lowQualScore : 7777 222 1
lowQualScore : .... ... .
lowQualScore : 9999 333 3
consensus : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
Reference ( gi|10 ) : AGGTTCCTAGCCTGGAGTTCC---CAG---GCAGGA-GGGGATTGAAG
gi|9 : AGGTTCCTAGCCTAGAGTTCC---TAG---GCTGGA-GGGGACTGAA
gi|6 : AGGTTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAAc
gi|27 : gAGGTTCCTAGTCTGGTGTCCC---AAG---GCAGGA-t
gi|8 : aagAGGTTCCTAGACCAGAGTTCC---TGG---GCAGAA-
gi|2 : caagGGTTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GAGGATaatatt
gi|11 : GTTCCTAGTCTGGAGTTCC---TAG---GCAGGA-GGGGCTTGAcatttgaa
gi|13 : gatGTTTCTAGCCTGGTGTTCC---TAG---GCAGGA-GGGAATTGAA
gi|1 : GTTCCTAGACTTGAGTTCC---CAG---GCAGGA-AGGAATTGAAc
gi|3 : gatGTTCCTAGCCTGGAGTTCTAAGTAG---ATAGGA-GAGGATTGAAcc
gi|21 : tTTCCTAGCCTGGAGTTCC---TAG---GCAGGAGGGGGACTGAc
gi|5 : TTCCTAGCCTGGAGTTCC---TGG---ACAAGA-GGGGATTAAA
gi|14 : gacaTTTCTAGCCTGGAGTTCC---TAT---GCAGAA-GGGGACTGc
gi|26 : gaaaTTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGA
gi|4 : TTTTTAGCCTGGAGTTCC---TAG---AC---A-AGGGATTAA
gi|22 : gcgcTCCTAGCCTGGAATTCC---TAG---GCAGGA-GGGGATTGGAttaaac
gi|23 : TCCTAGCCTGAAATTCC---TAG---GCAGGA-GGGGATTGGAc
gi|16 : TCCTAGCCTGGAGTTTC---TAG---GCAAGA-GGGGATAGAAc
gi|15 : TCCTAGCCTGGAGTTCC---TAG---ACAGGA-GGcc
gi|7 : gccaagagtaTTCTAGCTGGGAGTTCT---TAGTAGATAGGA-GAGGATTGAA
gi|18 : CCTAGCCAGGAGTTCC---TAG---GCAAGA-GGGGATTGAAccc
gi|25 : CCTAGCCTGGAGTTTC---TAG---GCAGAA-GGGGGTTGAAcc
gi|17 : CCAAGCCTTAAGTTCC---TAG---ACAGGA-GGAGATTGAAc
gi|20 : CTAGCCTGGAGTTCA---TAA---GCAGGA-GGGGGTTGAAccc
gi|19 : tCTAGTCTGGAGTTCC---TAG---TCAGGA-AGAGATTGAAcc
gi|28 : tTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATcc
gi|24 : taTAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAActa
gi|12 : ttTAGTCTGGAGATCC---AAG---GCAGGA-GGGGATTAAAc
gi|31 : gctttaAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|29 : AGCCTGGAGTTCC---TAG---GCAGGA-AGGACTTGAA
gi|30 : CTGGAGTTTC---CAG---GCAGGA-GGGGATTGAAc
Alignments
lowQualScore : 222 222 1
lowQualScore : ... ... .
lowQualScore : 333 333 3
consensus : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
Reference ( family-2439 ) : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
gi|1 : GTTCCTAGACTTGAGTTCC---CAG---GCAGGA-AGGAATTGAA
gi|10 : gatAGGTTCCTAGCCTGGAGTTCC---CAG---GCAGGA-GGGGATTGAAcc
gi|11 : GTTCCTAGTCTGGAGTTCC---TAG---GCAGGA-GGGGCTTGAg
gi|12 : gatTAGTCTGGAGATCC---AAG---GCAGGA-GGGGATTAAA
gi|13 : gctttaGTTTCTAGCCTGGTGTTCC---TAG---GCAGGA-GGGAATTGAAc
gi|14 : TTTCTAGCCTGGAGTTCC---TAT---GCAGAA-GGGGACTGc
gi|15 : gaaaTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GG
gi|16 : gccaagagtaTCCTAGCCTGGAGTTTC---TAG---GCAAGA-GGGGATAGAA
gi|17 : CCAAGCCTTAAGTTCC---TAG---ACAGGA-GGAGATTGAAcc
gi|18 : CCTAGCCAGGAGTTCC---TAG---GCAAGA-GGGGATTGAAccc
gi|19 : CTAGTCTGGAGTTCC---TAG---TCAGGA-AGAGATTGAAcc
gi|2 : tGGTTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GAGGATcc
gi|20 : CTAGCCTGGAGTTCA---TAA---GCAGGA-GGGGGTTGAAcatttgaa
gi|21 : tTTCCTAGCCTGGAGTTCC---TAG---GCAGGAGGGGGACTGAcc
gi|22 : TCCTAGCCTGGAATTCC---TAG---GCAGGA-GGGGATTGGA
gi|23 : TCCTAGCCTGAAATTCC---TAG---GCAGGA-GGGGATTGGAc
gi|24 : TAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|25 : ttCCTAGCCTGGAGTTTC---TAG---GCAGAA-GGGGGTTGAAc
gi|26 : TTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAc
gi|27 : AGGTTCCTAGTCTGGTGTCCC---AAG---GCAGGA-
gi|28 : aagTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGAT
gi|29 : taAGCCTGGAGTTCC---TAG---GCAGGA-AGGACTTGAActa
gi|3 : GTTCCTAGCCTGGAGTTCTAAGTAG---ATAGGA-GAGGATTGAAc
gi|30 : tCTGGAGTTTC---CAG---GCAGGA-GGGGATTGAAc
gi|31 : aaAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|4 : TTTTTAGCCTGGAGTTCC---TAG---AC---A-AGGGATTAA
gi|5 : gcgcTTCCTAGCCTGGAGTTCC---TGG---ACAAGA-GGGGATTAAAttaaac
gi|6 : gacaAGGTTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAAc
gi|7 : gTTCTAGCTGGGAGTTCT---TAGTAGATAGGA-GAGGATTGAAt
gi|8 : AGGTTCCTAGACCAGAGTTCC---TGG---GCAGAA-ccc
gi|9 : caagAGGTTCCTAGCCTAGAGTTCC---TAG---GCTGGA-GGGGACTGAAaatatt
Alignments
lowQualScore : 222 222 1
lowQualScore : ... ... .
lowQualScore : 333 333 3
consensus : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
Reference ( family-2439 ) : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
gi|1 : GTTCCTAGACTTGAGTTCC---CAG---GCAGGA-AGGAATTGAA
gi|10 : gatAGGTTCCTAGCCTGGAGTTCC---CAG---GCAGGA-GGGGATTGAAcc
gi|11 : GTTCCTAGTCTGGAGTTCC---TAG---GCAGGA-GGGGCTTGAg
gi|12 : gatTAGTCTGGAGATCC---AAG---GCAGGA-GGGGATTAAA
gi|13 : gctttaGTTTCTAGCCTGGTGTTCC---TAG---GCAGGA-GGGAATTGAAc
gi|14 : TTTCTAGCCTGGAGTTCC---TAT---GCAGAA-GGGGACTGc
gi|15 : gaaaTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GG
gi|16 : gccaagagtaTCCTAGCCTGGAGTTTC---TAG---GCAAGA-GGGGATAGAA
gi|17 : CCAAGCCTTAAGTTCC---TAG---ACAGGA-GGAGATTGAAcc
gi|18 : CCTAGCCAGGAGTTCC---TAG---GCAAGA-GGGGATTGAAccc
gi|19 : CTAGTCTGGAGTTCC---TAG---TCAGGA-AGAGATTGAAcc
gi|2 : tGGTTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GAGGATcc
gi|20 : CTAGCCTGGAGTTCA---TAA---GCAGGA-GGGGGTTGAAcatttgaa
gi|21 : tTTCCTAGCCTGGAGTTCC---TAG---GCAGGAGGGGGACTGAcc
gi|22 : TCCTAGCCTGGAATTCC---TAG---GCAGGA-GGGGATTGGA
gi|23 : TCCTAGCCTGAAATTCC---TAG---GCAGGA-GGGGATTGGAc
gi|24 : TAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|25 : ttCCTAGCCTGGAGTTTC---TAG---GCAGAA-GGGGGTTGAAc
gi|26 : TTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAc
gi|27 : AGGTTCCTAGTCTGGTGTCCC---AAG---GCAGGA-
gi|28 : aagTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGAT
gi|29 : taAGCCTGGAGTTCC---TAG---GCAGGA-AGGACTTGAActa
gi|3 : GTTCCTAGCCTGGAGTTCTAAGTAG---ATAGGA-GAGGATTGAAc
gi|30 : tCTGGAGTTTC---CAG---GCAGGA-GGGGATTGAAc
gi|31 : aaAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|4 : TTTTTAGCCTGGAGTTCC---TAG---AC---A-AGGGATTAA
gi|5 : gcgcTTCCTAGCCTGGAGTTCC---TGG---ACAAGA-GGGGATTAAAttaaac
gi|6 : gacaAGGTTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAAc
gi|7 : gTTCTAGCTGGGAGTTCT---TAGTAGATAGGA-GAGGATTGAAt
gi|8 : AGGTTCCTAGACCAGAGTTCC---TGG---GCAGAA-ccc
gi|9 : caagAGGTTCCTAGCCTAGAGTTCC---TAG---GCTGGA-GGGGACTGAAaatatt
blockSeqs : AAG TAG G
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blockSeqCons :
originalCons : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
finalCons : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
Alignments
lowQualScore : 222 222 1
lowQualScore : ... ... .
lowQualScore : 333 333 3
consensus : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
Reference ( family-2439 ) : AGGTTCCTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGATTGAA
gi|1 : GTTCCTAGACTTGAGTTCC---CAG---GCAGGA-AGGAATTGAA
gi|10 : gatAGGTTCCTAGCCTGGAGTTCC---CAG---GCAGGA-GGGGATTGAAcc
gi|11 : GTTCCTAGTCTGGAGTTCC---TAG---GCAGGA-GGGGCTTGAg
gi|12 : gatTAGTCTGGAGATCC---AAG---GCAGGA-GGGGATTAAA
gi|13 : gctttaGTTTCTAGCCTGGTGTTCC---TAG---GCAGGA-GGGAATTGAAc
gi|14 : TTTCTAGCCTGGAGTTCC---TAT---GCAGAA-GGGGACTGc
gi|15 : gaaaTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GG
gi|16 : gccaagagtaTCCTAGCCTGGAGTTTC---TAG---GCAAGA-GGGGATAGAA
gi|17 : CCAAGCCTTAAGTTCC---TAG---ACAGGA-GGAGATTGAAcc
gi|18 : CCTAGCCAGGAGTTCC---TAG---GCAAGA-GGGGATTGAAccc
gi|19 : CTAGTCTGGAGTTCC---TAG---TCAGGA-AGAGATTGAAcc
gi|2 : tGGTTCCTAGCCTGGAGTTCC---TAG---ACAGGA-GAGGATcc
gi|20 : CTAGCCTGGAGTTCA---TAA---GCAGGA-GGGGGTTGAAcatttgaa
gi|21 : tTTCCTAGCCTGGAGTTCC---TAG---GCAGGAGGGGGACTGAcc
gi|22 : TCCTAGCCTGGAATTCC---TAG---GCAGGA-GGGGATTGGA
gi|23 : TCCTAGCCTGAAATTCC---TAG---GCAGGA-GGGGATTGGAc
gi|24 : TAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|25 : ttCCTAGCCTGGAGTTTC---TAG---GCAGAA-GGGGGTTGAAc
gi|26 : TTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAc
gi|27 : AGGTTCCTAGTCTGGTGTCCC---AAG---GCAGGA-
gi|28 : aagTAGCCTGGAGTTCC---TAG---GCAGGA-GGGGAT
gi|29 : taAGCCTGGAGTTCC---TAG---GCAGGA-AGGACTTGAActa
gi|3 : GTTCCTAGCCTGGAGTTCTAAGTAG---ATAGGA-GAGGATTGAAc
gi|30 : tCTGGAGTTTC---CAG---GCAGGA-GGGGATTGAAc
gi|31 : aaAGCCTGTAGTTCC---TAG---GCAGGA-AGGGATTGAAc
gi|4 : TTTTTAGCCTGGAGTTCC---TAG---AC---A-AGGGATTAA
gi|5 : gcgcTTCCTAGCCTGGAGTTCC---TGG---ACAAGA-GGGGATTAAAttaaac
gi|6 : gacaAGGTTCCTTGTTTGGCGTTTC---TAG---GCAGAA-GGGGATTGAAc
gi|7 : gTTCTAGCTGGGAGTTCT---TAGTAGATAGGA-GAGGATTGAAt
gi|8 : AGGTTCCTAGACCAGAGTTCC---TGG---GCAGAA-ccc
gi|9 : caagAGGTTCCTAGCCTAGAGTTCC---TAG---GCTGGA-GGGGACTGAAaatatt