lowQualScore : 111 33333333333 111 11111 22222 111111 444444 1 222222222222 2222222 1 11 22222 1 1 1 1 1
lowQualScore : 1 111 11111111111 6 0 77 1 888 777 333 66666 66 55555 7 5 333333 1 0 333333 3 3 66 2 5 2 444444444444 66 6666666 0 66 66 9 9 0 4 1 2 33333 3 0 8888 2 5 1 8 1
lowQualScore : . ... ........... . . .. . ... ... ... ..... .. ..... . . ...... . . ...... . . .. . . . ............ .. ....... . .. .. . . . . . . ..... . . .... . . . . .
lowQualScore : 2 777 88888888888 7 3 33 1 666 888 999 99999 11 00000 9 7 000000 6 1 000000 2 6 99 2 0 1 666666666666 99 9999999 0 99 99 6 2 2 5 5 2 66666 1 2 9999 0 0 9 9 4
consensus : ATGGCGCCAAGTTAGGAACA---GCAGAC---G-------TACTATCCCGCGTNNCACAAGGGACAGTACTCGGCCCGCTG---CTG---TT---AGCC--TT-----CATCAACG-ATCTCNC----AGACTTGATCAAATCATCCAAGTCATCATC--CAAGTTATTT-GCNGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAAC--A-TGGCAGATG-AGTTTCAAC-CCA-CTAAGTG
Reference ( gi|5 ) : ATGGTGCCAAGTTAGGAACA---GCAGAC---A-------TACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGCTG---CTG---TT---AGCC--TT-----CATCCATG-ATCTCAC----AGACTTGATCAAATCATCCAAGTCATCACC--CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAAC--A-TGGAAAATG-AGTGTCAATACCA-CTAAGTG
gi|4 : ATGGTGCCAAGTTAGGAACA---GCAGAC---A-------TACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGTTG---CTG---TT---AGCC--TT-----CATCCATG-ATCTCAC----AGACTTAATCAAATCATCCAAGTCATCATC--CAAGTTATTT-GCTGATGAAC-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAACTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAAC--A-TGGAAAATG-AGTGTCAATACCA-CTAAGTG
gi|6 : gATGGTGCCAAGTTAGGAACA---GCAGAC---A-------TACTATCT-GCATTTCACAAGGGATAGTACTCAGTCTGCTG---CTG---TT---AGCC--TT-----CATCCATG-ATCTCAC----AGACTTGATCAAATCATCCAAGTCATCACC--CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCGTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAAC--A-TGGCAAATG-AGTGTCAACACCA-CTAAGT
gi|12 : gATGAAGCCAAGTCAGGAACA---GCAGGC---G-------TACTATCCGGAGTTCCATACGATACAGTACCCGGTCCGCTA---TTGTTCTT---AGCCCGTT-----CATCAACT-ATCTCCCAGCAAGACGTGATAAGATC-TTCA--TCATCA-----AAGTTATTT-GC
gi|1 : gACGGCGCTAAGTCAGAGACA---TCAGAG---G-------TGTTGTCCGGCGTGCCCCAAGGTACAGTACTTGGTCCCCTG---TTG---TT-----TC--TTGCATACATCAACG-ACCTCTC----AGAATCTATTAAATCATC---GTC--TA-C--CAAGCTGTTC-ACAAACGACA-------GCATGCT--GTTCAATGTCAT-TGG--CAGCGT-ATTA-GACAGGCAACGGCTCCAGGAGGACCTA-TCAGCCCTGGAACAATGGGAAGAAAC--C-TGGCAGATG-AGTTTC
gi|12 : gGCTAAGAACAATAGCGGACCGGG-------TACTGTATCGTATGGAACTCCGGATAGTAC---GCCTGCTGTTCCTGAC-TT---GG-C--TT-----CATCcacccagcccactgcacatgcactgtcattggcattgctccacacagccgaaagaatgtcatcaacacagagtattacctccatgggcaac
gi|4 : AACA---GCA-AC---AGGCTGAGTACTATCCCTTGTGAAATACGGGATAGTAT---GTCTGCTG---TTC---CT---AACT--Tccgttcatcaactatctcccagcaagacgtgataagatcttcatcatcaaagttatttgc
gi|7 : gatggtgccCACAAGGCACAGTACTCGGCCCGCTG---TTG---TT-----CC--TC-----C-----TGTATATCAA----CGACATGCCTAA-------GAGTC-TCGTCTACAAA-CATTTCGCAGATG----------------A--ATT-------ATATCA--GAACGAAACTCTGACG------TTCTGCAGGAAGACCTCAGAAGC-CTGGAACAATG---GAAAACCGACTGGCAGATGCAGT-TTAAT-CCATCCAAGTGagccttcatccatgatctcacagacttaatcaaatcatccaagtcatcatccaagttatttgctgatgaacgtgcagttattgagaatgaccacgatagaaaactccttcaggaaaactttgcggcactggaaaagtgggtggaaacatggaaaatgagtgtcaataccactaagtg
gi|2 : atgaaggccacgcctctccaaccgcccctgtcatctccggagtgcCAAGGTACAGTACTTGGCCCCCTG---CTG---TT-----TC--TTGCATATATCAATG-ACCTCCT----AGAATCCATTAAGTCA------TCATCTAC--CAAGATGTTC-GCAGACGACATCATGCTG--TTCAAGGTC-------AT-CGG--CAGTGT-ATTA-GACAGACATCAGCTCCAGGAGAACCTA-TCAGCCCTGGAACAATGGGAAGAAAC--C-TGGCAGATG-AGTTTCCAC-CCAGCCAAATGcgaggtcatacgaataac
gi|3 : ccGATAGTTCTCTGACTGCTG---CTG---TTTTGAGCC--TT-----CATCAATG-ATCTCCC----AGATGTGAGCAAA-CTT-----TCATCATC--CATGTGACTT-GCTGGTAACA-------G--TGCA--GTT--------T-TCA--AAGT--------GATAGATAGCTCCTCCAGAAAGACCTT---TGCACTGCAAAGGTGGGAGGAAAA--A-TGGCAACTG-------AATCCCA-CAAAATGcactgtcattcgctccacaaagctgaaagaaggtcatcagcacagagtattacctccaggggcaaca
gi|9 : aTCAAATC------GTCAACTTC--CAAGTTATAT-TCTGATTACA-------G--TACA--GTCTTCA---ATGTGATCGAAAT--ACCACAATAGGCAGCTCCTGC------ACCT------CAGTGAAAATGCGGGAGGAAAC--A-TGGCAAGTG-AGCTTCAAC-CCG-CTAtactgtaatcagaatcaccactagttgctagaagatcataaacacttaatatggtctccatggccac
gi|10 : --GTG-------AT-CGA--GAACG--ACCATGACAGACAGCTCCTCCAGAAAGACCTC-ACAGCACTGGAAAAGTGGGAAGAGAC--A-TGGCAGATG-AGCTTCAACCCCA-CTAAGTGgctgtgctgtcatccgaatcgcccctcgttgccgaacgatcgtagacacctaatacaatctttatgacaaca
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CCTCCTGTATATCAACGACATGCATGGGAGAGCCTCGTATACAAACACACTATTCACAGATGAAAGCCTGCGTTACAGAAGAACCAAATCAGAACGCGACTCTGACATTCTGCAGGAATTGGCATTCTGCAGGAATACCTAAGAAGCCTGGAACAATTGGAAGCCGACTGCTCAACCCATCCAAGCGCGAGGTCAAACGGATAACCCAC
Unaligned ( gi|11 ): CTCCAGGAGGACCTATCAGCCCTTGCACAGTGGAAAGAAACCTGGCAGATGAGTTTCCACCCAGCCAAATGCACTGTCATTCGCATTGCTTCACACAGCCCAAAGAAAGTCATCAGCACAGAGTATTACCTCCATGAACAACATCTGGA
Unaligned ( gi|13 ): GCCAAATGCACTGTCACTAGCATTGCTCCACACAGCCGAAAGAAGGTCATCAGCACAGAATATTACCTCTGTGGGCAACAACTGGAAGCTGT
Unaligned ( gi|14 ): CACCACTAAGTGCACTGCCATCAGGATCACTCCTCGATGTCAGAAAAACCATTGACACCACATACAGTCTCCATGGCC
Unaligned ( gi|15 ): AACAGTGGGAAGCCCACTGGCAGATGCAGTTCACTCCATCAAAGTGCGAGGTGATATGGATAACCCG
Unaligned ( gi|16 ): GTCATCAGCACTGAGTATTACCTTCATGGGCAACAACTGGAAGTCGT
Unaligned ( gi|17 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Unaligned ( gi|18 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Alignments
lowQualScore : 1 1111 22222222222 1111 222222 111 1111111 2222222 11 111 1 1
lowQualScore : 4 0 3 22 2 888 8888 66 99999999999 0 2 0000 33 0 1 999999 1 333 1 4 1 0 6666666 66 66 3333333 8 66 2 55 6 2 777 3 3 0 1 55 4 3 0 4 2 2
lowQualScore : . . . .. . ... .... .. ........... . . .... .. . . ...... . ... . . . . ....... .. .. ....... . .. . .. . . ... . . . . .. . . . . . .
lowQualScore : 6 8 7 00 5 888 1111 99 55555555555 9 8 6666 22 2 8 444444 9 999 0 4 0 2 2222222 99 11 9999999 9 11 7 00 4 9 999 0 1 6 4 55 0 1 6 0 0 0
consensus : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCATC-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
Reference ( family-2344 ) : ATGGCGCCAAGTTAGGAACAGCAGACGTACTATCCCGCGTNNCACAAGGGACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCATCCAAGTCATCATC---CAAGTTATTT-GCNGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
gi|1 : ACGGCGCTAAGTCAGAGACATCAGAGGTGTTGTCCGGCGTGCCCCAAGGTACAGTACTTGGTCCCCTGTTG---TT-----TC--TTGCATAC-----ATCAACGACCTCTC----AGAATCTATTAAATCATC---GTC--TA-C---CAAGCTGTTC-ACAAACGACA-------GCATGCT--GTTCAATGTCAT-TGG--CAGCGT-ATTA-GACAGGCAACGGCTCCAGGAGGACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCA-
gi|10 : g--GTG-------AT-CGA--GAACG--ACCATGACAGACAGCTCCTCCAGAAAGACCTC-ACAGCACTGGAAAAGTGGGAAGAGACA--TGGCAGATG-AGCTTCAACC-CCA-CTAAGTGgcccactgcacatgcactgtcattggcattgctccacacagccgaaagaatgtcatcaacacagagtattacctccatgggcaac
gi|11 : gtcttcaagCTCCAGGAGGACCTA-TCAGCCCTTGCACAGTGGAAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATGcactgtcatcaggatagcccctcgatgtcggaaaatcatcgacactaca
gi|12 : ATGAAGCCAAGTCAGGAACAGCAGGCGTACTATCCGGAGTTCCATACGATACAGTACCCGGTCCGCTATTGTTCTT---AGCCCGTT-----C-----ATCAACTATCTCCCAGCAAGACGTGATAAGATC-T-----TCATCATC---AAAGTTATTT-GCcactgtcattcgcattgcttcacacagcccaaagaaagtcatcagcacagagtattacctccatgaacaacatctgga
gi|2 : gCAAGGTACAGTACTTGGCCCCCTGCTG---TT-----TC--TTGCATAT-----ATCAATGACCTCCT----AGA----ATC----CATT-AAGTCATCATCTACCAAGATGTTC-GCAGACGACATCATGCTG--TTCAAGGTC-------AT-CGG--CAGTGT-ATTA-GACAGACATCAGCTCCAGGAGAACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATG
gi|3 : ccGATAGTTCTCTGACTGCTGCTG---TTTTGAGCC--TT-----C-----ATCAATGATCTCCC----AGATGTGAGCAAA-CTT-----TCATCATC---CATGTGACTT-GCTGGTAACA-------G--TGCA--GTT--------T-TCA--AA--------GTGATAGATAGCTCCTCCAGAAAGACCT---TTGCACTGCAAAGGTGGGAGGAAAAA--TGGCAACTG-AAT------C-CCA-CAAAATGcactgtcattcgctccacaaagctgaaagaaggtcatcagcacagagtattacctccaggggcaaca
gi|4 : aATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGTTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTAATCAAATCATCCAAGTCATCATC---CAAGTTATTT-GCTGATGAAC-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAACTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTGtactgtaatcagaatcaccactagttgctagaagatcataaacacttaatatggtctccatggccac
gi|5 : gATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCATCCAAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTG
gi|6 : ATGGTGCCAAGTTAGGAACAGCAGACATACTATCT-GCATTTCACAAGGGATAGTACTCAGTCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCATCCAAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCGTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGCAAATG-AGTGTCAA-CACCA-CTAAGT
gi|7 : gTCCGGAGTGCCACAAGGCACAGTACTCGGCCCGCTGTTG---TT-----CC--TC-----CTGTATATCAACGA-----C----ATGCCTAA-----------GAGTC-TCGTCTA-CAAA-CATTTCGCAGATG----------------A--ATT-------ATATCA--GAACGAAACTCTGACG------TTCTGCAGGAAGACCTCAGAAGC-CTGGAACAATGGAA--AACCGACTGGCAGATGCAGTTT-AA-T-CCATCCAAGTG
gi|9 : atgaaggccacgcctctccaaccgcccctgtcatcTCAAATC------GTCAACTTC---CAAGTTATAT-TCTGATTACA-------G--TACA--GTCTTCA---ATGTGATCGAAAT--ACCACAATAGGCAGCTCCTGCA------CCTC------AGTGAAAATGCGGGAGGAAACA--TGGCAAGTG-AGCTTCAA-C-CCG-CTAcgaggtcatacgaataac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCTCCTGTATATCAACGACATGCATGGGAGAGCCTCGTATACAAACACACTATTCACAGATGAAAGCCTGCGTTACAGAAGAACCAAATCAGAACGCGACTCTGACATTCTGCAGGAATTGGCATTCTGCAGGAATACCTAAGAAGCCTGGAACAATTGGAAGCCGACTGCTCAACCCATCCAAGCGCGAGGTCAAACGGATAACCCAC
Unaligned ( gi|13 ): GCCAAATGCACTGTCACTAGCATTGCTCCACACAGCCGAAAGAAGGTCATCAGCACAGAATATTACCTCTGTGGGCAACAACTGGAAGCTGT
Unaligned ( gi|14 ): CACCACTAAGTGCACTGCCATCAGGATCACTCCTCGATGTCAGAAAAACCATTGACACCACATACAGTCTCCATGGCC
Unaligned ( gi|15 ): AACAGTGGGAAGCCCACTGGCAGATGCAGTTCACTCCATCAAAGTGCGAGGTGATATGGATAACCCG
Unaligned ( gi|16 ): GTCATCAGCACTGAGTATTACCTTCATGGGCAACAACTGGAAGTCGT
Unaligned ( gi|17 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Unaligned ( gi|18 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Alignments
lowQualScore : 1111 22222222222 1111 2222 111 1111111 2222222 11 111 1 1
lowQualScore : 6 3 1 888 8888 66 99999999999 0 2 0000 33 0 1 3 2222 4 333 1 4 0 0 6666666 66 66 3333333 8 66 2 55 6 2 777 3 3 0 1 55 4 3 0 4 2 2
lowQualScore : . . . ... .... .. ........... . . .... .. . . . .... . ... . . . . ....... .. .. ....... . .. . .. . . ... . . . . .. . . . . . .
lowQualScore : 7 7 0 888 1111 99 55555555555 9 8 6666 22 2 8 7 4444 6 999 0 4 8 2 2222222 99 11 9999999 9 11 7 00 4 9 999 0 1 6 4 55 0 1 6 0 0 0
consensus : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
Reference ( family-2344 ) : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
gi|1 : ACGGCGCTAAGTCAGAGACATCAGAGGTGTTGTCCGGCGTGCCCCAAGGTACAGTACTTGGTCCCCTGTTG---TT-----TC--TTGCATAC-----ATCAACGACCTCTC----AGAATCTATTAAATCAT-C---GTC--TA-C---CAAGCTGTTC-ACAAACGACA-------GCATGCT--GTTCAATGTCAT-TGG--CAGCGT-ATTA-GACAGGCAACGGCTCCAGGAGGACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCA-
gi|10 : g--GTG-------AT-CGA--GAACG--ACCATGACAGACAGCTCCTCCAGAAAGACCTC-ACAGCACTGGAAAAGTGGGAAGAGACA--TGGCAGATG-AGCTTCAACC-CCA-CTAAGTGgcccactgcacatgcactgtcattggcattgctccacacagccgaaagaatgtcatcaacacagagtattacctccatgggcaac
gi|11 : gtcttcaagCTCCAGGAGGACCTA-TCAGCCCTTGCACAGTGGAAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATGcactgtcatcaggatagcccctcgatgtcggaaaatcatcgacactaca
gi|12 : ATGAAGCCAAGTCAGGAACAGCAGGCGTACTATCCGGAGTTCCATACGATACAGTACCCGGTCCGCTATTGTTCTT---AGCCCGTT-----C-----ATCAACTATCTCCCAGCAAGACGTGATAAGATC-T------TCATCATC---AAAGTTATTT-GCcactgtcattcgcattgcttcacacagcccaaagaaagtcatcagcacagagtattacctccatgaacaacatctgga
gi|2 : gCAAGGTACAGTACTTGGCCCCCTGCTG---TT-----TC--TTGCATAT-----ATCAATGACCTCCT----AGA----ATC----CAT-T-AAGTCATCATCTACCAAGATGTTC-GCAGACGACATCATGCTG--TTCAAGGTC-------AT-CGG--CAGTGT-ATTA-GACAGACATCAGCTCCAGGAGAACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATG
gi|3 : ccATAGTTCTCTGACTGCTGCTG---TTTTGAGCC--TT-----C-----ATCAATGATCTCCC----AGATGTGAGCAAA-CTT------TCATCATC---CATGTGACTT-GCTGGTAACA-------G--TGCA--GTT--------T-TCA--AA--------GTGATAGATAGCTCCTCCAGAAAGACCT---TTGCACTGCAAAGGTGGGAGGAAAAA--TGGCAACTG-AAT------C-CCA-CAAAATGcactgtcattcgctccacaaagctgaaagaaggtcatcagcacagagtattacctccaggggcaaca
gi|4 : agATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGTTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTAATCAAATCAT-CCAAGTCATCATC---CAAGTTATTT-GCTGATGAAC-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAACTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTGtactgtaatcagaatcaccactagttgctagaagatcataaacacttaatatggtctccatggccac
gi|5 : gATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCAT-CCAAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTG
gi|6 : ATGGTGCCAAGTTAGGAACAGCAGACATACTATCT-GCATTTCACAAGGGATAGTACTCAGTCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCATCC-AAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCGTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGCAAATG-AGTGTCAA-CACCA-CTAAGT
gi|7 : gTCCGGAGTGCCACAAGGCACAGTACTCGGCCCGCTGTTG---TT-----CC--TC-----CTGTATATCAACGA-----C----ATGCCTAA------------GAGTC-TCGTCTA-CAAA-CATTTCGCAGATG----------------A--ATT-------ATATCA--GAACGAAACTCTGACG------TTCTGCAGGAAGACCTCAGAAGC-CTGGAACAATGGAA--AACCGACTGGCAGATGCAGTTT-AA-T-CCATCCAAGTG
gi|9 : atgaaggccacgcctctccaaccgcccctgtcatcTCAAATCGT-C-AACT-----TC---CAAGTTATAT-TCTGATTACA-------G--TACA--GTCTTCA---ATGTGATCGAAAT--ACCACAATAGGCAGCTCCTGCA------CCTC------AGTGAAAATGCGGGAGGAAACA--TGGCAAGTG-AGCTTCAA-C-CCG-CTAcgaggtcatacgaataac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCTCCTGTATATCAACGACATGCATGGGAGAGCCTCGTATACAAACACACTATTCACAGATGAAAGCCTGCGTTACAGAAGAACCAAATCAGAACGCGACTCTGACATTCTGCAGGAATTGGCATTCTGCAGGAATACCTAAGAAGCCTGGAACAATTGGAAGCCGACTGCTCAACCCATCCAAGCGCGAGGTCAAACGGATAACCCAC
Unaligned ( gi|13 ): GCCAAATGCACTGTCACTAGCATTGCTCCACACAGCCGAAAGAAGGTCATCAGCACAGAATATTACCTCTGTGGGCAACAACTGGAAGCTGT
Unaligned ( gi|14 ): CACCACTAAGTGCACTGCCATCAGGATCACTCCTCGATGTCAGAAAAACCATTGACACCACATACAGTCTCCATGGCC
Unaligned ( gi|15 ): AACAGTGGGAAGCCCACTGGCAGATGCAGTTCACTCCATCAAAGTGCGAGGTGATATGGATAACCCG
Unaligned ( gi|16 ): GTCATCAGCACTGAGTATTACCTTCATGGGCAACAACTGGAAGTCGT
Unaligned ( gi|17 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Unaligned ( gi|18 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Alignments
lowQualScore : 1111 22222222222 1111 2222 111 1111111 2222222 11 111 1 1
lowQualScore : 6 3 1 888 8888 66 99999999999 0 2 0000 33 0 1 3 2222 4 333 1 4 0 0 6666666 66 66 3333333 8 66 2 55 6 2 777 3 3 0 1 55 4 3 0 4 2 2
lowQualScore : . . . ... .... .. ........... . . .... .. . . . .... . ... . . . . ....... .. .. ....... . .. . .. . . ... . . . . .. . . . . . .
lowQualScore : 7 7 0 888 1111 99 55555555555 9 8 6666 22 2 8 7 4444 6 999 0 4 8 2 2222222 99 11 9999999 9 11 7 00 4 9 999 0 1 6 4 55 0 1 6 0 0 0
consensus : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
Reference ( family-2344 ) : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
gi|1 : ACGGCGCTAAGTCAGAGACATCAGAGGTGTTGTCCGGCGTGCCCCAAGGTACAGTACTTGGTCCCCTGTTG---TT-----TC--TTGCATAC-----ATCAACGACCTCTC----AGAATCTATTAAATCAT-C---GTC--TA-C---CAAGCTGTTC-ACAAACGACA-------GCATGCT--GTTCAATGTCAT-TGG--CAGCGT-ATTA-GACAGGCAACGGCTCCAGGAGGACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCA-
gi|10 : g--GTG-------AT-CGA--GAACG--ACCATGACAGACAGCTCCTCCAGAAAGACCTC-ACAGCACTGGAAAAGTGGGAAGAGACA--TGGCAGATG-AGCTTCAACC-CCA-CTAAGTGgcccactgcacatgcactgtcattggcattgctccacacagccgaaagaatgtcatcaacacagagtattacctccatgggcaac
gi|11 : gtcttcaagCTCCAGGAGGACCTA-TCAGCCCTTGCACAGTGGAAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATGcactgtcatcaggatagcccctcgatgtcggaaaatcatcgacactaca
gi|12 : ATGAAGCCAAGTCAGGAACAGCAGGCGTACTATCCGGAGTTCCATACGATACAGTACCCGGTCCGCTATTGTTCTT---AGCCCGTT-----C-----ATCAACTATCTCCCAGCAAGACGTGATAAGATC-T------TCATCATC---AAAGTTATTT-GCcactgtcattcgcattgcttcacacagcccaaagaaagtcatcagcacagagtattacctccatgaacaacatctgga
gi|2 : gCAAGGTACAGTACTTGGCCCCCTGCTG---TT-----TC--TTGCATAT-----ATCAATGACCTCCT----AGA----ATC----CAT-T-AAGTCATCATCTACCAAGATGTTC-GCAGACGACATCATGCTG--TTCAAGGTC-------AT-CGG--CAGTGT-ATTA-GACAGACATCAGCTCCAGGAGAACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATG
gi|3 : ccATAGTTCTCTGACTGCTGCTG---TTTTGAGCC--TT-----C-----ATCAATGATCTCCC----AGATGTGAGCAAA-CTT------TCATCATC---CATGTGACTT-GCTGGTAACA-------G--TGCA--GTT--------T-TCA--AA--------GTGATAGATAGCTCCTCCAGAAAGACCT---TTGCACTGCAAAGGTGGGAGGAAAAA--TGGCAACTG-AAT------C-CCA-CAAAATGcactgtcattcgctccacaaagctgaaagaaggtcatcagcacagagtattacctccaggggcaaca
gi|4 : agATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGTTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTAATCAAATCAT-CCAAGTCATCATC---CAAGTTATTT-GCTGATGAAC-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAACTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTGtactgtaatcagaatcaccactagttgctagaagatcataaacacttaatatggtctccatggccac
gi|5 : gATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCAT-CCAAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTG
gi|6 : ATGGTGCCAAGTTAGGAACAGCAGACATACTATCT-GCATTTCACAAGGGATAGTACTCAGTCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCATCC-AAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCGTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGCAAATG-AGTGTCAA-CACCA-CTAAGT
gi|7 : gTCCGGAGTGCCACAAGGCACAGTACTCGGCCCGCTGTTG---TT-----CC--TC-----CTGTATATCAACGA-----C----ATGCCTAA------------GAGTC-TCGTCTA-CAAA-CATTTCGCAGATG----------------A--ATT-------ATATCA--GAACGAAACTCTGACG------TTCTGCAGGAAGACCTCAGAAGC-CTGGAACAATGGAA--AACCGACTGGCAGATGCAGTTT-AA-T-CCATCCAAGTG
gi|9 : atgaaggccacgcctctccaaccgcccctgtcatcTCAAATCGT-C-AACT-----TC---CAAGTTATAT-TCTGATTACA-------G--TACA--GTCTTCA---ATGTGATCGAAAT--ACCACAATAGGCAGCTCCTGCA------CCTC------AGTGAAAATGCGGGAGGAAACA--TGGCAAGTG-AGCTTCAA-C-CCG-CTAcgaggtcatacgaataac
blockSeqs : G A T TTC TTGA CG GCATAT C AGCA CG T A CCA A TAC T C TCATGCT . AG TTCA A TC C AA T C CAG A A A AC C T C A G
blockSeqs : C T T . A . CTGTAT C . TG T T CCA A TA A . . . . . G . T T T C CA A C A . . T . A G
blockSeqs : C T G . A . C C . CT T A CCA A . T . . . . . . . T . C T AT A C A . . T . A T
blockSeqs : G C G . A . C A . CT T A TA A . T . . . . . . . T . C A AT T A G . . G . . .
blockSeqs : . A G . A . C A . CT T A CA A . T . . . . . . . T . C A TG G A G . . G . . .
blockSeqs : C . . . C A . CC . G G A . T . . . . . . . C . T A TG G A G . . G . . .
blockSeqs : . . . C . . . . . . . . T . . . . . . . A . C C TG G A G . . T . . .
blockSeqs : . . . . . . . . . . . . . . . C A A G . . T . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : A*** C********** CA** ** ******* **
originalCons : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
finalCons : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TTA---GCC--TTC----------ATCAACGATCTCNC----AGACTTGATCAAATCATCA--AGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCTCCTGTATATCAACGACATGCATGGGAGAGCCTCGTATACAAACACACTATTCACAGATGAAAGCCTGCGTTACAGAAGAACCAAATCAGAACGCGACTCTGACATTCTGCAGGAATTGGCATTCTGCAGGAATACCTAAGAAGCCTGGAACAATTGGAAGCCGACTGCTCAACCCATCCAAGCGCGAGGTCAAACGGATAACCCAC
Unaligned ( gi|13 ): GCCAAATGCACTGTCACTAGCATTGCTCCACACAGCCGAAAGAAGGTCATCAGCACAGAATATTACCTCTGTGGGCAACAACTGGAAGCTGT
Unaligned ( gi|14 ): CACCACTAAGTGCACTGCCATCAGGATCACTCCTCGATGTCAGAAAAACCATTGACACCACATACAGTCTCCATGGCC
Unaligned ( gi|15 ): AACAGTGGGAAGCCCACTGGCAGATGCAGTTCACTCCATCAAAGTGCGAGGTGATATGGATAACCCG
Unaligned ( gi|16 ): GTCATCAGCACTGAGTATTACCTTCATGGGCAACAACTGGAAGTCGT
Unaligned ( gi|17 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Unaligned ( gi|18 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Alignments
lowQualScore : 1111 22222222222 1111 2222 111 1111111 2222222 11 111 1 1
lowQualScore : 6 3 1 888 8888 66 99999999999 0 2 0000 33 0 1 3 2222 4 333 1 4 0 0 6666666 66 66 3333333 8 66 2 55 6 2 777 3 3 0 1 55 4 3 0 4 2 2
lowQualScore : . . . ... .... .. ........... . . .... .. . . . .... . ... . . . . ....... .. .. ....... . .. . .. . . ... . . . . .. . . . . . .
lowQualScore : 7 7 0 888 1111 99 55555555555 9 8 6666 22 2 8 7 4444 6 999 0 4 8 2 2222222 99 11 9999999 9 11 7 00 4 9 999 0 1 6 4 55 0 1 6 0 0 0
consensus : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
Reference ( family-2344 ) : ATGGTGCCAAGTTAGGAACAGCAGACGTACTATCCGGCGTTCCACAAGGNACAGTACTCGGCCCGCTGCTG---TT---AGCC--TT-----C-----ATCAACGATCTCNC----AGACTTGATCAAATCAT-C-AAGTCATCATC---CAAGTTATTT-GCTGATGACA-------G--TGCA--GTT-------AT-TGA--GAACG--ACCACGACAGACAGCTCCTCCAGGAAGACCTC-GCGGCACTGGAAAAGTGGGAGGAAACA--TGGCAGATG-AGTTTCAA-C-CCA-CTAAGTG
gi|1 : ACGGCGCTAAGTCAGAGACATCAGAGGTGTTGTCCGGCGTGCCCCAAGGTACAGTACTTGGTCCCCTGTTG---TT-----TC--TTGCATAC-----ATCAACGACCTCTC----AGAATCTATTAAATCAT-C---GTC--TA-C---CAAGCTGTTC-ACAAACGACA-------GCATGCT--GTTCAATGTCAT-TGG--CAGCGT-ATTA-GACAGGCAACGGCTCCAGGAGGACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCA-
gi|10 : g--GTG-------AT-CGA--GAACG--ACCATGACAGACAGCTCCTCCAGAAAGACCTC-ACAGCACTGGAAAAGTGGGAAGAGACA--TGGCAGATG-AGCTTCAACC-CCA-CTAAGTGgcccactgcacatgcactgtcattggcattgctccacacagccgaaagaatgtcatcaacacagagtattacctccatgggcaac
gi|11 : gtcttcaagCTCCAGGAGGACCTA-TCAGCCCTTGCACAGTGGAAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATGcactgtcatcaggatagcccctcgatgtcggaaaatcatcgacactaca
gi|12 : ATGAAGCCAAGTCAGGAACAGCAGGCGTACTATCCGGAGTTCCATACGATACAGTACCCGGTCCGCTATTGTTCTT---AGCCCGTT-----C-----ATCAACTATCTCCCAGCAAGACGTGATAAGATC-T------TCATCATC---AAAGTTATTT-GCcactgtcattcgcattgcttcacacagcccaaagaaagtcatcagcacagagtattacctccatgaacaacatctgga
gi|2 : gCAAGGTACAGTACTTGGCCCCCTGCTG---TT-----TC--TTGCATAT-----ATCAATGACCTCCT----AGA----ATC----CAT-T-AAGTCATCATCTACCAAGATGTTC-GCAGACGACATCATGCTG--TTCAAGGTC-------AT-CGG--CAGTGT-ATTA-GACAGACATCAGCTCCAGGAGAACCTA-TCAGCCCTGGAACAATGGGAAGAAACC--TGGCAGATG-AGTTTCCA-C-CCAGCCAAATG
gi|3 : ccATAGTTCTCTGACTGCTGCTG---TTTTGAGCC--TT-----C-----ATCAATGATCTCCC----AGATGTGAGCAAA-CTT------TCATCATC---CATGTGACTT-GCTGGTAACA-------G--TGCA--GTT--------T-TCA--AA--------GTGATAGATAGCTCCTCCAGAAAGACCT---TTGCACTGCAAAGGTGGGAGGAAAAA--TGGCAACTG-AAT------C-CCA-CAAAATGcactgtcattcgctccacaaagctgaaagaaggtcatcagcacagagtattacctccaggggcaaca
gi|4 : agATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGTTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTAATCAAATCAT-CCAAGTCATCATC---CAAGTTATTT-GCTGATGAAC-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAACTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTGtactgtaatcagaatcaccactagttgctagaagatcataaacacttaatatggtctccatggccac
gi|5 : gATGGTGCCAAGTTAGGAACAGCAGACATACTATCCCGTATTTCACAAGGGATAGTACTCAGCCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCAT-CCAAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCCTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGAAAATG-AGTGTCAA-TACCA-CTAAGTG
gi|6 : ATGGTGCCAAGTTAGGAACAGCAGACATACTATCT-GCATTTCACAAGGGATAGTACTCAGTCTGCTGCTG---TT---AGCC--TT-----C-----ATCCATGATCTCAC----AGACTTGATCAAATCATCC-AAGTCATCACC---CAAGTTATTT-GCTGATGATA-------G--TGCA--GTT-------AT-TGA--GAATG--ACCACGATAGAAAGCTCGTTCAGGAAAACTTT-GCGGCACTGGAAAAGTGGGTGGAAACA--TGGCAAATG-AGTGTCAA-CACCA-CTAAGT
gi|7 : gTCCGGAGTGCCACAAGGCACAGTACTCGGCCCGCTGTTG---TT-----CC--TC-----CTGTATATCAACGA-----C----ATGCCTAA------------GAGTC-TCGTCTA-CAAA-CATTTCGCAGATG----------------A--ATT-------ATATCA--GAACGAAACTCTGACG------TTCTGCAGGAAGACCTCAGAAGC-CTGGAACAATGGAA--AACCGACTGGCAGATGCAGTTT-AA-T-CCATCCAAGTG
gi|9 : atgaaggccacgcctctccaaccgcccctgtcatcTCAAATCGT-C-AACT-----TC---CAAGTTATAT-TCTGATTACA-------G--TACA--GTCTTCA---ATGTGATCGAAAT--ACCACAATAGGCAGCTCCTGCA------CCTC------AGTGAAAATGCGGGAGGAAACA--TGGCAAGTG-AGCTTCAA-C-CCG-CTAcgaggtcatacgaataac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCTCCTGTATATCAACGACATGCATGGGAGAGCCTCGTATACAAACACACTATTCACAGATGAAAGCCTGCGTTACAGAAGAACCAAATCAGAACGCGACTCTGACATTCTGCAGGAATTGGCATTCTGCAGGAATACCTAAGAAGCCTGGAACAATTGGAAGCCGACTGCTCAACCCATCCAAGCGCGAGGTCAAACGGATAACCCAC
Unaligned ( gi|13 ): GCCAAATGCACTGTCACTAGCATTGCTCCACACAGCCGAAAGAAGGTCATCAGCACAGAATATTACCTCTGTGGGCAACAACTGGAAGCTGT
Unaligned ( gi|14 ): CACCACTAAGTGCACTGCCATCAGGATCACTCCTCGATGTCAGAAAAACCATTGACACCACATACAGTCTCCATGGCC
Unaligned ( gi|15 ): AACAGTGGGAAGCCCACTGGCAGATGCAGTTCACTCCATCAAAGTGCGAGGTGATATGGATAACCCG
Unaligned ( gi|16 ): GTCATCAGCACTGAGTATTACCTTCATGGGCAACAACTGGAAGTCGT
Unaligned ( gi|17 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT
Unaligned ( gi|18 ): CCCCTCGATGTCGGAAAATCATCGACACTACATACTGT