999999999999 33 555555555555555 2 22 333 1 000000000000 7 999999 888888 33333333333 8 777 555 6 3 0000 4 1 6 1 0 8 66 0 111111111 3 3333 3 8 1 22 11111111111111111111111111111 8 1 1 1 1 00000 666666666 8 6 1 55 555 44 1 1 77777 0 1 77777 00 5 444444 5 1111111111111111111111111111111111111111111111111111111 111 22 6 1 66666666666 4 1 4 66 333333333 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. .. ... .. . . . . ... . . . ..... . .. . .. . . ...... . . .. ...... .............. . . .. ... ...................... .. ............... . .. ... . ............ . ...... ...... ........... . ... ... . . .... . . . . . . .. . ......... . .... . . . .. ............................. . . . . . ..... ......... . . . .. ... .. . . ..... . . ..... .. . ...... . ....................................................... ... .. . . ........... . . . .. ......... . . . . . ... . .... .
lowQualScore : 2 0 22 00 555 00 0 8 2 3 777 3 0 7 00000 5 00 0 88 2 2 888888 0 3 33 777777 00000000000000 0 7 00 333 3333333333333333333333 00 333333333333333 0 55 888 0 888888888888 0 222222 444444 22222222222 0 000 888 4 2 4444 6 4 0 0 2 0 00 8 222222222 8 0000 2 0 4 44 44444444444444444444444444444 0 4 0 0 0 00000 222222222 0 4 0 22 888 66 0 0 44444 2 2 88888 22 0 444444 0 2222222222222222222222222222222222222222222222222222222 777 55 7 0 00000000000 9 0 4 11 222222222 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGATN-A-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGATN-A-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ACTATTTGTTAACCCTTT--GGAAGT--ATAAAAAATAA-TAT-------ATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACAA--CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC-ATGCAGA--------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGTACAGT------TATAT-CTGT-T--ATACACGGT-ACAT---ACAATTTCAA-TACA---CCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGT-ACAC----TCGC-TCTGTGTGTCTAAT-TTAATA-AATCGCACCATTTAGAATGTT-CCCA-----ACCTG---CCA--A--AAA-TAAAACGATACTGAATAAAATATGTCAAGGACAT--TTA---ATT-TGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACA---G-GTGCTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGGAAAA-CAGTTTATA---A-TAGTATGTTTCGATCAA-C--CTTGATGATC-A-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : TTTTAACAAAAC-AGGTTTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAATAAA-CAACAGATA---ACTGT---GGTTCAATCTA-C--CTTGTTGATA-ATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttGAATTTCATTATTTCAACA---T-GTGCTTTGTTCATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGG---TCGATGAAAAGTAAATATTTATAACATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaa---ACTGG---GTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGATC-A-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|16 : t-TACAATATCTAG-TACGCTGTTGATGCT-GT-TTTTTGTCCAATTTATCAGCCAca
gi|17 : cacagttcatcatctctgagtgaccacagtCAA-G--CTTATTGGTA-A-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTA
gi|18 : TTGATT-A-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGG---CCCATAAGAGGTAA-TATTTGTAACCTTTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCAAATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT-ATGCAGA--GATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGAACGGTA-AA--TATATTGTGGGTCAATACTCAGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGT--GATACAATCCACATTCTAT-C--ATTTGTGACCACAT-TTACAACT---A-TACAA---CTAGGGA-GCCGCCGATGCTATC-TTTCGGCAAAATT-CTCGGCCATTTCGACATGTTCAATGCTAAAA-CTTTCCAC----------------GTGTTTA-CATGAAAA-TATCGCATGATAAAGAATTTT-TGAA-----AA-TG---C-T--A--AAACTACGGCGACATTGAATGAAATGTGC-----ACAT--CCA----CC-TATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACA---C-AGGTTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTACGCA-CAACTGATA---ATTGA---GTTTCGATCTA-T--CTTGTTAATA-A-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGA---TCCACAAAAGGTAA-TATATGTAACATTTATATTAAATATT-TGCTA-----TTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAATGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca--ATACCAAGT-ACATATTATA---TCAAACGCAATACCCAG-TACACCATCCATATT-T-ATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAA-TTTGGCAAACTTTTTT-T-TCTTTGTGTCT---------A-AATCGTACATTTCAGAATTTT-CGAA-----AT-TG---G-A--A--AAA-GACAACGTTATTGAATAAAATGTGC-----ACAT--ACT---ATTCCATCAA------------------------GAATTTCACCATTTTAACA---C-GTGTTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTACAAAC-CAGTAGCTA---G-TAG---GGTTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGA---TAAATAAAACTGACTGGTCGGAAAACAGA-----------TTCACATTT-ACATAAA--ACATGGTAA-T-TTAATGCAGGGTG--AATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTA-C--------TCTGTACAATTA--AATCA--GCT---CTGGGT----------CAATACCCTTAAC--ATAT---------T-TTA----TTAAA-TGCAATACTCA-GTACACC-TTAAT-TT-TCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAA-TTTGGAACAC----TT-T-TTTTTGTGTCTc
gi|7 : tgtCAACGCTGAAA-CTTTTCACAC----TT-GGCCTATTTGTTTATC-TGAACA-AATCGTACAATACAAAAT-------------A--TG---C-GTCATTAAA-TACGG-----TT--------TGTGC-----ATATTTCCC---ATT-TATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATG---A-ATGTTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCAACTGATA-----------GTTTCAACCAA-C--CATGTCGATC-A-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGtaatttgagtcaataccaagtacatat
gi|8 : tA-C-TGAACACAATTACACGAAAAAGAATTTGATGAACAACTA--TGGGTT-G--A--CGA-TAACGCGATATTGTGTATAATGTGC-----ATATG-CCACCCATT-TATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCA---TTGT-TTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AATTT---T
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACtttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttTGTTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTACTAAA-CAGTACATGTAGACAGG---A----GACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Alignments
lowQualScore : 111 1 1 222 1 33333 111111 1 11 333333 55555555555555 11 222 5555555555555555555555 11 222222222222222 1 11 666666666666 222222 111111 22222222222 111 3333 333333333 2222 66666666666666666666666666666 22222 222222222 11111 11 111111 7777777777777777777777777777777777777777777777777777777 111 22222222222 111111111 1111
lowQualScore : 0 1 11 99 777 55 0 9 0 3 555 3 1 3 00000 2 55 1 66 0 0 777777 1 3 88 555555 99999999999999 1 0 11 333 9999999999999999999999 33 555555555555555 2 22 333 1 000000000000 7 999999 888888 33333333333 8 777 555 6 3 0000 4 1 6 1 0 8 66 0 111111111 3 3333 3 8 1 22 11111111111111111111111111111 8 1 1 1 1 00000 666666666 8 6 1 55 555 44 1 1 77777 0 1 77777 00 5 444444 5 1111111111111111111111111111111111111111111111111111111 111 22 6 1 66666666666 4 1 4 66 333333333 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. .. ... .. . . . . ... . . . ..... . .. . .. . . ...... . . .. ...... .............. . . .. ... ...................... .. ............... . .. ... . ............ . ...... ...... ........... . ... ... . . .... . . . . . . .. . ......... . .... . . . .. ............................. . . . . . ..... ......... . . . .. ... .. . . ..... . . ..... .. . ...... . ....................................................... ... .. . . ........... . . . .. ......... . . . . . ... . .... .
lowQualScore : 2 0 22 00 555 00 0 8 2 3 777 3 0 7 00000 5 00 0 88 2 2 888888 0 3 33 777777 00000000000000 0 7 00 333 3333333333333333333333 00 333333333333333 0 55 888 0 888888888888 0 222222 444444 22222222222 0 000 888 4 2 4444 6 4 0 0 2 0 00 8 222222222 8 0000 2 0 4 44 44444444444444444444444444444 0 4 0 0 0 00000 222222222 0 4 0 22 888 66 0 0 44444 2 2 88888 22 0 444444 0 2222222222222222222222222222222222222222222222222222222 777 55 7 0 00000000000 9 0 4 11 222222222 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGATN-A-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGATN-A-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ACTATTTGTTAACCCTTT--GGAAGT--ATAAAAAATAA-TAT-------ATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACAA--CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC-ATGCAGA--------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGTACAGT------TATAT-CTGT-T--ATACACGGT-ACAT---ACAATTTCAA-TACA---CCC--GTACACCATCGATGTT--CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGT-ACAC----TCGC-TCTGTGTGTCTAAT-TTAATA-AATCGCACCATTTAGAATGTT-CCCA-----ACCTG---CCA--A--AAA-TAAAACGATACTGAATAAAATATGTCAAGGACAT--TTA---ATT-TGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACA---G-GTGCTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGGAAAA-CAGTTTATA---A-TAGTATGTTTCGATCAA-C--CTTGATGATC-A-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : TTTTAACAAAAC-AGGTTTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAATAAA-CAACAGATA---ACTGT---GGTTCAATCTA-C--CTTGTTGATA-ATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttGAATTTCATTATTTCAACA---T-GTGCTTTGTTCATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGG---TCGATGAAAAGTAAATATTTATAACATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaa---ACTGG---GTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGATC-A-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|16 : t-TACAATATCTAG-TACGCTGTTGATGCT-GT-TTTTTGTCCAATTTATCAGCCAca
gi|17 : cacagttcatcatctctgagtgaccacagtCAA-G--CTTATTGGTA-A-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTA
gi|18 : TTGATT-A-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGG---CCCATAAGAGGTAA-TATTTGTAACCTTTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCAAATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT-ATGCAGA--GATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGAACGGTA-AA--TATATTGTGGGTCAATACTCAGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGT--GATACAATCCACATTCTAT-C--ATTTGTGACCACAT-TTACAACT---A-TACAA---CTAGGGA-GCCGCCGATGCTATC-TTTCGGCAAAATT-CTCGGCCATTTCGACATGTTCAATGCTAAAA-CTTTCCAC----------------GTGTTTA-CATGAAAA-TATCGCATGATAAAGAATTTT-TGAA-----AA-TG---C-T--A--AAACTACGGCGACATTGAATGAAATGTGC-----ACAT--CCA----CC-TATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACA---C-AGGTTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTACGCA-CAACTGATA---ATTGA---GTTTCGATCTA-T--CTTGTTAATA-A-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGA---TCCACAAAAGGTAA-TATATGTAACATTTATATTAAATATT-TGCTA-----TTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAATGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca--ATACCAAGT-ACATATTATA---TCAAACGCAATACCCAG-TACACCATCCATATT-T-ATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAA-TTTGGCAAACTTTTTT-T-TCTTTGTGTCT---------A-AATCGTACATTTCAGAATTTT-CGAA-----AT-TG---G-A--A--AAA-GACAACGTTATTGAATAAAATGTGC-----ACAT--ACT---ATTCCATCAA------------------------GAATTTCACCATTTTAACA---C-GTGTTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTACAAAC-CAGTAGCTA---G-TAG---GGTTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGA---TAAATAAAACTGACTGGTCGGAAAACAGA-----------TTCACATTT-ACATAAA--ACATGGTAA-T-TTAATGCAGGGTG--AATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTA-C--------TCTGTACAATTA--AATCA--GCT---CTGGGT----------CAATACCCTTAAC--ATAT---------T-TTA----TTAAA-TGCAATACTCA-GTACACC-TTAAT-TT-TCATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAA-TTTGGAACAC----TT-T-TTTTTGTGTCTc
gi|7 : tgtCAACGCTGAAA-CTTTTCACAC----TT-GGCCTATTTGTTTATC-TGAACA-AATCGTACAATACAAAAT-------------A--TG---C-GTCATTAAA-TACGG-----TT--------TGTGC-----ATATTTCCC---ATT-TATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATG---A-ATGTTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCAACTGATA-----------GTTTCAACCAA-C--CATGTCGATC-A-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGtaatttgagtcaataccaagtacatat
gi|8 : tA-C-TGAACACAATTACACGAAAAAGAATTTGATGAACAACTA--TGGGTT-G--A--CGA-TAACGCGATATTGTGTATAATGTGC-----ATATG-CCACCCATT-TATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCA---TTGT-TTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AATTT---T
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACtttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttTGTTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTACTAAA-CAGTACATGTAGACAGG---A----GACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
blockSeqs : T CA CA . CG A T . ACG . C C GATC G CC C AT TAAGCA A . . GCGTT GATAAAGAATG T TC . AGCTTTTAAATC GC GCAAAACAAATCTAC T AT ATT C GATACAATCC T GGGTCA GTGACC TTACAACT A ATA AGG G G ATC T A T T . CC TTTTTTT T ACA A C G AA TTGATGAACAACTATGGGTTGA C G A A A . GCCACCCA C A A GA CCG GT A T AAAC T TGGTT GC A AATATG C TAGTCAAATATAATGTTATAACGTG GGT AT G A TAGACAGG G T T TG AATAAAT A C C G A ATC T ATCA A
blockSeqs : C AA CC . CC . T . . . T A G T CG C AA GCAAAG T . . TTTA GTGAATAGAA G TT . ATGCTCCTTT T CTCTGT . A ATA A ACGGTAAAT T TAAC TCAGT ATTATATC . ATA AG G G TCA G A T G . GC TTGG T ATC C . A TC TTTTGAAAATGCTA . A T A A . TTCCCA . G T GC TAT GT G A TT C TTTCA GC . . . TCGTTACGCGAATTATGAATGCAA . AC . T ACTGT T A . . TTAAACT . C . . G GT C ATCA G
blockSeqs : A TT CT . CC . A . . A AA . . . G CA C ATC CAAGT TTATTA . ATA AG A A GT A T A G . GA TTT A AC C . A AC TTTCGAAATTGGAA . G A T T . ACTA . A A AC CAT TC A C T T TTGAA T . . . TGATCCCACTAAGTTTGTAACTTG . CA . A ACTGG T A . . CAAATTC . T . . G AA T CA G
blockSeqs : . . A AG . . TA A T . . TC . . . . . G AA ATGCGTCATT . C . . . . CCA . . . . . . T A C C TTTCA C . . . TCGTTACACGATGTGCATA . AT . T ATTGA G A . . TAAATTT . C . . G TG T CA G
blockSeqs : T C C T GTTC C . . . ACGAATAGTGTATCCTG . CT . A GTAG T T . . AAATAT . C . . G TG T AA G
blockSeqs : A T AGCC T . . . . . T . . AAAAAA . C . . G AC T TT G
blockSeqs : A GTTC . . . . A . . CAAAAT . T . . G TC T AA G
blockSeqs : T . . T . . . . T TG T CA C
blockSeqs : . . . . . . TA . G .
blockSeqs : . . . AA . A .
blockSeqs : . . . . .
blockSeqCons : ATA AG* TN** NC TT******* TTTCGAAATTGA***************** ***** NCCCCA*** ACTGG******
originalCons : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGGTACGCCGTCGATGTT-TCATTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC----TT-T-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTT-CGAA-----A--TG---C-G--A--AAA-TACGGCGATATTGAATAAAATGTGC-----ACAT--CCA---ATT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGATN-A-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
finalCons : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAG-TACGCCGTCGATGTTTN--TTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACACTT-------TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAATTTTCGAAATTGA-----------------AAA-TACGGCGATATTGAATAAAATGTGC-----ACATNCCCCA---TT-TATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---C-GTGTTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATAACTGG------GTTTCGATCNA-C--CTTGTTGATN-A-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC
Alignments
lowQualScore : 111 1 1 222 1 33333 111111 1 11 333333 55555555555555 11 222 5555555555555555555555 11 222222222222222 1 11 666666666666 222222 111111 22222222222 111 444444444 2222 11 5555555555555555 22222 333333 11111 11 111111 7777777777777777777777777777777777777777777777777777777 111 22222222222 1 1111
lowQualScore : 0 1 11 99 777 55 0 9 0 3 555 3 1 3 00000 2 55 1 66 0 0 777777 1 3 88 555555 99999999999999 1 0 11 333 9999999999999999999999 33 555555555555555 2 22 333 1 000000000000 7 999999 888888 33333333333 8 777 0 6 000 4 1 6 1 0 8 66 0 444444444 3 3333 3 8 1 22 8 11 7777777777777777 8 1 1 1 1 00000 666666 0 22 1 55 55 22 1 1 55555 5 0 1 77777 00 5 444444 5 1111111111111111111111111111111111111111111111111111111 111 22 6 1 66666666666 4 1 4 66 4 3 4 3 2 4 2 3 3 3 777 2 2222 2
lowQualScore : . . .. .. ... .. . . . . ... . . . ..... . .. . .. . . ...... . . .. ...... .............. . . .. ... ...................... .. ............... . .. ... . ............ . ...... ...... ........... . ... . . ... . . . . . . .. . ......... . .... . . . .. . .. ................ . . . . . ..... ...... . .. . .. .. .. . . ..... . . . ..... .. . ...... . ....................................................... ... .. . . ........... . . . .. . . . . . . . . . . ... . .... .
lowQualScore : 2 0 22 00 555 00 0 8 2 3 777 3 0 7 00000 5 00 0 88 2 2 888888 0 3 33 777777 00000000000000 0 7 00 333 3333333333333333333333 00 333333333333333 0 55 888 0 888888888888 0 222222 444444 22222222222 0 000 8 4 888 6 4 0 0 2 0 00 8 666666666 8 0000 2 0 4 44 0 66 0000000000000000 0 4 0 0 0 00000 222222 8 00 0 22 22 88 0 0 77777 0 2 2 88888 22 0 444444 0 2222222222222222222222222222222222222222222222222222222 777 55 7 0 00000000000 9 0 4 11 0 8 0 4 0 0 3 6 3 8 777 4 8888 8
consensus : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGTACGCCGTCGATGTT-CNTTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACACT----TTG-TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAAT-TTN-CGAA---------ATTGC--AAAA-TACGGCGATATTGAATAAAATGTGC-----ACATNC--CCCATTTATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---CGTG-TTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
Reference ( family-2465 ) : ACTATTTGCTNTCCNTTTCCGG---TCCATAAAAGGTAA-TATTTGTAACATTTATACCAAATATT-GACTAA--TATTCA-TTNCTACACGAGTAAAATCGCGAGAT-CGAAGTGTGACGGTTANCAAAACTGACTGGTCGGAAAACAGATNAGCGGGAAGTTCACATNT-ACTTAAA--ATATGGTAA-C-TT-ATGCAGA--G--AA-AGAA-GAACANTTTCCCGCTTTTCAAAACAA---ACAGAA-----ATGCTNNT---T-T---TTGNTTTTTTTAGCAAGA-AAATCTGCACATTTACCAATCAATACTATACTNGGTACGGTA-AA-CTATATTCTGNGC--ATACNCGGT-ACAT-TTACAACTTCAA-TACAATACCCAGTACGCCGTCGATGTT-TNTTTCGGCCCTATTTCTCAGCCANTTCAATGTATGCAACGCTGAAA-CTTGNCACAC-----TT--TCTNTGTGTCTA-C-TGAACA-AATCGCACGATANAGAAT-TTT-CGAA---------ATTG---AAAA-TACGGCGATATTGAATAAAATGTGC-----ACATNC--CCCATTTATCAAGTGATAAGNTTGACNTTCAATCGCGANTTTCANCATTTCAACA---CGTG-TTTGGTTCATTTCACGTGTNTCCGGA-CATTTACACATCAG-T------TAGTTA-T-----T----------AG--T---ATAC----------AATGT---TA-------TAGT---CGTAANAAA-CAGCNGATA---ACTGG---GTTTCGATCNA-C--CTTGTTGA-TNA-AAAT-A-TTCCCA-ATT-TTCGAAAANN-TCTTATA--ATTTTAGAGCAATATCCGGTGTACGTTGTAC
gi|1 : ACTATTTGTTAACCCTTT--GGAAGT--ATAAAAAATAA-TAT-------ATTTATGTTAAATTTTAGACTAA--TATTCAATTGATGGACGAGTACCATCGTGA-ATGTGAAGTGTGACGGTTAACAA--CTGAATCGACGGAAATCAGATTAGCAGGAAGTTCACATCTTAGTTATATCATATTATATTC-TC-ATGCAGA--------AGG--GAACACGTAACCGCTTT---AAACAGTTTACAGAACGTCAAT-CTAAT---TATAAATTAATTTTTTTCGTAAGA-AAAT----ACATTTACCATTCAATACTATACTTAGTACAGT------TATAT-CTGT-T--ATACACGGT-ACAT---ACAATTTCAA-TACA---CCC-GTACACCATCGATGTT-CGTTTCAGTCCTATTTCTCAACCATTTCAATATATACGATGCTAAAATCGTGT-ACAC-----TCGCTCTGTGTGTCTAAT-TTAATA-AATCGCACCATTTAGAATGTTC-CCAA---------CCTGCCAAAAA-TAAAACGATACTGAATAAAATATGTCAAGGACATTT--A--ATTTGTCAAGTGATAAAGTTGATTTTCAATCACGATTTTCATCATTTCAACA---GGTG-CTTGTTTTATAACACGTGTATCCGAA-CATTTACACATAAG-T------TACTTA-T-----T----------AG--T---AT-C----------AAT--------------TAGT---CATGGAAAA-CAGTTTATA---A-TAGTATGTTTCGATCAA-C--CTTGATGA-TCA-AAATCA-TTTTTG-ATT-TTCGAAAAAA-TCTTATA--ATTTTAGTGCAATATCCGGTGTACGTTGTAC
gi|10 : TTTTAACAAAACAGG-TTTACTTCGTATCAAGTA-GTTCGGA---TTTACATATTTGAT------TAGTTA-T-----T----------CG--TT--ACAC----------GATGTGCATA-------TGGTGGTCGCAATAAA-CAACAGATA---ACTGT---GGTTCAATCTA-C--CTTGTTGA-TAATAAAT-A-TTCCAA-ATT-TCC-AAAAGT-TCTTATC--ATTTTAGAGCAATATCCGGTGTACATTGTAC
gi|11 : ttttGAATTTCATTATTTCAACA---TGTG-CTTTGTTCATTCCACTTGTGGTTGGA-TATTTTCACATCAG-T------TAGTTG-T-----T----------AG--T----TAC----------A
gi|13 : agacaatgttaatactaaaatattaagaacatatatcttgggACTATTTGCTTTCCATTTCAGG---TCGATGAAAAGTAAATATTTATAACATTTATACCAAATtaaatctt
gi|14 : ccatgcgtggcttatgcacaaaccggaa---ACTGG---GTTTCAACCAATC--CTTGTTGATTTA-AACT-A-TTCTTG-ATT-TTCAAAAAAA-TC-------GTTTCAGAGTAATATCTGCTCTAC-CTGTAC
gi|15 : TCAA-CTGCTTGTTGA-TCA-AATTCA-TTTCCA-ATT-TCCGAAAAATCTCTCATC--ATTTTAAGTCCATATCCGGTGTAC-TTTTAC
gi|16 : t-TACAATATCTAGTACGCTGTTGATGCT-GTTTTTTGTCCAATTTATCAGCCAca
gi|17 : cacagttcatcatctctgagtgaccacagtCAA-G--CTTATTGG-TAA-ATAT-AATTCCCA-ATT-TCCGAAAATG-CCTTATA--ATTTTAGGGCAA-----AGTGTGCGTTGTA
gi|18 : TTGA-TTA-AATTTA-TTCCCA-ATT-TTGGAAAATG-TCCTATATCACTTTAGATCAATATCCAGTATATGTTGTAtc
gi|19 : A-ATT-TTT--AAAAC-TCTTATT--TCTTTAGTGCAATATCCGGTGTACGTTGCAa
gi|2 : aaacacatttaacaTTTGCTCTCAATTTCCGG---CCCATAAGAGGTAA-TATTTGTAACCTTTATACCAACTATT-GACTAACGTATTCA-TTCCTACACAAATAAAATCCCGAG--------TGTGACCGCTACCAAATCTGATTGGTCGGAAAACTGATAAGCAGGAAGCTCACATAT-ACTTAAG--ATATGGTAAGCGTT-ATGCAGA--GATAA-AGAATGAACATTTTCCCACTTTTCAAAACAA---ACAGAA-----ATGCTCCT---T-T---TTGCTTTTTTTAGCAAAACAAATCTACGCATTTATCAATGAA-ACCATTCTCGGAACGGTA-AA--TATATTGTGGGTCAATACTCAGT-ACAtca
gi|3 : taaatagttcaagaacttattagacagctgatcatggaaaaaacacataccggatcgaaaactacagagcatttagccaagagatgttttaaaagccggttagatttcgggattattcatatttacacacaagaatagaatacgaaatatcaaaaaagctaaaaactcgattaacgtcaacaatatagatatgtttcccgttaaaactattcaattatcaattttcctcatttagatggggttgtgctcagagttacatcattgcttacgaaataaacggcaatcatttTCAATATTATAGTAAGT--GATACAATCCACATTCTAT-C--ATTTGTGACCACAT-TTACAACT---A-TACAA---CTAGGGAGCCGCCGATGCTATCTTTCGGCAAAATT-CTCGGCCATTTCGACATGTTCAATGCTAAAA-CTTTCCAC----------------GTGTTTA-CATGAAAA-TATCGCATGATAAAGAAT-TTT-TGAA---------AATGCT-AAAACTACGGCGACATTGAATGAAATGTGC-----ACAT-----CCACCTATCACATTATAAGATTGACCGTCAATCGTGAGTTTTAACATACCGACA---CAGG-TTTTGTTCTATTCACGT--AGCCGAAGCATTGCCACATCAA-T------TAGTTA-T-----T----------CG--T----TACGCGAATTATGAATGC---AA-------CAGT---CGTTACGCA-CAACTGATA---ATTGA---GTTTCGATCTA-T--CTTGTTAA-TAA-AAAA-A-GT-CCA-ATTGTTCG---ATC-TCT-------------AGCGATATCCAGTGTACGCTGT
gi|4 : ACTATTTGATATCTTTTTCTGA---TCCACAAAAGGTAA-TATATGTAACATTTATATTAAATATT-TGCTA-----TTCA-TTTCCACACGAGTTAAATCACGAGAT-CGAAGTGTAACGGTTACCAGAAATGACTAGTCAGAAAACAGAGCAAAGGGAAGTTCTCATtcca
gi|5 : caaatggtttccagaactaactaggtaggtggaggaaactacacacgccagatcggagaaacatagaactttaagcctttaggtggttataaaagcaagtgaagttttggcactctccctttttacagacaagatacgatacgaactatcaagacagataaagactcgtttgacttcaacaatataggcacacttcctgcttaagctatacttgttaattctcctcatacgccgggttacactaggcgtggtttatgcgcagcccggca--ATACCAAGT-ACATATTATA---TCAAACGCAATACCCAGTACACCATCCATATT-TATTTCAGCCTTATTTCTCACCTAGTTTAATGTATGCAACGCTGAAA-TTTGGCAAACTTTTTTT--TCTTTGTGTCT---------A-AATCGTACATTTCAGAAT-TTT-CGAA---------ATTGGA-AAAA-GACAACGTTATTGAATAAAATGTGC-----ACATAC--------TA-------------------TTCCATCAAGAATTTCACCATTTTAACA---CGTG-TTTGATTCTGTCCACTTGTTTCATGC-CATTTACGCATCCG-T------TAGTTG-T-----T----------AG--TCAAATAT----------AATGT---TATAACGTGTAGT---CGTACAAAC-CAGTAGCTA---G-TAG---GGTTAAATCTT-C--CT--------------T-A-TTCCCA-ATT-TTCGAAAATG-TCTTATATCATTTTAGAGCAGTATCTGGTGTACGTTATAC
gi|6 : caGAATTGTGA---TAAATAAAACTGACTGGTCGGAAAACAGA-----------TTCACATTT-ACATAAA--ACATGGTAA-T-TTAATGCAGGGTG--AATAGAA--AACTGTTTCGCACATTTTAAAGCAA---ACTTAA-----A-GCTTTTAAAT-C---TT-TTTTTTTTA-C--------TCTGTACAATTA--AATCA--GCT---CTGGGT----------CAATACCCTTAAC--ATAT---------T-TTA----TTAAA-TGCAATACTCAGTACACC-TTAATTTT-CATTTCAGCCCTAATAAGCAGCCAGTTTAATGTATGCATTACTGAAA-TTTGGAACACT----TT--TTTTTGTGTCTc
gi|7 : tgtCAACGCTGAAA-CTTTTCACAC-----TTGGCCTATTTGTTTATC-TGAACA-AATCGTACAATACAAAAT-ATG-CGTC---------ATT-----AAA-TACGG-----TT--------TGTGC-----ATATTT--CCCATTTATCAAGTGATTAGCTTGATATTCAATAGTGATGTTTAACATTTCAATG---AATG-TTCGGTTCATTTAACGTG-GTTCGGAGCATTAACACATCAA-T------AAGCAA-CACGAAT----------AG--T---GT-------------ATCC---TG-------TAGT---CATAATAAAGCAACTGATA-----------GTTTCAACCAA-C--CATGTCGA-TCA-AAAT-A-ATTCCACATT-TTCGAATATA-TAAT-TA--ATTTTAGtaatttgagtcaataccaagtacatat
gi|8 : tA-C-TGAACACAATTACACGAAAAAGAAT-TTGATGAACAACTATGGGTTG---ACGA-TAACGCGATATTGTGTATAATGTGC-----ATATGCCACCCATTTATCAAATGATAAACTCGACATTGAATCTCAATTT--ACCATTTCATCA---T-TGTTTTGAGCCATTTCACGTGTTGAAGAG-CATTTACACATCAG-T------TATTTACT-----T----------AGCAC---ATAC----------AATTT---T
gi|8 : caTT-TTTTAAAAAA-TCC-ATA---TTTTAGAGCAATATCCGGTGTACGTTGTACtttttaaaaaatccatattttagagcaatatccggtgtacgttgtacc
gi|9 : caactgaacacaattacacgaaaaagaatttgatgaacaactatgggttgacgataacgcgatattgtgtataatgtgcatatgccacccatttatcaaatgataaactcgacattgaatctcaatttaccatttcatcattgttttgagccatttcacgtgttgaagagcatttacacatcagttatttacttagcacatacaatttTG-TTTGGTCCACTACTCTTGTTTCAAAA-TATTTATACATCAG-TAATATGTAACTG-T-----TGATCCCACTAAG--T---TTGT----------AAC-T---TG-------TAGT---CGTACTAAA-CAGTACATGTAGACAGG---A----GACCTA-C--CTTAT--------------------A-ATT-TT---------TTTTATC--ATTTTAGAGCAGTATTCGATGTACCGTGTACc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTTGGTTACAGAAGCAAGTGAAATAAAGGCGCTCTCCCTATTCACTGGCAAGTTCTAGTGTAAGGAATGTCAAGAAAGCTATAGACTTGTTTCTGAACAAAATGGCAACTTTTTAC