lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222 55555555555555555555555555555555555555555555555555555555555555 1111111111111111111111111111111111111111
lowQualScore : 1 11 444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 33 1 55555 1 222 1 5555555555 2222 22222 44444 1 1 222 11111111111 22 11111 11 1 11 3333333 2222 1 99999999999 1 2 8888888888888 11 11 6666666 3333 22 11 1 33333333333333 55 444 00000000000000000000000000000000000000000000000000000000000000 111 444444444 2 5555555555555555555555555555555555555555 1
lowQualScore : 0 4 6 77 222222222222222222222222222222222222222222222222222222222222222222222222222 6 2 6 6 6 5 5 6 22 6 5 99999 0 222 5 5555555555 2 2222 7 66666 2 55555 5 2 6 0 3 8 77 3 33 6 6 222 99999999999 1 77 6 6 3 3 22 6 1 3 77777 2 6 0 999 2 33 7 0 88 7 3 0000000 0 88 2 4444 5 33333333333 5 6 6 0 7777777777777 99 3 3 4 00 4 3333333 8888 66 33 4 5 55555555555555 6 6 55 6 000 88888888888888888888888888888888888888888888888888888888888888 3 4 666 2 999999999 2 0 2222222222222222222222222222222222222222 5 6
lowQualScore : . . . .. ........................................................................... . . . . . . . . .. . . ..... . ... . .......... . .... . ..... . ..... . . . . . . .. . .. . . ... ........... . .. . . . . .. . . . ..... . . . ... . .. . . .. . . ....... . .. . .... . ........... . . . . ............. .. . . . .. . ....... .... .. .. . . .............. . . .. . ... .............................................................. . . ... . ......... . . ........................................ . .
lowQualScore : 5 0 0 55 000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 0 0 0 0 0 0 00 0 0 00000 5 000 0 5555555555 5 3333 3 33333 5 55555 0 5 7 2 5 2 22 0 22 6 4 000 22222222222 8 44 8 0 8 8 00 0 4 2 66666 2 0 6 888 5 88 0 0 33 3 7 0000000 7 33 5 0000 0 00000000000 0 0 0 0 5555555555555 55 0 0 0 00 0 0000000 0000 00 00 0 0 00000000000000 0 0 00 0 000 00000000000000000000000000000000000000000000000000000000000000 0 0 555 5 000000000 5 0 0000000000000000000000000000000000000000 0 0
consensus : AGNTNTACCATTANGGACTTAGCTAGCTTGGANCACTGGTATCTCATTTGGAAAAGTTCAGCTCCCTTTGAAATNCAAGCTTGTTCGTTGTCTAAGAAANATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTGCTAACCANA-CTGAAAGCTANCAACCGTGTATGGGCAACGAAAGGTGCGAAAAGACTA-TGCATAGCCAAG---AGGACAATCAGTNGACCNGCCTTCCAGGTTGCTNTGCCAAAAGGCAAAGGNGTCAATGCTAGATTCTATCGTGACGAGGTGTTAAAGAAACTG-AAAA-AA-TATTTCNAGAAAAGGCGGCCCAAATCACTGGAATGAAGCATATGAA----ACTTCTGCATGACAATGCTCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGT-GAC-GTACTACNNCACNCCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCNNNGGTTG---AGAAGGNTTNCNCGCNGGNCGNAAATATGGGCCACGGCCGTNATGCCAGTTGGCTCCGCGNTNTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATG-AGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTGTNTTGTTTCANTTNTGTACNACCAAGGACATGTTAACATAATGATCACNCCTCGTATTACATCACACATGT---GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTC
Reference ( gi|1 ) : AGGTATACCGTTCGGGACT-----AG----GATCACTCATAGCTCGTGCGGAAAAGTTCAGCTCCTTTTGACATTCAAGCT------T------AGAGAGATTTCTACAAGATGGATTCCACGTTTGTTAACCAAAGAACAGAAGGACACAAGGGTAAAATTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCGAACCACATCGGAAAGCTAGCATCAGTCTATAAGCAACGGAAGGTGCGAAAAGATCA-TGCATAGCCAAG---ACGACAATCAGTGGACCA----TTCACGTTGCTGTGCCAAAAGGCAAAGGAGTCAATGTTAAATTCTATTGTGACAAAGTAATAAAGAAACTT-AAAA-GA-TATTTTCAAAAGAGACGGCTCAAATCA--GAAATGAAGCATATGAA----ACTTCTACATGACAATGTTCCAGCTCACAAATCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCACCCCCTTATTCCCCAGA--TTTAGCCCCATGTGACTTCTTCCTC-TTCCCTC--TTGTGAAAAAAAGATACTCGCAGGATGAAAATAT---TC-TAGCCGCTA-ATCAGCTGGCTCTGCACTATTCCAGTGCCT--------------AAAATGACTATTGTAACACATG-AAAATGTGGATCAAACGTCTGAA------TATTT------GTGTTGAATACCGTGGAGAGTACG---------------------TTCTTTGTTTTGTTTCAATTGTGTACCACCAAGGACA-G-TA-CATAATGATCACCCCTCGT-TTACATNNNNNNNNNNAAGCTATCAGTTCATGTATGTAAATTTGTCCACCCTGTC
gi|2 : AGATTTACCATTAGGGACTTAGCTAG----GATCACTGGTATCT-----GG--------------TTTTGAAATCCAAGCT------TTGTCTAAGAAAGATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGC
gi|10 : gctAGCTATACCATTATGGACTT----AGCTTGGAGCACTGGTATCTCATTTGGAAAAGTTCAGCTCCCTTTAAAATACAAGCTTGTTCGT------AGAAATATTTCTGCAAagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaggaatcaatgctagattcaatcgtgacaaagtgttaaggaaactggaaaagaatatttggtggcccaaattaggaatgaagcatatgaaacctttacatgataatgctccagttcacaaaaccgtaactgtattacagtttct
gi|4 : acggacactCATTTGCTAACCAAA---AAAAGCTACCAACCGTGTATA----------GGTGCGAAAAGACTA-TGCATAGCCAAG---AGGGCAATCAGTG
gi|3 : aaAACCATA-CTGAAAGCTAACAACCGTGTATGGGCAACGAAAGGTGTCACAAGA-CACTGCTTAGCCAAG---AGGACAATCAGttaaaaagattgtgtatgccatttttattacaatatattgacccgccttccaggttgctctgccaaaatgcaattgagtcaatgctagattctatcgtgacaacgtgtaaaagaaacaaaaaaaaattctaaaagtgacggcccgaatcaggaatgaagcatatgaaacttctttataacaaagctgcagctcacaaagccgcaactgtactacagtttctcgaccattaacgagagcactactccaccctttccc
gi|4 : cgaacatccaatcaaAAAAGATTG-TGTAT-GCCATTTTTATTACAATATATTGACCCGCCTTCCAGGTTGCTCTGCCAAAATGCAATTGAGTCAATGCTAGATTCTATCGTGACAACGTGTAAAAGAAAC---AAAA-AA-AAATTCTAAAAGTGACGGCCCGAATCA--GGAATGAAGCATATGAA----ACTTCTTTATAACAAAGCTGCAGCTCACAAAGCCGCAAC--TGTACTACAG-TTTCTCGA--CCATTAACGA---GA--GCACTACTCCACCCT----TTCCCggttaaaaaggtttgccgttttttcctaacattccatggagccaccattcaggttactgtaccaatagcaaaggcgccaatgctagtttctatcgtgacaaagtgttaaaaaactgaaaaagatatttccagaaaagactgcccaaatcaggaaagaagcatatgaaacttctacatgacactgctctggctcataaagccgcccttgtattacagtttcaccaccatgaatgagtggacgtattatatcac
gi|3 : aacatttgctaaccaaaaaaagctaccaaccgtgtataggtgcgaaaagactatgcatagccaagagggcaatcagtgttaACCA----TTCAGGTTACTGTACCAATAG-CAAAGGCGCCAATGCTAGTTTCTATCGTGACAAAGTGTTAAA-AAACTG-AAAAAGA-TATTTCCAGAAAAGACTGCCCAAATCA--GGAAAGAAGCATATGAA----ACTTCTACATGACACTGCTCTGGCTCATAAAGCCGCCCT--TGTATTACAG-TTTCACCA--CCATGAATGAGTGGAC-GTATTATATCAC
gi|5 : cgaacatccaatcaaaaccatactgaaagctaacaaccgtgtatgggcaacgaaaggtgtcacaagacactgcttagccaagaggacaatcagggttaaaaaggtttgccgttttttcctaacattccatggagccAAAAGGTAAAAGTGTTATTGGAAGGCACTTTCGTGATGTGGTACTAGAAAAACTG-AAAA-AG-TACTACGAAAATAG-TTGCCCAG-TCACTGGATTCAA----ATGGGTTCGCCTCCTGCATGACAATGCCGCAGCGCACA--TCT-TAACATTGTA--ACGGATTTATTGAAATC-TGAGAAAGTT-ACAGTGCTACCACACACCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCAAA--TTG----GAAAACTTCCGCGCTGGTCGTAAATATGGGTCACGGCCGTAA-ACCAG--GGCTTCGCGGTAT
gi|2 : tagccgtacaggtaccggtaagCAAAGGAATCAATGCTAGATTCAATCGTGACAAAGTGTTAAGGAAACTGGAAAA-GAATATTT--------GGTGGCCCAAATTA--GGAATGAAGCATATGAA----ACCTTTACATGATAATGCTCCAGTTCACAAAACCGTAAC--TGTATTACAG-TTTCTac
gi|8 : gctagatttaccattagggacttagctaggatcactggtatctggttttgaaatccaagctttgtctaagaaagatttctgcaagatggattccacatttgctaaccaaagaacagaaggaaacaatggtgacttttgcagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATTGTGACGTGATATTAAAAAAACCT-AAAA-AA-T-TACTAAGAAAAAGTGACCC-AGTCACTGGATTCAAACATGTTCA----CCTCTTGCGTGACAATGCCCCAGTGCAC
gi|6 : ctggtaaacaagggtaaaaatgtgacaggaaggtaTTCTT-TTCCCTCGGTTG---AGAAGGGTTACTCGCAGGACGAAAATAT---CT-AAGCCG-TATGTCAGTTGGCTCTGTCCTTTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATG-AGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTATTTTGTTTCATTTAT-TACCACCAAGGACATA-TAACATAATGATCATACCTCGTATTACATCACACATGT---GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTCttcccagaccttgcctcatgtaatttctcaaattgaaa
gi|15 : TTTTTGTGTTGTTTCAATTTTGTACAACCAAGG--A-GTTA-CATAATAATTACCCCTCGT-
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGAAGGTTAAGCGATACCGGTAAAAAAGGGTAAACATGTGACTGGAAGGTATCGTGATGTTGTACTAAAAACACTGAAAAAGTACGTCGAAAAACGTCGCTGAGTTACTGGATTTAAACAAGTTCGCCTCCTCCGTGACCATACCTCTGTCCTTGTAACGGATTTTGTATTACTGAGAAA
Unaligned ( gi|9 ): AATCAAAGATAAAGTGAAATGACAATTTTCATGATATGGTACTAAAATATTTGAAAAAGTTCTACAATAATGTTTAATCCAGTCAATGGTTCCAAATTCATGTTTACAGGTTGCATGAATGCCCCAGTGCACACCTCTGTCCTTGTAACTGATTTGTTAAAGTG
Unaligned ( gi|11 ): TTCAAGCAGGTTCATCTCTTGCAAGACAATGCCCCAGCTCACACCACTGTCCTTGTTACGGATGCTTTTTAGTCTGAGAAAGTTACA
Unaligned ( gi|12 ): TCTAGAAAGTTTATCAAAACAAGTACCGGTAAACAAAGGTAAACCTGTGGCTGGAAATGTACTAGTTTGATGTGGTGCTAAAAA
Unaligned ( gi|13 ): TCACTGCATTTAAACATGCTCACCTTTTGCATGATGATACCCCCAGCGTACACCTCTTTTCTTATAACGGATTAGGTGAAGTT
Unaligned ( gi|14 ): AAGGGTAAATGTGTGCTTGGAAGGTATTATTGTGATGTGGTACTAAAACACTGAACAGAA
Unaligned ( gi|16 ): TTAGAAGTCTGAGAAAGTTACAGTGCTACCAC
Alignments
lowQualScore : 111111111111 111111111111111111111
lowQualScore : 66666666666 22222 000000000000 7777777777777777777777777777777777777777777777777777777777777777777777777777777 222 111111111111111111111 333333 111 222 11111 11 22 1111 11 11 2 11 11 11 22 1 1111 55555555 3333333 1 55555555555555 1 5555555555555555555555555555555555 1 4444444 1 333 22 2 2 22
lowQualScore : 1 1 1 88888888888 1 00000 7 0 1 777777777777 1 3 3 66 9999999999999999999999999999999999999999999999999999999999999999999999999999999 3 1 777 1 333333333333333333333 0 6 888888 777 999 7 333 6 3 1 77777 0 1 1 1 1 1 5 66 4 00 33 5 1 99999 5 0 2 2 33 2 0 1 2222 1 2 0 3 11 3 8 33 3 0 2 0 22 22 88 11 2 77 77 3 3 2 6 8888 7 222 1 1 1 1 1 00000000 2222222 2 0 44 1 3 22222222222222 5 3 666 66 2 3333333333333333333333333333333333 0 4 1 1 6 1 6666666 1 5 555 77 3 0 0 77 2
lowQualScore : . . . ........... . ..... . . . ............ . . . .. ............................................................................... . . ... . ..................... . . ...... ... ... . ... . . . ..... . . . . . . . .. . .. .. . . ..... . . . . .. . . . .... . . . . .. . . .. . . . . .. .. .. .. . .. .. . . . . .... . ... . . . . . ........ ....... . . .. . . .............. . . ... .. . .................................. . . . . . . ....... . . ... .. . . . .. .
lowQualScore : 0 0 0 00000000000 0 77777 3 7 0 333333333333 0 0 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 000 0 333333333333333333333 7 7 333333 777 333 3 333 7 5 0 33333 7 0 0 0 0 1 4 11 0 99 66 7 1 77777 3 4 3 3 33 1 7 7 1111 3 2 8 2 00 8 0 88 2 2 5 0 55 00 22 00 5 55 55 0 0 5 0 0000 3 333 0 0 0 0 0 77777777 3333333 3 7 77 0 0 00000000000000 5 0 555 55 5 5555555555555555555555555555555555 7 0 0 0 7 0 3333333 0 5 000 55 0 0 0 55 5
consensus : AGNTATACCGTTAGGGACTTAGCTAG----GATCACTGGTATCTCGT-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCTT------------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANA-C-GAAAGCTANCAACCG---------------------TGTATAGGCAACGAAAG------GTGT-NAAAAGATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTCAGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAATCACTGGANTGAAGCATATGA----AACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCG--ACCATGAACGAGTGGAC-GTGCTACCTCAC-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTC-TTCCNNC-GTTGAGAAAAGTTACTCGCAGGACGAAAATAT---CTA-GGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTGT-TTGTTTCAATTNTGTACCACCAAGGACA-GTT-ACATAATGATCACCCCTCGTATTACATCACACATGT-AAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
Reference ( family-2371 ) : AGNTNTACCATTANGGACTTAGCTAGCTTGGANCACTGGTATCTCATTTGGAAAAGTTCAGCTCCCTTTGAAATNCAAGCTTGTTCGTTGTCTAAGAAANATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTGCTAACCANA-CTGAAAGCTANCAACCG---------------------TGTATGGGCAACGAAAG------GTGC-GAAAAGACTATGCATAGCCAAG---AGGACAATCAGTNGACCNGCCTTCCAGGTTGCTNTGCCAAAAGGCAAAGGNGTCAATGCTAGATTCTATCGTGACGAGGTGTTAAAGAAACTGAAAAA--AT-ATTTCNAGAAAAGGCGGCCCAAATCACTGGAATGAAGCATATGA----AACTTCTGCATGACAATGCTCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCG--ACCATGAACGAGT-GAC-GTACTACNNCACNCCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCNNNGGTTGAGAAGGNTTNCNCGCNGGNCGNAAATATGGGCCACGGCCG-TNATGCCAGTTGGCTCCGCGNTNTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTGTNTTGTTTCANTTNTGTACNACCAAGGACATGTTAACATAATGATCACNCCTCGTATTACATCACACATGT---GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTC
gi|1 : AGGTATACCGTTCGGGACT-----AG----GATCACTCATAGCTCGTGCGGAAAAGTTCAGCTCCTTTTGACATTCAAGCTT------------AGAGAGATTTCTACAAGATGGATTCCACGTTTGTTAACCAAAGAACAGAAGGACACAAGGGTAAAATTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCGAACCACATCGGAAAGCTAGCATCAG---------------------TCTATAAGCAACGGAAG------GTGC-GAAAAGATCATGCATAGCCAAG---ACGACAATCAGTGGACCA----TTCACGTTGCTGTGCCAAAAGGCAAAGGAGTCAATGTTAAATTCTATTGTGACAAAGTAATAAAGAAACTTAAAAG--AT-ATTTTCAAAAGAGACGGCTCAAATCA--GAAATGAAGCATATGA----AACTTCTACATGACAATGTTCCAGCTCACAAATCCGCAAC--TGTATTACAG-TTTCTCG--ACCATGAACGAGTGGAC-GTGCTACCTCACCCCCTTATTCCCCAGA--TTTAGCCCCATGTGACTTCTTCCTCTTCCCTCTTGTGAAAAAAAGATACTCGCAGGATGAAAATAT--TCTA--GCCGCTAAT--CAGCTGGCTCTGCACTATTCCAGTGCCT--------------AAAATGACTATTGTAACACA-TGAAAATGTGGATCAAACGTCTGAATATTTGTGTTGAATACCGTGGAGAGT-----------ACGTT------CT----------TTGTTTTGT-----TTCAATTGTGTACCACCAAGGACA-GT--ACATAATGATCACCCCTCGT-TTACATNNNNNNNNNNAAGCTATCAGTTCATGTATGTAAATTTGTCCACCCTGTC
gi|10 : AGCTATACCATTATGGACTTAGCT----TGGAGCACTGGTATCTCATTTGGAAAAGTTCAGCTCCCTTTAAAATACAAGCTTGTTCGT------AGAAATATTTCTGCAA
gi|11 : acggacactCTCTTGCAAGACAATGCCCCAGCTCACA
gi|15 : ttcaagcaggttcatTTTTTGTGTTGTTTCAATTTTGTACAACCAAGGA---GTT-ACATAATAATTACCCCTCGTccactgtccttgttacggatgctttttagtctgagaaagttaca
gi|2 : AGATTTACCATTAGGGACTTAGCTAG----GATCACTGGTATCT-----GG--------------TTTTGAAATCCAAGCTT------TGTCTAAGAAAGATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGC
gi|2 : gctCAAAGGAATCAATGCTAGATTCAATCGTGACAAAGTGTTAAGGAAACTGGAAAAGAAT-ATTT--------GGTGGCCCAAATTA--GGAATGAAGCATATGA----AACCTTTACATGATAATGCTCCAGTTCACAAAACCGTAAC--TGTATTACAG-TTTCTagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaggaatcaatgctagattcaatcgtgacaaagtgttaaggaaactggaaaagaatatttggtggcccaaattaggaatgaagcatatgaaacctttacatgataatgctccagttcacaaaaccgtaactgtattacagtttct
gi|3 : gctagatttaccattagggacttagctaggatcactggtatctggttttgaaatccaagctttgtctaagaaagatttctgcaagatggattccacatttgctaaccaaagaacagaaggaaacaatggtgacttttgcagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATA-CTGAAAGCTAACAACCG---------------------TGTATGGGCAACGAAAG------GTGT-CACAAGACACTGCTTAGCCAAG---AGGACAATCAG
gi|3 : cgaacatccaatcaaACATTCCATGGAGCCACCATTCAGGTTACTGTACCAATAG-CAAAGGCGCCAATGCTAGTTTCTATCGTGACAAAGTGTTAAA-AAACTGAAAAAG-AT-ATTTCCAGAAAAGACTGCCCAAATCA--GGAAAGAAGCATATGA----AACTTCTACATGACACTGCTCTGGCTCATAAAGCCGCCCT--TGTATTACAG-TTTCACC--ACCATGAATGAGTGGAC-GTATTATATCACggttaaaaaggtttgccgttttttcctaacattccatggagccaccattcaggttactgtaccaatagcaaaggcgccaatgctagtttctatcgtgacaaagtgttaaaaaactgaaaaagatatttccagaaaagactgcccaaatcaggaaagaagcatatgaaacttctacatgacactgctctggctcataaagccgcccttgtattacagtttcaccaccatgaatgagtggacgtattatatcac
gi|4 : cgaacatccaatcaaaaccatactgaaagctaacaaccgtgtatgggcaacgaaaggtgtcacaagacactgcttagccaagaggacaatcagggttaaaaaggtttgccgttttttcctaCATTTGCTAACCAAA---AAAAGCTACCAACCGTGTATAGGTGCGAAAAGACTATGCATAGCCAA-GAGGGCAATCAGTGTTAAAAAGATTGTGTAT-GCCATTTTTATTACAATATATTGACCCGCCTTCCAGGTTGCTCTGCCAAAATGCAATTGAGTCAATGCTAGATTCTATCGTGACAACGTGTAAAAGAAAC--AAAAA--AA-AATTCTAAAAGTGACGGCCCGAATCA--GGAATGAAGCATATGA----AACTTCTTTATAACAAAGCTGCAGCTCACAAAGCCGCAAC--TGTACTACAG-TTTCTCG--ACCATTAACGA---GA--GCACTACTCCA--CCCTT--TCCC
gi|5 : aaAAAAGGTAAAAGTGTTATTGGAAGGCACTTTCGTGATGTGGTACTAGAAAAACTGAAAAA--GT-ACTACGA-AAATAGTTGCCC-AGTCACTGGATTCAA----ATGGGTTCGCCTCCTGCATGACAATGCCGCAGCGCACA---TCTTAACATTGTA--ACGGATTTATTGAAATC-TGAGAAAGT-TACAGTGCTACCACACACCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCAAA--TTG-GAAAACTTCCGCGCTGGTCGTAAATATGGGTCACGGCCG-TAA-ACCAG--GGCTTCGCGGTAT
gi|6 : tagccgtacaggtaccggtaagTTCTT-TTCCCTCGGTTGAGAAGGGTTACTCGCAGGACGAAAATAT---CTA-AGCCG-T-ATGTCAGTTGGCTCTGTCCTTTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTATTTTGTTTCATTTAT-TACCACCAAGGACATA-TAACATAATGATCATACCTCGTATTACATCACACATGT---GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTCac
gi|7 : AAAGGGTAAACATGTGACTGGAAGGT---ATCGTGATGTTGTACTAAAAACACTGAAAAA--GT-ACGTCGAAAAACGTCG--CTGAGTTACTGGATTTAAACAAGTTC----GCCTCCTCCGTGACCATAC
gi|8 : tgaaggttaagcgataccggtaaaAGGTACTATTGTGACGTGATATTAAAAAAACCTAAAAA--ATTACT--AAGAAAAAGTGACCCAG-TCACTGGATTCAAACATGTTC----ACCTCTTGCGTGACAATGCCCCAGTGCACctctgtccttgtaacggattttgtattactgagaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATCAAAGATAAAGTGAAATGACAATTTTCATGATATGGTACTAAAATATTTGAAAAAGTTCTACAATAATGTTTAATCCAGTCAATGGTTCCAAATTCATGTTTACAGGTTGCATGAATGCCCCAGTGCACACCTCTGTCCTTGTAACTGATTTGTTAAAGTG
Unaligned ( gi|12 ): TCTAGAAAGTTTATCAAAACAAGTACCGGTAAACAAAGGTAAACCTGTGGCTGGAAATGTACTAGTTTGATGTGGTGCTAAAAA
Unaligned ( gi|13 ): TCACTGCATTTAAACATGCTCACCTTTTGCATGATGATACCCCCAGCGTACACCTCTTTTCTTATAACGGATTAGGTGAAGTT
Unaligned ( gi|14 ): AAGGGTAAATGTGTGCTTGGAAGGTATTATTGTGATGTGGTACTAAAACACTGAACAGAA
Unaligned ( gi|16 ): TTAGAAGTCTGAGAAAGTTACAGTGCTACCAC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 333333 6666666666666 444 111111111111111111111 333333 1 222 1 1 11 1 22 11111 11 11 11 1 1 11 11 1 3333333 4444 1 1 3333 1 55555555555555 1 5555555555555555555555555555555555 3333 111 1 2 11 11 1 1 11
lowQualScore : 1 0 7 999999 7 1 7777777777777 1 1 22 1 1 333 1 333333333333333333333 6 888888 1 3 77 7 333 3 1 888 3 3 1 1 1 0 5 22 4 00 33 5 0 777 88 0 1 33 1 0 1 33333 2 0 3 11 3 8 33 3 0 2 55 22 11 0 0 1 77 88 1 1 1 3 5555555 7 1111 2 3 0000 2 0 3 1 22222222222222 5 1 1 1 22 1 3333333333333333333333333333333333 7777 1 6 7 666 5 0 88 88 1 5 5 88 1
lowQualScore : . . . ...... . . ............. . . .. . . ... . ..................... . ...... . . .. . ... . . ... . . . . . . . .. . .. .. . . ... .. . . .. . . . ..... . . . .. . . .. . . . .. .. .. . . . .. .. . . . . ....... . .... . . .... . . . . .............. . . . . .. . .................................. .... . . . ... . . .. .. . . . .. .
lowQualScore : 0 7 3 777777 3 0 7777777777777 0 0 00 0 0 777 0 333333333333333333333 7 333333 0 3 33 3 333 7 0 777 3 3 0 0 0 4 4 00 0 99 66 7 4 777 77 4 1 33 0 7 7 44444 2 8 2 00 8 0 88 2 2 5 00 55 55 0 0 0 55 00 0 0 0 3 7777777 3 7777 0 3 3333 0 7 7 0 00000000000000 5 0 0 0 00 0 5555555555555555555555555555555555 7777 0 7 3 000 5 0 55 00 0 5 5 00 0
consensus : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTC-TTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
Reference ( family-2371 ) : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANAC--GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAATCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTC-TTCCNNC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATA----TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
gi|1 : AGGTATACCGTTCGGGACT-----AGGATCACTCATAGCTCG-TGCGGAAAAGTTCAGCTCCTTTTGACATTCAAGCT------T------AGAGAGATTTCTACAAGATGGATTCCACGTTTGTTAACCAAAGAACAGAAGGACACAAGGGTAAAATTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCGAACCACATCGGAAAGCTAGCATCAGTCT---------------------ATAAGCAACGGAAG------GTGCGAAAA-GATCATGCATAGCCAAG---ACGACAATCAGTGGAC---CA-TTC-ACGTTGCTGTGCCAAAAGGCAAAGGAGTCAATGTTAAATTCTATTGTGACAAAGTAATAAAGAAACTTAAAAG--AT-ATTTTCAAAAGAGACGGCTCAAATCA--GAAATGAAGCATATGAA----ACTTCTACATGACAATGTTCCAGCTCACAAATCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCACC-CCCTTATTCCCCAGA--TTTAGCCCCATGTGACTTCTTCCTC-TTCCCTCTTG-TGAAAAAAAGATACTCGCAGGATGAAAATAT---TCTA-GCCGCTAAT--CAGCTGGCTCTGCACTATTCCAGTGCCT--------------AAAATGACTATTGTAACACA-TGAAAATGTGGATCAAACGTCTGAATATTTGTGTTGAATACCGTGGAGAGT-----------ACGTT------CT----------TTGTTTT------GTTTCAATTGTGTACCACCAAGGACA-G-TACATAATGATCACCCCTCGT-TTACATNNNNNNNNNNAAGCTATCAGTTCATGTATGTAAATTTGTCCACCCTGTC
gi|10 : AGCTATACCATTATGGACTTAGCTTGGAGCACTGGTATCTCATT-TGGAAAAGTTCAGCTCCCTTTAAAATACAAGCTTGTTCGT------AGAAATATTTCTGCAA
gi|11 : acggacactCTCTTGCAAGACAATGCCCCAGCTCACA
gi|15 : ttcaagcaggttcatTTTTTG-TGTTGTTTCAATTTTGTACAACCAAGG--A-GTTACATAATAATTACCCCTCGTccactgtccttgttacggatgctttttagtctgagaaagttaca
gi|2 : AGATTTACCATTAGGGACTTAGCTAGGATCACTGGTATCT------GG--------------TTTTGAAATCCAAGCT------TTGTCTAAGAAAGATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGC
gi|2 : gctCAAAGGAATCAATGCTAGATTCAATCGTGACAAAGTGTTAAGGAAACTGGAAAAGAAT-ATTT--------GGTGGCCCAAATTA--GGAATGAAGCATATGAA----ACCTTTACATGATAATGCTCCAGTTCACAAAACCGTAAC--TGTATTACAG-TTTCTagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaggaatcaatgctagattcaatcgtgacaaagtgttaaggaaactggaaaagaatatttggtggcccaaattaggaatgaagcatatgaaacctttacatgataatgctccagttcacaaaaccgtaactgtattacagtttct
gi|3 : gctagatttaccattagggacttagctaggatcactggtatctggttttgaaatccaagctttgtctaagaaagatttctgcaagatggattccacatttgctaaccaaagaacagaaggaaacaatggtgacttttgcagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATACT-GAAAGCTAACAACCGTGT---------------------ATGGGCAACGAAAG------GTGTCACAA-GACACTGCTTAGCCAAG---AGGACAATCAG
gi|3 : cgaacatccaatcaaACATTCCATGGAGCCACCATTC-AGGTTACTGTACCAATAG-CAAAGGCGCCAATGCTAGTTTCTATCGTGACAAAGTGTTAAA-AAACTGAAAAAG-AT-ATTTCCAGAAAAGACTGCCCAAATCA--GGAAAGAAGCATATGAA----ACTTCTACATGACACTGCTCTGGCTCATAAAGCCGCCCT--TGTATTACAG-TTTCACCA--CCATGAATGAGTGGAC-GTATTATATCA-C-ggttaaaaaggtttgccgttttttcctaacattccatggagccaccattcaggttactgtaccaatagcaaaggcgccaatgctagtttctatcgtgacaaagtgttaaaaaactgaaaaagatatttccagaaaagactgcccaaatcaggaaagaagcatatgaaacttctacatgacactgctctggctcataaagccgcccttgtattacagtttcaccaccatgaatgagtggacgtattatatcac
gi|4 : cgaacatccaatcaaaaccatactgaaagctaacaaccgtgtatgggcaacgaaaggtgtcacaagacactgcttagccaagaggacaatcagggttaaaaaggtttgccgttttttcctaCATTTGCTAACCAAA---AAAAGCTACCAACCGTGTATAGGTGCGAAAAGACTATGCATAGCCAA-GAGGGCAATCAGTGTTAAAAAGATTGTGTAT-GCCATTTTTATTACAATATATTGACCCGCC-TTCCAGGTTGCTCTGCCAAAATGCAATTGAGTCAATGCTAGATTCTATCGTGACAACGTGTAAAAGAAAC--AAAAA--AA-AATTCTAAAAGTGACGGCCCGAATCA--GGAATGAAGCATATGAA----ACTTCTTTATAACAAAGCTGCAGCTCACAAAGCCGCAAC--TGTACTACAG-TTTCTCGA--CCATTAACGA---GA--GCACTACTCCA-C-CCTTT
gi|5 : aaAAAAGGTAAAAGTGTTATTGGAAGGCACTTTCGTGATGTGGTACTAGAAAAACTGAAAAA--GT-ACTACGAAAA-TAGTTGCCC-AGTCACTGGATTCAA----ATGGGTTCGCCTCCTGCATGACAATGCCGCAGCGCACA---TCTTAACATTGTA--ACGGATTTATTGAAATC-TGAGAAAGTT-ACAGTGCTACCACA-CACCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCAA---A-TTG-GAAAACTTCCGCGCTGGTCGTAAATATGGGTCACGGCCG-TAA-ACCAG--GGCTTCGCGGTATccc
gi|6 : tagccgtacaggtaccggtaagTTCTT-TTCCCTC--GGTTGAGAAGGGTTACTCGCAGGACGAAAATA----TCTAAGCCG-TA-TGTCAGTTGGCTCTGTCCTTTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTATT-TTGTTTCATTTAT-TACCACCAAGGACATATAACATAATGATCATACCTCGTATTACAT-CACACATGT--GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTCac
gi|7 : AAAGGGTAAACATGTGACTGGAAGGT---ATCGTGATGTTGTACTAAAAACACTGAAAAA--GT-ACGTCGAAAAACGTCG--CTGAGTTACTGGATTTAAACAAGTTCG----CCTCCTCCGTGACCATACCTC
gi|8 : tgaaggttaagcgataccggtaaaAGGTACTATTGTGACGTGATATTAAAAAAACCTAAAAA--ATTACT--AAGAAAAAGTGACCC-AGTCACTGGATTCAAACATGTTCA----CCTCTTGCGTGACAATGCCCCAGTGCACtgtccttgtaacggattttgtattactgagaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATCAAAGATAAAGTGAAATGACAATTTTCATGATATGGTACTAAAATATTTGAAAAAGTTCTACAATAATGTTTAATCCAGTCAATGGTTCCAAATTCATGTTTACAGGTTGCATGAATGCCCCAGTGCACACCTCTGTCCTTGTAACTGATTTGTTAAAGTG
Unaligned ( gi|12 ): TCTAGAAAGTTTATCAAAACAAGTACCGGTAAACAAAGGTAAACCTGTGGCTGGAAATGTACTAGTTTGATGTGGTGCTAAAAA
Unaligned ( gi|13 ): TCACTGCATTTAAACATGCTCACCTTTTGCATGATGATACCCCCAGCGTACACCTCTTTTCTTATAACGGATTAGGTGAAGTT
Unaligned ( gi|14 ): AAGGGTAAATGTGTGCTTGGAAGGTATTATTGTGATGTGGTACTAAAACACTGAACAGAA
Unaligned ( gi|16 ): TTAGAAGTCTGAGAAAGTTACAGTGCTACCAC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 333333 6666666666666 222 111111111111111111111 333333 1 222 1 1 11 1 22 11111 11 11 11 1 1 11 11 2222 33333333 1 3333 1 55555555555555 1 5555555555555555555555555555555555 3333 111 1 2 11 11 1 1 11
lowQualScore : 1 0 7 999999 7 1 7777777777777 1 1 22 1 1 999 1 333333333333333333333 6 888888 1 3 77 7 333 3 1 888 3 3 1 1 1 0 5 22 4 00 33 5 0 777 88 0 1 33 1 0 1 33333 2 0 3 11 3 8 33 3 0 2 55 22 11 0 0 1 77 88 1 1 1 7777 7 11111111 3 0000 2 0 3 1 22222222222222 5 1 1 1 22 1 3333333333333333333333333333333333 7777 1 6 7 666 5 0 88 88 1 5 5 88 1
lowQualScore : . . . ...... . . ............. . . .. . . ... . ..................... . ...... . . .. . ... . . ... . . . . . . . .. . .. .. . . ... .. . . .. . . . ..... . . . .. . . .. . . . .. .. .. . . . .. .. . . . .... . ........ . .... . . . . .............. . . . . .. . .................................. .... . . . ... . . .. .. . . . .. .
lowQualScore : 0 7 3 777777 3 0 7777777777777 0 0 00 0 0 000 0 333333333333333333333 7 333333 0 3 33 3 333 7 0 777 3 3 0 0 0 4 4 00 0 99 66 7 4 777 77 4 1 33 0 7 7 44444 2 8 2 00 8 0 88 2 2 5 00 55 55 0 0 0 55 00 0 0 0 0000 3 33333333 3 3333 0 7 7 0 00000000000000 5 0 0 0 00 0 5555555555555555555555555555555555 7777 0 7 3 000 5 0 55 00 0 5 5 00 0
consensus : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
Reference ( family-2371 ) : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
gi|1 : AGGTATACCGTTCGGGACT-----AGGATCACTCATAGCTCG-TGCGGAAAAGTTCAGCTCCTTTTGACATTCAAGCT------T------AGAGAGATTTCTACAAGATGGATTCCACGTTTGTTAACCAAAGAACAGAAGGACACAAGGGTAAAATTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCGAACCACATCGGAAAGCTAGCATCAGTCT---------------------ATAAGCAACGGAAG------GTGCGAAAA-GATCATGCATAGCCAAG---ACGACAATCAGTGGAC---CA-TTC-ACGTTGCTGTGCCAAAAGGCAAAGGAGTCAATGTTAAATTCTATTGTGACAAAGTAATAAAGAAACTTAAAAG--AT-ATTTTCAAAAGAGACGGCTCAAATCA--GAAATGAAGCATATGAA----ACTTCTACATGACAATGTTCCAGCTCACAAATCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCACC-CCCTTATTCCCCAGA--TTTAGCCCCATGTGACTTCTTCCTCTTCCCTCTTG-TGAAAAAAAGATACTCGCAGGATGAAAATAT---TCTA-GCCGCTAAT--CAGCTGGCTCTGCACTATTCCAGTGCCT--------------AAAATGACTATTGTAACACA-TGAAAATGTGGATCAAACGTCTGAATATTTGTGTTGAATACCGTGGAGAGT-----------ACGTT------CT----------TTGTTTT------GTTTCAATTGTGTACCACCAAGGACA-G-TACATAATGATCACCCCTCGT-TTACATNNNNNNNNNNAAGCTATCAGTTCATGTATGTAAATTTGTCCACCCTGTC
gi|10 : AGCTATACCATTATGGACTTAGCTTGGAGCACTGGTATCTCATT-TGGAAAAGTTCAGCTCCCTTTAAAATACAAGCTTGTTCGT------AGAAATATTTCTGCAA
gi|11 : acggacactCTCTTGCAAGACAATGCCCCAGCTCACA
gi|15 : ttcaagcaggttcatTTTTTG-TGTTGTTTCAATTTTGTACAACCAAGG--A-GTTACATAATAATTACCCCTCGTccactgtccttgttacggatgctttttagtctgagaaagttaca
gi|2 : AGATTTACCATTAGGGACTTAGCTAGGATCACTGGTATCT------GG--------------TTTTGAAATCCAAGCT------TTGTCTAAGAAAGATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGC
gi|2 : gctCAAAGGAATCAATGCTAGATTCAATCGTGACAAAGTGTTAAGGAAACTGGAAAAGAAT-ATTT--------GGTGGCCCAAATTA--GGAATGAAGCATATGAA----ACCTTTACATGATAATGCTCCAGTTCACAAAACCGTAAC--TGTATTACAG-TTTCTagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaggaatcaatgctagattcaatcgtgacaaagtgttaaggaaactggaaaagaatatttggtggcccaaattaggaatgaagcatatgaaacctttacatgataatgctccagttcacaaaaccgtaactgtattacagtttct
gi|3 : gctagatttaccattagggacttagctaggatcactggtatctggttttgaaatccaagctttgtctaagaaagatttctgcaagatggattccacatttgctaaccaaagaacagaaggaaacaatggtgacttttgcagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATACT-GAAAGCTAACAACCGTGT---------------------ATGGGCAACGAAAG------GTGTCACAA-GACACTGCTTAGCCAAG---AGGACAATCAG
gi|3 : cgaacatccaatcaaACATTCCATGGAGCCACCATTC-AGGTTACTGTACCAATAG-CAAAGGCGCCAATGCTAGTTTCTATCGTGACAAAGTGTTAAA-AAACTGAAAAAG-AT-ATTTCCAGAAAAGACTGCCCAAATCA--GGAAAGAAGCATATGAA----ACTTCTACATGACACTGCTCTGGCTCATAAAGCCGCCCT--TGTATTACAG-TTTCACCA--CCATGAATGAGTGGAC-GTATTATATCA-C-ggttaaaaaggtttgccgttttttcctaacattccatggagccaccattcaggttactgtaccaatagcaaaggcgccaatgctagtttctatcgtgacaaagtgttaaaaaactgaaaaagatatttccagaaaagactgcccaaatcaggaaagaagcatatgaaacttctacatgacactgctctggctcataaagccgcccttgtattacagtttcaccaccatgaatgagtggacgtattatatcac
gi|4 : cgaacatccaatcaaaaccatactgaaagctaacaaccgtgtatgggcaacgaaaggtgtcacaagacactgcttagccaagaggacaatcagggttaaaaaggtttgccgttttttcctaCATTTGCTAACCAAA---AAAAGCTACCAACCGTGTATAGGTGCGAAAAGACTATGCATAGCCAA-GAGGGCAATCAGTGTTAAAAAGATTGTGTAT-GCCATTTTTATTACAATATATTGACCCGCC-TTCCAGGTTGCTCTGCCAAAATGCAATTGAGTCAATGCTAGATTCTATCGTGACAACGTGTAAAAGAAAC--AAAAA--AA-AATTCTAAAAGTGACGGCCCGAATCA--GGAATGAAGCATATGAA----ACTTCTTTATAACAAAGCTGCAGCTCACAAAGCCGCAAC--TGTACTACAG-TTTCTCGA--CCATTAACGA---GA--GCACTACTCCA-C-CCTTT
gi|5 : aaAAAAGGTAAAAGTGTTATTGGAAGGCACTTTCGTGATGTGGTACTAGAAAAACTGAAAAA--GT-ACTACGAAAA-TAGTTGCCC-AGTCACTGGATTCAA----ATGGGTTCGCCTCCTGCATGACAATGCCGCAGCGCACA---TCTTAACATTGTA--ACGGATTTATTGAAATC-TGAGAAAGTT-ACAGTGCTACCACA-CACCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCAA--A-TTG-GAAAACTTCCGCGCTGGTCGTAAATATGGGTCACGGCCG-TAA-ACCAG--GGCTTCGCGGTATccc
gi|6 : tagccgtacaggtaccggtaagTTCTTTTCCCTC--GGTTGAGAAGGGTTACTCGCAGGACGAAAATAT----CTAAGCCG-TA-TGTCAGTTGGCTCTGTCCTTTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTATT-TTGTTTCATTTAT-TACCACCAAGGACATATAACATAATGATCATACCTCGTATTACAT-CACACATGT--GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTCac
gi|7 : AAAGGGTAAACATGTGACTGGAAGGT---ATCGTGATGTTGTACTAAAAACACTGAAAAA--GT-ACGTCGAAAAACGTCG--CTGAGTTACTGGATTTAAACAAGTTCG----CCTCCTCCGTGACCATACCTC
gi|8 : tgaaggttaagcgataccggtaaaAGGTACTATTGTGACGTGATATTAAAAAAACCTAAAAA--ATTACT--AAGAAAAAGTGACCC-AGTCACTGGATTCAAACATGTTCA----CCTCTTGCGTGACAATGCCCCAGTGCACtgtccttgtaacggattttgtattactgagaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATCAAAGATAAAGTGAAATGACAATTTTCATGATATGGTACTAAAATATTTGAAAAAGTTCTACAATAATGTTTAATCCAGTCAATGGTTCCAAATTCATGTTTACAGGTTGCATGAATGCCCCAGTGCACACCTCTGTCCTTGTAACTGATTTGTTAAAGTG
Unaligned ( gi|12 ): TCTAGAAAGTTTATCAAAACAAGTACCGGTAAACAAAGGTAAACCTGTGGCTGGAAATGTACTAGTTTGATGTGGTGCTAAAAA
Unaligned ( gi|13 ): TCACTGCATTTAAACATGCTCACCTTTTGCATGATGATACCCCCAGCGTACACCTCTTTTCTTATAACGGATTAGGTGAAGTT
Unaligned ( gi|14 ): AAGGGTAAATGTGTGCTTGGAAGGTATTATTGTGATGTGGTACTAAAACACTGAACAGAA
Unaligned ( gi|16 ): TTAGAAGTCTGAGAAAGTTACAGTGCTACCAC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 333333 6666666666666 222 111111111111111111111 333333 1 222 1 1 11 1 22 11111 11 11 11 1 1 11 11 2222 33333333 1 3333 1 55555555555555 1 5555555555555555555555555555555555 3333 111 1 2 11 11 1 1 11
lowQualScore : 1 0 7 999999 7 1 7777777777777 1 1 22 1 1 999 1 333333333333333333333 6 888888 1 3 77 7 333 3 1 888 3 3 1 1 1 0 5 22 4 00 33 5 0 777 88 0 1 33 1 0 1 33333 2 0 3 11 3 8 33 3 0 2 55 22 11 0 0 1 77 88 1 1 1 7777 7 11111111 3 0000 2 0 3 1 22222222222222 5 1 1 1 22 1 3333333333333333333333333333333333 7777 1 6 7 666 5 0 88 88 1 5 5 88 1
lowQualScore : . . . ...... . . ............. . . .. . . ... . ..................... . ...... . . .. . ... . . ... . . . . . . . .. . .. .. . . ... .. . . .. . . . ..... . . . .. . . .. . . . .. .. .. . . . .. .. . . . .... . ........ . .... . . . . .............. . . . . .. . .................................. .... . . . ... . . .. .. . . . .. .
lowQualScore : 0 7 3 777777 3 0 7777777777777 0 0 00 0 0 000 0 333333333333333333333 7 333333 0 3 33 3 333 7 0 777 3 3 0 0 0 4 4 00 0 99 66 7 4 777 77 4 1 33 0 7 7 44444 2 8 2 00 8 0 88 2 2 5 00 55 55 0 0 0 55 00 0 0 0 0000 3 33333333 3 3333 0 7 7 0 00000000000000 5 0 0 0 00 0 5555555555555555555555555555555555 7777 0 7 3 000 5 0 55 00 0 5 5 00 0
consensus : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
Reference ( family-2371 ) : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
gi|1 : AGGTATACCGTTCGGGACT-----AGGATCACTCATAGCTCG-TGCGGAAAAGTTCAGCTCCTTTTGACATTCAAGCT------T------AGAGAGATTTCTACAAGATGGATTCCACGTTTGTTAACCAAAGAACAGAAGGACACAAGGGTAAAATTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCGAACCACATCGGAAAGCTAGCATCAGTCT---------------------ATAAGCAACGGAAG------GTGCGAAAA-GATCATGCATAGCCAAG---ACGACAATCAGTGGAC---CA-TTC-ACGTTGCTGTGCCAAAAGGCAAAGGAGTCAATGTTAAATTCTATTGTGACAAAGTAATAAAGAAACTTAAAAG--AT-ATTTTCAAAAGAGACGGCTCAAATCA--GAAATGAAGCATATGAA----ACTTCTACATGACAATGTTCCAGCTCACAAATCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCACC-CCCTTATTCCCCAGA--TTTAGCCCCATGTGACTTCTTCCTCTTCCCTCTTG-TGAAAAAAAGATACTCGCAGGATGAAAATAT---TCTA-GCCGCTAAT--CAGCTGGCTCTGCACTATTCCAGTGCCT--------------AAAATGACTATTGTAACACA-TGAAAATGTGGATCAAACGTCTGAATATTTGTGTTGAATACCGTGGAGAGT-----------ACGTT------CT----------TTGTTTT------GTTTCAATTGTGTACCACCAAGGACA-G-TACATAATGATCACCCCTCGT-TTACATNNNNNNNNNNAAGCTATCAGTTCATGTATGTAAATTTGTCCACCCTGTC
gi|10 : AGCTATACCATTATGGACTTAGCTTGGAGCACTGGTATCTCATT-TGGAAAAGTTCAGCTCCCTTTAAAATACAAGCTTGTTCGT------AGAAATATTTCTGCAA
gi|11 : acggacactCTCTTGCAAGACAATGCCCCAGCTCACA
gi|15 : ttcaagcaggttcatTTTTTG-TGTTGTTTCAATTTTGTACAACCAAGG--A-GTTACATAATAATTACCCCTCGTccactgtccttgttacggatgctttttagtctgagaaagttaca
gi|2 : AGATTTACCATTAGGGACTTAGCTAGGATCACTGGTATCT------GG--------------TTTTGAAATCCAAGCT------TTGTCTAAGAAAGATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGC
gi|2 : gctCAAAGGAATCAATGCTAGATTCAATCGTGACAAAGTGTTAAGGAAACTGGAAAAGAAT-ATTT--------GGTGGCCCAAATTA--GGAATGAAGCATATGAA----ACCTTTACATGATAATGCTCCAGTTCACAAAACCGTAAC--TGTATTACAG-TTTCTagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaggaatcaatgctagattcaatcgtgacaaagtgttaaggaaactggaaaagaatatttggtggcccaaattaggaatgaagcatatgaaacctttacatgataatgctccagttcacaaaaccgtaactgtattacagtttct
gi|3 : gctagatttaccattagggacttagctaggatcactggtatctggttttgaaatccaagctttgtctaagaaagatttctgcaagatggattccacatttgctaaccaaagaacagaaggaaacaatggtgacttttgcagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATACT-GAAAGCTAACAACCGTGT---------------------ATGGGCAACGAAAG------GTGTCACAA-GACACTGCTTAGCCAAG---AGGACAATCAG
gi|3 : cgaacatccaatcaaACATTCCATGGAGCCACCATTC-AGGTTACTGTACCAATAG-CAAAGGCGCCAATGCTAGTTTCTATCGTGACAAAGTGTTAAA-AAACTGAAAAAG-AT-ATTTCCAGAAAAGACTGCCCAAATCA--GGAAAGAAGCATATGAA----ACTTCTACATGACACTGCTCTGGCTCATAAAGCCGCCCT--TGTATTACAG-TTTCACCA--CCATGAATGAGTGGAC-GTATTATATCA-C-ggttaaaaaggtttgccgttttttcctaacattccatggagccaccattcaggttactgtaccaatagcaaaggcgccaatgctagtttctatcgtgacaaagtgttaaaaaactgaaaaagatatttccagaaaagactgcccaaatcaggaaagaagcatatgaaacttctacatgacactgctctggctcataaagccgcccttgtattacagtttcaccaccatgaatgagtggacgtattatatcac
gi|4 : cgaacatccaatcaaaaccatactgaaagctaacaaccgtgtatgggcaacgaaaggtgtcacaagacactgcttagccaagaggacaatcagggttaaaaaggtttgccgttttttcctaCATTTGCTAACCAAA---AAAAGCTACCAACCGTGTATAGGTGCGAAAAGACTATGCATAGCCAA-GAGGGCAATCAGTGTTAAAAAGATTGTGTAT-GCCATTTTTATTACAATATATTGACCCGCC-TTCCAGGTTGCTCTGCCAAAATGCAATTGAGTCAATGCTAGATTCTATCGTGACAACGTGTAAAAGAAAC--AAAAA--AA-AATTCTAAAAGTGACGGCCCGAATCA--GGAATGAAGCATATGAA----ACTTCTTTATAACAAAGCTGCAGCTCACAAAGCCGCAAC--TGTACTACAG-TTTCTCGA--CCATTAACGA---GA--GCACTACTCCA-C-CCTTT
gi|5 : aaAAAAGGTAAAAGTGTTATTGGAAGGCACTTTCGTGATGTGGTACTAGAAAAACTGAAAAA--GT-ACTACGAAAA-TAGTTGCCC-AGTCACTGGATTCAA----ATGGGTTCGCCTCCTGCATGACAATGCCGCAGCGCACA---TCTTAACATTGTA--ACGGATTTATTGAAATC-TGAGAAAGTT-ACAGTGCTACCACA-CACCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCAA--A-TTG-GAAAACTTCCGCGCTGGTCGTAAATATGGGTCACGGCCG-TAA-ACCAG--GGCTTCGCGGTATccc
gi|6 : tagccgtacaggtaccggtaagTTCTTTTCCCTC--GGTTGAGAAGGGTTACTCGCAGGACGAAAATAT----CTAAGCCG-TA-TGTCAGTTGGCTCTGTCCTTTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTATT-TTGTTTCATTTAT-TACCACCAAGGACATATAACATAATGATCATACCTCGTATTACAT-CACACATGT--GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTCac
gi|7 : AAAGGGTAAACATGTGACTGGAAGGT---ATCGTGATGTTGTACTAAAAACACTGAAAAA--GT-ACGTCGAAAAACGTCG--CTGAGTTACTGGATTTAAACAAGTTCG----CCTCCTCCGTGACCATACCTC
gi|8 : tgaaggttaagcgataccggtaaaAGGTACTATTGTGACGTGATATTAAAAAAACCTAAAAA--ATTACT--AAGAAAAAGTGACCC-AGTCACTGGATTCAAACATGTTCA----CCTCTTGCGTGACAATGCCCCAGTGCACtgtccttgtaacggattttgtattactgagaaa
blockSeqs : C T CATTT A A TGTTCGT A T CT T T CT A ATAGGTGCGAAAAGACTATGC C CAATCA C A AC A TTT G A CCA A C G A C T AA G GA T TCC AA A CT A G TTCGC G A AT T A AA A G GG CA AT . A G CC . A A G GG A GGGTCACG . AAC T G T TAGCACTATACCTA T T A T AC C CCCATGAGGGAACGCTATAAAGCTAAAGTGGTGA GTG T G A TAT A . . . T . . . G
blockSeqs : A T . . C TTGTCTA A . C . . . T . TG . . T C CCG . . G C C T AA G G . TCT GT A CT A G A A G . T . . A G G C TC . . A . CTAA . TGT . C ATT A . . GT
blockSeqs : T T A C T AC A . . ACG AC G CT A G A A G . C . . . . T . CA . .
blockSeqs : A T G A TG A . . TCG AA G . T A A T . . . .
blockSeqs : C T G A TT A . . T T . . T A C G
blockSeqs : . TG . . . A . . . T . C C
blockSeqs : G
blockSeqCons : CT
originalCons : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
finalCons : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATCAAAGATAAAGTGAAATGACAATTTTCATGATATGGTACTAAAATATTTGAAAAAGTTCTACAATAATGTTTAATCCAGTCAATGGTTCCAAATTCATGTTTACAGGTTGCATGAATGCCCCAGTGCACACCTCTGTCCTTGTAACTGATTTGTTAAAGTG
Unaligned ( gi|12 ): TCTAGAAAGTTTATCAAAACAAGTACCGGTAAACAAAGGTAAACCTGTGGCTGGAAATGTACTAGTTTGATGTGGTGCTAAAAA
Unaligned ( gi|13 ): TCACTGCATTTAAACATGCTCACCTTTTGCATGATGATACCCCCAGCGTACACCTCTTTTCTTATAACGGATTAGGTGAAGTT
Unaligned ( gi|14 ): AAGGGTAAATGTGTGCTTGGAAGGTATTATTGTGATGTGGTACTAAAACACTGAACAGAA
Unaligned ( gi|16 ): TTAGAAGTCTGAGAAAGTTACAGTGCTACCAC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 333333 6666666666666 222 111111111111111111111 333333 1 222 1 1 11 1 22 11111 11 11 11 1 1 11 11 2222 33333333 1 3333 1 55555555555555 1 5555555555555555555555555555555555 3333 111 1 2 11 11 1 1 11
lowQualScore : 1 0 7 999999 7 1 7777777777777 1 1 22 1 1 999 1 333333333333333333333 6 888888 1 3 77 7 333 3 1 888 3 3 1 1 1 0 5 22 4 00 33 5 0 777 88 0 1 33 1 0 1 33333 2 0 3 11 3 8 33 3 0 2 55 22 11 0 0 1 77 88 1 1 1 7777 7 11111111 3 0000 2 0 3 1 22222222222222 5 1 1 1 22 1 3333333333333333333333333333333333 7777 1 6 7 666 5 0 88 88 1 5 5 88 1
lowQualScore : . . . ...... . . ............. . . .. . . ... . ..................... . ...... . . .. . ... . . ... . . . . . . . .. . .. .. . . ... .. . . .. . . . ..... . . . .. . . .. . . . .. .. .. . . . .. .. . . . .... . ........ . .... . . . . .............. . . . . .. . .................................. .... . . . ... . . .. .. . . . .. .
lowQualScore : 0 7 3 777777 3 0 7777777777777 0 0 00 0 0 000 0 333333333333333333333 7 333333 0 3 33 3 333 7 0 777 3 3 0 0 0 4 4 00 0 99 66 7 4 777 77 4 1 33 0 7 7 44444 2 8 2 00 8 0 88 2 2 5 00 55 55 0 0 0 55 00 0 0 0 0000 3 33333333 3 3333 0 7 7 0 00000000000000 5 0 0 0 00 0 5555555555555555555555555555555555 7777 0 7 3 000 5 0 55 00 0 5 5 00 0
consensus : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
Reference ( family-2371 ) : AGNTATACCGTTAGGGACTTAGCTAGGATCACTGGTATCTCG-T-CGGAAAAGTTCAGCTCCTTTTGAAATNCAAGCT------T------AGAAAGATTTCTGCAAGATGGATTCCACGTTTGCTAACCAAAGAACAGAAGGANACAANGGTGANNTTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCNAACCANACC-GAAAGCTANCAACCGTGT---------------------ATAGGCAACGAAAG------GTGTNAAAA-GATCGTGCATAGCCAAG---ACGACAATCNGTGGACCCGCC-TTC-AGGTTGCTGTGCCAAAAGGCAAAGGNGTCAATGCTAGGTTCTATCGTGACGNNGTGTTAAAGAAACTGAAAAA--AT-ACTTCNAAAAANGGCGGCCCGAGTCACTGGANTGAAGCATATGAA----ACTCCTGCATGACAATGCCCCAGCTCACAAAGCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCA-C-CCCTTACTCCCNAGACCTTTAGCNCNATGNGGCTTCTTTCTCTTCCCTC--G-TTGAGAAAAGTTACTCGCAGGACGAAAATAT---TCTAGGCCG-TAATGCCAGCTGGCTCCGCGCTATTCCAGTNCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTNAAAATGTGGANCNAACGTCTGAANNTTTGTGTTNAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTTTTTG-T-TTGTTTCAATTNTGTACCACCAAGGACA-GTTACATAATGATCACCCCTCGTATTACAT-CACACATGTAAGCTATCAGTTCATNTATGTAAACTTGTCCANCCTGTC
gi|1 : AGGTATACCGTTCGGGACT-----AGGATCACTCATAGCTCG-TGCGGAAAAGTTCAGCTCCTTTTGACATTCAAGCT------T------AGAGAGATTTCTACAAGATGGATTCCACGTTTGTTAACCAAAGAACAGAAGGACACAAGGGTAAAATTTGCCCAAAAAAATGAAAATCTATTCGAAATTTGACAAAAGGAAGTTTTCAAGCATTGTCACTGGCGACGAAACGTGGATACTCGTTTGCGAACCACATCGGAAAGCTAGCATCAGTCT---------------------ATAAGCAACGGAAG------GTGCGAAAA-GATCATGCATAGCCAAG---ACGACAATCAGTGGAC---CA-TTC-ACGTTGCTGTGCCAAAAGGCAAAGGAGTCAATGTTAAATTCTATTGTGACAAAGTAATAAAGAAACTTAAAAG--AT-ATTTTCAAAAGAGACGGCTCAAATCA--GAAATGAAGCATATGAA----ACTTCTACATGACAATGTTCCAGCTCACAAATCCGCAAC--TGTATTACAG-TTTCTCGA--CCATGAACGAGTGGAC-GTGCTACCTCACC-CCCTTATTCCCCAGA--TTTAGCCCCATGTGACTTCTTCCTCTTCCCTCTTG-TGAAAAAAAGATACTCGCAGGATGAAAATAT---TCTA-GCCGCTAAT--CAGCTGGCTCTGCACTATTCCAGTGCCT--------------AAAATGACTATTGTAACACA-TGAAAATGTGGATCAAACGTCTGAATATTTGTGTTGAATACCGTGGAGAGT-----------ACGTT------CT----------TTGTTTT------GTTTCAATTGTGTACCACCAAGGACA-G-TACATAATGATCACCCCTCGT-TTACATNNNNNNNNNNAAGCTATCAGTTCATGTATGTAAATTTGTCCACCCTGTC
gi|10 : AGCTATACCATTATGGACTTAGCTTGGAGCACTGGTATCTCATT-TGGAAAAGTTCAGCTCCCTTTAAAATACAAGCTTGTTCGT------AGAAATATTTCTGCAA
gi|11 : acggacactCTCTTGCAAGACAATGCCCCAGCTCACA
gi|15 : ttcaagcaggttcatTTTTTG-TGTTGTTTCAATTTTGTACAACCAAGG--A-GTTACATAATAATTACCCCTCGTccactgtccttgttacggatgctttttagtctgagaaagttaca
gi|2 : AGATTTACCATTAGGGACTTAGCTAGGATCACTGGTATCT------GG--------------TTTTGAAATCCAAGCT------TTGTCTAAGAAAGATTTCTGCAAGATGGATTCCACATTTGCTAACCAAAGAACAGAAGGAAACAATGGTGACTTTTGC
gi|2 : gctCAAAGGAATCAATGCTAGATTCAATCGTGACAAAGTGTTAAGGAAACTGGAAAAGAAT-ATTT--------GGTGGCCCAAATTA--GGAATGAAGCATATGAA----ACCTTTACATGATAATGCTCCAGTTCACAAAACCGTAAC--TGTATTACAG-TTTCTagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaggaatcaatgctagattcaatcgtgacaaagtgttaaggaaactggaaaagaatatttggtggcccaaattaggaatgaagcatatgaaacctttacatgataatgctccagttcacaaaaccgtaactgtattacagtttct
gi|3 : gctagatttaccattagggacttagctaggatcactggtatctggttttgaaatccaagctttgtctaagaaagatttctgcaagatggattccacatttgctaaccaaagaacagaaggaaacaatggtgacttttgcagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACCATACT-GAAAGCTAACAACCGTGT---------------------ATGGGCAACGAAAG------GTGTCACAA-GACACTGCTTAGCCAAG---AGGACAATCAG
gi|3 : cgaacatccaatcaaACATTCCATGGAGCCACCATTC-AGGTTACTGTACCAATAG-CAAAGGCGCCAATGCTAGTTTCTATCGTGACAAAGTGTTAAA-AAACTGAAAAAG-AT-ATTTCCAGAAAAGACTGCCCAAATCA--GGAAAGAAGCATATGAA----ACTTCTACATGACACTGCTCTGGCTCATAAAGCCGCCCT--TGTATTACAG-TTTCACCA--CCATGAATGAGTGGAC-GTATTATATCA-C-ggttaaaaaggtttgccgttttttcctaacattccatggagccaccattcaggttactgtaccaatagcaaaggcgccaatgctagtttctatcgtgacaaagtgttaaaaaactgaaaaagatatttccagaaaagactgcccaaatcaggaaagaagcatatgaaacttctacatgacactgctctggctcataaagccgcccttgtattacagtttcaccaccatgaatgagtggacgtattatatcac
gi|4 : cgaacatccaatcaaaaccatactgaaagctaacaaccgtgtatgggcaacgaaaggtgtcacaagacactgcttagccaagaggacaatcagggttaaaaaggtttgccgttttttcctaCATTTGCTAACCAAA---AAAAGCTACCAACCGTGTATAGGTGCGAAAAGACTATGCATAGCCAA-GAGGGCAATCAGTGTTAAAAAGATTGTGTAT-GCCATTTTTATTACAATATATTGACCCGCC-TTCCAGGTTGCTCTGCCAAAATGCAATTGAGTCAATGCTAGATTCTATCGTGACAACGTGTAAAAGAAAC--AAAAA--AA-AATTCTAAAAGTGACGGCCCGAATCA--GGAATGAAGCATATGAA----ACTTCTTTATAACAAAGCTGCAGCTCACAAAGCCGCAAC--TGTACTACAG-TTTCTCGA--CCATTAACGA---GA--GCACTACTCCA-C-CCTTT
gi|5 : aaAAAAGGTAAAAGTGTTATTGGAAGGCACTTTCGTGATGTGGTACTAGAAAAACTGAAAAA--GT-ACTACGAAAA-TAGTTGCCC-AGTCACTGGATTCAA----ATGGGTTCGCCTCCTGCATGACAATGCCGCAGCGCACA---TCTTAACATTGTA--ACGGATTTATTGAAATC-TGAGAAAGTT-ACAGTGCTACCACA-CACCCTTACTCCCGAGACCTTT--CACAATGGGGCTTCTTTCTCATTCCAA--A-TTG-GAAAACTTCCGCGCTGGTCGTAAATATGGGTCACGGCCG-TAA-ACCAG--GGCTTCGCGGTATccc
gi|6 : tagccgtacaggtaccggtaagTTCTTTTCCCTC--GGTTGAGAAGGGTTACTCGCAGGACGAAAATAT----CTAAGCCG-TA-TGTCAGTTGGCTCTGTCCTTTTCCAGTTCCTTAGCACTATACCTAAAAATGACTATTGTAACGCGTTTAAAATATGGAATTAACGTCTGAAACTTTGTATTCAGTGCCGTGGAGAGTCCCATGAGGGAACGCTATAAAGCTAAAGTGGTGATTTCTTTATT-TTGTTTCATTTAT-TACCACCAAGGACATATAACATAATGATCATACCTCGTATTACAT-CACACATGT--GTTATTA--TTATTT-TGT-AACTTG--CAGCTTGTCac
gi|7 : AAAGGGTAAACATGTGACTGGAAGGT---ATCGTGATGTTGTACTAAAAACACTGAAAAA--GT-ACGTCGAAAAACGTCG--CTGAGTTACTGGATTTAAACAAGTTCG----CCTCCTCCGTGACCATACCTC
gi|8 : tgaaggttaagcgataccggtaaaAGGTACTATTGTGACGTGATATTAAAAAAACCTAAAAA--ATTACT--AAGAAAAAGTGACCC-AGTCACTGGATTCAAACATGTTCA----CCTCTTGCGTGACAATGCCCCAGTGCACtgtccttgtaacggattttgtattactgagaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATCAAAGATAAAGTGAAATGACAATTTTCATGATATGGTACTAAAATATTTGAAAAAGTTCTACAATAATGTTTAATCCAGTCAATGGTTCCAAATTCATGTTTACAGGTTGCATGAATGCCCCAGTGCACACCTCTGTCCTTGTAACTGATTTGTTAAAGTG
Unaligned ( gi|12 ): TCTAGAAAGTTTATCAAAACAAGTACCGGTAAACAAAGGTAAACCTGTGGCTGGAAATGTACTAGTTTGATGTGGTGCTAAAAA
Unaligned ( gi|13 ): TCACTGCATTTAAACATGCTCACCTTTTGCATGATGATACCCCCAGCGTACACCTCTTTTCTTATAACGGATTAGGTGAAGTT
Unaligned ( gi|14 ): AAGGGTAAATGTGTGCTTGGAAGGTATTATTGTGATGTGGTACTAAAACACTGAACAGAA
Unaligned ( gi|16 ): TTAGAAGTCTGAGAAAGTTACAGTGCTACCAC